Citrus Sinensis ID: 007114

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------
Protein Sequence
MDTDADQETSASVVVNVGDSESESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKNVSAGETEVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQNYPF
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHEEccEEEEEEccccccccccccEEHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mdtdadqetsASVVVNvgdsesesnkvyslegisANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALdregnwisdkdtgsleddqFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIElnedlkgsratsEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSkadsradsAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQqtkkdpsivrhdsttasfeRESKEVTELSAAVSeedkrqknvsageteVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQNYPF
Flexible Loop (DISEMBL)
mdtdadqetsasvvvnvgdsesesnkvYSLEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTlsaldregnwisdkdtgsledDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSeaqaradgaevRCKSLAetnielnedlkgsratsEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQaeetklatakdigirTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKlqqtkkdpsivrhdsttasfereskevtelsaavseedkrqknvsagetevasvdlksevgtLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQNYPF
Low Complexity Region (SEG)
MDTDADQETSASVVVNVGDSESESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKNVSAGETEVASVDLKSEVGTLRRIDAGLLTSKHFFiavlivlisaaaYYFQKQNYPF
Disordered region (IsUnstruct)
*****************************LEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELG**********************************************************************************************************LKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQR**********LVK*V******************************************************************QHAVAYAEASLEKQNMLYSTVKDMENLIQDL*****************LIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQ*I**L****KVMVV**********************************************************SEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQK*****
Disordered Region (DISOPRED)
******************************************************LHIAC*SEKL**L******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************TSKHFFIAVLIVLISAAAYYFQKQNY**
Disordered Region (DISEMBL)
***********SVVVNVGDSESESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKL*********SRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLS*********EVRCKSLAETNIELNEDL***************QLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLK**********AEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKKDPSIVRHDST************************************SVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQNYPF
Disordered Region (DISPRO)
****ADQETSASVVVNVGDSESESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKNVSAGETEVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTDADQETSASVVVNVGDSESESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNIELNEDLKGxxxxxxxxxxxxxxxxxxxxxLQHAVAYAEASLEKQNMLYSTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKNVSAGETEVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQNYPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	617	2.2.26 [Sep-21-2011]
Q8L7E5	703	WPP domain-interacting ta	yes	no	0.980	0.860	0.405	1e-120
A8MQR0	627	WPP domain-interacting ta	no	no	0.855	0.842	0.344	2e-71

>sp|Q8L7E5|WIT1_ARATH WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2

 Score =  433 bits (1114), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 288/711 (40%), Positives = 421/711 (59%), Gaps = 106/711 (14%)

Query: 1   MDTDADQETSASVVVNVGDS---ESESNKVYSLEGISANGDVI-EELRSAGEVFSQLELH 56
           M+T+ + + + SV  N  DS   E  S K    E +S  G V+  +L SAGEV +++EL 
Sbjct: 1   METETEHDRTVSVDDN--DSLVPEPSSTKESFFEDLSLTGQVMNPQLSSAGEVLTKVELD 58

Query: 57  IACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDS---------VETALAFDLLS 107
            A  SEKLVNL++LTM + TRE++FE+F  K+E   ++ S          E AL FDLLS
Sbjct: 59  FAFVSEKLVNLSLLTMQLGTRENDFESFVSKKEEDEEEPSSNVDDDDDSAEKALEFDLLS 118

Query: 108 GLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQIL 167
            +L+SE++ELE+ +  L+ +   A  +IS +   G+A +++E KL D+E SL Q  +Q++
Sbjct: 119 SILNSEVKELESLLGFLQNEIQSARVMISPFQHDGEAFLDLEGKLNDTEQSLGQLMEQVV 178

Query: 168 EIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEK 227
           E+KKQS+ FQR  S LD +G+W   + + S  D +F + +AKI +QTA+QQR+ LRMLEK
Sbjct: 179 EMKKQSSNFQRLSSGLDEQGSWSGGQTSVSQNDGEFGDLSAKINMQTADQQRNVLRMLEK 238

Query: 228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGI 287
           SLA+EM+LEKKL+ESR  E  L+ +L S EQ+++Y EE   DA  R  EA+N+AEV KG 
Sbjct: 239 SLAKEMELEKKLSESRNTERELEMKLYSSEQDVVYMEEVTEDAFSRWLEADNAAEVFKGT 298

Query: 288 SKELLGRLQIVLFNMNGSVQREAGLRSKL-------------------------DSLVKQ 322
           SKE+ G+LQI+ FN++GS +RE  L+SKL                         D LV Q
Sbjct: 299 SKEMSGKLQILQFNLSGSFKREDNLKSKLVDSKERLEAKECALHKLDSSNARLADFLVAQ 358

Query: 323 VE-VKESV--------------------IASLRENLSEAQARADGAEVRCKSLAETNIE- 360
            E +KES+                    ++SL E L+E   + + A+    +L  T++E 
Sbjct: 359 TEGLKESLQEAEEKLILLNTENSTLSEKVSSLEEQLNEYGIQTEDADATSGALI-TDLER 417

Query: 361 LNEDLKGSRATSE-----------------------------------KVESLERQLRES 385
           +NE+LK   A +E                                   K+ SLE+ LR+S
Sbjct: 418 INEELKDKLAKTEARAEETESKCKILEESKKELQDELGNFRDKGFTIHKLASLEKHLRDS 477

Query: 386 DIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEAN 445
           D+QL+HAVA  EAS EKQN+LYSTV DME++I+DLK KV KA++RAD  EEKLI++SE+N
Sbjct: 478 DLQLEHAVAAVEASKEKQNLLYSTVSDMEDVIEDLKSKVLKAENRADITEEKLIMVSESN 537

Query: 446 AGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQI 505
           A + EE+ F + RL+  E  L QAEE KL TAKDIG+  K++  LVMQ+A ERERL +QI
Sbjct: 538 AEVNEELKFFKGRLKEGEKYLQQAEERKLRTAKDIGVHNKIMKKLVMQLAAERERLHKQI 597

Query: 506 SSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKN--VS 563
           ++L+ EN V++VKL++  K   +   + +  S +      ++ +A+   +  R +   +S
Sbjct: 598 TNLSRENCVLMVKLKKVGKTGYMESGNGSEVSPK------SDQNASSCHQGSRLQATFIS 651

Query: 564 AGETEVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQN 614
               E      KS++G++RR+D G L  KH  +A+L++LIS+ AY   +QN
Sbjct: 652 LTNPEEEETGSKSDIGSVRRLDVGALRFKHILVAILVILISSIAYVISQQN 702

Together with WIT2, required for the nuclear envelope docking of RANGAP proteins in root tips.
Arabidopsis thaliana (taxid: 3702)

>sp|A8MQR0|WIT2_ARATH WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1

 Score =  270 bits (690), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 217/630 (34%), Positives = 345/630 (54%), Gaps = 102/630 (16%)

Query: 49  VFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDD--SVETALAFDLL 106
           + ++LE+  A +SEKL+NL++L MH+   +++ E         LD    S E AL FDLL
Sbjct: 26  MLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEGMG-----TLDSSPASFEKALTFDLL 80

Query: 107 SGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQI 166
            G+L+SE++E++  +  LEA  V     ISS        I +E KL +S +SL+QSR Q+
Sbjct: 81  CGILESEVKEVDEVLDVLEAQIVDTSYKISSCKH--GNYIVIEGKLGESAESLKQSRGQV 138

Query: 167 LEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAE-QQRHFLRML 225
            EI  Q A+ +RTL       ++I +   G+ E+++ +    K  L+ ++ + ++ LRML
Sbjct: 139 SEITLQLAQLRRTL-------HYIRN---GTSENEESVELRQKYALKPSDLRHKNALRML 188

Query: 226 EKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLK 285
           EKSL+RE++LEKKL E +Q EE LK +L   E+     EE +     R  EA+NS+EVL 
Sbjct: 189 EKSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVLT 248

Query: 286 GISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKE-----------------S 328
           GISKEL+GRLQI+ F++NGS QRE+ L+SKL+    Q+E K+                 S
Sbjct: 249 GISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIVS 308

Query: 329 VIASLRENLSEAQARADGAEVRCKS-----------LAE--------------------- 356
            + +LRE +  A+ +    ++  KS           LAE                     
Sbjct: 309 EVLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAES 368

Query: 357 ----------TNIELNEDLK----GSRATSEKVESLERQLRESDIQLQHAVAYAEASLEK 402
                      N+EL E+L          ++KV SLE+Q+RE ++Q+Q++   +EA+ E+
Sbjct: 369 GEAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQEQ 428

Query: 403 QNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECL 462
           QNMLYS + DME LI+DLK K SKA+SR ++ EE+ I+LS  N+ L +++SFLR + + L
Sbjct: 429 QNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKSL 488

Query: 463 EASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQT 522
           EA L  A   K   A++I  R KV+ ++++Q++ ERER+++Q+ SLA ENK++ V     
Sbjct: 489 EAMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKILRV----N 544

Query: 523 KKDPSIVRHDSTTA----SFERESKEVTELSAAVSEEDKRQKNVSAGETEVASVDLKSEV 578
           +   +  R+ S       SF  +  E+  L+ ++ E+++ ++     E E  SV  KS  
Sbjct: 545 QCSNTYQRNGSYAGDKELSFHADGHEIEALAESLQEDERTRE-----EPEKQSVSEKS-- 597

Query: 579 GTLRRIDAGLLTSKHFFIAVLIVLISAAAY 608
             +RR     +  KH  +  L+ ++  + +
Sbjct: 598 SEIRRA----IKLKHILVVALVFVLFCSFF 623

Together with WIT1, required for the nuclear envelope docking of RANGAP proteins in root tips.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	617
298204425	657	unnamed protein product [Vitis vinifera]	0.993	0.933	0.565	0.0
255585599	631	DNA double-strand break repair rad50 ATP	0.977	0.955	0.543	1e-172
30683605	703	WPP domain-interacting tail-anchored pro	0.980	0.860	0.405	1e-118
22530926	703	putative protein [Arabidopsis thaliana]	0.980	0.860	0.403	1e-118
356551059	557	PREDICTED: WPP domain-interacting tail-a	0.799	0.885	0.476	1e-117
356573609	555	PREDICTED: WPP domain-interacting tail-a	0.786	0.873	0.469	1e-113
147834282	737	hypothetical protein VITISV_035977 [Viti	0.721	0.603	0.533	1e-113
225451869	707	PREDICTED: WPP domain-interacting tail-a	0.709	0.619	0.524	1e-109
8953401	696	putative protein [Arabidopsis thaliana]	0.959	0.850	0.389	1e-108
357502641	626	WPP domain-interacting tail-anchored pro	0.870	0.857	0.437	1e-107

>gi|298204425|emb|CBI16905.3| unnamed protein product [Vitis vinifera]

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/661 (56%), Positives = 471/661 (71%), Gaps = 48/661 (7%)

Query: 1   MDTDADQETSASVV-VNVGDSESESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIAC 59
           MD +   + +ASV  +N  D E+E N +   EGIS+ G+V+ E+ +A EV  ++EL +AC
Sbjct: 1   MDAETVLDATASVDDINTSDPEAEENNMDLHEGISSYGEVMLEVGNATEVLKRVELDLAC 60

Query: 60  SSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELEN 119
           SSEKL NL+ILTMHVATRES+FEAFA + EH+LDD SV+ AL FDLLSG+LDSE+RE++N
Sbjct: 61  SSEKLFNLSILTMHVATRESDFEAFASEEEHVLDD-SVQKALEFDLLSGILDSEVREVDN 119

Query: 120 FITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRT 179
           F+TTL+ D    HE++SS   LG A +EMEEKL DS+  L+QS+D + EI+ QSAKFQRT
Sbjct: 120 FMTTLQKDVAHTHEILSSCENLGGAFMEMEEKLHDSDVLLKQSQDHVSEIRMQSAKFQRT 179

Query: 180 LSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKL 239
           L   D EG W +DK    LE+ +F N N KIK+QTAEQQR  LRMLEKSLARE+D+EKKL
Sbjct: 180 LLCFDGEGKWNNDKGMDLLENSEFSNMNTKIKMQTAEQQRDILRMLEKSLARELDVEKKL 239

Query: 240 TESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVL 299
            ESRQ+EE LK RL S EQE+ + EEE     ERLFEAEN+AEVLKGISKEL GRLQI  
Sbjct: 240 AESRQLEEELKLRLHSLEQEVFFMEEEEAIVWERLFEAENAAEVLKGISKELRGRLQIFQ 299

Query: 300 FNMNGSVQREAGLRSKLDSLVKQVEVKESVIA------------------SLREN----- 336
           FN+NGS++RE  L+SKL    K+VE KE  +                   +LRE      
Sbjct: 300 FNLNGSMKREGELKSKLQGSTKEVEDKEDALLKLESSTEDKLILSNSEAFTLREKVSSLE 359

Query: 337 -------LSEAQARADGAEVRCKSLAETNIELNEDLKGSRA--TSEKVESLERQLRESDI 387
                  +S+A++RA+ AE +CK L ETN+EL+++L   R+  T+EKV SLE+QLRESDI
Sbjct: 360 NQLKESEISKAESRAESAEAKCKLLMETNMELSDELVLLRSDNTTEKVNSLEKQLRESDI 419

Query: 388 QLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAG 447
           QLQHA+A AEASLEKQ+MLYST++DMENLI+DLKLKVSKA+SRAD  EEK IILSE+NA 
Sbjct: 420 QLQHALASAEASLEKQSMLYSTIEDMENLIEDLKLKVSKAESRADCTEEKCIILSESNAE 479

Query: 448 LTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISS 507
           L+EE+SFLR R+ECLE SLHQAEETK+ TAKDI +RTKVITNLVMQ+A ERERL +Q+S 
Sbjct: 480 LSEELSFLRTRMECLETSLHQAEETKVETAKDISVRTKVITNLVMQLAFERERLHKQVSL 539

Query: 508 LAMENKVMVVKLQQTKKDPSIV----------RHDSTTASFERES-KEVTELSAAVSEED 556
           L  +NKV+V KL++T +DPSI           + D TTA+  +E   E TE SA+  E +
Sbjct: 540 LTDKNKVLVGKLKKT-EDPSIASKVTRGEFCPKDDLTTATCAKECIVEQTEFSASSFEME 598

Query: 557 KRQKNVSAGETEVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQNYP 616
           +  KN+S G       D  SE  T+RR+D G L+ K+ F+AV I+L   AAY FQ+QN  
Sbjct: 599 EAPKNLSVGGIIAGPSDSVSEPETVRRLDPGQLSFKYIFMAVFILL--TAAYLFQQQNRQ 656

Query: 617 F 617
           F
Sbjct: 657 F 657

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585599|ref|XP_002533487.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis] gi|223526649|gb|EEF28891.1| DNA double-strand break repair rad50 ATPase, putative [Ricinus communis]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 347/638 (54%), Positives = 462/638 (72%), Gaps = 35/638 (5%)

Query: 1   MDTDADQETSASVV-VNVGDSESESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIAC 59
           MD++   E S S+  VN  D E+ES+KV  +  +S+NG++  EL    +  +++EL +AC
Sbjct: 1   MDSEVSAEVSVSIDDVNSADPEAESSKVDLVVEMSSNGEISSELGIVHKFLTRMELDLAC 60

Query: 60  SSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELEN 119
           +SEKLVNL++L MH+AT+ESEFE  A +     + DSVE AL FDLLS +LDSEL EL+ 
Sbjct: 61  ASEKLVNLSVLMMHLATKESEFETIASQ-----EGDSVE-ALEFDLLSRILDSELTELDK 114

Query: 120 FITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRT 179
           F+ T + + V+  ++ISSY  LG+  + MEEKL DSE +L+Q +DQI EI++QS +FQ+T
Sbjct: 115 FMITSQKNIVEVRKMISSYEHLGEMFMAMEEKLCDSEKALEQLQDQISEIREQSVRFQKT 174

Query: 180 LSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKL 239
           LS L+ E +W  + ++  LED QFL+ NAKIK+QTAEQQRHFLRMLEKSLAREMDLE KL
Sbjct: 175 LSCLNGEEHWHGNDESNFLEDSQFLDTNAKIKMQTAEQQRHFLRMLEKSLAREMDLENKL 234

Query: 240 TESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVL 299
           TES+ +EE LK RL S EQE+ + EEEA+D CER F AEN+AEVLKGIS+ELL RLQ++ 
Sbjct: 235 TESKHMEEELKHRLISTEQEVFFMEEEAIDICERCFMAENAAEVLKGISQELLSRLQMLQ 294

Query: 300 FNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLR--------------ENLSEAQARAD 345
           F++NGS+QRE  LRS+L+  ++Q+E KE+ +  L               +NL  +   A+
Sbjct: 295 FSLNGSIQRETELRSRLEKSLEQLEGKENALQKLNSSSAKLKDSLLSQTDNLKASLTEAE 354

Query: 346 GAEVRCKSLAETNIE-LN------EDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEA 398
              +   S A T  E LN      E++   + TSEKV+SLE+ LRESDIQLQHAVA  +A
Sbjct: 355 DKLILANSEALTFREKLNSLEKQLEEMGHLKLTSEKVDSLEKLLRESDIQLQHAVASVDA 414

Query: 399 SLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDR 458
           S EKQNMLY+T++DMENLI+DLKLKV KA++RADSAE+K IILSE+NA L EE+SFLR +
Sbjct: 415 SEEKQNMLYATIRDMENLIKDLKLKVLKAETRADSAEDKCIILSESNAELAEEMSFLRGK 474

Query: 459 LECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVK 518
           L CLE+SL++AEETK ATA+DIGIRTKV+ +LVMQ+ +ERERL++Q++SLA++NK +VVK
Sbjct: 475 LVCLESSLNRAEETKNATARDIGIRTKVVMDLVMQLGIERERLQKQMTSLALDNKTLVVK 534

Query: 519 LQQTKKDPSIV-----RHDSTTASFERESKEVTELSAAVSEEDKRQKNVSAGETEVASVD 573
           LQQT+K P +V     R +     F    K  T++SAA  + DK +KN S  +TE+A+ D
Sbjct: 535 LQQTEKAPFVVPNHLHRENGEKHLFAEHVK--TQISAAGPKVDKTKKNASGSQTEMAAAD 592

Query: 574 LKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQ 611
              E GT+RRIDA +L+SKH F+AV I+LISAA Y FQ
Sbjct: 593 SILEPGTVRRIDARVLSSKHVFMAVFILLISAAVYLFQ 630

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683605|ref|NP_196700.2| WPP domain-interacting tail-anchored protein 1 [Arabidopsis thaliana] gi|205830837|sp|Q8L7E5.2|WIT1_ARATH RecName: Full=WPP domain-interacting tail-anchored protein 1 gi|332004288|gb|AED91671.1| WPP domain-interacting tail-anchored protein 1 [Arabidopsis thaliana]

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 288/711 (40%), Positives = 421/711 (59%), Gaps = 106/711 (14%)

Query: 1   MDTDADQETSASVVVNVGDS---ESESNKVYSLEGISANGDVI-EELRSAGEVFSQLELH 56
           M+T+ + + + SV  N  DS   E  S K    E +S  G V+  +L SAGEV +++EL 
Sbjct: 1   METETEHDRTVSVDDN--DSLVPEPSSTKESFFEDLSLTGQVMNPQLSSAGEVLTKVELD 58

Query: 57  IACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDS---------VETALAFDLLS 107
            A  SEKLVNL++LTM + TRE++FE+F  K+E   ++ S          E AL FDLLS
Sbjct: 59  FAFVSEKLVNLSLLTMQLGTRENDFESFVSKKEEDEEEPSSNVDDDDDSAEKALEFDLLS 118

Query: 108 GLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQIL 167
            +L+SE++ELE+ +  L+ +   A  +IS +   G+A +++E KL D+E SL Q  +Q++
Sbjct: 119 SILNSEVKELESLLGFLQNEIQSARVMISPFQHDGEAFLDLEGKLNDTEQSLGQLMEQVV 178

Query: 168 EIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEK 227
           E+KKQS+ FQR  S LD +G+W   + + S  D +F + +AKI +QTA+QQR+ LRMLEK
Sbjct: 179 EMKKQSSNFQRLSSGLDEQGSWSGGQTSVSQNDGEFGDLSAKINMQTADQQRNVLRMLEK 238

Query: 228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGI 287
           SLA+EM+LEKKL+ESR  E  L+ +L S EQ+++Y EE   DA  R  EA+N+AEV KG 
Sbjct: 239 SLAKEMELEKKLSESRNTERELEMKLYSSEQDVVYMEEVTEDAFSRWLEADNAAEVFKGT 298

Query: 288 SKELLGRLQIVLFNMNGSVQREAGLRSKL-------------------------DSLVKQ 322
           SKE+ G+LQI+ FN++GS +RE  L+SKL                         D LV Q
Sbjct: 299 SKEMSGKLQILQFNLSGSFKREDNLKSKLVDSKERLEAKECALHKLDSSNARLADFLVAQ 358

Query: 323 VE-VKESV--------------------IASLRENLSEAQARADGAEVRCKSLAETNIE- 360
            E +KES+                    ++SL E L+E   + + A+    +L  T++E 
Sbjct: 359 TEGLKESLQEAEEKLILLNTENSTLSEKVSSLEEQLNEYGIQTEDADATSGALI-TDLER 417

Query: 361 LNEDLKGSRATSE-----------------------------------KVESLERQLRES 385
           +NE+LK   A +E                                   K+ SLE+ LR+S
Sbjct: 418 INEELKDKLAKTEARAEETESKCKILEESKKELQDELGNFRDKGFTIHKLASLEKHLRDS 477

Query: 386 DIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEAN 445
           D+QL+HAVA  EAS EKQN+LYSTV DME++I+DLK KV KA++RAD  EEKLI++SE+N
Sbjct: 478 DLQLEHAVAAVEASKEKQNLLYSTVSDMEDVIEDLKSKVLKAENRADITEEKLIMVSESN 537

Query: 446 AGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQI 505
           A + EE+ F + RL+  E  L QAEE KL TAKDIG+  K++  LVMQ+A ERERL +QI
Sbjct: 538 AEVNEELKFFKGRLKEGEKYLQQAEERKLRTAKDIGVHNKIMKKLVMQLAAERERLHKQI 597

Query: 506 SSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKN--VS 563
           ++L+ EN V++VKL++  K   +   + +  S +      ++ +A+   +  R +   +S
Sbjct: 598 TNLSRENCVLMVKLKKVGKTGYMESGNGSEVSPK------SDQNASSCHQGSRLQATFIS 651

Query: 564 AGETEVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQN 614
               E      KS++G++RR+D G L  KH  +A+L++LIS+ AY   +QN
Sbjct: 652 LTNPEEEETGSKSDIGSVRRLDVGALRFKHILVAILVILISSIAYVISQQN 702

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22530926|gb|AAM96967.1| putative protein [Arabidopsis thaliana] gi|23198372|gb|AAN15713.1| putative protein [Arabidopsis thaliana]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 287/711 (40%), Positives = 421/711 (59%), Gaps = 106/711 (14%)

Query: 1   MDTDADQETSASVVVNVGDS---ESESNKVYSLEGISANGDVI-EELRSAGEVFSQLELH 56
           M+T+ + + + SV  N  DS   E  S K    E +S  G V+  +L SAGEV +++EL 
Sbjct: 1   METETEHDRTVSVDDN--DSLVPEPSSTKESFFEDLSLTGQVMNPQLSSAGEVLTKVELD 58

Query: 57  IACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDS---------VETALAFDLLS 107
            A  SEKLVNL++LTM + TRE++FE+F  K+E   ++ S          E AL FDLLS
Sbjct: 59  FAFVSEKLVNLSLLTMQLGTRENDFESFVSKKEEDEEEPSSNVDDDDDSAEKALEFDLLS 118

Query: 108 GLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQIL 167
            +L+SE++ELE+ +  L+ +   A  +IS +   G+A +++E KL D+E SL Q  +Q++
Sbjct: 119 SILNSEVKELESLLGFLQNEIQSARVMISPFQHDGEAFLDLEGKLNDTEQSLGQLMEQVV 178

Query: 168 EIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEK 227
           E+KKQS+ FQR  S LD +G+W   + + S  D +F + +AKI +QTA+QQR+ LR+LEK
Sbjct: 179 EMKKQSSNFQRLSSGLDEQGSWSGGQTSVSQNDGEFGDLSAKINMQTADQQRNVLRILEK 238

Query: 228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGI 287
           SLA+EM+LEKKL+ESR  E  L+ +L S EQ+++Y EE   DA  R  EA+N+AEV KG 
Sbjct: 239 SLAKEMELEKKLSESRNTERELEMKLYSSEQDVVYMEEVTEDAFSRWLEADNAAEVFKGT 298

Query: 288 SKELLGRLQIVLFNMNGSVQREAGLRSKL-------------------------DSLVKQ 322
           SKE+ G+LQI+ FN++GS +RE  L+SKL                         D LV Q
Sbjct: 299 SKEMSGKLQILQFNLSGSFKREDNLKSKLVDSKERLEAKECALHKLDSSNARLADFLVAQ 358

Query: 323 VE-VKESV--------------------IASLRENLSEAQARADGAEVRCKSLAETNIE- 360
            E +KES+                    ++SL E L+E   + + A+    +L  T++E 
Sbjct: 359 TEGLKESLQEAEEKLILLNTENSTLSEKVSSLEEQLNEYGIQTEDADATSGALI-TDLER 417

Query: 361 LNEDLKGSRATSE-----------------------------------KVESLERQLRES 385
           +NE+LK   A +E                                   K+ SLE+ LR+S
Sbjct: 418 INEELKDKLAKTEARAEETESKCKILEESKKELQDELGNFRDKGFTIHKLASLEKHLRDS 477

Query: 386 DIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEAN 445
           D+QL+HAVA  EAS EKQN+LYSTV DME++I+DLK KV KA++RAD  EEKLI++SE+N
Sbjct: 478 DLQLEHAVAAVEASKEKQNLLYSTVSDMEDVIEDLKSKVLKAENRADITEEKLIMVSESN 537

Query: 446 AGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQI 505
           A + EE+ F + RL+  E  L QAEE KL TAKDIG+  K++  LVMQ+A ERERL +QI
Sbjct: 538 AEVNEELKFFKGRLKEGEKYLQQAEERKLRTAKDIGVHNKIMKKLVMQLAAERERLHKQI 597

Query: 506 SSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKN--VS 563
           ++L+ EN V++VKL++  K   +   + +  S +      ++ +A+   +  R +   +S
Sbjct: 598 TNLSRENCVLMVKLKKVGKTGYMESGNGSEVSPK------SDQNASSCHQGSRLQATFIS 651

Query: 564 AGETEVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQN 614
               E      KS++G++RR+D G L  KH  +A+L++LIS+ AY   +QN
Sbjct: 652 LTNPEEEETGSKSDIGSVRRLDVGALRFKHILVAILVILISSIAYVISQQN 702

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551059|ref|XP_003543896.1| PREDICTED: WPP domain-interacting tail-anchored protein 1-like [Glycine max]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/550 (47%), Positives = 354/550 (64%), Gaps = 57/550 (10%)

Query: 26  KVYSLEG---ISANGDVIEELRSA-GEVFSQLELHIACSSEKLVNLNILTMHVATRESEF 81
           +V  LEG    S++G+V+ +L      +   L+L +AC SEK+ NL+   MHV T E EF
Sbjct: 11  RVVDLEGGVVSSSSGNVMGDLVDVYSTMLKNLDLGLACFSEKVFNLSNFLMHVETMECEF 70

Query: 82  EAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTEL 141
           EA  +K +HI     +E  L FDLLSG+ DSE+RELE  + TL+    +A + +SS T L
Sbjct: 71  EAL-EKEDHI---GYLEKGLEFDLLSGVFDSEVRELEGVLDTLQGGVGEARDWVSSCTHL 126

Query: 142 GKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDD 201
           G+A + M+EKL+  E  L+QS ++  +IK QS  FQRTL +L +E N   D      EDD
Sbjct: 127 GEAFVAMQEKLVGYEQRLKQSEEEFNDIKMQSVSFQRTLPSLKKEENGNDDASEIITEDD 186

Query: 202 QFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELL 261
           + L+ NA+I+LQT EQQRH LRMLEKSLAREMDLEK + +SR+++E L+ R+   EQEL 
Sbjct: 187 KSLSANAEIRLQTVEQQRHILRMLEKSLAREMDLEKDINDSREIQENLRLRMFFSEQELD 246

Query: 262 YTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRS------- 314
             EEEA+D  ER  EA+N++E+L GIS+ LLGRL I  F++NG   RE+ LR+       
Sbjct: 247 NMEEEAIDVWERWLEADNTSEILLGISQGLLGRLHISQFSLNGLSHRESELRANLKDAED 306

Query: 315 --------------KLDSLVKQVEVKE----------------------------SVIAS 332
                         K+ SL KQ++  E                            ++I  
Sbjct: 307 KLTFSNSEASALSNKVSSLEKQLKESEFQLLNAKASADEYQKQYNVQCSEARDMGNIIVE 366

Query: 333 LRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHA 392
           L+E +S A++RA  AE +C+ L ETN +L+E+L   R  + + E LER+L+ES+++LQ  
Sbjct: 367 LKEAVSNAESRAISAETKCQLLTETNSKLDEELALLRGATTRAELLERKLKESNLRLQKT 426

Query: 393 VAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEI 452
           VA A+AS EKQ+ LYST++DMEN+I+DLK KVSKA  RADSAE+  IILSE+NA L EE+
Sbjct: 427 VASAKASQEKQSNLYSTIRDMENVIKDLKSKVSKAQGRADSAEDNCIILSESNAELNEEL 486

Query: 453 SFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMEN 512
           SFLR RLE LE SL + EE K+AT +DIG + KV   LV Q+AVERERL+QQISSLA EN
Sbjct: 487 SFLRSRLESLEGSLQREEEVKMATVEDIGKQAKVFKKLVTQLAVERERLKQQISSLAREN 546

Query: 513 KVMVVKLQQT 522
           K++V+KL+QT
Sbjct: 547 KILVLKLKQT 556

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573609|ref|XP_003554950.1| PREDICTED: WPP domain-interacting tail-anchored protein 1-like [Glycine max]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 260/554 (46%), Positives = 347/554 (62%), Gaps = 69/554 (12%)

Query: 27  VYSLEGI---SANGDVIEELRSAGEVFS----QLELHIACSSEKLVNLNILTMHVATRES 79
           V  LEG+   S +G+V+ +L   G+V+S     L+L +AC SEK+ NL+   MHV T+E 
Sbjct: 12  VVDLEGVAVSSPSGNVMGDL---GDVYSTMLTSLDLGLACFSEKVSNLSNFVMHVETKEC 68

Query: 80  EFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYT 139
           E EA  +K +HI      E  L FDLLS +LDSE+RELE  + TL+    +A E   S T
Sbjct: 69  ELEAL-EKEDHI-----GEKGLEFDLLSVVLDSEVRELEGVLDTLQGGVDEAREWGCSCT 122

Query: 140 ELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSL- 198
            LG+  + M+EKL D E  L+Q  ++   IK QSA FQR LS+L +  N   + D G + 
Sbjct: 123 HLGEGFVAMQEKLGDYEQQLKQFEEEFNGIKMQSASFQRNLSSLKKAEN--GNGDAGEII 180

Query: 199 -EDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFE 257
            EDD+ L+ NA+IKLQT EQQRH LRMLEKSLAREMDLEK + +SR+++E L+ ++   E
Sbjct: 181 REDDKSLSANAEIKLQTVEQQRHILRMLEKSLAREMDLEKDINDSREIQENLRLKMFFSE 240

Query: 258 QELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKL- 316
           QE +  E EA+D  ER  EA+N++E+L GISK LLG+L I  F++NG   RE+ LR+ L 
Sbjct: 241 QEFVNMEGEAIDVWERWLEADNASEILLGISKGLLGKLHISQFSLNGQSHRESELRANLK 300

Query: 317 -----------------------------------------DSLVKQVEVK-------ES 328
                                                    D   KQ  VK        S
Sbjct: 301 DAEDKLTFANSEVSALSNKVSSLEKQLKESEFQLLNAKASADEYQKQYNVKCSEARDMGS 360

Query: 329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQ 388
           VI  L+E +  A++RA+ AE +CK L ETN +L+E+L   R +S + E LERQL+ES+++
Sbjct: 361 VIVELKEAVYNAESRANSAETKCKLLTETNSKLDEELALLRGSSTRAELLERQLKESNLR 420

Query: 389 LQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGL 448
           LQ   A A+ S EKQ+ LYST++DMEN+I+DLK KVSKA+ RADS E+  IILSE+NA L
Sbjct: 421 LQKMTASAKGSQEKQSKLYSTIRDMENVIKDLKSKVSKAEGRADSTEDNCIILSESNAEL 480

Query: 449 TEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSL 508
            EE+SF+R RLE LE SL + EE K+AT +DIG + K    LV Q+AVERERL+Q+ISSL
Sbjct: 481 NEELSFMRSRLESLEGSLQREEEVKMATVEDIGKQAKFFKKLVTQLAVERERLKQKISSL 540

Query: 509 AMENKVMVVKLQQT 522
           A ENK++V KL+QT
Sbjct: 541 ASENKILVQKLKQT 554

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834282|emb|CAN67491.1| hypothetical protein VITISV_035977 [Vitis vinifera]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 249/467 (53%), Positives = 322/467 (68%), Gaps = 22/467 (4%)

Query: 1   MDTDADQETSASVV-VNVGDSESESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIAC 59
           MD +   + +ASV  +N  D E+E N +   EGIS+ G+V+ E+ +A EV  ++EL +AC
Sbjct: 1   MDAETVLDATASVDDINTSDPEAEXNNMDLHEGISSYGEVMLEVGNATEVLKRVELDLAC 60

Query: 60  SSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELEN 119
           SSEKL NL+ILTMHVATRES+FEAFA + EH+LDD SV+ AL FDLLSG+LDSE+RE++N
Sbjct: 61  SSEKLFNLSILTMHVATRESDFEAFASEEEHVLDD-SVQKALEFDLLSGILDSEVREVDN 119

Query: 120 FITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRT 179
           F+T L+ D    HE++SS   LG A +EMEEKL DS+  L+QS+D + EI+ QSAKFQRT
Sbjct: 120 FMTXLQKDVAHTHEILSSCENLGGAFMEMEEKLHDSDVLLKQSQDHVSEIRMQSAKFQRT 179

Query: 180 LSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKL 239
           L   D EG W +DK    LE+ +F N N KIK+QTAEQQR  LRMLEKSLARE+DLEKKL
Sbjct: 180 LLCFDGEGKWNNDKGMDLLENSEFSNMNTKIKMQTAEQQRDILRMLEKSLARELDLEKKL 239

Query: 240 TESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVL 299
            ESRQ+EE L  RL S EQE+L+ EEE     ERLFEAEN+AEVLKGISKEL GRLQI  
Sbjct: 240 AESRQLEEELTLRLHSLEQEVLFMEEEEAIVWERLFEAENAAEVLKGISKELRGRLQIFQ 299

Query: 300 FNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETN- 358
           FN+NGS++RE  L+SKL    K+VE KE  +  L          +  AE+    + +TN 
Sbjct: 300 FNLNGSMKREGELKSKLQGSTKEVEDKEDALLKL---------ESSSAELHDFLIQQTNN 350

Query: 359 ----IELNED---LKGSRATS--EKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYST 409
               +   ED   L  S A +  EKV SLE QL+ES+ QL +A A  + + E Q+ LYS 
Sbjct: 351 LKASLREAEDKLILSNSEAFTLREKVSSLENQLKESEFQLMNAKASVDGNQE-QHPLYSQ 409

Query: 410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLR 456
           + +MEN++ +LK ++SKA+SRA+SAE K  +L E N  L++E+  LR
Sbjct: 410 LSEMENVVINLKERISKAESRAESAEAKCKLLMETNMELSDELVLLR 456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451869|ref|XP_002278644.1| PREDICTED: WPP domain-interacting tail-anchored protein 1-like [Vitis vinifera]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 245/467 (52%), Positives = 320/467 (68%), Gaps = 29/467 (6%)

Query: 1   MDTDADQETSASVV-VNVGDSESESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIAC 59
           MD +   + +ASV  +N  D E+E N +   EGIS+ G+V+ E+ +A EV  ++EL +AC
Sbjct: 1   MDAETVLDATASVDDINTSDPEAEENNMDLHEGISSYGEVMLEVGNATEVLKRVELDLAC 60

Query: 60  SSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLLSGLLDSELRELEN 119
           SSEKL NL+ILTMHVATRES+FEAFA + EH+LDD SV+ AL FDLLSG+LDSE+RE++N
Sbjct: 61  SSEKLFNLSILTMHVATRESDFEAFASEEEHVLDD-SVQKALEFDLLSGILDSEVREVDN 119

Query: 120 FITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRT 179
           F+TTL+ D    HE++SS   LG A +EMEEKL DS+  L+QS+D + EI+ QSAKFQRT
Sbjct: 120 FMTTLQKDVAHTHEILSSCENLGGAFMEMEEKLHDSDVLLKQSQDHVSEIRMQSAKFQRT 179

Query: 180 LSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKL 239
           L        W +DK    LE+ +F N N KIK+QTAEQQR  LRMLEKSLARE+D+EKKL
Sbjct: 180 LL-------WNNDKGMDLLENSEFSNMNTKIKMQTAEQQRDILRMLEKSLARELDVEKKL 232

Query: 240 TESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVL 299
            ESRQ+EE LK RL S EQE+ + EEE     ERLFEAEN+AEVLKGISKEL GRLQI  
Sbjct: 233 AESRQLEEELKLRLHSLEQEVFFMEEEEAIVWERLFEAENAAEVLKGISKELRGRLQIFQ 292

Query: 300 FNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETN- 358
           FN+NGS++RE  L+SKL    K+VE KE  +  L          +  AE+    + +TN 
Sbjct: 293 FNLNGSMKREGELKSKLQGSTKEVEDKEDALLKL---------ESSSAELHDFLIQQTNN 343

Query: 359 ----IELNED---LKGSRATS--EKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYST 409
               +   ED   L  S A +  EKV SLE QL+ES+ QL +A A  + + E Q+ LYS 
Sbjct: 344 LKASLREAEDKLILSNSEAFTLREKVSSLENQLKESEFQLMNAKASVDGNQE-QHPLYSQ 402

Query: 410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLR 456
           + +M+N++ +LK ++SKA+SRA+SAE K  +L E N  L++E+  LR
Sbjct: 403 LSEMKNVVINLKERISKAESRAESAEAKCKLLMETNMELSDELVLLR 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8953401|emb|CAB96674.1| putative protein [Arabidopsis thaliana]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 279/717 (38%), Positives = 410/717 (57%), Gaps = 125/717 (17%)

Query: 1   MDTDADQETSASVVVNVGDS---ESESNKVYSLEGISANGDVI-EELRSAGEVFSQLELH 56
           M+T+ + + + SV  N  DS   E  S K    E +S  G V+  +L SAGEV +++EL 
Sbjct: 1   METETEHDRTVSVDDN--DSLVPEPSSTKESFFEDLSLTGQVMNPQLSSAGEVLTKVELD 58

Query: 57  IACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDS---------VETALAFDLLS 107
            A  SEKLVNL++LTM + TRE++FE+F  K+E   ++ S          E AL FDLLS
Sbjct: 59  FAFVSEKLVNLSLLTMQLGTRENDFESFVSKKEEDEEEPSSNVDDDDDSAEKALEFDLLS 118

Query: 108 GLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQIL 167
            +L+SE++ELE+ +  L+ +   A  +IS +   G+A +++E KL D+E SL Q  +Q++
Sbjct: 119 SILNSEVKELESLLGFLQNEIQSARVMISPFQHDGEAFLDLEGKLNDTEQSLGQLMEQVV 178

Query: 168 EIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEK 227
           E+KKQS+ FQR  S LD +G+W   + + S  D +F + +AKI +QTA+QQR+ LRMLEK
Sbjct: 179 EMKKQSSNFQRLSSGLDEQGSWSGGQTSVSQNDGEFGDLSAKINMQTADQQRNVLRMLEK 238

Query: 228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGI 287
           SLA+EM+LEKKL+ESR  E  L+ +L S EQ+++Y EE   DA  R  EA+N+AEV KG 
Sbjct: 239 SLAKEMELEKKLSESRNTERELEMKLYSSEQDVVYMEEVTEDAFSRWLEADNAAEVFKGT 298

Query: 288 SKELLGRLQIVLFNMNGSVQREAGLRSKL-------------------------DSLVKQ 322
           SKE+ G+LQI+ FN++GS +RE  L+SKL                         D LV Q
Sbjct: 299 SKEMSGKLQILQFNLSGSFKREDNLKSKLVDSKERLEAKECALHKLDSSNARLADFLVAQ 358

Query: 323 VE-VKESV--------------------IASLRENLSEAQARADGAEVRCKSLAETNIE- 360
            E +KES+                    ++SL E L+E   + + A+    +L  T++E 
Sbjct: 359 TEGLKESLQEAEEKLILLNTENSTLSEKVSSLEEQLNEYGIQTEDADATSGALI-TDLER 417

Query: 361 LNEDLKGSRATSE-----------------------------------KVESLERQLRES 385
           +NE+LK   A +E                                   K+ SLE+ LR+S
Sbjct: 418 INEELKDKLAKTEARAEETESKCKILEESKKELQDELGNFRDKGFTIHKLASLEKHLRDS 477

Query: 386 DIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEAN 445
           D+QL+HAVA  EAS EKQN+LYSTV DME++I+DLK KV KA++RAD  EEKLI++SE+N
Sbjct: 478 DLQLEHAVAAVEASKEKQNLLYSTVSDMEDVIEDLKSKVLKAENRADITEEKLIMVSESN 537

Query: 446 AGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTK------VITNLVMQMAVERE 499
           A + EE+ F + RL+  E  L QAEE KL TAKDIG+         ++T L         
Sbjct: 538 AEVNEELKFFKGRLKEGEKYLQQAEERKLRTAKDIGLHHHHSGFLDIVTYL--------- 588

Query: 500 RLRQQISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQ 559
               QI++L+ EN V++VKL++  K   +   + +  S +      ++ +A+   +  R 
Sbjct: 589 ----QITNLSRENCVLMVKLKKVGKTGYMESGNGSEVSPK------SDQNASSCHQGSRL 638

Query: 560 KN--VSAGETEVASVDLKSEVGTLRRIDAGLLTSKHFFIAVLIVLISAAAYYFQKQN 614
           +   +S    E      KS++G++RR+D G L  KH  +A+L++LIS+ AY   +QN
Sbjct: 639 QATFISLTNPEEEETGSKSDIGSVRRLDVGALRFKHILVAILVILISSIAYVISQQN 695

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502641|ref|XP_003621609.1| WPP domain-interacting tail-anchored protein [Medicago truncatula] gi|355496624|gb|AES77827.1| WPP domain-interacting tail-anchored protein [Medicago truncatula]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 276/631 (43%), Positives = 368/631 (58%), Gaps = 94/631 (14%)

Query: 47  GEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDSVETALAFDLL 106
           GEV    E+ +   SEK+ NL+I  M++ T E E E      E+I D D V     FDLL
Sbjct: 22  GEVIVDFEMSVVYFSEKVSNLSIFMMNLETLEGELEGLVCDEENI-DMDCVLKGFEFDLL 80

Query: 107 SGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQI 166
            G++DSE+ +L  F+ TL A+   + E  SS           +E+L++SE+       Q 
Sbjct: 81  CGVMDSEVGDLGLFLDTLHAEISGSRERDSSLNN-------WQERLVESEE-------QF 126

Query: 167 LEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLE 226
            EIKKQS  F+RTLS+  +E N   + D    EDDQ  N N  + +QT EQ R+ LRMLE
Sbjct: 127 YEIKKQSFSFERTLSSYKKEENGNVEDDGNVQEDDQTSNVNNMMNMQTTEQHRNILRMLE 186

Query: 227 KSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLK- 285
           KSLA E+DLEK   +S+++EE L  R+ S E EL+ TEEEA++  ER FEA+N+ E+LK 
Sbjct: 187 KSLANEIDLEKNFNDSKKIEEKLNLRILSLEDELIQTEEEAIEVWERFFEADNAREILKG 246

Query: 286 -----------------GISK---ELLGRLQ----------IVLFNMNGSVQREAGLRSK 315
                            G+ K   EL  +L+          + L  +  S      L  K
Sbjct: 247 ISNEVLAKLKLSQFNLVGLRKSESELRDKLETSIEQLKSRDVNLEKIESSAAEAVNLGDK 306

Query: 316 LDSLVKQ--------VEVK--------------------ESVIASLRENLSEAQARADGA 347
           + SL KQ        V VK                    +++I  L+EN   A+ +A+ A
Sbjct: 307 VCSLEKQLQETECQLVNVKVSADEYQQQYNVVCSQVRDMDNLIVELKENAKNAENQANAA 366

Query: 348 EVRCKSLAETNIELNEDL---KGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQN 404
           EV+CK L ETN ELN++L   K    TSE VE LERQL+E+D+QLQ AVA A AS EKQ 
Sbjct: 367 EVQCKKLTETNEELNKELTLLKDCGITSESVELLERQLKETDLQLQQAVASAGASEEKQK 426

Query: 405 MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEA 464
           ML  T++DME++I+DLK KVSKA+S ADSAE+K IILSE+NA L EE+SFLR RLECLE 
Sbjct: 427 MLCYTIEDMEHVIKDLKSKVSKAESLADSAEDKCIILSESNADLNEEVSFLRSRLECLEG 486

Query: 465 SLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKK 524
           SLH+AEE  + TAKDIG + KV  +LV Q+A+ERERL +++SSLA ENK++VVKL+QT K
Sbjct: 487 SLHKAEEANMTTAKDIGKQIKVFKSLVTQLALERERLIKKLSSLASENKILVVKLRQTYK 546

Query: 525 DPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKNVSAGETEVASVDLKSEVGTLRRI 584
                            SKEV    ++  E +K  KN SA + EV S D   +VGT+RRI
Sbjct: 547 GS---------------SKEVGATFSSEHEGNKTSKNSSANDNEVKS-DSIPDVGTVRRI 590

Query: 585 DAGLLTSKHFFIAVLIVLISAAAY-YFQKQN 614
           DAG+LT KH  I++ ++L+SA  + YF+  N
Sbjct: 591 DAGVLTFKHLLISLFVLLLSAVTFLYFKDLN 621

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	617
TAIR|locus:2148057	703	WIT1 "AT5G11390" [Arabidopsis	0.811	0.712	0.395	8.5e-81
TAIR|locus:2205470	627	WIT2 "AT1G68910" [Arabidopsis	0.795	0.783	0.296	3.3e-47
TAIR|locus:2207230	790	AT1G05320 "AT1G05320" [Arabido	0.896	0.7	0.257	1.6e-23
UNIPROTKB|F1NDQ5	1891	CCDC88A "Uncharacterized prote	0.824	0.269	0.231	1.9e-14
TAIR|locus:2045412	1333	AT2G32240 "AT2G32240" [Arabido	0.880	0.407	0.216	4.4e-14
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.922	0.358	0.222	5.5e-14
UNIPROTKB|F8W6D3	1276	NIN "Ninein" [Homo sapiens (ta	0.852	0.412	0.25	8.8e-14
ASPGD|ASPL0000038802	1207	pcpA [Emericella nidulans (tax	0.794	0.405	0.231	1e-13
ZFIN|ZDB-GENE-101124-2	1972	myh11b "myosin, heavy polypept	0.844	0.264	0.222	1.5e-13
ZFIN|ZDB-GENE-040801-25	1136	tmf1 "TATA element modulatory	0.842	0.457	0.234	1.6e-13

TAIR|locus:2148057 WIT1 "AT5G11390" [Arabidopsis thaliana (taxid:3702)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 215/544 (39%), Positives = 317/544 (58%)

Query:     1 MDTDADQETSASVVVNVGDS---ESESNKVYSLEGISANGDVIE-ELRSAGEVFSQLELH 56
             M+T+ + + + SV  N  DS   E  S K    E +S  G V+  +L SAGEV +++EL 
Sbjct:     1 METETEHDRTVSVDDN--DSLVPEPSSTKESFFEDLSLTGQVMNPQLSSAGEVLTKVELD 58

Query:    57 IACSSEKLVNLNILTMHVATRESEFEAFAKKREHIL---------DDDSVETALAFDLLS 107
              A  SEKLVNL++LTM + TRE++FE+F  K+E            DDDS E AL FDLLS
Sbjct:    59 FAFVSEKLVNLSLLTMQLGTRENDFESFVSKKEEDEEEPSSNVDDDDDSAEKALEFDLLS 118

Query:   108 GLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQIL 167
              +L+SE++ELE+ +  L+ +   A  +IS +   G+A +++E KL D+E SL Q  +Q++
Sbjct:   119 SILNSEVKELESLLGFLQNEIQSARVMISPFQHDGEAFLDLEGKLNDTEQSLGQLMEQVV 178

Query:   168 EIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEK 227
             E+KKQS+ FQR  S LD +G+W   + + S  D +F + +AKI +QTA+QQR+ LRMLEK
Sbjct:   179 EMKKQSSNFQRLSSGLDEQGSWSGGQTSVSQNDGEFGDLSAKINMQTADQQRNVLRMLEK 238

Query:   228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGI 287
             SLA+EM+LEKKL+ESR  E  L+ +L S EQ+++Y EE   DA  R  EA+N+AEV KG 
Sbjct:   239 SLAKEMELEKKLSESRNTERELEMKLYSSEQDVVYMEEVTEDAFSRWLEADNAAEVFKGT 298

Query:   288 SKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQAR-ADG 346
             SKE+ G+LQI+ FN++GS +RE  L+SKL    +++E KE  +      L  + AR AD 
Sbjct:   299 SKEMSGKLQILQFNLSGSFKREDNLKSKLVDSKERLEAKECAL----HKLDSSNARLADF 354

Query:   347 AEVRCKSLAETNIELNEDL---KGSRAT-SEKVESLERQLRESDIQLQHAVAYAEASLEK 402
                + + L E+  E  E L       +T SEKV SLE QL E  IQ + A A + A    
Sbjct:   355 LVAQTEGLKESLQEAEEKLILLNTENSTLSEKVSSLEEQLNEYGIQTEDADATSGA---- 410

Query:   403 QNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDR---- 458
                    + D+E + ++LK K++K ++RA+  E K  IL E+   L +E+   RD+    
Sbjct:   411 ------LITDLERINEELKDKLAKTEARAEETESKCKILEESKKELQDELGNFRDKGFTI 464

Query:   459 --LECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISS--LAMENKV 514
               L  LE  L  ++  +L  A      +K   NL+     + E + + + S  L  EN+ 
Sbjct:   465 HKLASLEKHLRDSD-LQLEHAVAAVEASKEKQNLLYSTVSDMEDVIEDLKSKVLKAENRA 523

Query:   515 MVVK 518
              + +
Sbjct:   524 DITE 527

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2205470 WIT2 "AT1G68910" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 159/536 (29%), Positives = 284/536 (52%)

Query:    41 EELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDD--SVE 98
             EE +    + ++LE+  A +SEKL+NL++L MH+   +++ E         LD    S E
Sbjct:    18 EEEQEMLRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEGMGT-----LDSSPASFE 72

Query:    99 TALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDS 158
              AL FDLL G+L+SE++E++  +  LEA  V     ISS    G   I +E KL +S +S
Sbjct:    73 KALTFDLLCGILESEVKEVDEVLDVLEAQIVDTSYKISSCKH-GNY-IVIEGKLGESAES 130

Query:   159 LQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAE-Q 217
             L+QSR Q+ EI  Q A+ +RTL       ++I +   G+ E+++ +    K  L+ ++ +
Sbjct:   131 LKQSRGQVSEITLQLAQLRRTL-------HYIRN---GTSENEESVELRQKYALKPSDLR 180

Query:   218 QRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDAC-ERLFE 276
              ++ LRMLEKSL+RE++LEKKL E +Q EE LK +L  + +E+    EEA +    R  E
Sbjct:   181 HKNALRMLEKSLSRELELEKKLMEFQQNEEQLKLKL-HYTEEVSSRMEEASEFIWGRFLE 239

Query:   277 AENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLREN 336
             A+NS+EVL GISKEL+GRLQI+ F++NGS QRE+ L+SKL+    Q+E K+ ++  L   
Sbjct:   240 ADNSSEVLTGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGT 299

Query:   337 LSE-AQARADGAEVR--CKSLAETNIELNE-DLKGSRATSEKV-------ESLERQLRES 385
             +SE ++  ++   +R   KS AE  ++  + +LK   A+ +++       E+    ++E+
Sbjct:   300 ISENSEIVSEVLTLREYVKS-AEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKEN 358

Query:   386 DIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEAN 445
               + +      EA +++ +     + +  N ++D   K +K  +  +    +L +  + N
Sbjct:   359 LFEAESRAESGEAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQ-N 417

Query:   446 AGLTEEISFLRDRLECLEASLHQAE---ETKLATAKDIGIRTKVITNLVMQMAVERERLR 502
             + ++ E +  +++   L +++   E   E   + A     RT+ +    + ++     L 
Sbjct:   418 SKVSSEAN--QEQQNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELN 475

Query:   503 QQISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKR 558
             + +S L  + K +   L     +      + TT      +K + ++   +S E +R
Sbjct:   476 KDVSFLRQKAKSLEAMLDLANNEKERYAQEITT-----RNKVLMDMMLQLSSERER 526

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2207230 AT1G05320 "AT1G05320" [Arabidopsis thaliana (taxid:3702)]

 Score = 302 (111.4 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 155/603 (25%), Positives = 279/603 (46%)

Query:    19 DSESESNKVYSLEGISANGDVI-EELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATR 77
             D E    ++ SLE      DV  +EL    E F  L L +  S +K++ L    + ++  
Sbjct:    53 DDEKAEKQLKSLEDALQLHDVKHKELTEVKEAFDGLGLELENSRKKMIELED-RIRISAL 111

Query:    78 ESE-FEAFAKKREHILDDDSVETALAFDLLSGLLDSELRE---LENFITTLEADFVKAHE 133
             E+E  E   K+    L++    +   +     LL   L +   LE  + +LE    K  E
Sbjct:   112 EAEKLEELQKQSASELEEKLKISDERYSKTDALLSQALSQNSVLEQKLKSLEELSEKVSE 171

Query:   134 LISSYT---ELGK-ASIEMEE---KLLDSEDSLQQSRDQILEIKKQ-SAKFQRTLSALDR 185
             L S+     E GK +SI+M+E   K+   E SL QS  +  E+++      Q+     D 
Sbjct:   172 LKSALIVAEEEGKKSSIQMQEYQEKVSKLESSLNQSSARNSELEEDLRIALQKGAEHEDI 231

Query:   186 EGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQV 245
              GN +S K +  L   Q L + +++KL+ AE++   L+ LE    +   LE  L+ + + 
Sbjct:   232 -GN-VSTKRSVEL---QGLFQTSQLKLEKAEEK---LKDLEAIQVKNSSLEATLSVAMEK 283

Query:   246 EEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGS 305
             E  L   L +  ++L  +EE        + EA   +  L+ + K    ++Q  + + +  
Sbjct:   284 ERDLSENLNAVMEKLKSSEERLEKQAREIDEATTRSIELEALHKHSELKVQKTMEDFSSR 343

Query:   306 VQREAGLRSKLDSLVKQVEVKESVIA-SLRENLSEAQARADGAEVRCKSLAETNIELN-- 362
                   L  K   L +++ V E  +A +  ++LS  Q   D +    + LA+TN +L   
Sbjct:   344 DTEAKSLTEKSKDLEEKIRVYEGKLAEACGQSLS-LQEELDQSSAENELLADTNNQLKIK 402

Query:   363 -EDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEAS---LE--KQNMLYST-VKDMEN 415
              ++L+G    SEK  ++E+ L + D + +  +   ++    +E  K+ +L ++ V D   
Sbjct:   403 IQELEGY-LDSEKETAIEK-LNQKDTEAKDLITKLKSHENVIEEHKRQVLEASGVADTRK 460

Query:   416 L-IQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKL 474
             + +++  LK++  +S  +  E++   L+E N  L ++++      +  +A L   E  K 
Sbjct:   461 VEVEEALLKLNTLESTIEELEKENGDLAEVNIKLNQKLANQGSETDDFQAKLSVLEAEKY 520

Query:   475 ATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKKDPSIVRHDST 534
               AK++ I    I +L  Q+  ERERLR QISSL  E K  V ++ Q+ K+  +V+  + 
Sbjct:   521 QQAKELQI---TIEDLTKQLTSERERLRSQISSLE-EEKNQVNEIYQSTKN-ELVKLQAQ 575

Query:   535 TASFERES----KEVTELSAAVSEEDKRQKNVSAGETEVASVDLKSEVGTLRRIDAGLLT 590
                 + +S     ++ +LSA V+E     K+V   + E   + LK EV  +  + + L  
Sbjct:   576 LQVDKSKSDDMVSQIEKLSALVAE-----KSVLESKFEQVEIHLKEEVEKVAELTSKLQE 630

Query:   591 SKH 593
              KH
Sbjct:   631 HKH 633

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NDQ5 CCDC88A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 129/557 (23%), Positives = 253/557 (45%)

Query:    57 IACSSEKL--VNLNILTMHVATRESEFEAFA--KKREHILDDD-SVETALAFDLLSGL-L 110
             + C S+KL  V    L +     E E E     KK E +++++ ++E A    +   L L
Sbjct:   369 LQCRSDKLHVVEKENLQLKAKLHEMEMERDMDRKKIEELMEENMALEMAQKQSMDESLHL 428

Query:   111 DSELRELENFITTLEADF----VKAHELISS-YTELGKAS---IEMEEKLLDS-EDSLQQ 161
               EL ++  F    E       ++  EL SS   +L K +   ++  E+L  + +DS+  
Sbjct:   429 GWELEQINRFTDHSEVSHKSLGLEVTELTSSRLLKLEKENQSLLKTVEELRSTMDDSVGG 488

Query:   162 SRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHF 221
             +  +I++++K++ +  + +  L++E   + +K   SL+D+Q L+++    ++  EQ    
Sbjct:   489 NSSRIVKMEKENQRLNKKIEELEKE--IVQEKQ--SLQDNQNLSKDL---MKEKEQLEKK 541

Query:   222 LRMLEKSLAREMDL-EKKLTESRQVEEALKFRLG-SFEQELLYTEEEAMDACERLFEAEN 279
                L ++L R++ L E++   S Q   +L+ R   S E ++   E+E     E + E  +
Sbjct:   542 FETLRENLERQIKLLEQENERSNQTIASLRQRSQISAEAQMKEIEKENKILHESIKETSS 601

Query:   280 SAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSE 339
                 L+   K++   ++    +     +R   L ++L  L K+ E+ +  IA    NLS 
Sbjct:   602 KLNKLEFEIKQVRKEME----HYKEKAERAEELENELHHLEKENELLQKKIA----NLSI 653

Query:   340 AQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLER---QLRESDIQLQHAVAYA 396
                + +  E     L   N +L + L   +  S ++ESLE+   QL E +++L+  +  +
Sbjct:   654 TCEKIEALEKENSDLDIENRKLKKTLDSLKNLSFQLESLEKENSQLDEENLELRRRIESS 713

Query:   397 EASLEKQNMLYSTVKDMENLIQDLK--LKVSKAD-SRADSAEEKLIILSEANAGLTEEIS 453
             + +  K   L    K++E+  + LK  L++ KA   +++  E     L   N  L + + 
Sbjct:   714 KCTSIKMAQLQLENKELESEKEQLKKSLELMKASFKKSERLEVSYQGLDTENQRLQKALE 773

Query:   454 FLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENK 513
                 +++ LE  L   E       K++     + +  + Q+  E + L Q+ S L  + K
Sbjct:   774 NSNKKIQQLEGELQDLESENQTLQKNLE-ELVISSKRLEQLEKENKLLEQETSQLEKDKK 832

Query:   514 VMVVK----LQQTK-KDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKNVSAGETE 568
              +  +     QQ + KD ++  ++      E+E+K + +  A   E   R K +     E
Sbjct:   833 QLEKENKRLRQQAEIKDSTLEENNVKINHLEKENKSLFKQIAVYKESCVRLKELEMENKE 892

Query:   569 V---ASVDLKSEVGTLR 582
             +   AS+D K+ V TLR
Sbjct:   893 LVKRASIDKKTLV-TLR 908

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006275 "regulation of DNA replication" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0010975 "regulation of neuron projection development" evidence=IEA

GO:0016044 "cellular membrane organization" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031929 "TOR signaling cascade" evidence=IEA

GO:0032148 "activation of protein kinase B activity" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0042127 "regulation of cell proliferation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043422 "protein kinase B binding" evidence=IEA

TAIR|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 129/597 (21%), Positives = 252/597 (42%)

Query:     4 DADQETSASVVVNVGDSESESNKVYSLEGISANGDVIEELRSA--GEVFSQLELHIACSS 61
             +A Q TS+ V V  GD +       S++ +  NG+V +E +    GE F ++E     + 
Sbjct:     3 EATQVTSSEVPVVKGDVDDLKTADISVKAV--NGEVPKEEKEEEDGE-FIKVEKEAFDAK 59

Query:    62 EKLVNLNILTMHVATRESEFEAFAKKRE-HILDDDSVETALAFDLLSGLLDSELRELENF 120
             +     + + +       E  +   +RE H   + + E  L  + ++G    EL+  E+ 
Sbjct:    60 DDAEKADHVPVEEQKEVIERSSSGSQRELHESQEKAKELELELERVAG----ELKRYESE 115

Query:   121 ITTLEADFVKAHELISSYTELGKASIEM-----EEKLLDSED----SLQQSRDQILEIKK 171
              T L+ + + A E +   TE     +E+     +EK+++ E+     L+   D +     
Sbjct:   116 NTHLKDELLSAKEKLEE-TEKKHGDLEVVQKKQQEKIVEGEERHSSQLKSLEDALQSHDA 174

Query:   172 QSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAR 231
             +  +      A D  G  +       +E    L E  K   ++AE+ + F   L K  A 
Sbjct:   175 KDKELTEVKEAFDALGIELESSRKKLIE----LEEGLK---RSAEEAQKF-EELHKQSAS 226

Query:   232 EMDLE-KKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKE 290
               D E +K  E  ++ ++ K      E+++   ++E  +  E++ E E     LK  + E
Sbjct:   227 HADSESQKALEFSELLKSTKESAKEMEEKMASLQQEIKELNEKMSENEKVEAALKSSAGE 286

Query:   291 LLG---RLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQ---ARA 344
             L      L +    +  + Q+ +   + +D L +++E K++  +  +E LS  Q   A+ 
Sbjct:   287 LAAVQEELALSKSRLLETEQKVSSTEALIDELTQELEQKKASESRFKEELSVLQDLDAQT 346

Query:   345 DGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQN 404
              G + +       N +L E+LK         +  E +LR ++ +L   +   EA      
Sbjct:   347 KGLQAKLSEQEGINSKLAEELKEKELLESLSKDQEEKLRTANEKLAEVLKEKEALEANVA 406

Query:   405 MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEA 464
              + S V  +  +  +L+ K+  +D      +    +LS+A +  +E    L  +L+ LE 
Sbjct:   407 EVTSNVATVTEVCNELEEKLKTSDENFSKTDA---LLSQALSNNSE----LEQKLKSLE- 458

Query:   465 SLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKK 524
              LH    +  A A    +  + +     Q A   E  + QI  L  +      K  + ++
Sbjct:   459 ELHSEAGSAAAAATQKNLELEDVVRSSSQAA---EEAKSQIKELETKFTAAEQKNAELEQ 515

Query:   525 DPSIVRHDSTTASFERESKEVTELSAA------VSEEDKRQKNVSAGETEVASVDLK 575
               ++++  S+ A  ERE KE++E S+       V+EE+K+Q      E +  + +L+
Sbjct:   516 QLNLLQLKSSDA--ERELKELSEKSSELQTAIEVAEEEKKQATTQMQEYKQKASELE 570

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 5.5e-14, P = 5.5e-14
 Identities = 135/608 (22%), Positives = 255/608 (41%)

Query:     7 QETSASVVVNVGDSESESNKVYSLEGISANGDVIE-ELRSAGEVFSQLELHIACSSEKLV 65
             Q T   +V   G  + ES+ V   +  S   D+ E   R +    S+LE  +  S +++ 
Sbjct:   571 QNTIQELVSESGQLK-ESHSVKDRDLFSLR-DIHETHQRESSTRVSELEAQLESSEQRIS 628

Query:    66 NLNILTMHVATRESEFEAFAKKREHILDD-DSVETALA--FDLLSGLLDSELRELENFIT 122
             +L   T+ +   E E +A + K   I+D  +  +  +    D L  L D   +E E+ ++
Sbjct:   629 DL---TVDLKDAEEENKAISSKNLEIMDKLEQAQNTIKELMDELGELKDRH-KEKESELS 684

Query:   123 TL--EADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180
             +L   AD   A ++  S     +    + +++LD  + +Q+++  I E   +S + + + 
Sbjct:   685 SLVKSADQQVA-DMKQSLDNAEEEKKMLSQRILDISNEIQEAQKTIQEHMSESEQLKESH 743

Query:   181 SALDREGNWISD-KDTGSLEDDQFLNE-NAKIKL--QTAEQQRHFLRMLE---KSLARE- 232
                +RE   + D  +T   E    L+E   ++KL  Q        L   E   KSL+   
Sbjct:   744 GVKERELTGLRDIHETHQRESSTRLSELETQLKLLEQRVVDLSASLNAAEEEKKSLSSMI 803

Query:   233 MDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEA---ENSAEV--LKGI 287
             +++  +L +++   + L   L   +  L   E E     E + EA   ++S++V  L+  
Sbjct:   804 LEITDELKQAQSKVQELVTELAESKDTLTQKENELSSFVE-VHEAHKRDSSSQVKELEAR 862

Query:   288 SKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLR---ENLSEAQARA 344
              +    +++ +  N+N S + +  L  ++  +  +++  ES I  L    E L  + A  
Sbjct:   863 VESAEEQVKELNQNLNSSEEEKKILSQQISEMSIKIKRAESTIQELSSESERLKGSHAEK 922

Query:   345 DGAEVRCKSLAETNI-ELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQ 403
             D      + + ET+  EL+  L+G  A   ++ES E ++ E    L+ A   +     K 
Sbjct:   923 DNELFSLRDIHETHQRELSTQLRGLEA---QLESSEHRVLELSESLKAAEEESRTMSTKI 979

Query:   404 NMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLE 463
             +     ++  + ++Q+L    SK   +    E KL +L+E ++    +I  L   +  LE
Sbjct:   980 SETSDELERTQIMVQELTADSSKLKEQLAEKESKLFLLTEKDSKSQVQIKELEATVATLE 1039

Query:   464 ASLHQAEETKLATAKDIGIRTKVITNLVMQ---MAVERERLRQQISSLAMENKVMVVKLQ 520
               L       +    +I  +T V+  L  Q   M      L + +     E   +  KL+
Sbjct:  1040 LELESVRARIIDLETEIASKTTVVEQLEAQNREMVARISELEKTMEERGTELSALTQKLE 1099

Query:   521 QTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQKNVSAGETEVASVDLKSEVGT 580
                K  S    ++ TA  +    E+  +S    EE ++Q    + E  V    L  EV  
Sbjct:  1100 DNDKQSSS-SIETLTAEIDGLRAELDSMSVQ-KEEVEKQMVCKSEEASVKIKRLDDEVNG 1157

Query:   581 LRRIDAGL 588
             LR+  A L
Sbjct:  1158 LRQQVASL 1165

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

UNIPROTKB|F8W6D3 NIN "Ninein" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 145/580 (25%), Positives = 266/580 (45%)

Query:    31 EGISANGDVIEELRSA--GEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKR 88
             EGI  + ++++ L  +  G + +  EL +A  +E LV  N  ++H A   S    F  + 
Sbjct:   317 EGIENSQEILKALDFSLDGNI-NLTELTLALENELLVTKN--SIHQAALAS----FKAEI 369

Query:    89 EHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEM 148
              H+L+    +     + L   LD +  +L++ + +   D   A E  + Y  L K   E 
Sbjct:   370 RHLLERVD-QVVREKEKLRSDLD-KAEKLKSLMASEVDDHHAAIERRNEYN-LRKLDEEY 426

Query:   149 EEKLLDSEDSLQQSRDQILE-IKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLN-- 205
             +E++   ++ L++ R+QIL+   KQ  + ++ +     E N+I D+   SL+++  L   
Sbjct:   427 KERIAALKNELRKEREQILQQAGKQRLELEQEIEKAKTEENYIRDRLALSLKENSRLENE 486

Query:   206 --ENAKIKLQTAEQQRHFL-RMLEKSLAREM-DLEKKLTESRQVEEALKFRLGSFEQELL 261
               ENA+ KL   E   + L R LE  LA +  DL+    E    EE L      +E++  
Sbjct:   487 LLENAE-KLAEYENLTNKLQRNLENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCR 545

Query:   262 YTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSK-LDSLV 320
               +++  +    L E      VL+   K      + V  N +G ++ E GL S+  + L 
Sbjct:   546 VLQDQVDELQSELEEYRAQGRVLRLPLKN--SPSEEVEAN-SGGIEPEHGLGSEECNPLN 602

Query:   321 KQVEVKESVIASLRENLSE--AQARADGAE-VRC--KSLAETNIELNEDLKGSRATSE-K 374
               +E  E VI  ++E         R +  + VR   K L ET +   +  +  +   E +
Sbjct:   603 MSIEA-ELVIEQMKEQHHRDICCLRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENE 661

Query:   375 VESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSA 434
               +LE+Q+  SD++ + A    +A++ K+    +T +  E   Q   L+V K +      
Sbjct:   662 THTLEKQI--SDLKNEIAELQGQAAVLKEAHHEATCRHEEEKKQ---LQV-KLEEEKTHL 715

Query:   435 EEKLIILSEAN--AGLTE-EISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLV 491
             +EKL +  E    A LT+ + SF R+R E L++S    E+ +  T +      + +T+LV
Sbjct:   716 QEKLRLQHEMELKARLTQAQASFERER-EGLQSSAWTEEKVRGLTQELEQFHQEQLTSLV 774

Query:   492 MQMAVERERLRQQISSL----AMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTE 547
              +  +E+E LR+++         E +    KLQQ   + SI+R++ TT + E +S    +
Sbjct:   775 EKHTLEKEELRKELLEKHQRELQEGRYESEKLQQ---ENSILRNEITTLN-EEDSISNLK 830

Query:   548 LSAAVSEEDKRQKNVSAGETEVASV-----DLKSEVGTLR 582
             L      +++  +     + E A+V     +LK ++  L+
Sbjct:   831 LGTLNGSQEEMWQKTETVKQENAAVQKMVENLKKQISELK 870

GO:0005509 "calcium ion binding" evidence=IEA

ASPGD|ASPL0000038802 pcpA [Emericella nidulans (taxid:162425)]

 Score = 215 (80.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 128/553 (23%), Positives = 257/553 (46%)

Query:    61 SEKLVNL--NILTMHVATRESE--FEAFAKKREHILDDDSVETALAFDLLSGLLDSELRE 116
             SE++  L  +I  +  + RE +   E   ++ E + D DS E     D LS L ++ELR 
Sbjct:   313 SEEIDKLRDDIEDLEASLREKDRTIEEREEEIEELKDRDSQEK----DSLSEL-ETELRR 367

Query:   117 LENFITTLEADFVKAH-ELISSYTELGKASIEMEEKLLDSEDSLQQSRDQI----LEIKK 171
              +  +  L+    +A  + I + T   +A +E +E+   +E +LQ+  D++    +  K 
Sbjct:   368 AKEQLEELQDSLDQAKSDAIEARTSERQA-LEEKER---AEQNLQELHDEMSNKSISTKG 423

Query:   172 QSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEK--SL 229
              + + +  +  L +  + + ++     +    L E  +   +T + +R   R+LE+   +
Sbjct:   424 LTRQLEEEVKELRQRNSTLKEELESKTQQMNDLEERLQNSRETTDSERE--RLLEELTQV 481

Query:   230 AREMDLEKKLTESR--QVEEAL-KFRLGSFEQELLYTEEEAM-DACERLFEAENSAEVLK 285
              RE ++ ++  +    Q++EA  + +  + E+ LL+T   A+ D    L   +N     +
Sbjct:   482 RREREVARQERDDLNVQLQEAHDELQRKTDEKALLHTRHHALTDESSNL---QNELAKAQ 538

Query:   286 GISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARAD 345
                +EL   L  V  N   + +    LRS+    ++ +E  +  I SL   + + + +  
Sbjct:   539 SNIRELQESLDTVKQN---AAENAENLRSQY---MEDIERLQEEIESLHHEIEDKEGQFA 592

Query:   346 GAEVRCKSLAETNIELNED-----LKGSRATSEKVESLERQLRESDIQLQHAVAYAEAS- 399
               + R +SL   N+++ +D       G + T EK+E +E  L   + +LQ  +   +A  
Sbjct:   593 LEQDRWESLRR-NLQVQKDRAEDQAAGFKRTIEKLEQVEHTLTGKESKLQEVIDSEKARH 651

Query:   400 LEKQNMLYSTVKDMENLIQDLKLKVSKADS-RAD--SAEEKLIILSEANAGLTEEISFLR 456
                + +L   VK++ +   DL  K    D  R +  S +E+L +   A A L E++  L 
Sbjct:   652 FNAEAVLSRQVKELND---DLSAKRDAIDELRHELLSVKEELRLARRAEATLKEKVQSLE 708

Query:   457 DRLECLEASLHQAEE-TKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAME-NKV 514
             D +  L++SL + +E TK  T K   +  +   + V ++  ++++LR Q+++  +E + +
Sbjct:   709 DEVVVLQSSLEEEQEYTKAHTRKG-PVEQE---SQVQKLLADKQKLRDQLANAHVELHDL 764

Query:   515 MVVKLQ-QTKKDP-----SIVRHDSTTASFERESKEVTELSAAVSEEDKRQKN--VSAGE 566
               VK + + ++D        V++  +   F++E  E+ + S  +  E KR K   +S  E
Sbjct:   765 KTVKAEIEAERDELQAQLEQVQNQVSDTRFDKEKTELRKASLRMETELKRLKEDKMSLLE 824

Query:   567 T-EVASVDLKSEV 578
             T E     L SE+
Sbjct:   825 TKESLENQLNSEI 837

GO:0005634 "nucleus" evidence=IDA

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0040023 "establishment of nucleus localization" evidence=IMP

GO:0051417 "microtubule nucleation by spindle pole body" evidence=IMP

GO:0000070 "mitotic sister chromatid segregation" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0044732 "mitotic spindle pole body" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-101124-2 myh11b "myosin, heavy polypeptide 11, smooth muscle b" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 127/572 (22%), Positives = 259/572 (45%)

Query:    30 LEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEFEAFAKKRE 89
             L+ I+   D + E R+  +   Q E  +   SE++       + + T++ E E    + E
Sbjct:   859 LKEITQKHDQVVEERNKLQAKLQEEAELYAESEEV------RIRLETKKQELEEVLHEME 912

Query:    90 HILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEME 149
               L+++  E + AF    G L  +L+ELEN +   +A   K  +L S   + GK   ++E
Sbjct:   913 ARLEEEE-ERSQAFQQEKGNLQQKLKELENHLAEQDATRQKL-QLESGAAD-GKIK-KLE 968

Query:   150 EKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLE-DDQFLNENA 208
             E +L  ED   + + +  +++++ A F   L A + E      K+   L+   + +  + 
Sbjct:   969 EDVLIMEDQKNKLQKEKQQLEERLADFSSNL-AEEEE----KSKNLTKLKAKHESMISDL 1023

Query:   209 KIKLQTAEQQRHFLRMLEKSLARE-MDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEA 267
             +++++  E+ R  +   ++ L  E  DL++++   + +   LK +    E E+    +E 
Sbjct:  1024 EVRMKKEEKSRQDVEKAKRKLETEHSDLQEQMKNLQTLIAELKTQQARSEMEI----QEL 1079

Query:   268 MDACERLFEAENSAEVLKGISKE--LLGRLQIVLFNMNGSVQREAGLRSKLDSLVK--QV 323
               + E   E+   +  LK I +   LL  LQ  L    G+ ++    R +L+  +   + 
Sbjct:  1080 QASVEA--ESTQKSNALKKIHEMEGLLSELQDELEAEQGAGRKSEKARKELEEELSALRT 1137

Query:   324 EVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNE----DLKGSRATSEKVESLE 379
             E+++S+  +  +   E +A+ +      K L E     +E    +LK   A  + V+ L 
Sbjct:  1138 ELEDSLDTTAVQQ--ELRAKREQEVAMLKKLIEDEGRSHEAQVHELKQKHA--QAVDELS 1193

Query:   380 RQLRESDIQLQHAVAYAEASLEKQ-NMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKL 438
             +QL +S  + +  +  A+ +LEK+   L   ++ + N  QDL+ K  K +++    + + 
Sbjct:  1194 QQLDQSK-RAKATLEKAKQALEKEVGDLNGNLRSLGNAKQDLEQKKKKVETQLADLQTRF 1252

Query:   439 IILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVE- 497
                      L + +S L      + + L++AE   +  +KD+      + +    +A E 
Sbjct:  1253 NESERKREELGDAVSKLNTEYNNVNSILNEAESKNIKLSKDVVSLNSQLQDAQELLAEET 1312

Query:   498 RERLR--QQISSLAMENKVMVVKL-QQTKKDPSIVRH-DSTTASFERESKEVTELSA--A 551
             R++L    ++  +  E   ++ ++ ++T+   ++ RH  S         K + E S+   
Sbjct:  1313 RQKLNFSTRLRQMEDERNGLLEQIDEETEARRNVERHVSSLNTQLSEAKKRLDEYSSNFQ 1372

Query:   552 VSEEDKR--QKNVSA--GETE--VASVDLKSE 577
             + EE K+  Q+++ A  GE E   AS D KSE
Sbjct:  1373 MLEESKKRLQRDLEATKGELEEKTASYD-KSE 1403

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040801-25 tmf1 "TATA element modulatory factor 1" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 136/580 (23%), Positives = 256/580 (44%)

Query:    22 SESNKVYSLEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLNILTMHVATRESEF 81
             S  N   +LE I    + I EL   GE  S+ +L  +       N+ I  + V  RES+ 
Sbjct:   572 SRLNSNETLELIKEKEEQIRELLEEGEKLSKQQLQHS-------NI-IKKLRVKERESDA 623

Query:    82 EAFAKKREHILDDDSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTEL 141
             +  AK+ + + + +  E  L   ++ G  + E +  EN I  L A  V+  E     ++L
Sbjct:   624 Q-IAKQTKKLKEQEE-ELKLLQQVMDGKEEIEKQHREN-IKKLNA-VVERQE--KELSKL 677

Query:   142 GKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLS--ALDREGNWISDKDTGSLE 199
               +S E++EK    + +L  S  ++ E+ K +A         AL RE   +  K+  SL 
Sbjct:   678 QTSSEELQEKSRSLQAALDSSYKELAELHKANASKDSEAQELALSRE---VQAKEELSLA 734

Query:   200 DDQFLNENAKIKLQTAEQQ----RHFLRMLEKSLAREMD-LEKKLTESRQ-VEEALKFRL 253
              ++ + E+++++ +    Q    R  L+  E+  A++ D L ++++E +Q ++EA + R 
Sbjct:   735 LEK-VQEDSRLQQEALANQVADLRVALQRAEQQQAKKEDYLREEISELQQRIQEA-ETRN 792

Query:   254 GSFEQELLYTEEEAMDACERLFEAENSAEVL--KGISKELLGRLQIVLFNMNGSVQREAG 311
                 Q +       +   E L +A   A+    + + K L  RL      +  SV++E  
Sbjct:   793 QELSQSVTSATRPLLRQIENL-QATLGAQTASWEKLEKNLSDRLADAQAQLAVSVEKERS 851

Query:   312 LRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAET----NIELNEDLKG 367
                +L ++  Q+   ES  + LR+     Q + D   +R + L +      +EL E+LKG
Sbjct:   852 ATEELLAIRAQITSFESQASLLRQEKGRLQGQLDAERMRREKLEDDLSRERVEL-ENLKG 910

Query:   368 SRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA 427
               A   +    E+ L  + ++++      E   +K  +    +K+ E   + L L V+ A
Sbjct:   911 EYARVSEDSKKEKLLLTNQLEMEKMKV--EQEKKKCYLAQEALKEKER--KSLSLSVTDA 966

Query:   428 DSRADSAEEKLIILSEAN-AGLTEEISFLRDRLECLEASLH----QAEETKLATAKDIGI 482
              + +  +  +   +S A+ AGL    SF   + + L+ S +        T L  A  +G 
Sbjct:   967 PASSTPSLSRSSSVSGADHAGLPS--SFFSQQEDSLDHSFNTMTMSISGTNLYEAARLGG 1024

Query:   483 RTKVITNLVMQMAVERERLRQ-QISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERE 541
              + VI +L  Q+     +LR+ +I+ L ME  +  ++  +T     +VR  +     E +
Sbjct:  1025 GSSVIESLQSQL-----KLREGEITQLQME--IASLERSRTVMSEELVRLTNENDEMESK 1077

Query:   542 SKEVTELSAAVSEEDKRQKNV------SAGETEVASVDLK 575
              KE+  L   + + ++R   +       A E E   +DL+
Sbjct:  1078 VKEIPRLKVQLKDLEQRHNTILQMYGEKAEEAEELRLDLE 1117

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7E5	WIT1_ARATH	No assigned EC number	0.4050	0.9805	0.8605	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038112001 SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (642 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	617
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 82/399 (20%), Positives = 159/399 (39%), Gaps = 31/399 (7%)

Query: 95   DSVETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASI-------- 146
            D ++ AL        L  +LR     +T L+ D V+   +I+  +    +SI        
Sbjct: 629  DDLDNALE-------LAKKLRPGYRIVT-LDGDLVRPGGVITGGSAKTNSSILERRREIE 680

Query: 147  EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNE 206
            E+EEK+ + E+ + +    + E++K+  + +  L  L +E   +S + +   +D   L  
Sbjct: 681  ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 207  NAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEE 266
              +   Q  E+     + L +  A   +LE++L E+ +     +  +   E ++   +EE
Sbjct: 741  EVE---QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797

Query: 267  AMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVK 326
                 E L E      +L   +  L  RL+ +   +  + +R   L  +++ L + +E  
Sbjct: 798  LKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857

Query: 327  ESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESD 386
             + I  L E + E ++  +       SL E    L  +L+       ++ES   +LR   
Sbjct: 858  AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917

Query: 387  IQLQHAVAYAEASLEKQNMLYSTVKD------------MENLIQDLKLKVSKADSRADSA 434
             +L+  +A  E  LE   +    +++             E L   ++    +A  R    
Sbjct: 918  EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977

Query: 435  EEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETK 473
            E K+  L   N    EE   L++R + L A      E K
Sbjct: 978  ENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 69/313 (22%), Positives = 126/313 (40%), Gaps = 28/313 (8%)

Query: 110 LDSELRELENFITTLEADFVKAH--ELISSYTELGKASIEMEEKLLDSEDSLQQSRDQIL 167
           L +ELRELE  +  L  + ++    EL     E  +   E+  +L + E+ L++ R ++ 
Sbjct: 218 LKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS 277

Query: 168 EIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEK 227
           E++++  + Q+ L AL  E   IS  +       + L    +   +   Q       L++
Sbjct: 278 ELEEEIEELQKELYALANE---ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334

Query: 228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGI 287
                 +LE+KL E ++  E+L+  L   E EL    E  ++  E   E   S      +
Sbjct: 335 LAEELAELEEKLEELKEELESLEAELEELEAEL-EELESRLEELEEQLETLRSKVAQLEL 393

Query: 288 SKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGA 347
               L          N  ++R   L ++L+ L  + E  +  I  L + L EA+ +   A
Sbjct: 394 QIASL----------NNEIER---LEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440

Query: 348 EVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLY 407
           E     L E   EL E  +      E +E L  +L E++  L  A         + + L 
Sbjct: 441 E-----LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL- 494

Query: 408 STVKDMENLIQDL 420
              + ++  ++  
Sbjct: 495 ---ERLQENLEGF 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 81/388 (20%), Positives = 161/388 (41%), Gaps = 25/388 (6%)

Query: 121  ITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTL 180
            I TL+ D V+    I+  +   ++S+  + +L + E+ L +   Q+ +++++    +  L
Sbjct: 638  IVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNEL 697

Query: 181  SALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQ-RHFLRMLEKSLAREMDLEKKL 239
             +L+             LE+ +   E  + +L+  +++       LE+  +R  +LE++L
Sbjct: 698  RSLEDL-----------LEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL 746

Query: 240  TESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENS----AEVLKGISKELL--- 292
             E  +  E L+ RL   E+EL   EE      E + E E       E L+ + +EL    
Sbjct: 747  EELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAE 806

Query: 293  GRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCK 352
             RL  +   +    QR   L  +++ L +++E  E  +  L E L E +   +  +   +
Sbjct: 807  RRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELE 866

Query: 353  SLAETNIELNEDLKGSRATSEKVE----SLERQLRESDIQLQHAVAYAEASLEKQNMLYS 408
             L     EL ++LK      E++E     LE +L E   +++      E    K   L  
Sbjct: 867  ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEV 926

Query: 409  TVKDMENLIQDLKLKV--SKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL 466
             + ++E  +++       ++ +   +  EE++  L   N    EE   + +R E L++  
Sbjct: 927  ELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQR 986

Query: 467  HQAEETKLATAKDIGIRTKVITNLVMQM 494
               EE K    + I    K       + 
Sbjct: 987  EDLEEAKEKLLEVIEELDKEKRERFKET 1014

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 73/327 (22%), Positives = 146/327 (44%), Gaps = 21/327 (6%)

Query: 146 IEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLN 205
            E E KL  +E++L++  D + E++KQ  K +R     +R     ++             
Sbjct: 175 EEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAEL------------ 222

Query: 206 ENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTE-SRQVEEALKFRLGSFEQELLYTE 264
                      + +   + LE+       LE++L E   ++EEA K  +   + EL    
Sbjct: 223 -RELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEK-EIEELKSELEELR 280

Query: 265 EEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE 324
           EE  +  E L E +   E L+G    L  RL+ +   +    +R   L+ K+++L +++E
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340

Query: 325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRE 384
            +E+++  L + L+E +   +  E +  +L E   EL E L+      E++  LE +L E
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR------EELAELEAELAE 394

Query: 385 SDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEA 444
              +L+      E+  E+   L   ++D++  +++L+ ++ +  +  +   E+L  L E 
Sbjct: 395 IRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQ 454

Query: 445 NAGLTEEISFLRDRLECLEASLHQAEE 471
              L + +  L   L  L+  L + E+
Sbjct: 455 LEELRDRLKELERELAELQEELQRLEK 481

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 68/331 (20%), Positives = 133/331 (40%), Gaps = 29/331 (8%)

Query: 234 DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLG 293
           + E+KL  + +  E L+  L   E++L   E +A  A       E  AE+ +     LL 
Sbjct: 176 EAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQ---ELKAELRELELALLLA 232

Query: 294 RLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKS 353
           +L+ +   +    +  + L  +L+ L +++E  E  I  L+  L E +   +  +     
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 354 LAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDM 413
           L E   EL  ++            L  +L E + +L+      E   EK   L   +++ 
Sbjct: 293 LKEEIEELEGEI----------SLLRERLEELENELEELEERLEELKEKIEALKEELEER 342

Query: 414 ENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETK 473
           E L+++L+  +++ +   +  EEKL  L E    L E    LR+ L  LEA L +     
Sbjct: 343 ETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEA---LREELAELEAELAEIRNEL 399

Query: 474 LATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQQTKKDPSIVRH-- 531
               ++I             +    ERL +++  L  E K +  +L++ + +   +    
Sbjct: 400 EELKREIE-----------SLEERLERLSERLEDLKEELKELEAELEELQTELEELNEEL 448

Query: 532 DSTTASFERESKEVTELSAAVSEEDKRQKNV 562
           +      E     + EL   ++E  +  + +
Sbjct: 449 EELEEQLEELRDRLKELERELAELQEELQRL 479

Length = 1163

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 92/475 (19%), Positives = 175/475 (36%), Gaps = 57/475 (12%)

Query: 110 LDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLL--DSEDSLQQSRDQIL 167
           L+  L+ LE      E +  +A E         K  ++ E   L  + ED L+++++ I 
Sbjct: 112 LEVRLKALEELEKKAENEAAEAEEEAKLL----KDKLDAESLKLQNEKEDQLKEAKESIS 167

Query: 168 EIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEK 227
            IK   ++ Q      D E   +  +    LE+ +   E  + +L  AE++   L   + 
Sbjct: 168 RIKNDLSEMQCRAQNADTELKLLESE----LEELREQLEECQKELAEAEKKLQSLTSEQA 223

Query: 228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTE--EEAMDACERLFEAENSAEVLK 285
           S A      K L E  +  E     + S +++LL     E  + A         S +   
Sbjct: 224 SSADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDN 283

Query: 286 GISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQA--- 342
            + KE L  LQ  L       ++ A L  + + L  +++  +S++  +  NL        
Sbjct: 284 ELLKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSR 343

Query: 343 --------------RADGAEVRCKSLAETNIELNEDL-----------KGSRATSEKVES 377
                         +        K L  T  +L  +            K   A    V  
Sbjct: 344 RIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKALVRR 403

Query: 378 LERQL------RESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRA 431
           L+R+L      R+    + ++             L   +++ E+L+Q ++  ++K +++ 
Sbjct: 404 LQRRLTLVTKERDGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLAKMENQL 463

Query: 432 DSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLV 491
              EE +    + N  L  EI  L+++L   E  L   +E          +R K+ T   
Sbjct: 464 SELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLSFVKE------ATNALRLKIET--- 514

Query: 492 MQMAVERERLRQQISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVT 546
             +  ER+RLRQ+ S L M+ + + ++         ++      AS   +  + T
Sbjct: 515 --LERERDRLRQEKSLLEMKLEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQT 567

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 50/243 (20%), Positives = 104/243 (42%), Gaps = 5/243 (2%)

Query: 230 AREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISK 289
           A    L ++L   ++   +L+  L   E  L    +E  DA  ++ E E   E L+   +
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733

Query: 290 ELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEV 349
           +L  RL+ +  +++   Q    ++S+L  L  ++E  E  +  L E L++ +AR   + +
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793

Query: 350 RCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYST 409
                 E   EL++  +       ++  +E++L    ++ ++     +   E++  L   
Sbjct: 794 P-----EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848

Query: 410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQA 469
           +K +E  I++L  K  + +   +  E  L  L      L +E   L  +L  LE  + + 
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908

Query: 470 EET 472
           E  
Sbjct: 909 EAQ 911

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 56/315 (17%), Positives = 127/315 (40%), Gaps = 31/315 (9%)

Query: 206 ENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEE 265
           E A  +L+  E+    L ++     ++++  ++  E  +  +AL      +E   L  E+
Sbjct: 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEK 232

Query: 266 EAMDACERLFEAENSA--EVLKGISKEL------LGRLQIVLFNMNGSVQREAG-----L 312
           EA++  +   E + ++  E L+ +++E+      L  ++ +L  +N  ++         +
Sbjct: 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV 292

Query: 313 RSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDL----KGS 368
           + K+  L  ++   E  IA     L +A+ R    E     L     EL  ++    K  
Sbjct: 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352

Query: 369 RATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD 428
              +E+   L+ +L +   +L+        + ++               +D + K+ K  
Sbjct: 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL--------------KDYREKLEKLK 398

Query: 429 SRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVIT 488
              +  + +L  L E    L+EE++ L   +  +EA +++ EE K   A +I  +   + 
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458

Query: 489 NLVMQMAVERERLRQ 503
            L   ++   + L  
Sbjct: 459 QLAADLSKYEQELYD 473

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 27/287 (9%)

Query: 110 LDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLD--------SEDSLQQ 161
           L+ +   +E  + +LE +  K  E IS   EL K   E+E+ L +         E+   +
Sbjct: 235 LERQKEAIERQLASLEEELEKLTEEIS---ELEKRLEEIEQLLEELNKKIKDLGEEEQLR 291

Query: 162 SRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQ---TAEQQ 218
            +++I E++ + A  +R+++  +RE           LED +     AK++ +      + 
Sbjct: 292 VKEKIGELEAEIASLERSIAEKERE-----------LEDAE--ERLAKLEAEIDKLLAEI 338

Query: 219 RHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAE 278
               R +E+   R   L ++  E ++  E L+  L   ++E   T +E  D  E+L + +
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

Query: 279 NSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLS 338
                LK     L   LQ +   +       AG+ +K++ L ++ E K   I      L 
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458

Query: 339 EAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRES 385
           +  A     E     L E    + ++L   +    + E+  R   E 
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 47/244 (19%), Positives = 95/244 (38%), Gaps = 15/244 (6%)

Query: 147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKD---TGSLEDDQF 203
           E+ E+L + ++ L + +++I E++ + +  +  L  L+ E   + ++       +E  + 
Sbjct: 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 204 LNENAKIKLQTAEQQRHFLRMLEKSLAREM-----DLEKKLTESRQVEEALKFRLGSFEQ 258
             E  +  L+  EQ    L   ++ L  ++     +LE+     R+    L+  L     
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397

Query: 259 ELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDS 318
           EL   + E       +   E   E L    ++L   L+ +   +         L  +L+ 
Sbjct: 398 ELEELKRE-------IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEE 450

Query: 319 LVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESL 378
           L +Q+E     +  L   L+E Q      E    SL      L  + + S+     +E+L
Sbjct: 451 LEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEAL 510

Query: 379 ERQL 382
           E  L
Sbjct: 511 ESGL 514

Length = 1163

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 306 VQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDL 365
           +      R +L  L +++   +  +A L+E L+E Q      +    +L      L ++L
Sbjct: 58  LSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKEL 117

Query: 366 KGSRATSEKVESLE---RQLRESDIQLQHAVAYAEASLE 401
              +  S     L+   R+LRE   +L+      EA  E
Sbjct: 118 ARIKQLSANAIELDEENRELREELAELKQENEALEAENE 156

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	617
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	99.17
PRK02224	880	chromosome segregation protein; Provisional	98.84
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.81
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.77
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.74
PRK02224	880	chromosome segregation protein; Provisional	98.74
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.61
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.6
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.53
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.48
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.44
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.27
PHA02562	562	46 endonuclease subunit; Provisional	98.24
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.22
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.2
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.0
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.89
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.85
PRK04863	1486	mukB cell division protein MukB; Provisional	97.85
PRK01156	895	chromosome segregation protein; Provisional	97.85
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.79
PRK03918	880	chromosome segregation protein; Provisional	97.79
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.78
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.75
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.71
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.71
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.71
PRK03918	880	chromosome segregation protein; Provisional	97.68
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.59
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.51
PF00038	312	Filament: Intermediate filament protein; InterPro:	97.48
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.41
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.34
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.33
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.29
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.25
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.25
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.16
COG5185	622	HEC1 Protein involved in chromosome segregation, i	97.12
PRK01156	895	chromosome segregation protein; Provisional	97.1
PRK04863	1486	mukB cell division protein MukB; Provisional	97.07
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.06
PRK11637	428	AmiB activator; Provisional	97.02
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.02
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.99
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	96.96
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.77
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.73
PRK04778	569	septation ring formation regulator EzrA; Provision	96.66
PHA02562	562	46 endonuclease subunit; Provisional	96.66
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.65
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.62
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.58
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.55
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.54
PRK11637	428	AmiB activator; Provisional	96.35
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.22
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.15
PRK04778	569	septation ring formation regulator EzrA; Provision	96.07
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	96.04
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.01
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.94
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	95.6
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.53
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.45
PF14662	193	CCDC155: Coiled-coil region of CCDC155	95.41
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.37
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	95.21
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.19
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	95.18
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.15
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	95.1
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.0
KOG0971	1243	consensus Microtubule-associated protein dynactin	94.93
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.63
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.57
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.37
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	94.35
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	94.29
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	94.26
PF13514	1111	AAA_27: AAA domain	94.21
PLN02939	977	transferase, transferring glycosyl groups	94.21
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.05
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.79
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	93.66
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	93.61
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	93.58
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.58
PRK09039	343	hypothetical protein; Validated	93.3
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	93.23
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	92.99
PRK09039	343	hypothetical protein; Validated	92.73
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	92.73
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	92.69
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	92.61
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	92.56
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	92.54
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	92.49
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	92.46
PRK10698	222	phage shock protein PspA; Provisional	91.64
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.36
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	91.33
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	91.14
PRK11281	1113	hypothetical protein; Provisional	91.07
KOG4673	961	consensus Transcription factor TMF, TATA element m	90.86
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	90.85
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	90.83
PLN02939	977	transferase, transferring glycosyl groups	90.81
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	90.58
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	90.36
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	90.19
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.02
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	89.62
PRK10884	206	SH3 domain-containing protein; Provisional	89.53
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	89.36
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	89.3
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	89.09
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.08
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	88.79
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.64
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	88.61
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	88.06
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	87.83
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	87.73
PRK10929	1109	putative mechanosensitive channel protein; Provisi	87.62
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	87.54
KOG0018	1141	consensus Structural maintenance of chromosome pro	87.38
KOG0249	916	consensus LAR-interacting protein and related prot	87.25
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	87.22
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	87.04
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	86.77
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.59
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	86.58
KOG0963	629	consensus Transcription factor/CCAAT displacement	86.57
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	86.38
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	86.35
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	85.8
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.97
PF15294	278	Leu_zip: Leucine zipper	84.22
COG4477	570	EzrA Negative regulator of septation ring formatio	84.18
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	83.68
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.35
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	83.04
PRK10884	206	SH3 domain-containing protein; Provisional	82.99
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	82.9
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	82.88
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	82.75
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	82.56
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	82.4
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	82.13
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	81.08
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	80.79
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	80.71
PF10186	302	Atg14: UV radiation resistance protein and autopha	80.68
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	80.66
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	80.32
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	80.3
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	80.01

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=99.17  E-value=2.1e-08  Score=98.75  Aligned_cols=225  Identities=20%  Similarity=0.212  Sum_probs=155.9

Q ss_pred             HHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHH
Q 007114          237 KKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKL  316 (617)
Q Consensus       237 kkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKL  316 (617)
                      ..+-++......+..+|...+......|..+.++..|+---|       ..+.-+-.||+.++..|.....+=.+....+
T Consensus         8 ~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE-------~~le~~eerL~~~~~kL~~~e~~~de~er~~   80 (237)
T PF00261_consen    8 DELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLE-------EELERAEERLEEATEKLEEAEKRADESERAR   80 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444455555555444443322       2333333344444444444444444444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhH
Q 007114          317 DSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYA  396 (617)
Q Consensus       317 kslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASa  396 (617)
                      +.+|......+.-+..|..++..|..++..++.++...   .-.|..--+.|....+|+..+|.++++.+.++..+....
T Consensus        81 k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~---~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l  157 (237)
T PF00261_consen   81 KVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEV---ERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL  157 (237)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence            55555555667777777777778888887777776643   333333334445577788888999998888888888888


Q ss_pred             HHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114          397 EASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE  471 (617)
Q Consensus       397 ea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~  471 (617)
                      ..........+.....+|.-|..|..++..||.||+.||.+|..|-..+-.|..+|...+.+..++...|.+..+
T Consensus       158 k~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~  232 (237)
T PF00261_consen  158 KSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN  232 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777788899999999999999999999999999999999999999999999999999999999987654

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK02224 chromosome segregation protein; Provisional

Probab=98.84  E-value=0.00022  Score=80.84  Aligned_cols=86  Identities=21%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             hHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHH-------HHHHH
Q 007114          257 EQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE-------VKESV  329 (617)
Q Consensus       257 eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~-------~len~  329 (617)
                      +.....+.+.+..+...+-+++..++-+......+...++.++..|..+...=.++.++|+.+++++.       .+++.
T Consensus       355 e~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~  434 (880)
T PRK02224        355 EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT  434 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444443322211233344444443333       55555


Q ss_pred             HHHHHHHHHHHHh
Q 007114          330 IASLRENLSEAQA  342 (617)
Q Consensus       330 ~e~LKe~i~~AEs  342 (617)
                      +..++..+..++.
T Consensus       435 ~~~~~~~l~~~~~  447 (880)
T PRK02224        435 LRTARERVEEAEA  447 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            5566666666553

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.81  E-value=0.00014  Score=83.11  Aligned_cols=116  Identities=15%  Similarity=0.136  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhc-chHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH
Q 007114          239 LTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAE-NSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD  317 (617)
Q Consensus       239 L~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk  317 (617)
                      +...+...+++...+...+.+...+++....+-..+.+.. +..+-+.+....+..+++..+..+.....+=..+..+++
T Consensus       246 l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  325 (1164)
T TIGR02169       246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA  325 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333443344444444444444433333322 233334444444444444444444333333333444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114          318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL  354 (617)
Q Consensus       318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L  354 (617)
                      .+++++..+...++.++..+...+......+.++..+
T Consensus       326 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~  362 (1164)
T TIGR02169       326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL  362 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.77  E-value=0.00027  Score=80.21  Aligned_cols=41  Identities=20%  Similarity=0.196  Sum_probs=17.6

Q ss_pred             HHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHH
Q 007114          450 EEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNL  490 (617)
Q Consensus       450 eEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dL  490 (617)
                      .++..|+.++..|...+.+....++...+....-..-..||
T Consensus       965 ~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL 1005 (1179)
T TIGR02168       965 DDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFL 1005 (1179)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            34444555555555544444433433333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.74  E-value=0.00015  Score=82.77  Aligned_cols=54  Identities=15%  Similarity=0.151  Sum_probs=27.7

Q ss_pred             ccHHHHHHHHHHH---HHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q 007114          213 QTAEQQRHFLRML---EKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEE  266 (617)
Q Consensus       213 qt~eQqR~iLrML---EkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~  266 (617)
                      ..+..+|.+|..+   .....+-.+...+|.....+..+|+..+.........++..
T Consensus       150 ~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~  206 (1164)
T TIGR02169       150 MSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRE  206 (1164)
T ss_pred             CCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677788887654   22223333444455555555555555555544444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.74  E-value=0.00092  Score=75.98  Aligned_cols=154  Identities=22%  Similarity=0.265  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 007114          311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADG------AEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRE  384 (617)
Q Consensus       311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~------aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkE  384 (617)
                      ++..+++.++.++.+++..+++++..+..+++....      ...+...+.+.   ++.....+....++...|.+++.+
T Consensus       472 ~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~---~~~~~e~le~~~~~~~~l~~e~~~  548 (880)
T PRK02224        472 EDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEEL---IAERRETIEEKRERAEELRERAAE  548 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHH
Confidence            355666666667777777777776666654444222      11111112221   222222233333333444444443


Q ss_pred             hHHHHHH--------------HHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114          385 SDIQLQH--------------AVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       385 se~QL~~--------------A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne  450 (617)
                      ....+..              +.........+.+.+.+.+..++. +.++...+...+++.+..+.+...|-+.+-++.+
T Consensus       549 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~  627 (880)
T PRK02224        549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELNDERRE  627 (880)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322              222334445566666777777773 7777778888888888888888888888889999


Q ss_pred             HHHhhHhHHHHHHHHHHH
Q 007114          451 EISFLRDRLECLEASLHQ  468 (617)
Q Consensus       451 EL~fLksr~~~LE~~L~q  468 (617)
                      +|.-+|.++..|+..+..
T Consensus       628 ~l~~~r~~i~~l~~~~~~  645 (880)
T PRK02224        628 RLAEKRERKRELEAEFDE  645 (880)
T ss_pred             HHHHHHHHHHHHHHHhCH
Confidence            999999999988876653

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.61  E-value=0.00056  Score=77.67  Aligned_cols=14  Identities=21%  Similarity=0.128  Sum_probs=6.3

Q ss_pred             HHHHHHHHHHHHHH
Q 007114          458 RLECLEASLHQAEE  471 (617)
Q Consensus       458 r~~~LE~~L~qa~~  471 (617)
                      ++..|+.++..+..
T Consensus       966 ~~~~l~~~i~~lg~  979 (1179)
T TIGR02168       966 DEEEARRRLKRLEN  979 (1179)
T ss_pred             CHHHHHHHHHHHHH
Confidence            44444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=98.60  E-value=0.0033  Score=75.63  Aligned_cols=403  Identities=14%  Similarity=0.168  Sum_probs=187.6

Q ss_pred             hhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhh-------
Q 007114          110 LDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSA-------  182 (617)
Q Consensus       110 lDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~-------  182 (617)
                      +..++.+++.-+.++..++......+.+|..-  .+  -..-..++++-|.+.++.+...+...+.|+-+...       
T Consensus       596 ~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~--i~--~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~  671 (1311)
T TIGR00606       596 LNKELASLEQNKNHINNELESKEEQLSSYEDK--LF--DVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ  671 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh--cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666666666666666655541  11  01134556667777777777777665555444333       


Q ss_pred             h--hccCCCCCCCCCCCccccccc----chhhh------------hhhccHHHHHHHHHHHHHHhhhhhhhH-HHhHHHH
Q 007114          183 L--DREGNWISDKDTGSLEDDQFL----NENAK------------IKLQTAEQQRHFLRMLEKSLAREMDLE-KKLTESR  243 (617)
Q Consensus       183 ~--~~~~~~~~~~~~~~~ed~~~~----~~~~~------------~~mqt~eQqR~iLrMLEkSlA~e~dLE-kkL~es~  243 (617)
                      .  +.+..|+--.- ++..++...    ++...            ......+...+.|+.|...++.-.++. +.+.+.+
T Consensus       672 a~~~~~~~C~LC~R-~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~  750 (1311)
T TIGR00606       672 LTDENQSCCPVCQR-VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELR  750 (1311)
T ss_pred             HhhccCCcCCCCCC-CCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHH
Confidence            2  22223332222 222222211    11111            112223344566666665556555553 5555555


Q ss_pred             HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcch------HHHHhhhHHHHHHhHHHHhhhcccchh--chhhHHHH
Q 007114          244 QVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENS------AEVLKGISKELLGRLQIVLFNMNGSVQ--REAGLRSK  315 (617)
Q Consensus       244 ~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa------~EvL~g~skel~gkLq~~qf~L~as~~--REsel~sK  315 (617)
                      ....++...+.....+...++......-...=.++.+      +.-+......+..++......+.+++.  .=.+|...
T Consensus       751 ~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~e  830 (1311)
T TIGR00606       751 NKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQE  830 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHH
Confidence            5555555554444443333333322222222222222      222356667777777777777766554  12456666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------------------------hHhhhhhHHhhHHHhhhhhhhhhh
Q 007114          316 LDSLVKQVEVKESVIASLRENLSEAQARADGA------------------------EVRCKSLAETNIELNEDLKGSRAT  371 (617)
Q Consensus       316 LkslEeqL~~len~~e~LKe~i~~AEsra~~a------------------------eskc~~LteTN~eL~~el~~Lk~l  371 (617)
                      +..++.+++.+.+.++++.......+......                        +.++..|.+-+.++..++..++. 
T Consensus       831 i~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~-  909 (1311)
T TIGR00606       831 KQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE-  909 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            66666666644333333333333333333333                        33333333333333333333222 


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhH----HHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh-hhhhhHHHHHhhHHHhhh
Q 007114          372 SEKVESLERQLRESDIQLQHAVAYA----EASLEKQNMLYSTVKDMENLIQDLKLKVSKAD-SRADSAEEKLIILSEANA  446 (617)
Q Consensus       372 sEKv~sLEkQLkEse~QL~~A~ASa----ea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE-SRAe~AE~kc~~LtEtN~  446 (617)
                        ++..|...+.....++...+...    ...+.+.+.+...+..+..+..+++.-+..-- ...+..+.++..+..+=-
T Consensus       910 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie  987 (1311)
T TIGR00606       910 --QDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLE  987 (1311)
T ss_pred             --HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence              22222222222222222222222    22223334444444444444444443322211 113334445554544456


Q ss_pred             hhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhh---------hHHHHHHHHH--------HHHHHHHHHHhhhhhh
Q 007114          447 GLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIR---------TKVITNLVMQ--------MAVERERLRQQISSLA  509 (617)
Q Consensus       447 eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~---------tK~i~dLv~Q--------La~ErErL~~Qissl~  509 (617)
                      ++..++..+..++..+.+.+......|......|..+         ..-|..|..+        +..|+.+|..++..+.
T Consensus       988 ~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~ 1067 (1311)
T TIGR00606       988 ECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIK 1067 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            6666777777777777777776666666665555555         2334444433        3356677777777777


Q ss_pred             hhhHHHHHHhh
Q 007114          510 MENKVMVVKLQ  520 (617)
Q Consensus       510 ~eNk~L~~k~k  520 (617)
                      ..+..+...++
T Consensus      1068 ~~~a~l~g~~k 1078 (1311)
T TIGR00606      1068 RNHVLALGRQK 1078 (1311)
T ss_pred             HHHHHHHHHHH
Confidence            66666555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.53  E-value=0.00062  Score=84.36  Aligned_cols=248  Identities=22%  Similarity=0.260  Sum_probs=185.7

Q ss_pred             HhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114          261 LYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEA  340 (617)
Q Consensus       261 ~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~A  340 (617)
                      ++||.-...+-..+-.|.-+..=+.-..+-++.-+..+|.++..+.....++++.+..+|..+..+++.+++|+.++..+
T Consensus      1607 Kkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~ 1686 (1930)
T KOG0161|consen 1607 KKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEAL 1686 (1930)
T ss_pred             hhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555556667777778888888888899999999999999999999999999999999


Q ss_pred             HhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHH-------HHhHHHHHHHHH-----
Q 007114          341 QARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHA-------VAYAEASLEKQN-----  404 (617)
Q Consensus       341 Esra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A-------~ASaea~~eeqn-----  404 (617)
                      +.---++|.++..+++-+..+......+-+    +-.++..|+..|.+....+..+       .+.+.-+.++++     
T Consensus      1687 ~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~ 1766 (1930)
T KOG0161|consen 1687 ERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQET 1766 (1930)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            888889999988888877777766555544    5556666666665554443332       222333333333     


Q ss_pred             --hHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhh
Q 007114          405 --MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGI  482 (617)
Q Consensus       405 --~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~  482 (617)
                        .+++.-..||.-+.||+.++..||+.|-.-             -..-++-|+.|+.+||.+|......+..+.|-..-
T Consensus      1767 ~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~-------------~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk 1833 (1930)
T KOG0161|consen 1767 SQKLERLKKSLERQVKDLQLRLDEAEQAALKG-------------GKKQIAKLEARIRELESELEGEQRRKAEAIKGLRK 1833 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------------cHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHH
Confidence              345556778888899999888888644321             12347889999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHH---HHHHHhhhhhhhhhHHHHHHhhh
Q 007114          483 RTKVITNLVMQMAVER---ERLRQQISSLAMENKVMVVKLQQ  521 (617)
Q Consensus       483 ~tK~i~dLv~QLa~Er---ErL~~Qissl~~eNk~L~~k~k~  521 (617)
                      .-+.|++|-+|...++   +|++.++.-+..+++.+-..+-.
T Consensus      1834 ~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQlee 1875 (1930)
T KOG0161|consen 1834 KERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEE 1875 (1930)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999987   68899999999988887666553

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.48  E-value=0.0026  Score=75.69  Aligned_cols=47  Identities=26%  Similarity=0.300  Sum_probs=22.5

Q ss_pred             hhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHh
Q 007114          427 ADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETK  473 (617)
Q Consensus       427 AESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K  473 (617)
                      .+.+....+.++..|-..|+.--+|..-++.|...|..++..+..+|
T Consensus       947 ~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~  993 (1163)
T COG1196         947 LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK  993 (1163)
T ss_pred             HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555554444444444444444444444444333

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.44  E-value=0.0022  Score=76.29  Aligned_cols=198  Identities=21%  Similarity=0.271  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHH
Q 007114          314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQL  389 (617)
Q Consensus       314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL  389 (617)
                      .++..++.++...+..+..+...+..-+.+.+....+...+.+-..++..+++.|+.    +..++..+..++.+.....
T Consensus       793 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~  872 (1163)
T COG1196         793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEK  872 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444555555555555555555555555555555555555554    4556666666666666666


Q ss_pred             HHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHH---------hhHhHHH
Q 007114          390 QHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEIS---------FLRDRLE  460 (617)
Q Consensus       390 ~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~---------fLksr~~  460 (617)
                      ......-...+.+.+.+...|..+++-+..++..+.+++.|+...+.+|..+......+..++.         .++.++.
T Consensus       873 ~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  952 (1163)
T COG1196         873 EELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIE  952 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHH
Confidence            6666666677777777888888888888888888888888888888888776655444444443         3555666


Q ss_pred             HHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007114          461 CLEASLHQAEETKLATAKDIGIR---TKVITNLVMQMAVERERLRQQISSLAME  511 (617)
Q Consensus       461 ~LE~~L~qa~~~K~stakdI~~~---tK~i~dLv~QLa~ErErL~~Qissl~~e  511 (617)
                      .|+..+..+-..-.....+..-.   -..+..-...|...+.+|+..|..+-++
T Consensus       953 ~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~ 1006 (1163)
T COG1196         953 RLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006 (1163)
T ss_pred             HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766443322223333333333   3333334444556677777777666443

>TIGR00606 rad50 rad50

Probab=98.27  E-value=0.021  Score=68.92  Aligned_cols=62  Identities=15%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             HHHHHHHHhhhhhhhccccccchhhHH---H-HHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 007114          121 ITTLEADFVKAHELISSYTELGKASIE---M-EEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSA  182 (617)
Q Consensus       121 ~~tlq~~I~~~~~~i~s~~~~g~~f~~---~-~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~  182 (617)
                      +..+...+.+.....-....+...+..   . ...+-..+..+.+..+.+.+++.+...+...+..
T Consensus       711 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~  776 (1311)
T TIGR00606       711 LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT  776 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444322222   2 2445566666666666666666666666666643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.24  E-value=0.003  Score=67.99  Aligned_cols=101  Identities=16%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114          371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne  450 (617)
                      +.+....|+.|++..+..+....    ....+.+.+...+..+++.|...+..+.....+....+.+...|...+.++++
T Consensus       304 l~d~i~~l~~~l~~l~~~i~~~~----~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~  379 (562)
T PHA02562        304 IKDKLKELQHSLEKLDTAIDELE----EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE  379 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence            34444444444444444333222    34445666788899999999999999988888888999999999999999999


Q ss_pred             HHHhhHhHHHHHHHHHHHHHHHhhh
Q 007114          451 EISFLRDRLECLEASLHQAEETKLA  475 (617)
Q Consensus       451 EL~fLksr~~~LE~~L~qa~~~K~s  475 (617)
                      +|..+..++..+....++....+..
T Consensus       380 ~l~~l~~~l~~~~~~~~~~~ke~~~  404 (562)
T PHA02562        380 ELAKLQDELDKIVKTKSELVKEKYH  404 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888887777766655543

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.22  E-value=0.00078  Score=66.88  Aligned_cols=212  Identities=24%  Similarity=0.270  Sum_probs=122.2

Q ss_pred             hHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhh----hhh
Q 007114          294 RLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLK----GSR  369 (617)
Q Consensus       294 kLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~----~Lk  369 (617)
                      |++.++.++-.+..|...+..+|+..++.+...+..+.+|...|...|.....++.++...+..=-+.....+    .++
T Consensus         2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k   81 (237)
T PF00261_consen    2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK   81 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788888888888888899999988888888777777777777776555555555555444333333333333    333


Q ss_pred             hhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhH
Q 007114          370 ATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLT  449 (617)
Q Consensus       370 ~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLn  449 (617)
                      .+..+....+..+...+.|+..|...++.....+......+.-+|.       .+.+||.|++.+|.+|..|-+      
T Consensus        82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~-------~Le~aEeR~e~~E~ki~eLE~------  148 (237)
T PF00261_consen   82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQ-------ELERAEERAEAAESKIKELEE------  148 (237)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhchhHHHHHH------
Confidence            3555666666666666777777777666666555555555544444       445556666666666655443      


Q ss_pred             HHHHhhHhHHHHHHHHHHHHHHHhhhh----------hHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 007114          450 EEISFLRDRLECLEASLHQAEETKLAT----------AKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKL  519 (617)
Q Consensus       450 eEL~fLksr~~~LE~~L~qa~~~K~st----------akdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~  519 (617)
                       +|..+...+.+||.+-.++.+.-...          .++.-.|......-|.+|-.+..+|...|...-.++.-+-..+
T Consensus       149 -el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el  227 (237)
T PF00261_consen  149 -ELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL  227 (237)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33333333333333333222222111          2222344455555566666666666666666655555444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.20  E-value=0.035  Score=69.71  Aligned_cols=279  Identities=21%  Similarity=0.211  Sum_probs=153.7

Q ss_pred             HhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchh
Q 007114          228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQ  307 (617)
Q Consensus       228 SlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~  307 (617)
                      +.+.--.||+++.-....-.+.+.+..-..++....+..+.......+--.|+.+.+......+...-..++..+.-+..
T Consensus      1426 ~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~ 1505 (1930)
T KOG0161|consen 1426 SRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEE 1505 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444456666666666666666666666666666666666666666666777777766666666666666666666666


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-----------------
Q 007114          308 REAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-----------------  370 (617)
Q Consensus       308 REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-----------------  370 (617)
                      +..++--.+.++|+-++.++..+.+|..++.+||...+..+++...+.-.+-++..++..--.                 
T Consensus      1506 ~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i 1585 (1930)
T KOG0161|consen 1506 QKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQL 1585 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            677777777777777778888888888888887777777777665544444444433222111                 


Q ss_pred             -------------hhHHHH---HHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHH-------HHHHhhhhh
Q 007114          371 -------------TSEKVE---SLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQ-------DLKLKVSKA  427 (617)
Q Consensus       371 -------------lsEKv~---sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIE-------eLK~KvskA  427 (617)
                                   -++-+.   -+|.++.+.++++.+|.......+.++..+...++++-.-.+       ++++.+..|
T Consensus      1586 ~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~a 1665 (1930)
T KOG0161|consen 1586 ESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEA 1665 (1930)
T ss_pred             HHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         111111   477888888888888877666555554444444444433333       333444444


Q ss_pred             hhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhh---HHHHHHHHHHHHHHHHHHHh
Q 007114          428 DSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRT---KVITNLVMQMAVERERLRQQ  504 (617)
Q Consensus       428 ESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~t---K~i~dLv~QLa~ErErL~~Q  504 (617)
                      |-|+..+++              |+..|+..+.++++-=++++.+-...+..|....   -.....-.+|-.+.-.|+..
T Consensus      1666 err~~~l~~--------------E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~e 1731 (1930)
T KOG0161|consen 1666 ERRLAALQA--------------ELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSE 1731 (1930)
T ss_pred             HHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence            444444444              4444444444444444444443333333333321   22222233333344444444


Q ss_pred             hhhhhhhhHHHHHHhh
Q 007114          505 ISSLAMENKVMVVKLQ  520 (617)
Q Consensus       505 issl~~eNk~L~~k~k  520 (617)
                      +-..+.++....++.+
T Consensus      1732 lee~~~~~~~~~Er~k 1747 (1930)
T KOG0161|consen 1732 LEEEQSELRAAEERAK 1747 (1930)
T ss_pred             HHHHHHHHHhhHHHHH
Confidence            4444444444444444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.00  E-value=0.029  Score=63.05  Aligned_cols=38  Identities=21%  Similarity=0.269  Sum_probs=19.2

Q ss_pred             hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHH
Q 007114          234 DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDAC  271 (617)
Q Consensus       234 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~  271 (617)
                      -|++.....+...+.|+..|.+..++...|.....++.
T Consensus       161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~  198 (546)
T PF07888_consen  161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELT  198 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555554444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.89  E-value=0.053  Score=63.15  Aligned_cols=165  Identities=22%  Similarity=0.256  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114          318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE  397 (617)
Q Consensus       318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae  397 (617)
                      .+|+-+.+.+.+++.|.+.-.+++....   .+...+          =+.++.+..++.+|+..|-+-.++|..++.-+.
T Consensus       437 ~lEea~~eker~~e~l~e~r~~~e~e~~---Eele~~----------~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s  503 (775)
T PF10174_consen  437 TLEEALREKERLQERLEEQRERAEKERQ---EELETY----------QKELKELKAKLESLQKELSEKELQLEDAKEEAS  503 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence            4555666666666666655444331110   011111          122333566777888888888888777665555


Q ss_pred             HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHH------HHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114          398 ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAE------EKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE  471 (617)
Q Consensus       398 a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE------~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~  471 (617)
                      ..---+.--.|.|..++.-++-.++++.+.++..+.+.      .++..|-..+....++.+..+..|+.|=.-|+.++.
T Consensus       504 ~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~  583 (775)
T PF10174_consen  504 KLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAEN  583 (775)
T ss_pred             HHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445688899999999999999999998887722      123334444444445555555678888889999999


Q ss_pred             HhhhhhHhhhhhhHHHHHHHHHHH
Q 007114          472 TKLATAKDIGIRTKVITNLVMQMA  495 (617)
Q Consensus       472 ~K~stakdI~~~tK~i~dLv~QLa  495 (617)
                      +|.+.-+.||--.+-+++.-++++
T Consensus       584 EK~~ke~ki~~LekeLek~~~~~~  607 (775)
T PF10174_consen  584 EKNDKEKKIGELEKELEKAQMHLA  607 (775)
T ss_pred             HHHhHHHHHHHHHHHHHHhccchh
Confidence            999998888877776555444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.85  E-value=0.17  Score=63.45  Aligned_cols=334  Identities=20%  Similarity=0.257  Sum_probs=193.3

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHH
Q 007114          147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLE  226 (617)
Q Consensus       147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLE  226 (617)
                      .++.++.++...-+-++-.++++|.+......--+-+    .|--+      ..++.-+.-.+.+-.+.+|+|.....|+
T Consensus        63 ~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l----~~~~~------~~~~~~~~l~~~~se~~~qkr~l~~~le  132 (1822)
T KOG4674|consen   63 RLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNL----SWEID------ALKLENSQLRRAKSELQEQKRQLMELLE  132 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555566666666555333322221    11100      1111112234455556677887777766


Q ss_pred             H---------------------HhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHH-------HHHHHHHHHHHhh-
Q 007114          227 K---------------------SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTE-------EEAMDACERLFEA-  277 (617)
Q Consensus       227 k---------------------SlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lE-------E~~~~~~er~~EA-  277 (617)
                      .                     +..--+++|.++.+.....--++.|+...+||+.-|+       .....++++++.- 
T Consensus       133 ~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~  212 (1822)
T KOG4674|consen  133 RQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLR  212 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4                     3344567777777766666666677777777665544       4444555555532 


Q ss_pred             ---cchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH--------------------------------HHHHH
Q 007114          278 ---ENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD--------------------------------SLVKQ  322 (617)
Q Consensus       278 ---ENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk--------------------------------slEeq  322 (617)
                         .+-.+=|...+..+..-+...+...++..++=.+|-.++.                                -.+.+
T Consensus       213 re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks~  292 (1822)
T KOG4674|consen  213 REHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKSK  292 (1822)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2334444555555555555555555555555555555444                                12222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHH--------
Q 007114          323 VEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAV--------  393 (617)
Q Consensus       323 L~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~--------  393 (617)
                      +.++..-..+|-+.|...+..+..+..+|...++-=.++..-+..+.+ +..|+..||..|+...--+.++.        
T Consensus       293 ~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s~~  372 (1822)
T KOG4674|consen  293 LEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVSEK  372 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhhhH
Confidence            226666677777888888888888888888887665555555444444 55678888888877665544411        


Q ss_pred             ---Hh---------------HHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhh
Q 007114          394 ---AY---------------AEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFL  455 (617)
Q Consensus       394 ---AS---------------aea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fL  455 (617)
                         ++               -...+.++.+++-++.++.+.+...++.|.--..-...+-....-.++++.++++||.+.
T Consensus       373 ~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~  452 (1822)
T KOG4674|consen  373 AALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFS  452 (1822)
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11               011234455666666666666666665555555555556667777888899999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHH
Q 007114          456 RDRLECLEASLHQAEETKLATAKDIGIRTKVITNL  490 (617)
Q Consensus       456 ksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dL  490 (617)
                      ..+..++|+-++.+.----.-..++-.....|.||
T Consensus       453 ~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdl  487 (1822)
T KOG4674|consen  453 NQKIQKLEKELESLKKQLNDLERENKLLEQQISDL  487 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888888766544333333333333333333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.85  E-value=0.097  Score=64.71  Aligned_cols=247  Identities=18%  Similarity=0.136  Sum_probs=125.0

Q ss_pred             hhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHH------hhcchH
Q 007114          208 AKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLF------EAENSA  281 (617)
Q Consensus       208 ~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~------EAENa~  281 (617)
                      +--=|.+++++|.++-=.=+-=.+.-.-+++|.....+-.++...+...+.....|+..+...-...-      ......
T Consensus       271 aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei  350 (1486)
T PRK04863        271 AADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKI  350 (1486)
T ss_pred             HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33338899988887644322223444455555566666666666666666666666665555433222      223344


Q ss_pred             HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH
Q 007114          282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIEL  361 (617)
Q Consensus       282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL  361 (617)
                      ..+.+..+++..+++..+..+.....+=.++..++..+++++..+...+.++...+..++.++.........|..++.-+
T Consensus       351 ~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~  430 (1486)
T PRK04863        351 ERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC  430 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55566666777777777666655544445555555555555555555555555555555555555555555554444332


Q ss_pred             h------hhhhhhh-hhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhH
Q 007114          362 N------EDLKGSR-ATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSA  434 (617)
Q Consensus       362 ~------~el~~Lk-~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~A  434 (617)
                      .      +++.... ....++..++.++.+.+.++..+.+..+....+++.+++.           +.+|..... .+.|
T Consensus       431 ~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~-----------~Gkv~~~~a-~~~~  498 (1486)
T PRK04863        431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKI-----------AGEVSRSEA-WDVA  498 (1486)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCcCHHHH-HHHH
Confidence            1      1111111 1444555555555555555555555554444443333332           233332211 2223


Q ss_pred             HHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114          435 EEKLIILSEANAGLTEEISFLRDRLECLEASLH  467 (617)
Q Consensus       435 E~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~  467 (617)
                      -..|..+.+-. -+-+-+..++.++..||..|+
T Consensus       499 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~  530 (1486)
T PRK04863        499 RELLRRLREQR-HLAEQLQQLRMRLSELEQRLR  530 (1486)
T ss_pred             HHHHHHhHHHH-HHHHhhHHHHHHHHHHHHHHH
Confidence            33333333322 234455566666666666554

>PRK01156 chromosome segregation protein; Provisional

Probab=97.85  E-value=0.11  Score=59.99  Aligned_cols=33  Identities=15%  Similarity=0.271  Sum_probs=16.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114          151 KLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL  183 (617)
Q Consensus       151 KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~  183 (617)
                      ++.+...-+.+.+..+.+++.+...+...+..+
T Consensus       410 ~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el  442 (895)
T PRK01156        410 ELNEINVKLQDISSKVSSLNQRIRALRENLDEL  442 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445555555555555555555544443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.79  E-value=0.055  Score=54.70  Aligned_cols=109  Identities=22%  Similarity=0.306  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHH
Q 007114          329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYS  408 (617)
Q Consensus       329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S  408 (617)
                      -+.+++.......+.+..+..++..+...=-.|..+++.   +..+...||+++.+.+.+.......          +..
T Consensus       196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~---l~~~~~~Le~~l~~le~~~~~~~~~----------~~~  262 (312)
T PF00038_consen  196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELES---LRAKNASLERQLRELEQRLDEEREE----------YQA  262 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred             ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhc---cccchhhhhhhHHHHHHHHHHHHHH----------HHH
Confidence            344444444444444444444444443333333333333   3446678888888877766543332          334


Q ss_pred             hHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114          409 TVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD  457 (617)
Q Consensus       409 ~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks  457 (617)
                      .|..+|.-|.+++..+..--       .++..|-..++.|.-||+.||.
T Consensus       263 ~i~~le~el~~l~~~~~~~~-------~ey~~Ll~~K~~Ld~EIatYR~  304 (312)
T PF00038_consen  263 EIAELEEELAELREEMARQL-------REYQELLDVKLALDAEIATYRK  304 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccchhHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHH
Confidence            47777777777777666554       5899999999999999999996

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK03918 chromosome segregation protein; Provisional

Probab=97.79  E-value=0.13  Score=58.79  Aligned_cols=13  Identities=31%  Similarity=0.682  Sum_probs=7.2

Q ss_pred             hhhHHHhHHHHHH
Q 007114          110 LDSELRELENFIT  122 (617)
Q Consensus       110 lDSEv~Ele~~~~  122 (617)
                      ++..+..++..+.
T Consensus       174 ~~~~~~~l~~~l~  186 (880)
T PRK03918        174 IKRRIERLEKFIK  186 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555553

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.78  E-value=0.049  Score=60.29  Aligned_cols=129  Identities=22%  Similarity=0.192  Sum_probs=75.3

Q ss_pred             hhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhH
Q 007114          233 MDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGL  312 (617)
Q Consensus       233 ~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel  312 (617)
                      .+.-+.|..++.+.++|+.+|.....+...-.+.++..--|+=+.+.      |......+.   .+..|.....|=...
T Consensus        58 ~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~------~~~~~~~~~---~k~ele~~~~q~~~~  128 (522)
T PF05701_consen   58 AQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQ------GIAEEASVA---WKAELESAREQYASA  128 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhh------hhcccchHH---HHHHHHHHHHHHHHH
Confidence            45556777889999999999988887777766666665555544432      222222222   233333333444455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114          313 RSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA  370 (617)
Q Consensus       313 ~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~  370 (617)
                      ...|.+.-++|..+...+..+.+.-..|.++|..|....+.-.+.=-+|+.+|..|++
T Consensus       129 ~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke  186 (522)
T PF05701_consen  129 VAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKE  186 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666666666665555666666665555555444444445555555544

Several sequences in this family are described as being myosin heavy chain-like.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.75  E-value=0.17  Score=59.20  Aligned_cols=256  Identities=16%  Similarity=0.192  Sum_probs=143.8

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhh-hhccHHHHHHHHHHH
Q 007114          147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKI-KLQTAEQQRHFLRML  225 (617)
Q Consensus       147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~-~mqt~eQqR~iLrML  225 (617)
                      .+-..+.+++.-+..++..+..--++...|...++.-   ..              ..+.++.+ .+      ..++.|=
T Consensus       180 ~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~---~~--------------~~~~~a~t~al------q~~ie~K  236 (775)
T PF10174_consen  180 EALRRIREAEARIMRLESLLERKEKEHMEAREQLHRR---LQ--------------MERDDAETEAL------QTVIEEK  236 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hh--------------cCCCchhHHHH------HHHHHHH
Confidence            4555677777777777777666666665564444210   01              11112222 22      2456666


Q ss_pred             HHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccc
Q 007114          226 EKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGS  305 (617)
Q Consensus       226 EkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as  305 (617)
                      +-.|+   .||+.|.++..-..-|+-++.-.+.+..++....+..-.-..-.-|-.+-+.+.+..--.=|...+..|...
T Consensus       237 d~ki~---~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~  313 (775)
T PF10174_consen  237 DTKIA---SLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETL  313 (775)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66665   477777777777777777777777777776333332221111122224444444444333344555555555


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhh-------hhhhhh--------
Q 007114          306 VQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNED-------LKGSRA--------  370 (617)
Q Consensus       306 ~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~e-------l~~Lk~--------  370 (617)
                      ..--+|.+.-+.-+.++|...+.-++-|--++..-..|...+.+-|.+.+..+-.++.+       |..|++        
T Consensus       314 ~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~k  393 (775)
T PF10174_consen  314 EEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERK  393 (775)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666666666665555444444444444455555555555555555544444       444554        


Q ss_pred             ---hhHHHHHHHHHHHHhHHHHHHHHHhHHH------HHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114          371 ---TSEKVESLERQLRESDIQLQHAVAYAEA------SLEKQNMLYSTVKDMENLIQDLKLKVSKAD  428 (617)
Q Consensus       371 ---lsEKv~sLEkQLkEse~QL~~A~ASaea------~~eeqn~l~S~IsdMEnvIEeLK~KvskAE  428 (617)
                         +..|+..||.+|++-+.|+...+...-+      ...-+..+...+.+-+.+|+.|...-..++
T Consensus       394 i~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e  460 (775)
T PF10174_consen  394 INVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAE  460 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               7778889999999999888777665441      112234455666677777776665443333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.71  E-value=0.025  Score=63.47  Aligned_cols=136  Identities=18%  Similarity=0.231  Sum_probs=70.6

Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114          378 LERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD  457 (617)
Q Consensus       378 LEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks  457 (617)
                      ++.++.....||..+.....+++.+-..+..++++|-++=+-.-..+..|  |.+.|.-+ ..|.++.++|.+.=    +
T Consensus       281 ~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~a--RLe~aql~-~qLad~~l~lke~~----~  353 (546)
T PF07888_consen  281 LQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQA--RLEAAQLK-LQLADASLELKEGR----S  353 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHH-HHHHHHHHHHHHHH----H
Confidence            33333444444444444444544444555566666655544433333333  45555554 46667666654332    2


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhH-HHHHHhh
Q 007114          458 RLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENK-VMVVKLQ  520 (617)
Q Consensus       458 r~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk-~L~~k~k  520 (617)
                      +...--..|.+.-+..-.-+.++....--+.+-...=-.||++|+.||....+-|. .|.+..+
T Consensus       354 q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~r  417 (546)
T PF07888_consen  354 QWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRR  417 (546)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            11111112222112222234455555555666666667799999999988877775 3444444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.71  E-value=0.046  Score=64.39  Aligned_cols=195  Identities=24%  Similarity=0.286  Sum_probs=110.8

Q ss_pred             hhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchh--
Q 007114          233 MDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREA--  310 (617)
Q Consensus       233 ~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs--  310 (617)
                      -||..||.-.|..-.|=+.||-..+-.++.+|-.-+ .--|+.+                     -|.+|.--.+|+.  
T Consensus       234 rdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqE-fkSkim~---------------------qqa~Lqrel~raR~e  291 (1243)
T KOG0971|consen  234 RDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQE-FKSKIME---------------------QQADLQRELKRARKE  291 (1243)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence            478888888888888888888888887777765432 2222222                     2222211111111  


Q ss_pred             -----hHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH--------------HHHhhh-hhhhHhhh
Q 007114          311 -----GLRSKLD------------------SLVKQVEVKESVIASLRENLS--------------EAQARA-DGAEVRCK  352 (617)
Q Consensus       311 -----el~sKLk------------------slEeqL~~len~~e~LKe~i~--------------~AEsra-~~aeskc~  352 (617)
                           +.+++++                  -+||.-++|++.++.+|+.+.              +--+-+ ..+--+.+
T Consensus       292 ~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfk  371 (1243)
T KOG0971|consen  292 AKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFK  371 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHH
Confidence                 1111111                  233333344444444444443              222333 22344677


Q ss_pred             hhHHhhHHHhhhhhhhhhhh--HH------HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114          353 SLAETNIELNEDLKGSRATS--EK------VESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV  424 (617)
Q Consensus       353 ~LteTN~eL~~el~~Lk~ls--EK------v~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kv  424 (617)
                      +|+.-|..|++-|--|++++  +|      ++.||+.--|...    -..       .-+-|.-++..||..|.|||+.|
T Consensus       372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~e----L~r-------~kE~Lsr~~d~aEs~iadlkEQV  440 (1243)
T KOG0971|consen  372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEE----LRR-------QKERLSRELDQAESTIADLKEQV  440 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888887777777732  11      1122222111111    111       11224445777778888888877


Q ss_pred             hhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHH
Q 007114          425 SKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEA  464 (617)
Q Consensus       425 skAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~  464 (617)
                      .-|=    -||+=+++||+-|++|-+-+..|+.-+++||.
T Consensus       441 DAAl----GAE~MV~qLtdknlnlEekVklLeetv~dlEa  476 (1243)
T KOG0971|consen  441 DAAL----GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA  476 (1243)
T ss_pred             HHhh----cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH
Confidence            6653    58999999999999999999999997777764

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=0.046  Score=65.64  Aligned_cols=204  Identities=22%  Similarity=0.230  Sum_probs=126.3

Q ss_pred             hHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhh-------hhhHHh----hHHHh
Q 007114          294 RLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRC-------KSLAET----NIELN  362 (617)
Q Consensus       294 kLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc-------~~LteT----N~eL~  362 (617)
                      +.....--++-...+...++++|+.+-.+++.++..++..+..+++++.-.+.+....       .+|.+-    |-+|.
T Consensus       385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~  464 (1293)
T KOG0996|consen  385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD  464 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555667777777877777777777777777777776666555554443       333332    33333


Q ss_pred             hhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHH
Q 007114          363 EDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKL  438 (617)
Q Consensus       363 ~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc  438 (617)
                      +.++.|+.    .+++...+|+.|.-...|+..|.+..+-.+.++.++.+...+.-.=+++||.++..            
T Consensus       465 e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~------------  532 (1293)
T KOG0996|consen  465 EILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLA------------  532 (1293)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence            44444444    67777788888888888888777776666655555544444444444444444333            


Q ss_pred             hhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHH---HHhhhhhhhhhHHH
Q 007114          439 IILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERL---RQQISSLAMENKVM  515 (617)
Q Consensus       439 ~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL---~~Qissl~~eNk~L  515 (617)
                        ..+++.+.+-+|..++..+.+       ...+.....|++...++....|.+|+..=|+|+   .++.++-...|++|
T Consensus       533 --~~~~~~e~~~~l~~~k~~l~~-------~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl  603 (1293)
T KOG0996|consen  533 --SSESLKEKKTELDDLKEELPS-------LKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVL  603 (1293)
T ss_pred             --HHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence              344455555555444444444       444444556777778888888888888777665   67788999999999


Q ss_pred             HHH
Q 007114          516 VVK  518 (617)
Q Consensus       516 ~~k  518 (617)
                      ..=
T Consensus       604 ~al  606 (1293)
T KOG0996|consen  604 DAL  606 (1293)
T ss_pred             HHH
Confidence            543

>PRK03918 chromosome segregation protein; Provisional

Probab=97.68  E-value=0.18  Score=57.52  Aligned_cols=30  Identities=20%  Similarity=0.399  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 007114          155 SEDSLQQSRDQILEIKKQSAKFQRTLSALD  184 (617)
Q Consensus       155 ~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~  184 (617)
                      ....+...+..+.+++......+..+..+.
T Consensus       403 l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~  432 (880)
T PRK03918        403 IEEEISKITARIGELKKEIKELKKAIEELK  432 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555555554443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.59  E-value=0.011  Score=59.02  Aligned_cols=159  Identities=21%  Similarity=0.297  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---------------------
Q 007114          312 LRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA---------------------  370 (617)
Q Consensus       312 l~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~---------------------  370 (617)
                      |..++..++++|..-+.-...+.+++.+|+--+..++.-|+-|+--+.++.++++-+..                     
T Consensus         9 lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar   88 (205)
T KOG1003|consen    9 LNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR   88 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666555554443332                     


Q ss_pred             -----------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHh
Q 007114          371 -----------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLI  439 (617)
Q Consensus       371 -----------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~  439 (617)
                                 ..+++..-|.++++.+.++.+.....+..-..-..+.-..-..+..|..+-+|+-.||.||+.||..+.
T Consensus        89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVa  168 (205)
T KOG1003|consen   89 KLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVA  168 (205)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence                       334444444444444444444433333322222233344666788888999999999999999999999


Q ss_pred             hHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114          440 ILSEANAGLTEEISFLRDRLECLEASLHQAE  470 (617)
Q Consensus       440 ~LtEtN~eLneEL~fLksr~~~LE~~L~qa~  470 (617)
                      -|-.+=-.|-+.+...+.+..++..-|.++.
T Consensus       169 kLeke~DdlE~kl~~~k~ky~~~~~eLD~~~  199 (205)
T KOG1003|consen  169 KLEKERDDLEEKLEEAKEKYEEAKKELDETL  199 (205)
T ss_pred             HHcccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9988888888888888888888777777553

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.51  E-value=0.026  Score=56.56  Aligned_cols=182  Identities=21%  Similarity=0.228  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007114          325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQN  404 (617)
Q Consensus       325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn  404 (617)
                      .+-.-|.-|++....|+.|+..+-.+...++..|.+-..-+.-   +..+...+|....-.+.||..|+..++..--++.
T Consensus         8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv---~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e   84 (205)
T KOG1003|consen    8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKV---IENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE   84 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444567788889999999999999999999888776655533   3334444444444444444444444444332322


Q ss_pred             hHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHH-------HHHHHHHHHhhhhh
Q 007114          405 MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLE-------ASLHQAEETKLATA  477 (617)
Q Consensus       405 ~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE-------~~L~qa~~~K~sta  477 (617)
                      ..--.+.=       +-..+-.||-||+.+|.+|..|.+.=--+...|.+|.-.-..++       ..++.+-    .--
T Consensus        85 EVarkL~i-------iE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~lt----dKL  153 (205)
T KOG1003|consen   85 EVARKLVI-------IEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELT----DKL  153 (205)
T ss_pred             HHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHH
Confidence            22222221       12355678889999999999887765555555555554333222       2222221    134


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114          478 KDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ  520 (617)
Q Consensus       478 kdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k  520 (617)
                      |+-.++......=|+.|-.+|.+|...+.....++.-+..-+-
T Consensus       154 kEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD  196 (205)
T KOG1003|consen  154 KEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD  196 (205)
T ss_pred             hhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence            5566788888899999999999998888777777655544443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=97.48  E-value=0.15  Score=51.56  Aligned_cols=96  Identities=23%  Similarity=0.288  Sum_probs=47.3

Q ss_pred             HHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHH
Q 007114          418 QDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVE  497 (617)
Q Consensus       418 EeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~E  497 (617)
                      ++++..+......+..+-..++.+...=-.|..+|..|+++-..||..+..+++.-       +....-+..-+.++=.|
T Consensus       198 ~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~-------~~~~~~~~~~i~~le~e  270 (312)
T PF00038_consen  198 EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL-------DEEREEYQAEIAELEEE  270 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH-------HHHHHHHHHhhhccchh
Confidence            33333333333333333333333333334444455555555555555555444332       33334444555666666


Q ss_pred             HHHHHHhhhhhhhhhHHH-HHHhh
Q 007114          498 RERLRQQISSLAMENKVM-VVKLQ  520 (617)
Q Consensus       498 rErL~~Qissl~~eNk~L-~~k~k  520 (617)
                      ...+..+|.....+...| ..|+.
T Consensus       271 l~~l~~~~~~~~~ey~~Ll~~K~~  294 (312)
T PF00038_consen  271 LAELREEMARQLREYQELLDVKLA  294 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666777776666665554 66665

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.41  E-value=0.011  Score=55.62  Aligned_cols=111  Identities=24%  Similarity=0.350  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHH--------
Q 007114          330 IASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLE--------  401 (617)
Q Consensus       330 ~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~e--------  401 (617)
                      ...||-....|..|+..++.+++.|...|.++..+|..|   +.|+..||.+|-..+.++..++...+....        
T Consensus         2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL---~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l   78 (143)
T PF12718_consen    2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSL---QKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQL   78 (143)
T ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Confidence            357888999999999999999999999999999888775   567778888888877777777766555432        


Q ss_pred             --HHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH
Q 007114          402 --KQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE  443 (617)
Q Consensus       402 --eqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE  443 (617)
                        ....+.-.+-..+.-..+...|+-.+.-+|++.|-++..|-.
T Consensus        79 ~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~  122 (143)
T PF12718_consen   79 NRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQ  122 (143)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence              233333334444444444445555555555555555555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.34  E-value=0.17  Score=53.53  Aligned_cols=210  Identities=22%  Similarity=0.227  Sum_probs=149.9

Q ss_pred             HHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhh----HHHHHHHHHHHHH
Q 007114          249 LKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAG----LRSKLDSLVKQVE  324 (617)
Q Consensus       249 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REse----l~sKLkslEeqL~  324 (617)
                      |+-||-.-.|-+..||-..+++.-|+..|-+=.           ++=|...-||.-+.+|+.|    |..|+.+=   .-
T Consensus        75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~-----------dqsq~skrdlelafqr~rdEw~~lqdkmn~d---~S  140 (305)
T PF14915_consen   75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDH-----------DQSQTSKRDLELAFQRARDEWVRLQDKMNSD---VS  140 (305)
T ss_pred             HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHhhHHHHHHHHHHHhhHHHHHHHHhcch---HH
Confidence            455555556677889999999999998875432           3456677788888888877    34444321   11


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007114          325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQN  404 (617)
Q Consensus       325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn  404 (617)
                      .+..-|+-|-.++++||+++..-+.++-....+             |++|.=.||                  ..+-.+.
T Consensus       141 ~lkd~ne~LsQqLskaesK~nsLe~elh~trda-------------LrEKtL~lE------------------~~QrdL~  189 (305)
T PF14915_consen  141 NLKDNNEILSQQLSKAESKFNSLEIELHHTRDA-------------LREKTLALE------------------SVQRDLS  189 (305)
T ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH------------------HHHHHHH
Confidence            444557788888888888766655554444333             444444443                  3444455


Q ss_pred             hHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 007114          405 MLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRT  484 (617)
Q Consensus       405 ~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~t  484 (617)
                      .....++.||++--.=+.||++.-.+-++.|.+..+|--.|+=|-+.|.-...|+..           |.-++-||.-  
T Consensus       190 Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~-----------kek~ViniQ~--  256 (305)
T PF14915_consen  190 QTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN-----------KEKTVINIQD--  256 (305)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhHHH--
Confidence            566789999999999999999999999999999999999998887777766666544           4446666654  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114          485 KVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ  520 (617)
Q Consensus       485 K~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k  520 (617)
                       -|.|.|.+|-.|+++   |+..|-+.|+-|+.+|.
T Consensus       257 -~f~d~~~~L~ae~ek---q~lllEErNKeL~ne~n  288 (305)
T PF14915_consen  257 -QFQDIVKKLQAESEK---QVLLLEERNKELINECN  288 (305)
T ss_pred             -HHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHH
Confidence             377889999999885   56677788888888886

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.33  E-value=0.33  Score=54.99  Aligned_cols=105  Identities=18%  Similarity=0.159  Sum_probs=76.5

Q ss_pred             HHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhh
Q 007114          403 QNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGI  482 (617)
Q Consensus       403 qn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~  482 (617)
                      ...+...+++|.++|++++.-+..-+.++..|+++|.+.-+++-+   |..--+..++.||++|++++..=-..-++-+-
T Consensus       441 ~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~ee---e~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~  517 (581)
T KOG0995|consen  441 LETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEE---EWKKCRKEIEKLEEELLNLKLVLNTSMKEAEE  517 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566799999999999999999999999999999999988865   45667778999999998665433333333333


Q ss_pred             hhHHHH----HHHHHHHHHHHHHHHhhhhhhh
Q 007114          483 RTKVIT----NLVMQMAVERERLRQQISSLAM  510 (617)
Q Consensus       483 ~tK~i~----dLv~QLa~ErErL~~Qissl~~  510 (617)
                      .-+.|.    .+|.-...||+.+++|+.-+..
T Consensus       518 ~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~  549 (581)
T KOG0995|consen  518 LVKSIELELDRMVATGEEERQKIAKQLFAVID  549 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333332    3455566789999999776643

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.29  E-value=0.071  Score=61.41  Aligned_cols=209  Identities=20%  Similarity=0.221  Sum_probs=134.1

Q ss_pred             HHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHH
Q 007114          295 LQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEK  374 (617)
Q Consensus       295 Lq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEK  374 (617)
                      +..+..+|.++.+.|.|||+++.++...=+.+...+..++.+....++|..+...-+.+=-.+=..|-.+|.   +.+.+
T Consensus       427 vkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~---eE~~~  503 (697)
T PF09726_consen  427 VKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLA---EERRQ  503 (697)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            345678899999999999999775555433455555556655555565555554444433333333333332   23455


Q ss_pred             HHHHHHHHHHhHHHHHHHHH-hHH-------HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHh--
Q 007114          375 VESLERQLRESDIQLQHAVA-YAE-------ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEA--  444 (617)
Q Consensus       375 v~sLEkQLkEse~QL~~A~A-Sae-------a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEt--  444 (617)
                      -..+|+||.+=..+-..+.+ .+.       ...+--+.++...++||+=|.-|+..+-..|.+...+|.+...|-..  
T Consensus       504 R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~  583 (697)
T PF09726_consen  504 RASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEK  583 (697)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66788888776654332211 111       12345566788899999999999999999999999998887544332  


Q ss_pred             -----hhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHH---HHHHHHHHHHhhh
Q 007114          445 -----NAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQ---MAVERERLRQQIS  506 (617)
Q Consensus       445 -----N~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~Q---La~ErErL~~Qis  506 (617)
                           --.|--.|+.+++|..-||++|.+-.--|..=-.-+|--++-++.+--+   =-.|..-|+..|.
T Consensus       584 e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~  653 (697)
T PF09726_consen  584 ESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA  653 (697)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2346778899999999999999988877777666666655544443333   3334444444333

; GO: 0016021 integral to membrane

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.25  E-value=0.085  Score=63.45  Aligned_cols=223  Identities=20%  Similarity=0.230  Sum_probs=150.3

Q ss_pred             HhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchh
Q 007114          228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQ  307 (617)
Q Consensus       228 SlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~  307 (617)
                      |=++.-+||+.|..-...-+.+...+|+.       ||....+-.|.-+.+|-.+.+.-..+.+..              
T Consensus       776 s~~~v~~le~~l~~~~~~~~~~~~~~~~~-------ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~--------------  834 (1293)
T KOG0996|consen  776 SKESVEKLERALSKMSDKARQHQEQLHEL-------EERVRKLRERIPELENRLEKLTASVKRLAE--------------  834 (1293)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHhHHHHHHHHHHHHHH--------------
Confidence            44455567777776666666666665554       444455555555555655555555555544              


Q ss_pred             chhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh-----HHhhHHHhhhhhhhhhhh
Q 007114          308 REAGLRSKLDSLVKQ----------VEVKESVIASLRENLSEAQARADGAEVRCKSL-----AETNIELNEDLKGSRATS  372 (617)
Q Consensus       308 REsel~sKLkslEeq----------L~~len~~e~LKe~i~~AEsra~~aeskc~~L-----teTN~eL~~el~~Lk~ls  372 (617)
                      ++..+.+.++++|.+          |+.++..|+++|..+.++...+.- .++.+.|     .-.|..++..-+.++.+.
T Consensus       835 ~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~  913 (1293)
T KOG0996|consen  835 LIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKIN  913 (1293)
T ss_pred             HHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHH
Confidence            444445555555544          336777778888777777433333 3444444     344555666666666677


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHH
Q 007114          373 EKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEI  452 (617)
Q Consensus       373 EKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL  452 (617)
                      +++.-|+..++-...+...+..-....+...+.+...+.+++.=+++|.+.+...+.++.--+.+..--.+.=-+++.++
T Consensus       914 ~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~  993 (1293)
T KOG0996|consen  914 EQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKEL  993 (1293)
T ss_pred             HHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777766777777888888888899888888888888888888777777777777777888888


Q ss_pred             HhhHhHHHHHHHHHHHHHHH
Q 007114          453 SFLRDRLECLEASLHQAEET  472 (617)
Q Consensus       453 ~fLksr~~~LE~~L~qa~~~  472 (617)
                      .-+++.++.++++...+...
T Consensus       994 ~~~k~~~e~i~k~~~~lk~~ 1013 (1293)
T KOG0996|consen  994 RDLKSELENIKKSENELKAE 1013 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            88888888888887766543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.25  E-value=0.86  Score=55.24  Aligned_cols=63  Identities=19%  Similarity=0.269  Sum_probs=37.8

Q ss_pred             hhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114          111 DSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL  183 (617)
Q Consensus       111 DSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~  183 (617)
                      +.++.....-+..++.+...++.          .+-..+..|++....+.+.+.++.++..+....+-+|..|
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~f  544 (1201)
T PF12128_consen  482 QEQQNQAQQAVEELQAEEQELRK----------ERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEF  544 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHH
Confidence            34444444445555544444443          2445567778888888888888888887776544444443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.16  E-value=0.12  Score=51.64  Aligned_cols=133  Identities=25%  Similarity=0.281  Sum_probs=94.2

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114          371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne  450 (617)
                      |.+.+..|.+|++..    ++|.--+.+..++++.+.+.++.+|.--..|-......|.-.++-.++..-|-+.|-+|..
T Consensus        41 L~~e~~~L~~q~~s~----Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~  116 (193)
T PF14662_consen   41 LAEEITDLRKQLKSL----QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLA  116 (193)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            455566777788765    4666777778888888899999999888888888888998899999999999999999999


Q ss_pred             HHHhhHhHHHHH-------HHHHHHHHHHhhhhhHhhhhhhHHHHHH----------HHHHHHHHHHHHHhhhh
Q 007114          451 EISFLRDRLECL-------EASLHQAEETKLATAKDIGIRTKVITNL----------VMQMAVERERLRQQISS  507 (617)
Q Consensus       451 EL~fLksr~~~L-------E~~L~qa~~~K~stakdI~~~tK~i~dL----------v~QLa~ErErL~~Qiss  507 (617)
                      |..-++.|...|       ..+++.-++-....-.-+.-+|+-|.+|          +..|-.|.-||..|++-
T Consensus       117 e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q  190 (193)
T PF14662_consen  117 ERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ  190 (193)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999876655       5566533333222222233334444443          44555666666666643

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=97.12  E-value=0.7  Score=51.86  Aligned_cols=101  Identities=21%  Similarity=0.299  Sum_probs=82.3

Q ss_pred             HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH---HHhhhhhHhhhh
Q 007114          406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE---ETKLATAKDIGI  482 (617)
Q Consensus       406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~---~~K~stakdI~~  482 (617)
                      |.-.+.+.++.|.+|..-.-+-|.|.-.|-++|-.+-++|.   .|+...+-..+.||+.|.+++   +.++.-+.+.-.
T Consensus       485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vq  561 (622)
T COG5185         485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQ  561 (622)
T ss_pred             HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHH
Confidence            45568999999999999999999999999999999999985   578888999999999998765   456666776666


Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHhhhhhh
Q 007114          483 RTKVIT-NLVMQMAVERERLRQQISSLA  509 (617)
Q Consensus       483 ~tK~i~-dLv~QLa~ErErL~~Qissl~  509 (617)
                      ++.+-- .+.--+..+|..+|+||--+.
T Consensus       562 s~~i~ld~~~~~~n~~r~~i~k~V~~v~  589 (622)
T COG5185         562 STEIKLDELKVDLNRKRYKIHKQVIHVI  589 (622)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665543 355567889999999986553

>PRK01156 chromosome segregation protein; Provisional

Probab=97.10  E-value=0.91  Score=52.64  Aligned_cols=43  Identities=19%  Similarity=0.222  Sum_probs=22.0

Q ss_pred             hhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHH
Q 007114          346 GAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQ  388 (617)
Q Consensus       346 ~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~Q  388 (617)
                      ....+...|.....++......+..+..++..+++.++.....
T Consensus       343 ~~~~~~~~l~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~  385 (895)
T PRK01156        343 KKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKN  385 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3344444455555555555555555555555555555544443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.07  E-value=1.5  Score=54.76  Aligned_cols=214  Identities=17%  Similarity=0.145  Sum_probs=123.4

Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHH
Q 007114          149 EEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKS  228 (617)
Q Consensus       149 ~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkS  228 (617)
                      ..+|...+..|.++.+.+.+|..+..++++-...+...-+                 ..        ++......-+...
T Consensus       299 ~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyle-----------------L~--------ee~lr~q~ei~~l  353 (1486)
T PRK04863        299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN-----------------LV--------QTALRQQEKIERY  353 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HH--------HHHHHHHHHHHHH
Confidence            4567778888888888888888888888887765532100                 00        0001112223333


Q ss_pred             hhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHH---HHhHHHHhhhcccc
Q 007114          229 LAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKEL---LGRLQIVLFNMNGS  305 (617)
Q Consensus       229 lA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel---~gkLq~~qf~L~as  305 (617)
                      ...--+|+..+.+..+..++++.++...+.+...+|+....+-.++.+.......+.......   +.++...+--+...
T Consensus       354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~  433 (1486)
T PRK04863        354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLP  433 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            333345777777777777777777777777788888877777777777666666666665433   34444444444435


Q ss_pred             hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHh------------hHHHhhhhhhhhhhhH
Q 007114          306 VQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAET------------NIELNEDLKGSRATSE  373 (617)
Q Consensus       306 ~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteT------------N~eL~~el~~Lk~lsE  373 (617)
                      .....+|.+.+...+.++..++..+.+++.+...++...++-......+...            =.++=.....++-+-.
T Consensus       434 ~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~  513 (1486)
T PRK04863        434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAE  513 (1486)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            5566666666666666666666666666666655555554444433333111            0111111122222555


Q ss_pred             HHHHHHHHHHHhHH
Q 007114          374 KVESLERQLRESDI  387 (617)
Q Consensus       374 Kv~sLEkQLkEse~  387 (617)
                      .+..+..+|.+.+-
T Consensus       514 ~~~~~~~~~~~l~~  527 (1486)
T PRK04863        514 QLQQLRMRLSELEQ  527 (1486)
T ss_pred             hhHHHHHHHHHHHH
Confidence            66677777777666

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.06  E-value=0.00014  Score=84.21  Aligned_cols=364  Identities=21%  Similarity=0.239  Sum_probs=0.0

Q ss_pred             HHHHhhhhhhhHH---HhHHHHHHHHHHHHhhhhhhhcccccc-chhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHH
Q 007114          102 AFDLLSGLLDSEL---RELENFITTLEADFVKAHELISSYTEL-GKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQ  177 (617)
Q Consensus       102 eFDlL~gilDSEv---~Ele~~~~tlq~~I~~~~~~i~s~~~~-g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fq  177 (617)
                      +.|.|..-+|-|.   .+|+.=+..++.+|..++.++-.+... .+.+-....||   ...|..+++++-+.+...++..
T Consensus       272 e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL---~~~L~el~e~le~~~~~~~~Le  348 (859)
T PF01576_consen  272 ELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKL---ERKLQELQEQLEEANAKVSSLE  348 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888654   567777888999999999887665442 11121222222   2345555666666666666666


Q ss_pred             HHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhh
Q 007114          178 RTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFE  257 (617)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~e  257 (617)
                      |+-..|..+-           +                    ....-|++.-+.--.|||+-.-+-..-.+++.++....
T Consensus       349 K~k~rL~~El-----------e--------------------Dl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~  397 (859)
T PF01576_consen  349 KTKKRLQGEL-----------E--------------------DLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ  397 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHH-----------H--------------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            6654442110           0                    11122444444445556665555555556666665555


Q ss_pred             HHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114          258 QELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENL  337 (617)
Q Consensus       258 qe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i  337 (617)
                      .+...+.-.+..++..+|.--|..+-+......+-..-..++..|....-.-++....+..|++..+.|+....+++..+
T Consensus       398 ~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~l  477 (859)
T PF01576_consen  398 AERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQL  477 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666665555555544444444444444443333333333334455666666666666666666


Q ss_pred             HHHHhhhhhhhHhhhhhHHhhHHHhhhh--------------------------------------------------hh
Q 007114          338 SEAQARADGAEVRCKSLAETNIELNEDL--------------------------------------------------KG  367 (617)
Q Consensus       338 ~~AEsra~~aeskc~~LteTN~eL~~el--------------------------------------------------~~  367 (617)
                      .++|...+..+.+..-|.-.-.+++.++                                                  +.
T Consensus       478 eE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~e  557 (859)
T PF01576_consen  478 EEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNE  557 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666555555554443333333222                                                  11


Q ss_pred             hhh-----------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh-------hh
Q 007114          368 SRA-----------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA-------DS  429 (617)
Q Consensus       368 Lk~-----------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA-------ES  429 (617)
                      |..           +...+.-+..|++++..++..+....+....++..+...++.|.+=++++...+..|       |+
T Consensus       558 Le~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~  637 (859)
T PF01576_consen  558 LEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAES  637 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111           222334455555666556666665666555566666666667777777777665543       44


Q ss_pred             hhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHH
Q 007114          430 RADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERE  499 (617)
Q Consensus       430 RAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErE  499 (617)
                      ..+-+..+|..|+-.|..|..+..-|.+++..|+..|..+...-....+-+-.-..-+..|..+|..||.
T Consensus       638 el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~  707 (859)
T PF01576_consen  638 ELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQD  707 (859)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            4444455566677777778888888888888888888765555444433332222223334455555554

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK11637 AmiB activator; Provisional

Probab=97.02  E-value=0.59  Score=50.13  Aligned_cols=44  Identities=16%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114          311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL  354 (617)
Q Consensus       311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L  354 (617)
                      +++.+|++++++++..++.+.+++..+.+++......+.+...+
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~   87 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA   87 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666555555555555555555554444443333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.02  E-value=1.8  Score=54.81  Aligned_cols=352  Identities=19%  Similarity=0.201  Sum_probs=164.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHH
Q 007114          147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLE  226 (617)
Q Consensus       147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLE  226 (617)
                      .+-..|..+..-+++..-.+.-.|.+..-|-.+...|..+-.-      -  ..-+.+-......|||-.   +++.+.+
T Consensus       728 ~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~------l--~~e~~~L~~~l~~lQt~~---~~~e~s~  796 (1822)
T KOG4674|consen  728 TLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEK------L--SAEQESLQLLLDNLQTQK---NELEESE  796 (1822)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            4556777778888888888888888887777777655321110      0  000011122334555533   3333332


Q ss_pred             HHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccch
Q 007114          227 KSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSV  306 (617)
Q Consensus       227 kSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~  306 (617)
                      -  |..-++|.++.+....-..|+.++   +++...+.+...+..--+-.|-|....+......++.-|-..+.++.-..
T Consensus       797 ~--~~k~~~e~~i~eL~~el~~lk~kl---q~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le  871 (1822)
T KOG4674|consen  797 M--ATKDKCESRIKELERELQKLKKKL---QEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLE  871 (1822)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  233344444444433334444333   33333444444444444444444444444444333333333333333333


Q ss_pred             hchhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhh
Q 007114          307 QREAGLRSKLDSLVKQVE-------------------VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKG  367 (617)
Q Consensus       307 ~REsel~sKLkslEeqL~-------------------~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~  367 (617)
                      .+=++|..+|++.+.++.                   ....-+.+||.++-.|.+...+-....+.+..+=.+.+.++++
T Consensus       872 ~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde  951 (1822)
T KOG4674|consen  872 IKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDE  951 (1822)
T ss_pred             HHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333332222222                   2222334444444444444444444444444444444444444


Q ss_pred             hhh---------------hhHHHHHHHHHHHHhHHH-----------HHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHH
Q 007114          368 SRA---------------TSEKVESLERQLRESDIQ-----------LQHAVAYAEASLEKQNMLYSTVKDMENLIQDLK  421 (617)
Q Consensus       368 Lk~---------------lsEKv~sLEkQLkEse~Q-----------L~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK  421 (617)
                      .+.               +.+++..|++++-....+           +.+++.....-+.+...+...++++...|.++|
T Consensus       952 ~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k 1031 (1822)
T KOG4674|consen  952 TRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQ 1031 (1822)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443               333333333333333322           223333333333344445555666666666666


Q ss_pred             Hhhhhhhhhhhh----HHHHH---hhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 007114          422 LKVSKADSRADS----AEEKL---IILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQM  494 (617)
Q Consensus       422 ~KvskAESRAe~----AE~kc---~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QL  494 (617)
                      ..+..-..-+..    +|...   .-++.+=.+|.++++-+.+.+..|.....++...=..-.+++..+.+...+     
T Consensus      1032 ~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leq----- 1106 (1822)
T KOG4674|consen 1032 NDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQ----- 1106 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHH-----
Confidence            554433222222    22222   233333344555555555566666665555555555555666665555443     


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 007114          495 AVERERLRQQISSLAMENKVMVVKLQQ  521 (617)
Q Consensus       495 a~ErErL~~Qissl~~eNk~L~~k~k~  521 (617)
                        |+.-+..+|.+|-..|++|...+..
T Consensus      1107 --e~~~~~~~~~~L~~qNslLh~qie~ 1131 (1822)
T KOG4674|consen 1107 --EVNELKKRIESLEKQNSLLHDQFEE 1131 (1822)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              4455667777777777777666653

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.99  E-value=0.071  Score=61.39  Aligned_cols=34  Identities=29%  Similarity=0.485  Sum_probs=28.3

Q ss_pred             HHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhH
Q 007114          222 LRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQ  258 (617)
Q Consensus       222 LrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eq  258 (617)
                      ..=||.-|.+   |-..|..+|+.|.||+.++...+.
T Consensus       420 ~~rLE~dvkk---LraeLq~~Rq~E~ELRsqis~l~~  453 (697)
T PF09726_consen  420 ISRLEADVKK---LRAELQSSRQSEQELRSQISSLTN  453 (697)
T ss_pred             HHHHHHHHHH---HHHHHHhhhhhHHHHHHHHhhccc
Confidence            4458888888   889999999999999999875443

; GO: 0016021 integral to membrane

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=96.96  E-value=0.28  Score=56.03  Aligned_cols=50  Identities=18%  Similarity=0.141  Sum_probs=32.6

Q ss_pred             HhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHH
Q 007114          275 FEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE  324 (617)
Q Consensus       275 ~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~  324 (617)
                      +|-+..++-|.|..-.+..|++.+--.+.-...+.....+....||.+|.
T Consensus        11 ~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~   60 (617)
T PF15070_consen   11 AERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLS   60 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777777777777777776666666665555556666655665555

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.77  E-value=0.39  Score=54.34  Aligned_cols=287  Identities=21%  Similarity=0.220  Sum_probs=140.1

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHH
Q 007114          147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLE  226 (617)
Q Consensus       147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLE  226 (617)
                      .+.++|.+|=+..+++..|=..+..+.--|+.++         ..+.          ++++...                
T Consensus        46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~---------~~~t----------s~ik~~y----------------   90 (546)
T KOG0977|consen   46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV---------GRET----------SGIKAKY----------------   90 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------cCCC----------cchhHHh----------------
Confidence            4567777777777777777777777776666655         2211          1222222                


Q ss_pred             HHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccch
Q 007114          227 KSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSV  306 (617)
Q Consensus       227 kSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~  306 (617)
                               |..|..++...++-.-..+.++.+...+.+..+++-.||.+++.....-+.......++|..++..++=.-
T Consensus        91 ---------e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~k  161 (546)
T KOG0977|consen   91 ---------EAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLK  161 (546)
T ss_pred             ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH
Confidence                     22233344444444444555566666666666666666666666666666666666666666655554333


Q ss_pred             hchhhHHHHHH--------------HHHHHHH-------HHHHHHHHHHHHHHHHHhhhhh--hhHhhhhhHHh------
Q 007114          307 QREAGLRSKLD--------------SLVKQVE-------VKESVIASLRENLSEAQARADG--AEVRCKSLAET------  357 (617)
Q Consensus       307 ~REsel~sKLk--------------slEeqL~-------~len~~e~LKe~i~~AEsra~~--aeskc~~LteT------  357 (617)
                      .|=..+.+.++              .+-.||.       +++|-+.+|++.+.-...--.+  -+...+.=.+|      
T Consensus       162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~  241 (546)
T KOG0977|consen  162 RRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNRE  241 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchH
Confidence            33222222222              2222221       3444444444433322110000  00000000011      


Q ss_pred             --hHHHhhhhhhhhh-----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhh
Q 007114          358 --NIELNEDLKGSRA-----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSR  430 (617)
Q Consensus       358 --N~eL~~el~~Lk~-----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESR  430 (617)
                        -.+|..-|.++++     ...-=+.+|.+   |+..++.+..+++-....++...-++.-|-+.|.+|..|++..|+|
T Consensus       242 ~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~---Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~  318 (546)
T KOG0977|consen  242 YFKNELALAIREIRAQYEAISRQNRKDIESW---YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESR  318 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhcccccc
Confidence              1122222222222     00000122222   4445666666666656666667777888888888888888888874


Q ss_pred             hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHH
Q 007114          431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERL  501 (617)
Q Consensus       431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL  501 (617)
                                    |.-|...+.+|+..+..-...-.++.+.|......       +.+=.++|..|.+.|
T Consensus       319 --------------n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~-------mReec~~l~~Elq~L  368 (546)
T KOG0977|consen  319 --------------NSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAK-------MREECQQLSVELQKL  368 (546)
T ss_pred             --------------ChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHh
Confidence                          55555555555554444444444444444433221       233345555555554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.73  E-value=0.11  Score=49.12  Aligned_cols=93  Identities=22%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHH
Q 007114          308 REAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDI  387 (617)
Q Consensus       308 REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~  387 (617)
                      |=..+..+++.+|.....++..|.+|-..+...|......+.+.......--+-.........++.|+..||.+|..++.
T Consensus        15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~   94 (143)
T PF12718_consen   15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEK   94 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence            33344444554554444555555555555555554444444443333222222222222222578889999999888888


Q ss_pred             HHHHHHHhHHHHH
Q 007114          388 QLQHAVAYAEASL  400 (617)
Q Consensus       388 QL~~A~ASaea~~  400 (617)
                      .|..+..-.....
T Consensus        95 ~L~e~~ekl~e~d  107 (143)
T PF12718_consen   95 KLKETTEKLREAD  107 (143)
T ss_pred             HHHHHHHHHHHHH
Confidence            8876665544433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.66  E-value=1.6  Score=48.93  Aligned_cols=52  Identities=25%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             HHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---h----hHHHHHHHHHHHHhHHHHHH
Q 007114          340 AQARADGAEVRCKSLAETNIELNEDLKGSRA---T----SEKVESLERQLRESDIQLQH  391 (617)
Q Consensus       340 AEsra~~aeskc~~LteTN~eL~~el~~Lk~---l----sEKv~sLEkQLkEse~QL~~  391 (617)
                      ++............+.+.|-+|..++..|+.   +    -+.+..++++|++.+.+...
T Consensus       308 vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~  366 (569)
T PRK04778        308 VEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDE  366 (569)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455556677777788888887777   2    23355555555555555443

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.66  E-value=1.3  Score=48.00  Aligned_cols=39  Identities=13%  Similarity=0.198  Sum_probs=31.3

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Q 007114          146 IEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALD  184 (617)
Q Consensus       146 ~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~  184 (617)
                      ..+.+++...+..+.+.+.++..+..+.+.|++.+..+.
T Consensus       170 ~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~  208 (562)
T PHA02562        170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQR  208 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            345677778888888888888888888888888887664

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.65  E-value=2.5  Score=51.07  Aligned_cols=138  Identities=20%  Similarity=0.267  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHH
Q 007114          313 RSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHA  392 (617)
Q Consensus       313 ~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A  392 (617)
                      ..-+.+++.||..++..+.+|+..+.+++.+...++...+.+                 ...++..-+.++.-+.++-.-
T Consensus       828 ~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~-----------------~~el~~~k~k~~~~dt~i~~~  890 (1174)
T KOG0933|consen  828 EKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKA-----------------QAELKDQKAKQRDIDTEISGL  890 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH-----------------HHHHHHHHHHHHhhhHHHhhh
Confidence            333445555555555555555555555555555544444433                 334444455555556555555


Q ss_pred             HHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH-----------------hhhhhHHHHHhh
Q 007114          393 VAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE-----------------ANAGLTEEISFL  455 (617)
Q Consensus       393 ~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE-----------------tN~eLneEL~fL  455 (617)
                      ..+-+...-+-.+...++.-+++=+.-++..-..+..+++.-+.+..-|++                 +=-+-.++|.-|
T Consensus       891 ~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~L  970 (1174)
T KOG0933|consen  891 LTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKL  970 (1174)
T ss_pred             hhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHh
Confidence            555566555555666666666666666666666666666666666666652                 113445778888


Q ss_pred             HhHHHHHHHHHH
Q 007114          456 RDRLECLEASLH  467 (617)
Q Consensus       456 ksr~~~LE~~L~  467 (617)
                      ..+...|++.+.
T Consensus       971 q~k~~~l~k~vn  982 (1174)
T KOG0933|consen  971 QEKKEKLEKTVN  982 (1174)
T ss_pred             hHHHHHHHhhcC
Confidence            888888888775

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.62  E-value=0.00049  Score=77.73  Aligned_cols=164  Identities=24%  Similarity=0.312  Sum_probs=0.0

Q ss_pred             HhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhH---HHHHHHHHhHHHhHhhhHHHHHHHHHhhh
Q 007114          349 VRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYA---EASLEKQNMLYSTVKDMENLIQDLKLKVS  425 (617)
Q Consensus       349 skc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASa---ea~~eeqn~l~S~IsdMEnvIEeLK~Kvs  425 (617)
                      +++..|..+|.+|..++..|+...+.+..|+++.+..+.++..+...-   ...+.+...+..++..+..++.+.-..+.
T Consensus       257 ~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~  336 (722)
T PF05557_consen  257 AHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFD  336 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            467889999999999999999988889999999988888877766443   33444566777788888887776442111


Q ss_pred             hhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 007114          426 KADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQI  505 (617)
Q Consensus       426 kAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qi  505 (617)
                      --+    .--..+..|--.|+-|.++++.+.+.+..|+..+..++..+...-..|.--+..+..    +..-+.||+.|.
T Consensus       337 sPe----~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~----~~~~~~RLerq~  408 (722)
T PF05557_consen  337 SPE----DLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEA----LKKLIRRLERQK  408 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            111    111234555556666666666666666666666655555444333333322222221    223344555555


Q ss_pred             hhhhhhhHHHHHHhh
Q 007114          506 SSLAMENKVMVVKLQ  520 (617)
Q Consensus       506 ssl~~eNk~L~~k~k  520 (617)
                      .-+.+|...|..-++
T Consensus       409 ~L~~kE~d~LR~~L~  423 (722)
T PF05557_consen  409 ALATKERDYLRAQLK  423 (722)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.58  E-value=3  Score=51.15  Aligned_cols=139  Identities=22%  Similarity=0.222  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhh
Q 007114          155 SEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMD  234 (617)
Q Consensus       155 ~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~d  234 (617)
                      +...|+--.+.=.+|+.-.+.-+.+++.+                        ...+.++-+-|-.-=|.|||+=|..--
T Consensus      1410 A~~A~~~A~~~~~~l~~~~ae~eq~~~~v------------------------~ea~~~aseA~~~Aq~~~~~a~as~~q 1465 (1758)
T KOG0994|consen 1410 AGGALLMAGDADTQLRSKLAEAEQTLSMV------------------------REAKLSASEAQQSAQRALEQANASRSQ 1465 (1758)
T ss_pred             cchHHHHhhhHHHHHHHHHHHHHHHHHHH------------------------HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            44445444555555566666666666533                        334445555555556888999888888


Q ss_pred             hHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhc-chHHHHhhhHHHHHHhHHHHhhhcc---cchhchh
Q 007114          235 LEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAE-NSAEVLKGISKELLGRLQIVLFNMN---GSVQREA  310 (617)
Q Consensus       235 LEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAE-Na~EvL~g~skel~gkLq~~qf~L~---as~~REs  310 (617)
                      .|+...+.+.+.++++.=|..-.-.-...|+.|+.+-+.++-.+ -.++-|.|.-++-+.+|..+..=|+   |-+.|=.
T Consensus      1466 ~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~ 1545 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAE 1545 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHH
Confidence            88888899998888888887766667778888888888777654 3567788888888888877665543   3344444


Q ss_pred             hHHHHHH
Q 007114          311 GLRSKLD  317 (617)
Q Consensus       311 el~sKLk  317 (617)
                      .|.+.-+
T Consensus      1546 ~L~s~A~ 1552 (1758)
T KOG0994|consen 1546 NLQSEAE 1552 (1758)
T ss_pred             HHHHHHH
Confidence            4444433

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.55  E-value=0.38  Score=56.55  Aligned_cols=129  Identities=23%  Similarity=0.267  Sum_probs=78.5

Q ss_pred             cccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-----------
Q 007114          302 MNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-----------  370 (617)
Q Consensus       302 L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-----------  370 (617)
                      |+.-..|..++.+++.++++|       ++.+-..++.+-.-......-|+.+..++--...++.+|++           
T Consensus       801 l~e~~~~l~~~q~e~~~~keq-------~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~  873 (970)
T KOG0946|consen  801 LSEESTRLQELQSELTQLKEQ-------IQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKE  873 (970)
T ss_pred             hhhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence            443444444444444444444       55555556655555556666666666666666666666554           


Q ss_pred             hhHHHHHHHHHHHHhHHH--HHHHHHh-----HHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHH
Q 007114          371 TSEKVESLERQLRESDIQ--LQHAVAY-----AEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEK  437 (617)
Q Consensus       371 lsEKv~sLEkQLkEse~Q--L~~A~AS-----aea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~k  437 (617)
                      ++||+.+|+.|.-.+..-  +...+.+     ...++.+|+.+.-.+.|.++.|.-||.++.+.+-+-+--|.+
T Consensus       874 ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q~~eeie~e  947 (970)
T KOG0946|consen  874 LTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQPVEEIEDE  947 (970)
T ss_pred             HhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCCChhhHHhh
Confidence            899999999765443211  1111111     223455677888888999999999999888888776554443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.54  E-value=3  Score=50.60  Aligned_cols=82  Identities=15%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             hhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhh
Q 007114          350 RCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVS  425 (617)
Q Consensus       350 kc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kvs  425 (617)
                      .|..+.+-+...+++++.|+.    ...|+..+...+.+.+.++...+..+++..++...+...+.+.-.-..++|.++-
T Consensus       282 ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~  361 (1074)
T KOG0250|consen  282 QLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIR  361 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444    3445566666666666777777777777666666666666666666666666666


Q ss_pred             hhhhhh
Q 007114          426 KADSRA  431 (617)
Q Consensus       426 kAESRA  431 (617)
                      +++++.
T Consensus       362 ~~~n~i  367 (1074)
T KOG0250|consen  362 EIENSI  367 (1074)
T ss_pred             HHHHHH
Confidence            665533

>PRK11637 AmiB activator; Provisional

Probab=96.35  E-value=1.4  Score=47.39  Aligned_cols=9  Identities=22%  Similarity=0.501  Sum_probs=5.0

Q ss_pred             cccccCCch
Q 007114          581 LRRIDAGLL  589 (617)
Q Consensus       581 vr~i~~~~l  589 (617)
                      |+.+.+|.+
T Consensus       342 v~A~~~G~V  350 (428)
T PRK11637        342 VKAIADGRV  350 (428)
T ss_pred             EEecCCeEE
Confidence            555555554

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.22  E-value=3.6  Score=48.09  Aligned_cols=310  Identities=21%  Similarity=0.234  Sum_probs=168.6

Q ss_pred             cccccchhhHHHHHhhhhHHHHHHHHH-------HHHHHHHHhh----HHHHHHHhhhhccCCCCCCCCCCCcccccccc
Q 007114          137 SYTELGKASIEMEEKLLDSEDSLQQSR-------DQILEIKKQS----AKFQRTLSALDREGNWISDKDTGSLEDDQFLN  205 (617)
Q Consensus       137 s~~~~g~~f~~~~~KL~~~~~sLkQ~~-------e~i~eik~qs----a~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~  205 (617)
                      +|......+..++..|..+..-+-|.-       +.++.++.+-    +.|+-|++.|+.                    
T Consensus       304 slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~--------------------  363 (786)
T PF05483_consen  304 SLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKE--------------------  363 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            444545566667776666665555442       3344555443    477888876631                    


Q ss_pred             hhhhhhhccHHHHHHHHHHHHHHhh-hhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHH
Q 007114          206 ENAKIKLQTAEQQRHFLRMLEKSLA-REMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVL  284 (617)
Q Consensus       206 ~~~~~~mqt~eQqR~iLrMLEkSlA-~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL  284 (617)
                            .=|.||||  +..+|.-|- --++|.++=.+..+.-+--..+=...+.-+.-|++-..-+.++ =--+-..|-|
T Consensus       364 ------lL~~Eqqr--~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ek-k~~eki~E~l  434 (786)
T PF05483_consen  364 ------LLTTEQQR--LKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEK-KQFEKIAEEL  434 (786)
T ss_pred             ------HHHHHHHH--HHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence                  12567777  455554432 2456666654433322111111111122222222222111110 0112345567


Q ss_pred             hhhHHHHHHhHHHHhh-------hcccchhchhhHHHHHHHHHHHHH----------------------------HHHHH
Q 007114          285 KGISKELLGRLQIVLF-------NMNGSVQREAGLRSKLDSLVKQVE----------------------------VKESV  329 (617)
Q Consensus       285 ~g~skel~gkLq~~qf-------~L~as~~REsel~sKLkslEeqL~----------------------------~len~  329 (617)
                      +|...++.|-||+.|.       .|++....|..-.-.++.+..+|+                            +|-..
T Consensus       435 q~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~e  514 (786)
T PF05483_consen  435 QGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALE  514 (786)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            7777777777776554       455555555444333333333332                            44445


Q ss_pred             HHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHH
Q 007114          330 IASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYS  408 (617)
Q Consensus       330 ~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S  408 (617)
                      ...+.++|.....+....-..++.|.+||.+|..+++.++. +..|...++-.+..++.-..+-.-.       -.....
T Consensus       515 lKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e-------~~~k~k  587 (786)
T PF05483_consen  515 LKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECE-------ILKKEK  587 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHH-------HhhhHH
Confidence            55667778788777777778888999999999999998888 7777778888888777644332222       222334


Q ss_pred             hHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH----HHhhhhhHhhhh
Q 007114          409 TVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE----ETKLATAKDIGI  482 (617)
Q Consensus       409 ~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~----~~K~stakdI~~  482 (617)
                      .|.-+++-+..|+-.|-+-..+.+.-..+-+.|----..-+.-++.|..+++.|+..+..+.    ..=...-+||..
T Consensus       588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~  665 (786)
T PF05483_consen  588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIES  665 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            56777777777776665444333332333333333333334456677777887777775332    223344555553

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.72  Score=54.38  Aligned_cols=164  Identities=20%  Similarity=0.225  Sum_probs=77.4

Q ss_pred             hHHHHHHhHHHHhhhcccchhchhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh-
Q 007114          287 ISKELLGRLQIVLFNMNGSVQREAGLRSKL-----------DSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL-  354 (617)
Q Consensus       287 ~skel~gkLq~~qf~L~as~~REsel~sKL-----------kslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L-  354 (617)
                      +++....+++.++++++|.+.+=+-=.+.|           +.+++.+..+-+....||+++..-+.+.-+.-++.-.+ 
T Consensus       647 ~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~  726 (970)
T KOG0946|consen  647 LAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLL  726 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHH
Confidence            455555666666666666654322222222           22333333344444444444444444333322222222 


Q ss_pred             --HHhhHHHhhhhhhh----hhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114          355 --AETNIELNEDLKGS----RATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD  428 (617)
Q Consensus       355 --teTN~eL~~el~~L----k~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE  428 (617)
                        .+.+--.+++++.+    +.+..+...|.++|.+.+.-.+.-+++...-.-.+..+.--+++=|++|+++|. .+.--
T Consensus       727 q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~-l~e~~  805 (970)
T KOG0946|consen  727 QGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN-LSEES  805 (970)
T ss_pred             hHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh-hhhhh
Confidence              22222223333332    335555566777775555555555555443333445555556777777777666 44444


Q ss_pred             hhhhhHHHHHhhHHHhhhhhHHH
Q 007114          429 SRADSAEEKLIILSEANAGLTEE  451 (617)
Q Consensus       429 SRAe~AE~kc~~LtEtN~eLneE  451 (617)
                      +|-++-.++.+.+-+.-..+.++
T Consensus       806 ~~l~~~q~e~~~~keq~~t~~~~  828 (970)
T KOG0946|consen  806 TRLQELQSELTQLKEQIQTLLER  828 (970)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555554443333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.07  E-value=3.4  Score=46.43  Aligned_cols=99  Identities=15%  Similarity=0.195  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH-hhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhH
Q 007114          328 SVIASLRENLSEAQARADGAEVRCKSLAETNIEL-NEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNML  406 (617)
Q Consensus       328 n~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL-~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l  406 (617)
                      .-...+.+.+..++........+...|... -.| ..++...+++.+++..++++++.....+......-...+++++.+
T Consensus       310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~s-Y~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel  388 (569)
T PRK04778        310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQS-YTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEI  388 (569)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            333344444444444444444444444322 112 344555555666666666666655555444444444455555555


Q ss_pred             HHhHhhhHHHHHHHHHhhhhh
Q 007114          407 YSTVKDMENLIQDLKLKVSKA  427 (617)
Q Consensus       407 ~S~IsdMEnvIEeLK~KvskA  427 (617)
                      ...+..++.-..+++..+...
T Consensus       389 ~e~leeie~eq~ei~e~l~~L  409 (569)
T PRK04778        389 LKQLEEIEKEQEKLSEMLQGL  409 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555444443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=96.04  E-value=4.9  Score=47.95  Aligned_cols=160  Identities=20%  Similarity=0.213  Sum_probs=98.5

Q ss_pred             hhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHH---HHHHHHhHHHhHhhhH-
Q 007114          343 RADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEA---SLEKQNMLYSTVKDME-  414 (617)
Q Consensus       343 ra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea---~~eeqn~l~S~IsdME-  414 (617)
                      .-..---+|+.|++-|+|++.++.+--.    +-.|++.+-+-+.+-+..-+.-..-...   .-++--.|-+..-.|+ 
T Consensus       167 ~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp  246 (1265)
T KOG0976|consen  167 IGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTP  246 (1265)
T ss_pred             HHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Confidence            3334456789999999999888765544    3334444433333322221111100000   0001011112222222 


Q ss_pred             --HHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 007114          415 --NLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVM  492 (617)
Q Consensus       415 --nvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~  492 (617)
                        ...--+++.+-..+--|..-|.+--.|---|.-|..|++-..-+|..+..-|..+........-||.-.+|++.--+|
T Consensus       247 ~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enm  326 (1265)
T KOG0976|consen  247 LRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENM  326 (1265)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence              122223333334444566677888888889999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHH
Q 007114          493 QMAVERERLR  502 (617)
Q Consensus       493 QLa~ErErL~  502 (617)
                      +|..+.--|+
T Consensus       327 kltrqkadir  336 (1265)
T KOG0976|consen  327 KLTRQKADIR  336 (1265)
T ss_pred             HHHHHHHHHH
Confidence            8877654443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.01  E-value=5.6  Score=48.39  Aligned_cols=55  Identities=29%  Similarity=0.283  Sum_probs=36.8

Q ss_pred             hHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHH
Q 007114          433 SAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVI  487 (617)
Q Consensus       433 ~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i  487 (617)
                      ..|.|...|...+.++.+.++.|+.+.+++-+.+..-+++|...-.+|..-.|-|
T Consensus       398 e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i  452 (1074)
T KOG0250|consen  398 ERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKI  452 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            3345777777777777778888888777777777777777666544444333333

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.94  E-value=0.002  Score=73.03  Aligned_cols=62  Identities=29%  Similarity=0.325  Sum_probs=0.0

Q ss_pred             HHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHH
Q 007114          403 QNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEA  464 (617)
Q Consensus       403 qn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~  464 (617)
                      .+.+.+.|...+.-|.+|+.+......|++..+-++..|.+.+..|..|-..+......|+.
T Consensus       358 ~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e  419 (713)
T PF05622_consen  358 ARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE  419 (713)
T ss_dssp             --------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456667778888889999988888889888888988888888777766655554444443

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=95.60  E-value=8.6  Score=47.49  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=15.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHH
Q 007114          479 DIGIRTKVITNLVMQMAVERERL  501 (617)
Q Consensus       479 dI~~~tK~i~dLv~QLa~ErErL  501 (617)
                      +.....+...+=+.|+..|+.|+
T Consensus       671 ~~e~~lk~~q~~~eq~~~E~~~~  693 (1317)
T KOG0612|consen  671 KLERKLKMLQNELEQENAEHHRL  693 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566777777777777777

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.53  E-value=4  Score=43.10  Aligned_cols=173  Identities=23%  Similarity=0.336  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHH
Q 007114          331 ASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA---TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLY  407 (617)
Q Consensus       331 e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~---lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~  407 (617)
                      +.+...|..-..+.+.--..+..+.+-|..|.+++..|-+   +++  ..+++.++--+.+.+.+.|--+.......+..
T Consensus       110 ~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE--~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~  187 (309)
T PF09728_consen  110 EKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELRE--EHFEKLLKQKELEVQLAEAKLEQQQEEAEQEK  187 (309)
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3334444445555566666777788889999998887776   322  23333443333333333333332222211111


Q ss_pred             HhHhhhHH-HHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHH
Q 007114          408 STVKDMEN-LIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKV  486 (617)
Q Consensus       408 S~IsdMEn-vIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~  486 (617)
                      ........ ++++..               +|..+.++-.+|...|+.|-.|...++..|...+..=.+-=+++.--+|-
T Consensus       188 ~k~~~~~~~~l~~~~---------------~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk  252 (309)
T PF09728_consen  188 EKAKQEKEILLEEAA---------------QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKK  252 (309)
T ss_pred             HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            11111111 222222               89999999999999999999999999999997777766666677666666


Q ss_pred             HHHH-----------------HHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114          487 ITNL-----------------VMQMAVERERLRQQISSLAMENKVMVVKLQ  520 (617)
Q Consensus       487 i~dL-----------------v~QLa~ErErL~~Qissl~~eNk~L~~k~k  520 (617)
                      |+.|                 +..++.||..+..++..+.+...-|-.=|+
T Consensus       253 ~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcR  303 (309)
T PF09728_consen  253 IKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCR  303 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6654                 456778888888888888777777766555

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.45  E-value=0.0039  Score=72.53  Aligned_cols=215  Identities=21%  Similarity=0.236  Sum_probs=0.0

Q ss_pred             HHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHH
Q 007114          236 EKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSK  315 (617)
Q Consensus       236 EkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sK  315 (617)
                      |..|.+.+..-.+..-.++-+...+..|+....++...+-++++..-.|.-.-..+..-|..++-.|..-...=..|..+
T Consensus       186 E~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~  265 (859)
T PF01576_consen  186 EAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQ  265 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHH
Confidence            44444555555555555555556666677777777777777777666665544445555554444443332222222222


Q ss_pred             HHHHHH-------HHH------------------------------------HHHHHHHHHHHHHHHHHhhhhhhhHhhh
Q 007114          316 LDSLVK-------QVE------------------------------------VKESVIASLRENLSEAQARADGAEVRCK  352 (617)
Q Consensus       316 LkslEe-------qL~------------------------------------~len~~e~LKe~i~~AEsra~~aeskc~  352 (617)
                      |..++.       |+.                                    .++..-..|-..+..++.....+..+|.
T Consensus       266 l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~  345 (859)
T PF01576_consen  266 LRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVS  345 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322221       111                                    2333333444556677777778888888


Q ss_pred             hhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114          353 SLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD  428 (617)
Q Consensus       353 ~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE  428 (617)
                      .|..+...|..++.-++.    .+-.+..||+..+-++.++...++-.+....+.+.+....+.+++=|-.|+..+..+.
T Consensus       346 ~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~  425 (859)
T PF01576_consen  346 SLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQ  425 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Confidence            888888888888877776    4445557777777777777777666666666666666666666666666666555554


Q ss_pred             hhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114          429 SRADSAEEKLIILSEANAGLTEEISFLRD  457 (617)
Q Consensus       429 SRAe~AE~kc~~LtEtN~eLneEL~fLks  457 (617)
                      .       .+..|...|-.|..||.-|.+
T Consensus       426 e-------~~e~lere~k~L~~El~dl~~  447 (859)
T PF01576_consen  426 E-------QLEELERENKQLQDELEDLTS  447 (859)
T ss_dssp             -----------------------------
T ss_pred             H-------HHHHHHHHHHHHHHhhccchh
Confidence            3       333444445555555555544

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=95.41  E-value=3.4  Score=41.66  Aligned_cols=119  Identities=18%  Similarity=0.233  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhH
Q 007114          311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESD  386 (617)
Q Consensus       311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse  386 (617)
                      -|...|+.|-.-+..+|..+..|-.+-...|.-.+.-.++..-|.+-|.+|..+.+.|+.    |..+-..|-.|+=+|+
T Consensus        64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e  143 (193)
T PF14662_consen   64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFE  143 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            344444555555556677777777778888888888888899999999999999999988    7677788899998999


Q ss_pred             HHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhh
Q 007114          387 IQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADS  429 (617)
Q Consensus       387 ~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAES  429 (617)
                      .-+-+-.+.+...--+.+.+...|-..-.++++|+.++++.|.
T Consensus       144 ~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEe  186 (193)
T PF14662_consen  144 SLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEE  186 (193)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877777777777777777777777888888888888774

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.37  E-value=9.4  Score=46.49  Aligned_cols=156  Identities=20%  Similarity=0.207  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCC
Q 007114          117 LENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTG  196 (617)
Q Consensus       117 le~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~  196 (617)
                      |....+||+.+=.+.+.+..+-..+......=+..+.+++.-....++.++++.+-..+-++.++++-. |..++++   
T Consensus       317 l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~-G~Ss~~~---  392 (1174)
T KOG0933|consen  317 LNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTA-GLSSNED---  392 (1174)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccCcc---
Confidence            444445555544444444443333332333333334444444444566666666666666666666632 1111111   


Q ss_pred             CcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHh
Q 007114          197 SLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFE  276 (617)
Q Consensus       197 ~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~E  276 (617)
                             .+....-.|+                    +---.+++++--.+..++|+.+...|.+..|-.......+...
T Consensus       393 -------~e~~l~~ql~--------------------~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~  445 (1174)
T KOG0933|consen  393 -------EEKTLEDQLR--------------------DAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVK  445 (1174)
T ss_pred             -------chhhHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHH
Confidence                   1111111111                    1112455666667788899999999999999999999999999


Q ss_pred             hcchHHHHhhhHHHHHHhHHHHhhhcc
Q 007114          277 AENSAEVLKGISKELLGRLQIVLFNMN  303 (617)
Q Consensus       277 AENa~EvL~g~skel~gkLq~~qf~L~  303 (617)
                      -.+.+.++...-..+..+|+.+-|+-+
T Consensus       446 ~~~~ld~~q~eve~l~~~l~~l~~~~~  472 (1174)
T KOG0933|consen  446 DIEELDALQNEVEKLKKRLQSLGYKIG  472 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999999888766

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=95.21  E-value=2.1  Score=41.01  Aligned_cols=83  Identities=25%  Similarity=0.277  Sum_probs=64.7

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114          371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne  450 (617)
                      +.++|-+||+.|..++.....+..-++..+..              |+.|+..++..-+.-...+....-|+..+-.|++
T Consensus        22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~e--------------ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k   87 (140)
T PF10473_consen   22 LEDHVESLERELEMSQENKECLILDAENSKAE--------------IETLEEELEELTSELNQLELELDTLRSEKENLDK   87 (140)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57799999999999999999999999998877              3344444444333344444578888899999999


Q ss_pred             HHHhhHhHHHHHHHHHH
Q 007114          451 EISFLRDRLECLEASLH  467 (617)
Q Consensus       451 EL~fLksr~~~LE~~L~  467 (617)
                      +|.-.++|+..||....
T Consensus        88 ~lq~~q~kv~eLE~~~~  104 (140)
T PF10473_consen   88 ELQKKQEKVSELESLNS  104 (140)
T ss_pred             HHHHHHHHHHHHHHHhH
Confidence            99999999888887765

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.19  E-value=2.8  Score=43.29  Aligned_cols=132  Identities=25%  Similarity=0.324  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhh--hhHHH
Q 007114          374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANA--GLTEE  451 (617)
Q Consensus       374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~--eLneE  451 (617)
                      ....|+-..++..--|..+++--++.......+..++.+|++-|-.+...+.++..|-..++.+...-|..+.  .|+.|
T Consensus        18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E   97 (239)
T COG1579          18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE   97 (239)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            4456666666666667777777777777777777778888888888888888888888888888866665553  68999


Q ss_pred             HHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 007114          452 ISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQI  505 (617)
Q Consensus       452 L~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qi  505 (617)
                      +..++.|..+|+..|..+......-.+.|..-..-+.++...++..+.++-.-+
T Consensus        98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~  151 (239)
T COG1579          98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV  151 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888888888888888888888888777765443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=95.18  E-value=8.9  Score=45.03  Aligned_cols=230  Identities=21%  Similarity=0.227  Sum_probs=147.7

Q ss_pred             hcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHhhhhhhhHhhhhh
Q 007114          277 AENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKE-SVIASLR-ENLSEAQARADGAEVRCKSL  354 (617)
Q Consensus       277 AENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~le-n~~e~LK-e~i~~AEsra~~aeskc~~L  354 (617)
                      +.=..+.++|-+++..++|+             --.+.-++++..++..+. ....+++ .+...++.|+.+.....+-|
T Consensus       376 ~~~~le~~k~~~ke~~~~~~-------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~L  442 (698)
T KOG0978|consen  376 NELRLEMLKSLLKEQRDKLQ-------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEEL  442 (698)
T ss_pred             HHHHHHHHhCCCHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence            44456778888888888887             111222235555555322 2233333 35556666666666666666


Q ss_pred             HHhhHHHhhhhhhhhh-------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh
Q 007114          355 AETNIELNEDLKGSRA-------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA  427 (617)
Q Consensus       355 teTN~eL~~el~~Lk~-------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA  427 (617)
                      ..++-..+.-++++..       .++...-|=.|+++.+-.--....+.....-.++.+..+..-|+..|-.|+..+...
T Consensus       443 qk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~  522 (698)
T KOG0978|consen  443 QKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL  522 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555555555544       444444444555555544444445555555577888999999999999999999999


Q ss_pred             hhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHH-------HHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHH
Q 007114          428 DSRADSAEEKLIILSEANAGLTEEISFLRDRLE-------CLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERER  500 (617)
Q Consensus       428 ESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~-------~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErEr  500 (617)
                      +-+...-|.+...|+..=..|..|+..+...++       .+..+++.+.......-++    -+=|...+..+..|.+.
T Consensus       523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~----le~i~~~~~e~~~ele~  598 (698)
T KOG0978|consen  523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAK----LEQIQEQYAELELELEI  598 (698)
T ss_pred             HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            999999999999999888888888877766433       3444444333333222211    12234455667788888


Q ss_pred             HHHhhhhhhhhhHHHHHHhhhcc
Q 007114          501 LRQQISSLAMENKVMVVKLQQTK  523 (617)
Q Consensus       501 L~~Qissl~~eNk~L~~k~k~~~  523 (617)
                      ++.+.+-+=.|+..|..|+..+.
T Consensus       599 ~~~k~~rleEE~e~L~~kle~~k  621 (698)
T KOG0978|consen  599 EKFKRKRLEEELERLKRKLERLK  621 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888888888888988888543

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.15  E-value=4.2  Score=41.13  Aligned_cols=42  Identities=14%  Similarity=0.257  Sum_probs=19.9

Q ss_pred             HhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114          298 VLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSE  339 (617)
Q Consensus       298 ~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~  339 (617)
                      ++....-+..++.+++.+...+...-..|..++..+...|..
T Consensus        14 ~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~   55 (207)
T PF05010_consen   14 VQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQ   55 (207)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            333333334444555555544444444555555555555443

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=95.10  E-value=4  Score=43.57  Aligned_cols=124  Identities=18%  Similarity=0.188  Sum_probs=82.1

Q ss_pred             HHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcc---------------------h
Q 007114          222 LRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAEN---------------------S  280 (617)
Q Consensus       222 LrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAEN---------------------a  280 (617)
                      ++=.++|-++.-|||-.|.-.+.-=--|+.||++   +...+-+.-+.++..+..|+.                     +
T Consensus       104 i~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~---d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~  180 (305)
T PF14915_consen  104 IQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNS---DVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA  180 (305)
T ss_pred             HhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcc---hHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557899999999999988777633445555532   223333444444444444443                     4


Q ss_pred             HHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007114          281 AEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAE  348 (617)
Q Consensus       281 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~ae  348 (617)
                      +|.+++++..++.++..++--...-.-.-+.-+.|-+|+|+-|-.+++.|-=|..++..|-.++.+-+
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke  248 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE  248 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555444444445555566669999999999999999999999999988766

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.00  E-value=0.19  Score=57.39  Aligned_cols=34  Identities=35%  Similarity=0.362  Sum_probs=22.8

Q ss_pred             HHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHH
Q 007114          435 EEKLIILSEANAGLTEEISFLRDRLECLEASLHQ  468 (617)
Q Consensus       435 E~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~q  468 (617)
                      ..+...|-..|..|..|+.-|+.+...||.+|..
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667777777777777777777776653

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=94.93  E-value=12  Score=45.31  Aligned_cols=260  Identities=21%  Similarity=0.221  Sum_probs=152.1

Q ss_pred             HhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHh---hcchHHHHhhhHHHHHHhHHHHhhhccc
Q 007114          228 SLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFE---AENSAEVLKGISKELLGRLQIVLFNMNG  304 (617)
Q Consensus       228 SlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~E---AENa~EvL~g~skel~gkLq~~qf~L~a  304 (617)
                      -++.-.+|++.|.++|.--+++.   ...++-+..|-+.+..+---.++   ||--++.|+.+..-+..|+..++.||-=
T Consensus       274 im~qqa~Lqrel~raR~e~keaq---e~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEI  350 (1243)
T KOG0971|consen  274 IMEQQADLQRELKRARKEAKEAQ---EAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEI  350 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566788888888776444432   22233333344444333222222   2333445555555555555555554421


Q ss_pred             chhchhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hh
Q 007114          305 SVQREAGLRSKLD--------SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TS  372 (617)
Q Consensus       305 s~~REsel~sKLk--------slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----ls  372 (617)
                             |++..+        .--=|++.+|--|..||+.+.+-..-..+.--....|..-=-.++.|+++|+.    |+
T Consensus       351 -------LKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Ls  423 (1243)
T KOG0971|consen  351 -------LKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLS  423 (1243)
T ss_pred             -------HHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                   000000        00012336677788999988865544444433344444444446677777777    88


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHh----HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhh--
Q 007114          373 EKVESLERQLRESDIQLQHAVAYAEASLEKQNM----LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANA--  446 (617)
Q Consensus       373 EKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~----l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~--  446 (617)
                      .++..+|-++.+.+.|.-.|-. ++++.+++-.    +...|+-+|..|+||-.           +|.--.+|-|.|-  
T Consensus       424 r~~d~aEs~iadlkEQVDAAlG-AE~MV~qLtdknlnlEekVklLeetv~dlEa-----------lee~~EQL~Esn~el  491 (1243)
T KOG0971|consen  424 RELDQAESTIADLKEQVDAALG-AEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-----------LEEMNEQLQESNREL  491 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            8999999999999999876654 5677766432    23334445555554432           4445556777775  


Q ss_pred             --hhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114          447 --GLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ  520 (617)
Q Consensus       447 --eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k  520 (617)
                        .|-+||.-+++-...|++....+    ..|+-|.....+-|.+||.+|-       .||.-+++.|--..+..+
T Consensus       492 e~DLreEld~~~g~~kel~~r~~aa----qet~yDrdqTI~KfRelva~Lq-------dqlqe~~dq~~Sseees~  556 (1243)
T KOG0971|consen  492 ELDLREELDMAKGARKELQKRVEAA----QETVYDRDQTIKKFRELVAHLQ-------DQLQELTDQQESSEEESQ  556 (1243)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHhc
Confidence              46788899988777777776655    4688888888888999998865       445455544444444444

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.63  E-value=16  Score=45.32  Aligned_cols=236  Identities=21%  Similarity=0.214  Sum_probs=125.4

Q ss_pred             hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhH----------HHHHHhHHHHhhhcc
Q 007114          234 DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGIS----------KELLGRLQIVLFNMN  303 (617)
Q Consensus       234 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s----------kel~gkLq~~qf~L~  303 (617)
                      +++..|.++.+....+...+..+....+.+|+.-.+..-.+-.+--+.....+-+          ..+..++..+|+...
T Consensus       519 ~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~  598 (1317)
T KOG0612|consen  519 QLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKS  598 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHH
Confidence            4555556666666666666777777788888766655533332222222222222          245555555555544


Q ss_pred             cchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHH---
Q 007114          304 GSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVE---  376 (617)
Q Consensus       304 as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~---  376 (617)
                      ..+.-+..+++-++..-.+.-..--++.+++..|.              .|.+||..++.++.-+++    ..++.+   
T Consensus       599 ~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~--------------sL~~~~~~~~~~l~k~~el~r~~~e~~~~~e  664 (1317)
T KOG0612|consen  599 KLSKENKKLRSELEKERRQRTEISEIIAELKEEIS--------------SLEETLKAGKKELLKVEELKRENQERISDSE  664 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44443333333332222222222222333333332              233333333332222222    111222   


Q ss_pred             ------HHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHh------
Q 007114          377 ------SLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEA------  444 (617)
Q Consensus       377 ------sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEt------  444 (617)
                            .+|.+++..+-++++..+....-  ++-.-...+..|++-+.+=|+..-+|+..+--.+++|-.|.-.      
T Consensus       665 k~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~  742 (1317)
T KOG0612|consen  665 KEALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQE  742 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence                  34455566666666665554443  2222244577777777777888888998888899999888643      


Q ss_pred             -hhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhH
Q 007114          445 -NAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTK  485 (617)
Q Consensus       445 -N~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK  485 (617)
                       +-+|.....-+.+.+-.|+..|.|...+|-+.-+++..+.-
T Consensus       743 ~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLssq~~  784 (1317)
T KOG0612|consen  743 KLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELKSQEQ  784 (1317)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHH
Confidence             33333444444456777888888888888777777665443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.57  E-value=3.7  Score=37.93  Aligned_cols=76  Identities=20%  Similarity=0.253  Sum_probs=59.9

Q ss_pred             hhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114          445 NAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ  520 (617)
Q Consensus       445 N~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k  520 (617)
                      +.+..++|..+|..+..+...+.++.....+....+.....-...=-..|-.|..-+...|..|..-|++|-..+.
T Consensus        54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   54 HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445677788888888888888877777777777777777777777788888888888888999999999877664

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.37  E-value=12  Score=42.84  Aligned_cols=299  Identities=19%  Similarity=0.234  Sum_probs=158.8

Q ss_pred             Hhhhhhhh---HHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhh--------HHHHHHHHHHHHHHHHHhh
Q 007114          105 LLSGLLDS---ELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLD--------SEDSLQQSRDQILEIKKQS  173 (617)
Q Consensus       105 lL~gilDS---Ev~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~--------~~~sLkQ~~e~i~eik~qs  173 (617)
                      .++-|.||   |=+||-.+=|-|-..|..+|..=....-|.-=.-.+++..+.        ++..|-.....|.++-+.-
T Consensus        29 ~as~ir~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~r  108 (546)
T KOG0977|consen   29 AASPIRDSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARER  108 (546)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHH
Confidence            34555555   666788888999999999987644333332222223333322        4556666777777777777


Q ss_pred             HHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhh
Q 007114          174 AKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRL  253 (617)
Q Consensus       174 a~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL  253 (617)
                      ++|+.-|..+                               .++--..-.++++..-.-..-+.++.+....--++..++
T Consensus       109 a~~e~ei~kl-------------------------------~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~  157 (546)
T KOG0977|consen  109 AKLEIEITKL-------------------------------REELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI  157 (546)
T ss_pred             HHHHHHHHHh-------------------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH
Confidence            7777777322                               133334456677776666666666666666666777777


Q ss_pred             hhhhHHHHhHHHHHHHHHH---HHHhhcchHHHHhhh-HHHH------HHhHHH----Hhhhcccc----------hhch
Q 007114          254 GSFEQELLYTEEEAMDACE---RLFEAENSAEVLKGI-SKEL------LGRLQI----VLFNMNGS----------VQRE  309 (617)
Q Consensus       254 ~~~eqe~~~lEE~~~~~~e---r~~EAENa~EvL~g~-skel------~gkLq~----~qf~L~as----------~~RE  309 (617)
                      +++.-....||+....+..   |+...   +.-++.. =+++      +.+.|.    +.|-...-          ..|+
T Consensus       158 ~~~krr~~~le~e~~~Lk~en~rl~~~---l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd  234 (546)
T KOG0977|consen  158 NTLKRRIKALEDELKRLKAENSRLREE---LARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRD  234 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            7777777888877665532   22211   1111110 0111      111111    11111110          0111


Q ss_pred             h------hHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-
Q 007114          310 A------GLRSKLDSLVKQVE------------VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-  370 (617)
Q Consensus       310 s------el~sKLkslEeqL~------------~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-  370 (617)
                      .      ..+.+|..+=..++            ++|..+   +.+|.++...+.-+-...-...|-=......++.|++ 
T Consensus       235 ~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y---~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~k  311 (546)
T KOG0977|consen  235 TTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWY---KRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAK  311 (546)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhh
Confidence            1      11111211111111            233222   2233333333322222222222222222333333333 


Q ss_pred             ---hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhh
Q 007114          371 ---TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAG  447 (617)
Q Consensus       371 ---lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~e  447 (617)
                         +..+-..|++++.+++.|+..-          +..+...|.+-+.-|..+.+.+-..-       .+.-.|=++++-
T Consensus       312 lselE~~n~~L~~~I~dL~~ql~e~----------~r~~e~~L~~kd~~i~~mReec~~l~-------~Elq~LlD~ki~  374 (546)
T KOG0977|consen  312 LSELESRNSALEKRIEDLEYQLDED----------QRSFEQALNDKDAEIAKMREECQQLS-------VELQKLLDTKIS  374 (546)
T ss_pred             hccccccChhHHHHHHHHHhhhhhh----------hhhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHhhchHhH
Confidence               3334557888888888887543          33444568888888888888666554       688889999999


Q ss_pred             hHHHHHhhHh
Q 007114          448 LTEEISFLRD  457 (617)
Q Consensus       448 LneEL~fLks  457 (617)
                      |.-||+.||-
T Consensus       375 Ld~EI~~YRk  384 (546)
T KOG0977|consen  375 LDAEIAAYRK  384 (546)
T ss_pred             HHhHHHHHHH
Confidence            9999999985

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=94.35  E-value=12  Score=42.66  Aligned_cols=66  Identities=18%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             HHHhHHHhHhhhHHHHHHHHHhhhhhhh---------hhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114          402 KQNMLYSTVKDMENLIQDLKLKVSKADS---------RADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH  467 (617)
Q Consensus       402 eqn~l~S~IsdMEnvIEeLK~KvskAES---------RAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~  467 (617)
                      ....+...+..++.=+.++..++..+.+         +-+.++.++..+...--.+.+++..++.++..+++.+.
T Consensus       392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  466 (650)
T TIGR03185       392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD  466 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555566666666666666665432         22333333333333333444444444445555555553

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=94.29  E-value=11  Score=42.03  Aligned_cols=192  Identities=19%  Similarity=0.255  Sum_probs=101.7

Q ss_pred             chhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH-hhH-HHhh-----hhhhhhh----hhH
Q 007114          305 SVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAE-TNI-ELNE-----DLKGSRA----TSE  373 (617)
Q Consensus       305 s~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~Lte-TN~-eL~~-----el~~Lk~----lsE  373 (617)
                      .-++-.++...++.+--.++..+....+.|..   |---.+..+..+..|-+ +.. .++.     |+++|+.    +++
T Consensus       212 ~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~k---A~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~e  288 (511)
T PF09787_consen  212 YLRESGELQEQLELLKAEGESEEAELQQYKQK---AQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQE  288 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHH
Confidence            33344455444443333333333333333211   33444555555555555 222 1221     3555554    788


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHH
Q 007114          374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEIS  453 (617)
Q Consensus       374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~  453 (617)
                      -+..|+.|+.....+++...+....   +...+...+.+++..+..+..+           |++|..+...=--+.+|+.
T Consensus       289 e~~~l~~Qi~~l~~e~~d~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----------e~e~~l~~~el~~~~ee~~  354 (511)
T PF09787_consen  289 EIQLLERQIEQLRAELQDLEAQLEG---EQESFREQPQELSQQLEPELTT-----------EAELRLYYQELYHYREELS  354 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHhch-----------HHHHHHHHHHHHHHHHHHH
Confidence            8999999999988888888776655   3345666677777777776665           3444444333333333443


Q ss_pred             hhHh----HHHHHHHHHH---HHHHH--hhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114          454 FLRD----RLECLEASLH---QAEET--KLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ  520 (617)
Q Consensus       454 fLks----r~~~LE~~L~---qa~~~--K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k  520 (617)
                      ..++    |+..-+..+.   .+-.+  +.+.-.|+..+-+..++.+.|=       |.++-+|+.+++-|.-.+.
T Consensus       355 ~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~K-------Q~~lE~l~~ek~al~lqlE  423 (511)
T PF09787_consen  355 RQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQK-------QTQLESLGSEKNALRLQLE  423 (511)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHH-------HHHHHHHHhhhhhccccHH
Confidence            3333    3333333222   22222  3456678777777766555432       5556666777776654443

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=94.26  E-value=8.6  Score=40.66  Aligned_cols=191  Identities=18%  Similarity=0.187  Sum_probs=110.2

Q ss_pred             HHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH
Q 007114          281 AEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE----VKESVIASLRENLSEAQARADGAEVRCKSLAE  356 (617)
Q Consensus       281 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~----~len~~e~LKe~i~~AEsra~~aeskc~~Lte  356 (617)
                      ++-|.+.++.+..+++.--..=.....--..|+.||+++-+|.+    -++.++...--.+--++.|.+++......-.+
T Consensus       109 ~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~  188 (309)
T PF09728_consen  109 SEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKE  188 (309)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            44455555555555554333323333444578899998888877    44444444333444444444444444333333


Q ss_pred             hhHHHhh----hhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhh
Q 007114          357 TNIELNE----DLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRAD  432 (617)
Q Consensus       357 TN~eL~~----el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe  432 (617)
                      -...++.    +...+..+.+--..|..||.-|-..-..-..+.--+.+-...+..+|..|-.-|..|--.....-+|.+
T Consensus       189 k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e  268 (309)
T PF09728_consen  189 KAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE  268 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333    111222233333444455554443333332332333333444555566777777777666777777778


Q ss_pred             hHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114          433 SAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE  471 (617)
Q Consensus       433 ~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~  471 (617)
                      .+-.-...+.+.+..+.+++..++.+...||+--++++.
T Consensus       269 ~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~  307 (309)
T PF09728_consen  269 KSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQA  307 (309)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888899999999999999999999999999987766654

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF13514 AAA_27: AAA domain

Probab=94.21  E-value=17  Score=43.96  Aligned_cols=62  Identities=24%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             hHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 007114          448 LTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAME  511 (617)
Q Consensus       448 LneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~e  511 (617)
                      |..++..++.++..|+..+.++.......-..|..-..  .+-+..+..+++.+..+|..++++
T Consensus       894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~--~~~~a~l~~e~e~~~a~l~~~~~~  955 (1111)
T PF13514_consen  894 LEAELEELEEELEELEEELEELQEERAELEQELEALEG--DDDAAELEQEREEAEAELEELAEE  955 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555665555544443333333322111  122345667777777777776654

>PLN02939 transferase, transferring glycosyl groups

Probab=94.21  E-value=14  Score=44.89  Aligned_cols=202  Identities=25%  Similarity=0.290  Sum_probs=111.9

Q ss_pred             HHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhh
Q 007114          281 AEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD--------SLVKQVEVKESVIASLRENLSEAQA----RADGAE  348 (617)
Q Consensus       281 ~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk--------slEeqL~~len~~e~LKe~i~~AEs----ra~~ae  348 (617)
                      ++-++++-..++|++++++..|.     |.+-+.|+-        -+|+||+.+-+       .+..-..    -...-.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  225 (977)
T PLN02939        158 LEKILTEKEALQGKINILEMRLS-----ETDARIKLAAQEKIHVEILEEQLEKLRN-------ELLIRGATEGLCVHSLS  225 (977)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhh-----hhhhhhhhhhhccccchhhHHHHHHHhh-------hhhccccccccccccHH
Confidence            44455566678999999998876     445555553        45555553332       2221110    111124


Q ss_pred             HhhhhhHHhhHHHhhhhhhhhh-------hhHHH-------HHHHHHHHHhHHHHHHHHHhHHH-HHHHHHhHHHhHhhh
Q 007114          349 VRCKSLAETNIELNEDLKGSRA-------TSEKV-------ESLERQLRESDIQLQHAVAYAEA-SLEKQNMLYSTVKDM  413 (617)
Q Consensus       349 skc~~LteTN~eL~~el~~Lk~-------lsEKv-------~sLEkQLkEse~QL~~A~ASaea-~~eeqn~l~S~IsdM  413 (617)
                      -++..|.+-|+-|+..+.+||.       ..+.+       ..|+.-|++.+..+-.|.+-+-. .--+++.+..++   
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  302 (977)
T PLN02939        226 KELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKV---  302 (977)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHH---
Confidence            5677788888888888888887       23333       34555677777766433322211 111222333333   


Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHH
Q 007114          414 ENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQ  493 (617)
Q Consensus       414 EnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~Q  493 (617)
                          |.|+.-+.+|-.+++.|    +..-..|.       -|+.|+..||.+|..++..|.++-        .|.-|-++
T Consensus       303 ----~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  359 (977)
T PLN02939        303 ----ENLQDLLDRATNQVEKA----ALVLDQNQ-------DLRDKVDKLEASLKEANVSKFSSY--------KVELLQQK  359 (977)
T ss_pred             ----HHHHHHHHHHHHHHHHH----HHHhccch-------HHHHHHHHHHHHHHHhhHhhhhHH--------HHHHHHHH
Confidence                44444444444333333    23333343       357899999999999999998654        34444466


Q ss_pred             HHHHHHHH-------HHhhhhhhhhhHHHHHHhh
Q 007114          494 MAVERERL-------RQQISSLAMENKVMVVKLQ  520 (617)
Q Consensus       494 La~ErErL-------~~Qissl~~eNk~L~~k~k  520 (617)
                      +...++||       |.||.....+=..+..+++
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (977)
T PLN02939        360 LKLLEERLQASDHEIHSYIQLYQESIKEFQDTLS  393 (977)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666665       4555555555555555544

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.05  E-value=21  Score=44.42  Aligned_cols=125  Identities=14%  Similarity=0.114  Sum_probs=62.3

Q ss_pred             cHHHHHHHHHHHHHHhhhhhhhHHHhHHHHH---HHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHH
Q 007114          214 TAEQQRHFLRMLEKSLAREMDLEKKLTESRQ---VEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKE  290 (617)
Q Consensus       214 t~eQqR~iLrMLEkSlA~e~dLEkkL~es~~---~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~ske  290 (617)
                      |++|=-+.---+-.++|+=-+.+.=|+..+.   .-+.|...-.........+...+++|-+-+-+|+-|-..-++..+.
T Consensus      1509 tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1509 TPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred             CHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555444444455555665566666655443   2333433333344444445555566666666666555544444444


Q ss_pred             HHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007114          291 LLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLS  338 (617)
Q Consensus       291 l~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~  338 (617)
                      ...-++-+|..|--...+=.-...++.++-+||.+|+...+.||.++.
T Consensus      1589 a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1589 ADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433333333333222211122233444666666677777777776655

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.79  E-value=10  Score=39.85  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114          325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA  370 (617)
Q Consensus       325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~  370 (617)
                      .|.+-...+| ...+.++|+.==+=+.+++.+....|.+.+..|+.
T Consensus       119 ~m~~q~~~vK-~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~  163 (325)
T PF08317_consen  119 LMDNQFQLVK-TYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQE  163 (325)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555444 34677888888888888888888888887777777

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=93.66  E-value=23  Score=43.50  Aligned_cols=50  Identities=26%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhh
Q 007114          406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFL  455 (617)
Q Consensus       406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fL  455 (617)
                      +...+......|+.++..+..++...++++.+...|...--.+..++.-.
T Consensus       626 ~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  675 (1201)
T PF12128_consen  626 LEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA  675 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555666777777777777777777777766665555444444433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=93.61  E-value=23  Score=43.39  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=28.0

Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh--hhHHHHH
Q 007114          478 KDIGIRTKVITNLVMQMAVERERLRQQISSLAM--ENKVMVV  517 (617)
Q Consensus       478 kdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~--eNk~L~~  517 (617)
                      +-.+-+--.+..++--|-.|+.-|.+||++|+.  .|.++-+
T Consensus       526 e~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LE  567 (1195)
T KOG4643|consen  526 ELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLE  567 (1195)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            334444556677777778888889999999988  6655543

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=93.58  E-value=15  Score=41.18  Aligned_cols=213  Identities=23%  Similarity=0.261  Sum_probs=113.8

Q ss_pred             hccHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHH
Q 007114          212 LQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKEL  291 (617)
Q Consensus       212 mqt~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel  291 (617)
                      .+..+++.+|+.  ++. ..-..+++.|..+....+.|+..+-.           +.++=.++..+-.....|++.++..
T Consensus       196 ~eAeee~~~~~~--~~~-~~~~~~~~~leeae~~l~~L~~e~~~-----------~k~Le~kL~~a~~~l~~Lq~El~~~  261 (522)
T PF05701_consen  196 IEAEEERIEIAA--ERE-QDAEEWEKELEEAEEELEELKEELEA-----------AKDLESKLAEASAELESLQAELEAA  261 (522)
T ss_pred             HHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555666653  332 34446788888888888888777633           3333334445555556666665555


Q ss_pred             HH-hHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh
Q 007114          292 LG-RLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA  370 (617)
Q Consensus       292 ~g-kLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~  370 (617)
                      .. ++....    ........+...|.++...|..+...+...++.+..              |..+.--|+.+|...|.
T Consensus       262 ~~~~l~~~~----~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~--------------L~~~vesL~~ELe~~K~  323 (522)
T PF05701_consen  262 KESKLEEEA----EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS--------------LRASVESLRSELEKEKE  323 (522)
T ss_pred             HHHHHhhhH----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence            44 322222    233344444555555555555444444433333332              22222223333322222


Q ss_pred             -----------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHh
Q 007114          371 -----------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLI  439 (617)
Q Consensus       371 -----------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~  439 (617)
                                 ..-.|.+|+.+|......|..+.+.....+       ..+.+|-..+..+..-.       +.|-..-.
T Consensus       324 el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k-------~~~~~l~~~Lqql~~Ea-------e~Ak~ea~  389 (522)
T PF05701_consen  324 ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAK-------EAMSELPKALQQLSSEA-------EEAKKEAE  389 (522)
T ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchh-------hhHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence                       444566666666666666665555443322       23455555555544433       34444555


Q ss_pred             hHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114          440 ILSEANAGLTEEISFLRDRLECLEASLHQAE  470 (617)
Q Consensus       440 ~LtEtN~eLneEL~fLksr~~~LE~~L~qa~  470 (617)
                      .......++..|+...|..+...|.+|..+.
T Consensus       390 ~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~  420 (522)
T PF05701_consen  390 EAKEEVEKAKEEAEQTKAAIKTAEERLEAAL  420 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556667788888888888888888887443

Several sequences in this family are described as being myosin heavy chain-like.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.58  E-value=5.7  Score=46.44  Aligned_cols=135  Identities=21%  Similarity=0.262  Sum_probs=104.7

Q ss_pred             hhhhhhccHHHHHHHHH--HHH-HHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHH
Q 007114          207 NAKIKLQTAEQQRHFLR--MLE-KSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEV  283 (617)
Q Consensus       207 ~~~~~mqt~eQqR~iLr--MLE-kSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~Ev  283 (617)
                      +..-..|.--|--.+||  -++ .-+|+ -.+++...-....-+.--.+|....+++..+.+.++.+-+|+=+|..--+.
T Consensus       533 ~~~E~l~lL~~a~~vlreeYi~~~~~ar-~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~  611 (717)
T PF10168_consen  533 SPQECLELLSQATKVLREEYIEKQDLAR-EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEK  611 (717)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555556666  223 33343 357777777777777777789999999999999999999999999999999


Q ss_pred             HhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007114          284 LKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARAD  345 (617)
Q Consensus       284 L~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~  345 (617)
                      |+--.+.++.+++   ..+.....-|.+.+..|+.+..+|+.|.+-++.+|.++...+.+.+
T Consensus       612 L~~R~~~vl~~l~---~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~  670 (717)
T PF10168_consen  612 LMKRVDRVLQLLN---SQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE  670 (717)
T ss_pred             HHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9888888877774   4566677789999999999999999999999999988876555444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK09039 hypothetical protein; Validated

Probab=93.30  E-value=6.2  Score=42.07  Aligned_cols=12  Identities=17%  Similarity=0.312  Sum_probs=7.3

Q ss_pred             hHHHHHhhHhHH
Q 007114          448 LTEEISFLRDRL  459 (617)
Q Consensus       448 LneEL~fLksr~  459 (617)
                      -..||.-||+.+
T Consensus       188 ~~~~l~~~~~~~  199 (343)
T PRK09039        188 RVQELNRYRSEF  199 (343)
T ss_pred             HHHHHHHhHHHH
Confidence            355667777654

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.23  E-value=17  Score=40.71  Aligned_cols=169  Identities=24%  Similarity=0.248  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh------------------------
Q 007114          315 KLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA------------------------  370 (617)
Q Consensus       315 KLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~------------------------  370 (617)
                      +++|+=++-..++.-+..++.++.+-..++.-.+.+.++|.+-|-||+..+..+.-                        
T Consensus       139 q~eslle~~~q~da~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l  218 (446)
T KOG4438|consen  139 QLESLLELRKQLDAKYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKIL  218 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH


Q ss_pred             --hhHHHHHHHHHHH------------------HhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhh
Q 007114          371 --TSEKVESLERQLR------------------ESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSR  430 (617)
Q Consensus       371 --lsEKv~sLEkQLk------------------Ese~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESR  430 (617)
                        +.--|-+|++-..                  +....++.-+......++++..+..++..|..++.|++.-.-++.+-
T Consensus       219 ~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~  298 (446)
T KOG4438|consen  219 NALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSD  298 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh


Q ss_pred             h---hhHHHHHhhHHHhhhhhHHHHHhhHh------HHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 007114          431 A---DSAEEKLIILSEANAGLTEEISFLRD------RLECLEASLHQAEETKLATAKDIGIRT  484 (617)
Q Consensus       431 A---e~AE~kc~~LtEtN~eLneEL~fLks------r~~~LE~~L~qa~~~K~stakdI~~~t  484 (617)
                      -   ++.|.+...|.+ |++|+.-+-...+      ..+.+-++|.-+..+|.++..|...++
T Consensus       299 ~~e~d~~Et~~v~lke-~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~  360 (446)
T KOG4438|consen  299 GVEYDSLETKVVELKE-ILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRK  360 (446)
T ss_pred             hhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=92.99  E-value=11  Score=37.70  Aligned_cols=132  Identities=19%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             ccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHH
Q 007114          303 NGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSE---AQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKV  375 (617)
Q Consensus       303 ~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~---AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv  375 (617)
                      +|-..+=.+|+..+..+...+.++.+.|.-||.--.+   |=.+.+++++...+|.   ..-++++..|+.    ..++.
T Consensus         8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll---~~h~eEvr~Lr~~LR~~q~~~   84 (194)
T PF15619_consen    8 SARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLL---QRHNEEVRVLRERLRKSQEQE   84 (194)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            3444444566777777777777777777777766554   5566677777777664   334566666666    67788


Q ss_pred             HHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH
Q 007114          376 ESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE  443 (617)
Q Consensus       376 ~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE  443 (617)
                      ..+++.+++.+.++..........+.     ++.-+++.. .++|..+++.++.+++.++.+...|..
T Consensus        85 r~~~~klk~~~~el~k~~~~l~~L~~-----L~~dknL~e-ReeL~~kL~~~~~~l~~~~~ki~~Lek  146 (194)
T PF15619_consen   85 RELERKLKDKDEELLKTKDELKHLKK-----LSEDKNLAE-REELQRKLSQLEQKLQEKEKKIQELEK  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888876666554331     233445555 577888888888877777777666543

>PRK09039 hypothetical protein; Validated

Probab=92.73  E-value=16  Score=39.06  Aligned_cols=61  Identities=25%  Similarity=0.285  Sum_probs=42.9

Q ss_pred             hhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 007114          446 AGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQIS  506 (617)
Q Consensus       446 ~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qis  506 (617)
                      .-|+.+|..||..+..||..|..++......-..|..-..-|.....+-.-|-+++.+++.
T Consensus       140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~  200 (343)
T PRK09039        140 ELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFF  200 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3578899999999999999998777776555555555555555555555556677777663

>TIGR00634 recN DNA repair protein RecN

Probab=92.73  E-value=20  Score=40.25  Aligned_cols=46  Identities=13%  Similarity=0.172  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhh---cccchhchhh
Q 007114          266 EAMDACERLFEAENSAEVLKGISKELLGRLQIVLFN---MNGSVQREAG  311 (617)
Q Consensus       266 ~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~---L~as~~REse  311 (617)
                      ....+|.+|-++....+-+....+....+++..+|.   |.....+++|
T Consensus       162 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E  210 (563)
T TIGR00634       162 AYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGE  210 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCc
Confidence            345667888888888888888878888888887776   4444444443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=92.69  E-value=26  Score=41.43  Aligned_cols=337  Identities=17%  Similarity=0.233  Sum_probs=179.3

Q ss_pred             HHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 007114          104 DLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSAL  183 (617)
Q Consensus       104 DlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~  183 (617)
                      .=||--|.-++.|-.+++    ......||+   |--+-+.|.+-.+|+.-++.--...++.+.++-.   +.+|.|-+|
T Consensus       130 E~lSlKLee~i~en~dL~----k~nnaTR~l---CNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~---niekMi~aF  199 (786)
T PF05483_consen  130 EKLSLKLEEEIQENKDLR----KENNATRHL---CNLLKETCQRSAEKMKKYEYEREETRQLYMDLNE---NIEKMIAAF  199 (786)
T ss_pred             hHHhHHHHHHHhhHHHHH----HhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHH
Confidence            345555555555544433    345556775   8888889999999999888776666666655432   233333332


Q ss_pred             hccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHH--HHHHHHHhhhhh-hhHH-------HhHHHHHHHHHHHhhh
Q 007114          184 DREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHF--LRMLEKSLAREM-DLEK-------KLTESRQVEEALKFRL  253 (617)
Q Consensus       184 ~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~i--LrMLEkSlA~e~-dLEk-------kL~es~~~eeeLk~kL  253 (617)
                      ..   -.. .+    ++       .+.-||- .=++..  +.=||.-.-.|+ |-|+       ++.+-.....+|...|
T Consensus       200 Ee---LR~-qA----En-------~r~EM~f-KlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l  263 (786)
T PF05483_consen  200 EE---LRV-QA----EN-------DRQEMHF-KLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLL  263 (786)
T ss_pred             HH---HHH-HH----Hh-------HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence            10   000 00    11       1111210 000111  122333333332 2233       3333334556677777


Q ss_pred             hhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhh-------hcccchhchhhHHHHHH-HHHHHHH-
Q 007114          254 GSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLF-------NMNGSVQREAGLRSKLD-SLVKQVE-  324 (617)
Q Consensus       254 ~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf-------~L~as~~REsel~sKLk-slEeqL~-  324 (617)
                      .-+..-...|||...--.+-+-++----+.|.-.+..+---||....       +|......=-.+...-+ .+|++=+ 
T Consensus       264 ~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~  343 (786)
T PF05483_consen  264 QESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKA  343 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            77777777788877777666665544444444444433333332221       11111110000000000 2222111 


Q ss_pred             ---------HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-------------------------
Q 007114          325 ---------VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-------------------------  370 (617)
Q Consensus       325 ---------~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-------------------------  370 (617)
                               +|+..+-+|++-+.--.-|+...+...+.|+   ++|..+-.+|..                         
T Consensus       344 k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~~ed~lk~l~---~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkl  420 (786)
T PF05483_consen  344 KAQHSFVVTELQTTICNLKELLTTEQQRLKKNEDQLKILT---MELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKL  420 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence                     7777788888777766666666666555442   223222222221                         


Q ss_pred             --------------------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHh-------------------------
Q 007114          371 --------------------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNM-------------------------  405 (617)
Q Consensus       371 --------------------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~-------------------------  405 (617)
                                          +...+...|+.+.+.+.||..+..+-..+-.+...                         
T Consensus       421 l~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslE  500 (786)
T PF05483_consen  421 LDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLE  500 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                44456667777777777777666654433333222                         


Q ss_pred             ---HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh----HHHHHHHHHHHH
Q 007114          406 ---LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD----RLECLEASLHQA  469 (617)
Q Consensus       406 ---l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks----r~~~LE~~L~qa  469 (617)
                         +.-+.++|-.=+..+++.+.....+++..-....-|-++|..|..||.++|-    +-..++.+|..-
T Consensus       501 kk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ks  571 (786)
T PF05483_consen  501 KKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKS  571 (786)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence               2222445555556667777777778888888888999999999999999987    455677777643

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=92.61  E-value=27  Score=41.41  Aligned_cols=26  Identities=35%  Similarity=0.558  Sum_probs=16.2

Q ss_pred             hhhhhHHHhHHHHHHHHHHHHhhhhh
Q 007114          108 GLLDSELRELENFITTLEADFVKAHE  133 (617)
Q Consensus       108 gilDSEv~Ele~~~~tlq~~I~~~~~  133 (617)
                      .+.-.+.+++...+..++..+.+-..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~L~~  295 (908)
T COG0419         270 KIREEELRELERLLEELEEKIERLEE  295 (908)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45556667777777766666655444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=92.56  E-value=25  Score=40.82  Aligned_cols=84  Identities=25%  Similarity=0.318  Sum_probs=46.5

Q ss_pred             HHHHHhhHHHhhhhhHHHHHhhHhHH--HHHHH-HH-HHHHHHhhhhhHhhhhhh---HHHHHHHHHHHHHHHHHHHhhh
Q 007114          434 AEEKLIILSEANAGLTEEISFLRDRL--ECLEA-SL-HQAEETKLATAKDIGIRT---KVITNLVMQMAVERERLRQQIS  506 (617)
Q Consensus       434 AE~kc~~LtEtN~eLneEL~fLksr~--~~LE~-~L-~qa~~~K~stakdI~~~t---K~i~dLv~QLa~ErErL~~Qis  506 (617)
                      +......++..|-+|...|+.+..-.  ..++. .. ..+.....+..+|+..+-   .++...+.++-.||.||..|+-
T Consensus       291 ~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~  370 (617)
T PF15070_consen  291 AQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLE  370 (617)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34455566666666666666543311  11110 00 022333445556665553   4578889999999999999986


Q ss_pred             hhhhhhHHHHH
Q 007114          507 SLAMENKVMVV  517 (617)
Q Consensus       507 sl~~eNk~L~~  517 (617)
                      ..-....-|..
T Consensus       371 eqk~~~q~L~h  381 (617)
T PF15070_consen  371 EQKVQCQHLAH  381 (617)
T ss_pred             HHHHHHHHhhh
Confidence            54333333333

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=92.54  E-value=27  Score=41.21  Aligned_cols=66  Identities=18%  Similarity=0.139  Sum_probs=42.9

Q ss_pred             HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHh
Q 007114          282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAET  357 (617)
Q Consensus       282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteT  357 (617)
                      +-+.|-.+.++..+...+++.++--.+|.+++.          +++.-+.+++.-+.++.+++....-+|+.....
T Consensus       115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~----------e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~  180 (716)
T KOG4593|consen  115 EALKGQEEKLQEQLERNRNQCQANLKKELELLR----------EKEDKLAELGTLRNKLDSSLSELQWEVMLQEMR  180 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667788888888888888888887777766654          334444444444555555555555666655443

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.49  E-value=12  Score=42.13  Aligned_cols=116  Identities=18%  Similarity=0.197  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114          318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE  397 (617)
Q Consensus       318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae  397 (617)
                      .++.++.-|+.-+.+|-++-.-|+.|...--.++.+|                 ..++..||+|+|+.+..+..+.+.-+
T Consensus       219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqL-----------------vhR~h~LEEq~reqElraeE~l~Ee~  281 (502)
T KOG0982|consen  219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQL-----------------VHRYHMLEEQRREQELRAEESLSEEE  281 (502)
T ss_pred             hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHH-----------------HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            3444444555555555555555555555555555555                 67999999999999999999888777


Q ss_pred             HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114          398 ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL  466 (617)
Q Consensus       398 a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L  466 (617)
                      -++.+              |.-.+++..-.|  -++-+.+.-+|.+.|-+|-..++-||+-+..|..-.
T Consensus       282 rrhrE--------------il~k~eReasle--~Enlqmr~qqleeentelRs~~arlksl~dklaee~  334 (502)
T KOG0982|consen  282 RRHRE--------------ILIKKEREASLE--KENLQMRDQQLEEENTELRSLIARLKSLADKLAEED  334 (502)
T ss_pred             HHHHH--------------HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            77665              222233222222  244455666777777777777777777544444433

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=92.46  E-value=13  Score=42.65  Aligned_cols=49  Identities=16%  Similarity=0.157  Sum_probs=41.1

Q ss_pred             cchhhHH--HHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCC
Q 007114          141 LGKASIE--MEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNW  189 (617)
Q Consensus       141 ~g~~f~~--~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~  189 (617)
                      +.++|+.  ++.|...+.....-+.+|+.++|.+...=++.+..|+...+.
T Consensus       176 la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l  226 (754)
T TIGR01005       176 IAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL  226 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4466776  678888888999999999999999999999999999875443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK10698 phage shock protein PspA; Provisional

Probab=91.64  E-value=16  Score=36.79  Aligned_cols=150  Identities=15%  Similarity=0.151  Sum_probs=64.7

Q ss_pred             HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhh----
Q 007114          282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLD--------------SLVKQVEVKESVIASLRENLSEAQAR----  343 (617)
Q Consensus       282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLk--------------slEeqL~~len~~e~LKe~i~~AEsr----  343 (617)
                      -|++|..+.+++|.+-=+--|+   +=-.++.+-|.              .++.++...+..+.+...+...|=.+    
T Consensus         9 ~ii~a~in~~ldkaEDP~k~l~---q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~Ed   85 (222)
T PRK10698          9 DIVNANINALLEKAEDPQKLVR---LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKED   85 (222)
T ss_pred             HHHHhHHHHHHHhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            5788888888887763321111   11122222222              33444444444444444333333221    


Q ss_pred             -hhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHH--HHHHHHhHHHhHhh--hH
Q 007114          344 -ADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEA--SLEKQNMLYSTVKD--ME  414 (617)
Q Consensus       344 -a~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea--~~eeqn~l~S~Isd--ME  414 (617)
                       |..|-.+-+...+.-..|..++.....    +...+..|+.++.+...+...-+|-..+  .+.+.+...+.+..  -=
T Consensus        86 LAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~  165 (222)
T PRK10698         86 LARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAM  165 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHH
Confidence             111222222333444444444444444    4445555555555555442222222111  11122222222111  11


Q ss_pred             HHHHHHHHhhhhhhhhhhhH
Q 007114          415 NLIQDLKLKVSKADSRADSA  434 (617)
Q Consensus       415 nvIEeLK~KvskAESRAe~A  434 (617)
                      .-.+.+.+||...|.+|+..
T Consensus       166 ~~f~rmE~ki~~~Ea~aea~  185 (222)
T PRK10698        166 ARFESFERRIDQMEAEAESH  185 (222)
T ss_pred             HHHHHHHHHHHHHHHHHhHh
Confidence            23455777888888777654

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=91.36  E-value=1.6  Score=41.74  Aligned_cols=72  Identities=25%  Similarity=0.285  Sum_probs=65.6

Q ss_pred             HHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHH---HHHHHHHHHHhhhhhhhhhHHHHHHhhhc
Q 007114          451 EISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQ---MAVERERLRQQISSLAMENKVMVVKLQQT  522 (617)
Q Consensus       451 EL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~Q---La~ErErL~~Qissl~~eNk~L~~k~k~~  522 (617)
                      +-++|++++.+||+.|...+..+.....|-...++.|..|-.+   ++.+|.+|+..+.++.+++..|...|+.-
T Consensus        18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~   92 (140)
T PF10473_consen   18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK   92 (140)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999888766   57799999999999999999999999854

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=91.33  E-value=41  Score=40.76  Aligned_cols=331  Identities=21%  Similarity=0.270  Sum_probs=164.0

Q ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCCCCCCCCCCCcccccccchhhhhhhccHHHHHHHHHHHH
Q 007114          147 EMEEKLLDSEDSLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLE  226 (617)
Q Consensus       147 ~~~~KL~~~~~sLkQ~~e~i~eik~qsa~fqr~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mqt~eQqR~iLrMLE  226 (617)
                      .+|+-|..-+..+.-+|-...+.-+|..++|-||.++..  . ......      .+.+.++            =|.-||
T Consensus        96 llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~--d-~ke~et------elE~~~s------------rlh~le  154 (1265)
T KOG0976|consen   96 LLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQD--D-KKENEI------EIENLNS------------RLHKLE  154 (1265)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHH------HHHhhHH------------HHHHHH
Confidence            345555555555555666666677788888888876631  0 000000      0011111            133333


Q ss_pred             HHhhhhh--------hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhc-----------chHHHHhhh
Q 007114          227 KSLAREM--------DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAE-----------NSAEVLKGI  287 (617)
Q Consensus       227 kSlA~e~--------dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAE-----------Na~EvL~g~  287 (617)
                      +-|.-..        ||-.+-......+.++..++.-...++..+|+-.+..-+-+-+.+           |.-+||.-.
T Consensus       155 ~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev  234 (1265)
T KOG0976|consen  155 DELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEV  234 (1265)
T ss_pred             HHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3332111        344445555666777777777777778888777776655555444           333333211


Q ss_pred             HHHHHHhHHHH-------------hhhcccchh----chhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Q 007114          288 SKELLGRLQIV-------------LFNMNGSVQ----REAGLRSKLDSLVKQVEVKESVI-------ASLRENLSEAQAR  343 (617)
Q Consensus       288 skel~gkLq~~-------------qf~L~as~~----REsel~sKLkslEeqL~~len~~-------e~LKe~i~~AEsr  343 (617)
                       ..|-.++|.+             --+|.++..    .+++++.|-.-|...|-..+-.+       +.+|....+|--+
T Consensus       235 -~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gd  313 (1265)
T KOG0976|consen  235 -MQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGD  313 (1265)
T ss_pred             -HHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             1122222222             222222221    12222222222333332444444       4444444444444


Q ss_pred             hhhhhHhhhhhHHhhHHHhhhhhhhhh-----------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhh
Q 007114          344 ADGAEVRCKSLAETNIELNEDLKGSRA-----------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKD  412 (617)
Q Consensus       344 a~~aeskc~~LteTN~eL~~el~~Lk~-----------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~Isd  412 (617)
                      ..+|   -+-|...|++|+.++.-++-           +.+|.+.||++-.....-.+.-..--+.-.+++--|.+....
T Consensus       314 seqa---tkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~ae  390 (1265)
T KOG0976|consen  314 SEQA---TKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAE  390 (1265)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443   34566778888877765554           777888888775554433322222223333334445555555


Q ss_pred             hHHHHHHHHHhhhhhhhh----------hhhHHHHHhhHHH-------------------------hhhhhHHHHHhhHh
Q 007114          413 MENLIQDLKLKVSKADSR----------ADSAEEKLIILSE-------------------------ANAGLTEEISFLRD  457 (617)
Q Consensus       413 MEnvIEeLK~KvskAESR----------Ae~AE~kc~~LtE-------------------------tN~eLneEL~fLks  457 (617)
                      .+.-|++||+++...|--          .+.|+.|.-.|--                         +=.+-|+=+.|+++
T Consensus       391 rqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~  470 (1265)
T KOG0976|consen  391 RQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRA  470 (1265)
T ss_pred             HHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence            666666666666555432          2233333322211                         11223444566666


Q ss_pred             HHHHHHHHHH---HHHHHhhhh---hHhhhhhhHHHHHHHHHHHHHHHHHH
Q 007114          458 RLECLEASLH---QAEETKLAT---AKDIGIRTKVITNLVMQMAVERERLR  502 (617)
Q Consensus       458 r~~~LE~~L~---qa~~~K~st---akdI~~~tK~i~dLv~QLa~ErErL~  502 (617)
                      .+.+||++-+   +.+..|++-   +|-|..-+..|-..---+-.||++|-
T Consensus       471 l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA  521 (1265)
T KOG0976|consen  471 LMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELA  521 (1265)
T ss_pred             HhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6777776654   555555543   45566666666666666666776663

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=91.14  E-value=40  Score=40.26  Aligned_cols=102  Identities=25%  Similarity=0.272  Sum_probs=52.8

Q ss_pred             HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH
Q 007114          282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIEL  361 (617)
Q Consensus       282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL  361 (617)
                      +.-.+...++..+|+.++..-.-..-.=....++++.+.-||++++..+.+|+-++.-+......+++..+-..+.+-.|
T Consensus       585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~l  664 (769)
T PF05911_consen  585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESL  664 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555544333333333344455555555555555555665555555555555555555555555555


Q ss_pred             hhhhhh----hhhhhHHHHHHHHHHH
Q 007114          362 NEDLKG----SRATSEKVESLERQLR  383 (617)
Q Consensus       362 ~~el~~----Lk~lsEKv~sLEkQLk  383 (617)
                      ...+..    ++.+..|+++||.+|.
T Consensus       665 e~~~~~~e~E~~~l~~Ki~~Le~Ele  690 (769)
T PF05911_consen  665 ETRLKDLEAEAEELQSKISSLEEELE  690 (769)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            444432    2235666666666653

The function of this family is unknown.

>PRK11281 hypothetical protein; Provisional

Probab=91.07  E-value=48  Score=41.08  Aligned_cols=147  Identities=16%  Similarity=0.160  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhh---hhh-----hhHHHHHHHHHHHHhHHHH
Q 007114          318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKG---SRA-----TSEKVESLERQLRESDIQL  389 (617)
Q Consensus       318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~---Lk~-----lsEKv~sLEkQLkEse~QL  389 (617)
                      ..+++|.+..+....+...-.+|+++...+-.+   +.+.+.+|+.--..   |..     ++-....++-|..-.+..+
T Consensus       139 ~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~R---lqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l  215 (1113)
T PRK11281        139 NAQNDLAEYNSQLVSLQTQPERAQAALYANSQR---LQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL  215 (1113)
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH---HHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444455454444443   33334455432111   111     4445556666655555556


Q ss_pred             HHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhh-----hhhhhhhHHH-H----------HhhHHHhhhhhHHHHH
Q 007114          390 QHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSK-----ADSRADSAEE-K----------LIILSEANAGLTEEIS  453 (617)
Q Consensus       390 ~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kvsk-----AESRAe~AE~-k----------c~~LtEtN~eLneEL~  453 (617)
                      ..+..-.+-.+.+++-+...+...|.-|..|++.+..     +|.+++.|+. +          ...+.+.|.+|.++|.
T Consensus       216 ~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~  295 (1113)
T PRK11281        216 EGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLL  295 (1113)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence            6666666666667777777777777777777777665     3333333321 1          3346688999999999


Q ss_pred             hhHhHHHHHHHHHH
Q 007114          454 FLRDRLECLEASLH  467 (617)
Q Consensus       454 fLksr~~~LE~~L~  467 (617)
                      ..-.|++.|-.+-.
T Consensus       296 ~~t~~~~~l~~~~~  309 (1113)
T PRK11281        296 KATEKLNTLTQQNL  309 (1113)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888877765553

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=90.86  E-value=42  Score=40.02  Aligned_cols=148  Identities=22%  Similarity=0.260  Sum_probs=73.9

Q ss_pred             hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHH--------H
Q 007114          310 AGLRSKLDSLVKQVE----VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVE--------S  377 (617)
Q Consensus       310 sel~sKLkslEeqL~----~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~--------s  377 (617)
                      +|||.+|.-.|.++.    -|...|.+|-..+..||.|++..   .+++-+|--=|=..|..|+..-.|..        +
T Consensus       590 ~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel---~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~  666 (961)
T KOG4673|consen  590 EDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEEL---IQQVPETTRPLLRQIEALQETLSKAATAWEREERS  666 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            345555544555544    45556666655555555443322   22333455556667777777322322        2


Q ss_pred             HHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHh--HhhhHHHHHHHHHhhhhhhhhh-----hhHHHHHhhHHHhhhhhHH
Q 007114          378 LERQLRESDIQLQHAVAYAEASLEKQNMLYST--VKDMENLIQDLKLKVSKADSRA-----DSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       378 LEkQLkEse~QL~~A~ASaea~~eeqn~l~S~--IsdMEnvIEeLK~KvskAESRA-----e~AE~kc~~LtEtN~eLne  450 (617)
                      |=..|-+|+.++..++...  .-+.|+.|...  |..|+     ++..+.+||.-+     +.+--+...+-..|.-+.+
T Consensus       667 l~~rL~dSQtllr~~v~~e--qgekqElL~~~~~l~s~~-----~q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qe  739 (961)
T KOG4673|consen  667 LNERLSDSQTLLRINVLEE--QGEKQELLSLNFSLPSSP-----IQLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQE  739 (961)
T ss_pred             HHHhhhhHHHHHHHHHHHH--hhhHHHHHHHhcCCCcch-----hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            2233445555555555444  33444444333  33332     344455554321     1122233344455667777


Q ss_pred             HHHhhHhHHHHHHHHHH
Q 007114          451 EISFLRDRLECLEASLH  467 (617)
Q Consensus       451 EL~fLksr~~~LE~~L~  467 (617)
                      |+..|++|+..||...+
T Consensus       740 E~~~l~~r~~~le~e~r  756 (961)
T KOG4673|consen  740 EADTLEGRANQLEVEIR  756 (961)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777765443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=90.85  E-value=42  Score=40.06  Aligned_cols=32  Identities=16%  Similarity=0.275  Sum_probs=17.8

Q ss_pred             HHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhH
Q 007114          227 KSLAREMDLEKKLTESRQVEEALKFRLGSFEQ  258 (617)
Q Consensus       227 kSlA~e~dLEkkL~es~~~eeeLk~kL~~~eq  258 (617)
                      +++-.-++-.+.+...+.+.++++.-+++...
T Consensus       441 qsv~k~v~~q~~~s~i~~ILedI~~al~~~~~  472 (769)
T PF05911_consen  441 QSVLKLVLEQKEVSKISEILEDIEIALDSINN  472 (769)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Confidence            34444455555555555666666666655544

The function of this family is unknown.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=90.83  E-value=8.4  Score=39.15  Aligned_cols=40  Identities=23%  Similarity=0.342  Sum_probs=34.8

Q ss_pred             hhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 007114          476 TAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVM  515 (617)
Q Consensus       476 takdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L  515 (617)
                      ...+++.-..-++-|...|+.||++...|..++-.|...-
T Consensus       129 ~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W  168 (202)
T PF06818_consen  129 GEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTW  168 (202)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3557888888999999999999999999999998887764

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>PLN02939 transferase, transferring glycosyl groups

Probab=90.81  E-value=15  Score=44.71  Aligned_cols=13  Identities=23%  Similarity=0.371  Sum_probs=8.2

Q ss_pred             hHhHHHHHHHHHH
Q 007114          455 LRDRLECLEASLH  467 (617)
Q Consensus       455 Lksr~~~LE~~L~  467 (617)
                      +=.|++.|+.-|.
T Consensus       298 ~~~~~~~~~~~~~  310 (977)
T PLN02939        298 WWEKVENLQDLLD  310 (977)
T ss_pred             HHHHHHHHHHHHH
Confidence            4456777776665

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=90.58  E-value=33  Score=38.39  Aligned_cols=146  Identities=22%  Similarity=0.200  Sum_probs=72.5

Q ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHH
Q 007114          310 AGLRSKLDSLVKQVE-VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQ  388 (617)
Q Consensus       310 sel~sKLkslEeqL~-~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~Q  388 (617)
                      ..|.+||..++..++ .-+    +....+...-.|....+.....|.+....+..-+..++    +...+..+++-...-
T Consensus       158 ~sL~ekl~lld~al~~~~~----~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~----~~~e~~~~l~l~~~~  229 (511)
T PF09787_consen  158 RSLQEKLSLLDEALKREDG----NAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLR----ESGELQEQLELLKAE  229 (511)
T ss_pred             hhHHHHHHHHHHHHHhcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            556666665555555 111    11222233333444444455555555444433333333    344555666666666


Q ss_pred             HHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114          389 LQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL  466 (617)
Q Consensus       389 L~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L  466 (617)
                      ++++.+.-..|+.+   ..-.+.+=|..|..||.+...-..-...+-.++..|....--+.+|+..|+..+..|...+
T Consensus       230 ~~~~~~el~~Yk~k---A~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~  304 (511)
T PF09787_consen  230 GESEEAELQQYKQK---AQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAEL  304 (511)
T ss_pred             hHHHHHHHHHHHHH---HHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666643   3455778899999999966552221111112333344444444444444444443333333

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=90.36  E-value=26  Score=36.84  Aligned_cols=141  Identities=18%  Similarity=0.194  Sum_probs=80.8

Q ss_pred             hhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114          346 GAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV  424 (617)
Q Consensus       346 ~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kv  424 (617)
                      .....|..|+.+|-+|..+|....+ .-.||..|=.|   |+. ...|.+.-+...         =+.|+....+|.+-=
T Consensus        10 el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqq---y~~-~~~~i~~le~~~---------~~~l~~ak~eLqe~e   76 (258)
T PF15397_consen   10 ELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQ---YDI-YRTAIDILEYSN---------HKQLQQAKAELQEWE   76 (258)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHH---HHH-HHHHHHHHHccC---------hHHHHHHHHHHHHHH
Confidence            4456788899999999998888877 44466544222   222 233333332211         123344444444444


Q ss_pred             hhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh--------HHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHH
Q 007114          425 SKADSRADSAEEKLIILSEANAGLTEEISFLRD--------RLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAV  496 (617)
Q Consensus       425 skAESRAe~AE~kc~~LtEtN~eLneEL~fLks--------r~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~  496 (617)
                      .+++++...-+.+...|.---.+.++||+||..        |+-...+-.+++...|.+-..+++--...+.-....|..
T Consensus        77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~  156 (258)
T PF15397_consen   77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSR  156 (258)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444455555555555566788888877        555555556677777777777776665555554444444


Q ss_pred             HHH
Q 007114          497 ERE  499 (617)
Q Consensus       497 ErE  499 (617)
                      -.+
T Consensus       157 ~~q  159 (258)
T PF15397_consen  157 KIQ  159 (258)
T ss_pred             HHH
Confidence            433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=90.19  E-value=47  Score=39.51  Aligned_cols=48  Identities=25%  Similarity=0.234  Sum_probs=21.3

Q ss_pred             HHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHH
Q 007114          221 FLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAM  268 (617)
Q Consensus       221 iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~  268 (617)
                      +-..+++-..+-..+...+.+..+...++...+...+.+...+++...
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~  434 (908)
T COG0419         387 LEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIK  434 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444444333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=90.02  E-value=16  Score=33.82  Aligned_cols=60  Identities=30%  Similarity=0.302  Sum_probs=35.2

Q ss_pred             hhhhHHHHHhhHhHHHHHHHHHH----HHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 007114          445 NAGLTEEISFLRDRLECLEASLH----QAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSL  508 (617)
Q Consensus       445 N~eLneEL~fLksr~~~LE~~L~----qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl  508 (617)
                      .-.+..+++.|+..+......|.    ..+..|..--++|.--.+-|.||..|=..    ||.||-++
T Consensus        68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~l----Lh~QlE~l  131 (132)
T PF07926_consen   68 LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKL----LHDQLESL  131 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhc
Confidence            33444455555555555544444    33455666667777777777777766544    77777654

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=89.62  E-value=11  Score=37.63  Aligned_cols=104  Identities=22%  Similarity=0.327  Sum_probs=69.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Q 007114          415 NLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQM  494 (617)
Q Consensus       415 nvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QL  494 (617)
                      .+|..||+.+.....+.+..+.....+...|-.|.+-|.-++-.+..|++.|......|.+ -..+-.+-+..++=+..|
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~-L~~~k~rl~~~ek~l~~L  105 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS-LQNLKARLKELEKELKDL  105 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            3588888888888888888888999999999999999999999999999999877666663 222223333333333344


Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHh
Q 007114          495 AVERERLRQQISSLAMENKVMVVKL  519 (617)
Q Consensus       495 a~ErErL~~Qissl~~eNk~L~~k~  519 (617)
                      -.|-+-|..++..+-.+..-|-.++
T Consensus       106 k~e~evL~qr~~kle~ErdeL~~kf  130 (201)
T PF13851_consen  106 KWEHEVLEQRFEKLEQERDELYRKF  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444333

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.53  E-value=4.2  Score=40.87  Aligned_cols=77  Identities=17%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114          371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne  450 (617)
                      ..+++..||+|+.+...++.++..+....                 ..+++.++..++       .....|.+.|.+|++
T Consensus        91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~-----------------~~~l~~~~~~~~-------~~~~~L~~~n~~L~~  146 (206)
T PRK10884         91 LRTRVPDLENQVKTLTDKLNNIDNTWNQR-----------------TAEMQQKVAQSD-------SVINGLKEENQKLKN  146 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------------HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            67888999999999998888877554432                 334444444433       234448899999999


Q ss_pred             HHHhhHhHHHHHHHHHHHHHH
Q 007114          451 EISFLRDRLECLEASLHQAEE  471 (617)
Q Consensus       451 EL~fLksr~~~LE~~L~qa~~  471 (617)
                      +|..++.++..|+.++.....
T Consensus       147 ~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        147 QLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988876554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.36  E-value=4.9  Score=39.14  Aligned_cols=83  Identities=24%  Similarity=0.364  Sum_probs=50.8

Q ss_pred             HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHH
Q 007114          410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITN  489 (617)
Q Consensus       410 IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~d  489 (617)
                      +.....-|.+|+..+...+.+...-+........+|.-|+.|+..|.-.++.+|.++..++.+-.          .+|.-
T Consensus       111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~----------~Lv~R  180 (194)
T PF08614_consen  111 LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR----------ELVER  180 (194)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence            33333334444444444444444444577777888888888998888888888888887766543          45555


Q ss_pred             HHHHHHHHHHHHH
Q 007114          490 LVMQMAVERERLR  502 (617)
Q Consensus       490 Lv~QLa~ErErL~  502 (617)
                      ++..-+.|-++++
T Consensus       181 wm~~k~~eAe~mN  193 (194)
T PF08614_consen  181 WMQRKAQEAERMN  193 (194)
T ss_dssp             HHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhc
Confidence            6666666666553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=89.30  E-value=29  Score=37.75  Aligned_cols=18  Identities=11%  Similarity=0.228  Sum_probs=11.2

Q ss_pred             HhhhhhhHHHHHHHHHHH
Q 007114          478 KDIGIRTKVITNLVMQMA  495 (617)
Q Consensus       478 kdI~~~tK~i~dLv~QLa  495 (617)
                      .|.....+....++.++.
T Consensus       362 Re~~~~~~~Y~~l~~r~e  379 (498)
T TIGR03007       362 RDYEVNKSNYEQLLTRRE  379 (498)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455556667777776653

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=89.09  E-value=26  Score=34.95  Aligned_cols=117  Identities=16%  Similarity=0.210  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHH
Q 007114          318 SLVKQVEVKESVIASLRENLSEAQAR-----ADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQ  388 (617)
Q Consensus       318 slEeqL~~len~~e~LKe~i~~AEsr-----a~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~Q  388 (617)
                      .++.++...+..+.++......|=.+     |-.|-.+-....++-..|...+..++.    +..++..|+.++.+....
T Consensus        56 ~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k  135 (219)
T TIGR02977        56 ELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR  135 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555544444222     223333444455555556666655555    555666666666666555


Q ss_pred             HHHHHHhHHHHHHH----HHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhH
Q 007114          389 LQHAVAYAEASLEK----QNMLYSTVKDMENLIQDLKLKVSKADSRADSA  434 (617)
Q Consensus       389 L~~A~ASaea~~ee----qn~l~S~IsdMEnvIEeLK~KvskAESRAe~A  434 (617)
                      ...-+|-...-+.+    ..+.-....+--.-++.+++++..-|.+++..
T Consensus       136 ~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~  185 (219)
T TIGR02977       136 QKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESY  185 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            33222211111111    11111123333445566778888888777654

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.08  E-value=33  Score=36.24  Aligned_cols=187  Identities=18%  Similarity=0.233  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHH
Q 007114          314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHA  392 (617)
Q Consensus       314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A  392 (617)
                      +++..+.+.+..+++-+++|-.+|....++.+....++.++..-=-+|+.+|..++. ..++=..|.+|+|-...     
T Consensus        38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~-----  112 (265)
T COG3883          38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV-----  112 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            455567777777777777777777777777777777777765555566677777666 55566666666664322     


Q ss_pred             HHhHHHHHHHHHhHHHh--HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114          393 VAYAEASLEKQNMLYST--VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE  470 (617)
Q Consensus       393 ~ASaea~~eeqn~l~S~--IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~  470 (617)
                         .++..-..+++...  ++||=+=+.-++.=|.-=-.=.++-...-..|.+.-..|++++..|..=...||.++.+++
T Consensus       113 ---nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~  189 (265)
T COG3883         113 ---NGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLN  189 (265)
T ss_pred             ---cCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               22222233443322  3333222111111111000111122234455667777788888888887788888877766


Q ss_pred             HHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 007114          471 ETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMVVKLQ  520 (617)
Q Consensus       471 ~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~k~k  520 (617)
                      ..|.+           -.+|+.+++.+-...+.-...|. +=+-+++...
T Consensus       190 ~qk~e-----------~~~l~~~~aa~~a~~~~e~a~l~-~qka~a~a~a  227 (265)
T COG3883         190 SQKAE-----------KNALIAALAAKEASALGEKAALE-EQKALAEAAA  227 (265)
T ss_pred             HHHHH-----------HHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHH
Confidence            65543           46778888887777777777776 4444444444

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.79  E-value=64  Score=39.10  Aligned_cols=125  Identities=14%  Similarity=0.243  Sum_probs=83.7

Q ss_pred             hhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhh
Q 007114          367 GSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANA  446 (617)
Q Consensus       367 ~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~  446 (617)
                      +|+.|++|++.|+..|-+....+..++-..+....+-+...++|+.+-.-|.+++.|+.+.=---+.-..+++..--+|.
T Consensus       445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~  524 (1118)
T KOG1029|consen  445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHK  524 (1118)
T ss_pred             HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence            44559999999999999999999999999888888888888889999888999888776653322223333333322232


Q ss_pred             hhHH---HHHhhHhH----HHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHH
Q 007114          447 GLTE---EISFLRDR----LECLEASLHQAEETKLATAKDIGIRTKVITNLV  491 (617)
Q Consensus       447 eLne---EL~fLksr----~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv  491 (617)
                      .=+.   +|...+-+    -.-|+.+|..+.-++.+.-.||.+-+.-++.|.
T Consensus       525 ~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk  576 (1118)
T KOG1029|consen  525 ETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELK  576 (1118)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            2222   22222111    234556666777788888888887666555553

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.64  E-value=4  Score=39.74  Aligned_cols=87  Identities=23%  Similarity=0.206  Sum_probs=56.6

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114          371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne  450 (617)
                      ++.++..++..+.+-...+....+.....+.+...+...|..+...|+.|++-+.-.--....+|.++..|...|-+|-+
T Consensus       100 ~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~  179 (194)
T PF08614_consen  100 LNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE  179 (194)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666677777777777777777777777777777777888888888888888877777778888888888888888877


Q ss_pred             HHHhhHh
Q 007114          451 EISFLRD  457 (617)
Q Consensus       451 EL~fLks  457 (617)
                      -+=-.+.
T Consensus       180 Rwm~~k~  186 (194)
T PF08614_consen  180 RWMQRKA  186 (194)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=88.61  E-value=14  Score=41.72  Aligned_cols=94  Identities=23%  Similarity=0.241  Sum_probs=66.2

Q ss_pred             HHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhH
Q 007114          377 SLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLR  456 (617)
Q Consensus       377 sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLk  456 (617)
                      .||+|-..++..++.+++...    .+..+.+.-.-+|+..-.++.|+-+-.       .+...+.|-|..|.+.+...+
T Consensus       348 qlen~k~~~e~~~~e~~~l~~----~~~~~e~~kk~~e~k~~q~q~k~~k~~-------kel~~~~E~n~~l~knq~vw~  416 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQ----ESSDLEAEKKIVERKLQQLQTKLKKCQ-------KELKEEREENKKLIKNQDVWR  416 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHH
Confidence            455555555555555554333    344555666666666667777776665       477777899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHhhh
Q 007114          457 DRLECLEASLHQAEETKLATAKDIG  481 (617)
Q Consensus       457 sr~~~LE~~L~qa~~~K~stakdI~  481 (617)
                      +++..+|.++..+..+|.....||.
T Consensus       417 ~kl~~~~e~~~~~~~s~d~~I~dLq  441 (493)
T KOG0804|consen  417 GKLKELEEREKEALGSKDEKITDLQ  441 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888777666654

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=88.06  E-value=85  Score=39.67  Aligned_cols=112  Identities=17%  Similarity=0.095  Sum_probs=74.5

Q ss_pred             hhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhH
Q 007114          233 MDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGL  312 (617)
Q Consensus       233 ~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel  312 (617)
                      +-..+++++..+.    .-.||......++.+....+=.+    -+ ..-.+.-...++.+++....-++.-.-.+|..+
T Consensus       934 ~~aqk~~~~ine~----~s~l~~~~~~~~~~~~~~~~~~~----~~-~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l 1004 (1294)
T KOG0962|consen  934 KLAQKKRNDINEK----VSLLHQIYKLNECFEQYGFDDLR----IA-QLSESEEHLEERDNEVNEIKQKIRNQYQRERNL 1004 (1294)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHhhhhhc----hH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3334444444333    33455555555555554444333    11 122233345566777777777788888999999


Q ss_pred             HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114          313 RSKLD--SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL  354 (617)
Q Consensus       313 ~sKLk--slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L  354 (617)
                      ++.|.  -++.|++.++.....+-.++.++. ++.+++....+.
T Consensus      1005 ~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~-~~~~~ee~~~L~ 1047 (1294)
T KOG0962|consen 1005 KDNLTLRNLERKLKELERELSELDKQILEAD-IKSVKEERVKLE 1047 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHH
Confidence            99887  899999999999999999999999 888877766554

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.83  E-value=62  Score=37.86  Aligned_cols=232  Identities=20%  Similarity=0.229  Sum_probs=135.7

Q ss_pred             hhHHHHHHhHHHHhhhc------------ccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhh
Q 007114          286 GISKELLGRLQIVLFNM------------NGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKS  353 (617)
Q Consensus       286 g~skel~gkLq~~qf~L------------~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~  353 (617)
                      ...++..|..++.+---            +.|.-+|...--|.-.+|..|+.+.++....+....+-++..+-----..-
T Consensus        67 dqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~  146 (772)
T KOG0999|consen   67 DQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAA  146 (772)
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            55677777777665443            344444444444444555555544444444433333332222211111112


Q ss_pred             hHHhhHHHhhhhhhhhh-----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114          354 LAETNIELNEDLKGSRA-----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD  428 (617)
Q Consensus       354 LteTN~eL~~el~~Lk~-----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE  428 (617)
                      +..--..|+.+|.++|-     +++.-     .|.|-++-||.-+++--.+|++++-+.-+|+-+|.-|+=|+..+-.|.
T Consensus       147 ~E~qR~rlr~elKe~KfRE~RllseYS-----ELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~  221 (772)
T KOG0999|consen  147 VEDQRRRLRDELKEYKFREARLLSEYS-----ELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAI  221 (772)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22333456666666665     44432     234456778888999999999999999999999999999999999988


Q ss_pred             hhhhhHHHHHhhH-------HHhhhhhHHHHHhhHhHH-----H----HHHHHHHHHHHHhhhhhH-hhhhhhHHHHHHH
Q 007114          429 SRADSAEEKLIIL-------SEANAGLTEEISFLRDRL-----E----CLEASLHQAEETKLATAK-DIGIRTKVITNLV  491 (617)
Q Consensus       429 SRAe~AE~kc~~L-------tEtN~eLneEL~fLksr~-----~----~LE~~L~qa~~~K~stak-dI~~~tK~i~dLv  491 (617)
                      .--+.||.+...=       -+...-|..||+-++++=     +    +|+.++..=...--..++ +-|.-+|+--|+.
T Consensus       222 ~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~  301 (772)
T KOG0999|consen  222 RLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLF  301 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhh
Confidence            7777777654321       233456778888887741     1    333333210000000111 1122222222222


Q ss_pred             ------------HHHHHHHHHHHHhhhhhhhhhHHHHHHhhhc
Q 007114          492 ------------MQMAVERERLRQQISSLAMENKVMVVKLQQT  522 (617)
Q Consensus       492 ------------~QLa~ErErL~~Qissl~~eNk~L~~k~k~~  522 (617)
                                  --+-.|.++|++|+-+.-++.-.|...++.+
T Consensus       302 tel~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dt  344 (772)
T KOG0999|consen  302 TELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDT  344 (772)
T ss_pred             hhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence                        2345789999999999999999999999864

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=87.73  E-value=34  Score=34.72  Aligned_cols=110  Identities=17%  Similarity=0.143  Sum_probs=75.7

Q ss_pred             hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHH
Q 007114          234 DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLR  313 (617)
Q Consensus       234 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~  313 (617)
                      .+|+.+....+-.+.|..+...+-.-...+...++....|-..-.-.++-+.....+++.++...--  ++....-.++.
T Consensus        49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~  126 (264)
T PF06008_consen   49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQ  126 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHH
Confidence            4556666666666777777777777777777888888877766666666666666677776665443  66667889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007114          314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGA  347 (617)
Q Consensus       314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~a  347 (617)
                      .+|+.++.-|+.|....  +...-..|+.-...|
T Consensus       127 ~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A  158 (264)
T PF06008_consen  127 RALAEAQRMLEEMRKRD--FTPQRQNAEDELKEA  158 (264)
T ss_pred             HHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHH
Confidence            99999999998887663  444444444433333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=87.62  E-value=84  Score=39.12  Aligned_cols=150  Identities=13%  Similarity=0.158  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhHhhhhhHHhhHHHhhhhhh---hhh-----hhHHHHHH
Q 007114          318 SLVKQVEVKESVIASLRENLSEAQARADG-----------AEVRCKSLAETNIELNEDLKG---SRA-----TSEKVESL  378 (617)
Q Consensus       318 slEeqL~~len~~e~LKe~i~~AEsra~~-----------aeskc~~LteTN~eL~~el~~---Lk~-----lsEKv~sL  378 (617)
                      .||.++..-.+-..+++++...+.+|...           ...--+.|.+.|.+|+.....   +..     +.-....+
T Consensus       106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l  185 (1109)
T PRK10929        106 ALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAAL  185 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHH
Confidence            44444444444444555555544444422           122224455555555442211   111     33344556


Q ss_pred             HHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhh-----hhhhhhhHHH---H-------HhhHHH
Q 007114          379 ERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSK-----ADSRADSAEE---K-------LIILSE  443 (617)
Q Consensus       379 EkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kvsk-----AESRAe~AE~---k-------c~~LtE  443 (617)
                      +-|+...+.-+..+..-.+-.+.+++.+.-++..++.-|+.|++.+..     +|..++.|+.   +       ...+.+
T Consensus       186 ~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~  265 (1109)
T PRK10929        186 KALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFK  265 (1109)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHH
Confidence            666666665555555555555666666666677777777777766654     3333333332   1       234457


Q ss_pred             hhhhhHHHHHhhHhHHHHHHHHHH
Q 007114          444 ANAGLTEEISFLRDRLECLEASLH  467 (617)
Q Consensus       444 tN~eLneEL~fLksr~~~LE~~L~  467 (617)
                      .|.+|.++|...-.|++.|-.+-.
T Consensus       266 ~N~~Ls~~L~~~t~~~n~l~~~~~  289 (1109)
T PRK10929        266 INRELSQALNQQAQRMDLIASQQR  289 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999988888777755443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=87.54  E-value=0.26  Score=56.36  Aligned_cols=150  Identities=23%  Similarity=0.268  Sum_probs=0.0

Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHH----HHHHHHHHHhHH-HH
Q 007114          318 SLVKQVE---VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKV----ESLERQLRESDI-QL  389 (617)
Q Consensus       318 slEeqL~---~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv----~sLEkQLkEse~-QL  389 (617)
                      .||++|+   .+...++.+|..|.+-+.+......+...|..-|.+|.+++..|..-.+++    ..|...+.+..+ +.
T Consensus       350 ~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~  429 (713)
T PF05622_consen  350 MLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQA  429 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            6666666   455555556666665555555555555555555555555555544422222    222222222211 11


Q ss_pred             HH---------HHHhHHHHHHHHH--hHHHhHhhhHHHHHHHHHhh--------hhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114          390 QH---------AVAYAEASLEKQN--MLYSTVKDMENLIQDLKLKV--------SKADSRADSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       390 ~~---------A~ASaea~~eeqn--~l~S~IsdMEnvIEeLK~Kv--------skAESRAe~AE~kc~~LtEtN~eLne  450 (617)
                      ..         ...+.+..-.++.  .+...|..++.=.+-|+.++        ....+..+.|...+..|...|...++
T Consensus       430 ~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~  509 (713)
T PF05622_consen  430 QQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANE  509 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            10         0111111111111  23344555555455554333        33345556666777778777888888


Q ss_pred             HHHhhHhHHHHHHHHHH
Q 007114          451 EISFLRDRLECLEASLH  467 (617)
Q Consensus       451 EL~fLksr~~~LE~~L~  467 (617)
                      .+..|++.++.|.+.|.
T Consensus       510 ~~~~lq~qle~lq~~l~  526 (713)
T PF05622_consen  510 KILELQSQLEELQKSLQ  526 (713)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88888888887777765

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.38  E-value=86  Score=38.97  Aligned_cols=135  Identities=20%  Similarity=0.233  Sum_probs=69.4

Q ss_pred             hHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHH
Q 007114          280 SAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRE---------------------NLS  338 (617)
Q Consensus       280 a~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe---------------------~i~  338 (617)
                      ...-|++.=.-+...|..++.   ... +.+++.+|+..||.++.-+..-.+.+|.                     .|+
T Consensus       653 ~~~~L~~~k~rl~eel~ei~~---~~~-e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~  728 (1141)
T KOG0018|consen  653 EVDQLKEKKERLLEELKEIQK---RRK-EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS  728 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence            344555555555555555555   222 6677777777777766644444444444                     444


Q ss_pred             HHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-------------------------hhHHHHHHHHHHHHhHHHHHHHH
Q 007114          339 EAQARADGAEVRCKSLAETNIELNEDLKGSRA-------------------------TSEKVESLERQLRESDIQLQHAV  393 (617)
Q Consensus       339 ~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-------------------------lsEKv~sLEkQLkEse~QL~~A~  393 (617)
                      .-+-+.++.|...+.|       .+.++.+.+                         -..|.-.+|+|+.-.+.|+.--+
T Consensus       729 ~i~r~l~~~e~~~~~L-------~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~  801 (1141)
T KOG0018|consen  729 EIKRKLQNREGEMKEL-------EERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEK  801 (1141)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhee
Confidence            3333444444443333       223333322                         23345555666655555555444


Q ss_pred             HhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhh
Q 007114          394 AYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKA  427 (617)
Q Consensus       394 ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskA  427 (617)
                      .  ..-+...++....+++.+.-++.++.+...+
T Consensus       802 ~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~  833 (1141)
T KOG0018|consen  802 Q--KDTQRRVERWERSVEDLEKEIEGLKKDEEAA  833 (1141)
T ss_pred             c--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence            4  2233445566666777777777666644444

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=87.25  E-value=41  Score=40.19  Aligned_cols=87  Identities=26%  Similarity=0.283  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-------hhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114          325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-------TSEKVESLERQLRESDIQLQHAVAYAE  397 (617)
Q Consensus       325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-------lsEKv~sLEkQLkEse~QL~~A~ASae  397 (617)
                      -+++.|-.|-+.+..||-+..++-. ...|-+.|.+|...++++..       --+.+.-|+.++.+...-|+.|..--+
T Consensus       109 q~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqree  187 (916)
T KOG0249|consen  109 QNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREK  187 (916)
T ss_pred             hhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888899999999999999999988 89999999999999999887       344566666677666666776665544


Q ss_pred             HHHHHHHhHHHhHhh
Q 007114          398 ASLEKQNMLYSTVKD  412 (617)
Q Consensus       398 a~~eeqn~l~S~Isd  412 (617)
                      -..+.-.-++.+.-+
T Consensus       188 mneeh~~rlsdtvdE  202 (916)
T KOG0249|consen  188 MNEEHNKRLSDTVDE  202 (916)
T ss_pred             hhhhhccccccccHH
Confidence            444443344555443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=87.22  E-value=22  Score=41.98  Aligned_cols=99  Identities=22%  Similarity=0.245  Sum_probs=55.2

Q ss_pred             hhcccchhchhhHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHhhhhhhhHhh
Q 007114          300 FNMNGSVQREAGLRSKLDSLVKQVE----------------------------VKESVIASLRENLSEAQARADGAEVRC  351 (617)
Q Consensus       300 f~L~as~~REsel~sKLkslEeqL~----------------------------~len~~e~LKe~i~~AEsra~~aeskc  351 (617)
                      .=|..+..||..+..++..|+..|+                            .+|-....||+.|.++-.|=..--..+
T Consensus        20 ~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy   99 (717)
T PF09730_consen   20 SLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY   99 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3455566666666666666665555                            333344444555555444444444555


Q ss_pred             hhhHHhhHHHhhhhhhhhh-------hhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114          352 KSLAETNIELNEDLKGSRA-------TSEKVESLERQLRESDIQLQHAVAYAEA  398 (617)
Q Consensus       352 ~~LteTN~eL~~el~~Lk~-------lsEKv~sLEkQLkEse~QL~~A~ASaea  398 (617)
                      ..|.+-||-|+..+..||+       +..-+..|++.+--...|+..|.---+-
T Consensus       100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~i  153 (717)
T PF09730_consen  100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEI  153 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666666666666665       4555556666666666665555444333

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=87.04  E-value=50  Score=35.95  Aligned_cols=27  Identities=19%  Similarity=0.383  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 007114          373 EKVESLERQLRESDIQLQHAVAYAEAS  399 (617)
Q Consensus       373 EKv~sLEkQLkEse~QL~~A~ASaea~  399 (617)
                      .++..++.++...+.++..+.+.....
T Consensus       204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l  230 (498)
T TIGR03007       204 SEISEAQEELEAARLELNEAIAQRDAL  230 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555554444444444444443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=86.77  E-value=45  Score=35.16  Aligned_cols=137  Identities=16%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             HHHHHHHhhhhhhhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhh
Q 007114          222 LRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFN  301 (617)
Q Consensus       222 LrMLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~  301 (617)
                      ++-.=+-.|+.+=.|=...-...+...|...+....++...|......+.+-+-...+....|+.....+......+   
T Consensus       127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~---  203 (325)
T PF08317_consen  127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEI---  203 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence            33334444555555555555566667777777777777777766665555555544444444444444444333321   


Q ss_pred             cccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhh
Q 007114          302 MNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGS  368 (617)
Q Consensus       302 L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~L  368 (617)
                             ++.=..+|.++...|......++..|..+.+.+.+.+....++..+++--.++..+|.++
T Consensus       204 -------~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  204 -------ESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             -------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   111235566666666666666776666666666655555555555544444444444333

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.59  E-value=23  Score=33.14  Aligned_cols=93  Identities=30%  Similarity=0.363  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114          319 LVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEA  398 (617)
Q Consensus       319 lEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea  398 (617)
                      +--+++.++..+..+|+.+.+.+..-..+..++-.|+..|-++       +.....+..|+.++++.+.+...+-.--+.
T Consensus        21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~-------~~~~~~~~~L~~el~~l~~ry~t~LellGE   93 (120)
T PF12325_consen   21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL-------RALKKEVEELEQELEELQQRYQTLLELLGE   93 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3445667777788888888877777777766666665555444       556667788888888888888887777777


Q ss_pred             HHHHHHhHHHhHhhhHHHHH
Q 007114          399 SLEKQNMLYSTVKDMENLIQ  418 (617)
Q Consensus       399 ~~eeqn~l~S~IsdMEnvIE  418 (617)
                      .-|+-+.|...|.||..+..
T Consensus        94 K~E~veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   94 KSEEVEELRADVQDLKEMYR  113 (120)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            77776666666666665543

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=86.58  E-value=14  Score=42.40  Aligned_cols=51  Identities=12%  Similarity=0.144  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114          374 KVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKV  424 (617)
Q Consensus       374 Kv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~Kv  424 (617)
                      -++.++++|++.+.|+..-......--.+.+..+-+++.+.+-|.|++.|+
T Consensus       199 ~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~  249 (596)
T KOG4360|consen  199 LYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKI  249 (596)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            355778888888777655544444555566777778888888888888743

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=86.57  E-value=73  Score=37.37  Aligned_cols=244  Identities=20%  Similarity=0.152  Sum_probs=120.7

Q ss_pred             HHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHHhhhhhhhccccccchhhHH--HHHhhhhHHHHHHHHHHHHHHHHHhhH
Q 007114           97 VETALAFDLLSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIE--MEEKLLDSEDSLQQSRDQILEIKKQSA  174 (617)
Q Consensus        97 ~ekaleFDlL~gilDSEv~Ele~~~~tlq~~I~~~~~~i~s~~~~g~~f~~--~~~KL~~~~~sLkQ~~e~i~eik~qsa  174 (617)
                      .-|-|.|+=|-.-||+++++|.+-=++.+    ..|+...+-+   .-|-.  =+.|+.-..--||++|..|--+-+-|-
T Consensus        11 ~Wk~~dle~LQreLd~~~~~l~~~Q~~S~----~srk~L~e~t---refkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk   83 (629)
T KOG0963|consen   11 YWKRFDLERLQRELDAEATEIAQRQDESE----ISRKRLAEET---REFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSK   83 (629)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHhH---HHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788899999999999988765554    3444333322   22332  367888888889999999998877764


Q ss_pred             HHHHHHhh-hhccCCCCCCCCCCCcccccccchhhhhhhc-cHHHHHHHHHHHHHHhhhhhhhHHHhHHHHHHHHHHHhh
Q 007114          175 KFQRTLSA-LDREGNWISDKDTGSLEDDQFLNENAKIKLQ-TAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFR  252 (617)
Q Consensus       175 ~fqr~~~~-~~~~~~~~~~~~~~~~ed~~~~~~~~~~~mq-t~eQqR~iLrMLEkSlA~e~dLEkkL~es~~~eeeLk~k  252 (617)
                      -=+.+|-. |+.-..-|....  +...    -.+-..+.+ ..++.|...+-||+-...=.|++++=    .....|+.+
T Consensus        84 ~aE~afl~vye~L~eaPDP~p--ll~s----a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq----~~v~~l~e~  153 (629)
T KOG0963|consen   84 FAEAAFLDVYEKLIEAPDPVP--LLAS----AAELLNKQQKASEENEELKEELEEVNNELADLKTQQ----VTVRNLKER  153 (629)
T ss_pred             hhHHHHHHHHHHHhhCCCCch--HHHH----HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhH----HHHHhHHHH
Confidence            43333321 221112111111  0000    011112222 24556666666766555444544432    234455555


Q ss_pred             hhhhhHHH-HhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHH----
Q 007114          253 LGSFEQEL-LYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKE----  327 (617)
Q Consensus       253 L~~~eqe~-~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~le----  327 (617)
                      +...++.. -+.+.++...|+..-  .|..+...|    ++...+..+-.+..+...=+.+.+.++..-.+|-+++    
T Consensus       154 l~k~~~~~~~~ie~~a~~~e~~~~--q~~~e~e~~----L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~d  227 (629)
T KOG0963|consen  154 LRKLEQLLEIFIENAANETEEKLE--QEWAEREAG----LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYD  227 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Confidence            54444432 244555556655432  222333222    2222333333222222222222222221112222222    


Q ss_pred             -------HHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhh
Q 007114          328 -------SVIASLRENLSEAQARADGAEVRCKSLAETNIELNE  363 (617)
Q Consensus       328 -------n~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~  363 (617)
                             ..|.=+-.++..|..|+-.++.+|..|.+-=..-|.
T Consensus       228 ee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~  270 (629)
T KOG0963|consen  228 EEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS  270 (629)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                   223334455668888888888888887665444333

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=86.38  E-value=65  Score=36.59  Aligned_cols=119  Identities=18%  Similarity=0.241  Sum_probs=69.5

Q ss_pred             HhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---h----hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhh
Q 007114          341 QARADGAEVRCKSLAETNIELNEDLKGSRA---T----SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDM  413 (617)
Q Consensus       341 Esra~~aeskc~~LteTN~eL~~el~~Lk~---l----sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdM  413 (617)
                      +.....-......+...|-+|..+++.++.   +    .+.+..+++|++....+...........+.-+..+...+.++
T Consensus       305 ~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~  384 (560)
T PF06160_consen  305 EKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEI  384 (560)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence            334445556677888899999999999998   3    347778888888888777777666665554444444444444


Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHH
Q 007114          414 ENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASL  466 (617)
Q Consensus       414 EnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L  466 (617)
                      ..-++.+.......-       .....|...-..-.+.|.-|+..+....+.+
T Consensus       385 ~~~l~~ie~~q~~~~-------~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l  430 (560)
T PF06160_consen  385 EEQLEEIEEEQEEIN-------ESLQSLRKDEKEAREKLQKLKQKLREIKRRL  430 (560)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444433332222       2334444444444444444554444444444

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=86.35  E-value=28  Score=32.40  Aligned_cols=39  Identities=23%  Similarity=0.324  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH
Q 007114          318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAE  356 (617)
Q Consensus       318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~Lte  356 (617)
                      .+.-....+.+.++.|++++..++.....++.++..|..
T Consensus        63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~  101 (151)
T PF11559_consen   63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK  101 (151)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555577777777777777777777777777777633

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=85.80  E-value=5.1  Score=35.54  Aligned_cols=90  Identities=23%  Similarity=0.215  Sum_probs=69.4

Q ss_pred             hhHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHH
Q 007114          234 DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLR  313 (617)
Q Consensus       234 dLEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~  313 (617)
                      .+++...+.....-.+...++..++.+..++-.-...-.++|++....+.|..+.+-+..-+.-..-........|.+++
T Consensus         7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~   86 (96)
T PF08647_consen    7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFV   86 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            46777788888888888999999999999999999999999999999999998877655444433333333334777777


Q ss_pred             HHHHHHHHHH
Q 007114          314 SKLDSLVKQV  323 (617)
Q Consensus       314 sKLkslEeqL  323 (617)
                      .+|+.+|+|+
T Consensus        87 ~~l~~~Eke~   96 (96)
T PF08647_consen   87 RKLKNLEKEL   96 (96)
T ss_pred             HHHHHhhccC
Confidence            7777777653

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.97  E-value=50  Score=35.26  Aligned_cols=57  Identities=25%  Similarity=0.323  Sum_probs=30.9

Q ss_pred             HHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHH---HHhhHHHhhhhhHHHHHhhHhHHHHHHHH
Q 007114          403 QNMLYSTVKDMENLIQDLKLKVSKADSRADSAEE---KLIILSEANAGLTEEISFLRDRLECLEAS  465 (617)
Q Consensus       403 qn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~---kc~~LtEtN~eLneEL~fLksr~~~LE~~  465 (617)
                      ++.+..++..++..|++.+.+.....+....|+.   +|.+.|      ..|+..|+.++..||+.
T Consensus       227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t------~~Ei~~Lk~~~~~Le~l  286 (312)
T smart00787      227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT------FKEIEKLKEQLKLLQSL  286 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHH
Confidence            3334444555555555555555444444444444   455555      35777777777777654

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF15294 Leu_zip: Leucine zipper

Probab=84.22  E-value=63  Score=34.50  Aligned_cols=91  Identities=19%  Similarity=0.196  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhH----------------HHHHHHHHHHHHHHhhhhh
Q 007114          414 ENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDR----------------LECLEASLHQAEETKLATA  477 (617)
Q Consensus       414 EnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr----------------~~~LE~~L~qa~~~K~sta  477 (617)
                      -.-|..|+.-.-++-+|--+.|..|+...+.+-+|...|+.++.-                +.+||.++.++...=..++
T Consensus       131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~  210 (278)
T PF15294_consen  131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKAL  210 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            345777888888888888888899999999999999999988871                4556666666655544556


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 007114          478 KDIGIRTKVITNLVMQMAVERERLRQQ  504 (617)
Q Consensus       478 kdI~~~tK~i~dLv~QLa~ErErL~~Q  504 (617)
                      .|.....+.+++-|.--=.+.-|.|.|
T Consensus       211 ~d~~~~~k~L~e~L~~~KhelL~~Qeq  237 (278)
T PF15294_consen  211 QDKESQQKALEETLQSCKHELLRVQEQ  237 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            666666666555555444455555555

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=84.18  E-value=89  Score=36.27  Aligned_cols=191  Identities=19%  Similarity=0.241  Sum_probs=120.7

Q ss_pred             HHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhccc----------------chhchhhHHHHHHHHHHHHH---------
Q 007114          270 ACERLFEAENSAEVLKGISKELLGRLQIVLFNMNG----------------SVQREAGLRSKLDSLVKQVE---------  324 (617)
Q Consensus       270 ~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~a----------------s~~REsel~sKLkslEeqL~---------  324 (617)
                      +.+=+.+|++....|+-+....=+=+-.+|.+|-|                ...-+-.|.+.+..|.+||+         
T Consensus       195 A~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~L  274 (570)
T COG4477         195 AREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQL  274 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHh
Confidence            34445566666555555555444444444444433                33334566677777777777         


Q ss_pred             ---HHHHHHHHHHHHHH--------------HHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh---h----hHHHHHHHH
Q 007114          325 ---VKESVIASLRENLS--------------EAQARADGAEVRCKSLAETNIELNEDLKGSRA---T----SEKVESLER  380 (617)
Q Consensus       325 ---~len~~e~LKe~i~--------------~AEsra~~aeskc~~LteTN~eL~~el~~Lk~---l----sEKv~sLEk  380 (617)
                         .++-.+..+-+.|.              ..+.+...--...+...+-|-.|+.++..++.   +    .-.|...++
T Consensus       275 eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~  354 (570)
T COG4477         275 ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEK  354 (570)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence               12222222222221              22233333334455666778889999999988   2    237889999


Q ss_pred             HHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHH
Q 007114          381 QLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLE  460 (617)
Q Consensus       381 QLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~  460 (617)
                      .|++.+.++....+-.++...-+..+...+...+.-+.+++++--++-       ...+.|-..-++-.+.|.-|++++.
T Consensus       355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~-------e~L~~LrkdEl~Are~l~~~~~~l~  427 (570)
T COG4477         355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQ-------EHLTSLRKDELEARENLERLKSKLH  427 (570)
T ss_pred             HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888877777666666666666666777777666555543       5788888888888899999999877


Q ss_pred             HHHHHHH
Q 007114          461 CLEASLH  467 (617)
Q Consensus       461 ~LE~~L~  467 (617)
                      .+-+.+.
T Consensus       428 eikR~me  434 (570)
T COG4477         428 EIKRYME  434 (570)
T ss_pred             HHHHHHH
Confidence            6665553

>TIGR00634 recN DNA repair protein RecN

Probab=83.68  E-value=83  Score=35.50  Aligned_cols=47  Identities=23%  Similarity=0.132  Sum_probs=32.9

Q ss_pred             HhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHH
Q 007114          284 LKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVI  330 (617)
Q Consensus       284 L~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~  330 (617)
                      ++...+....+++..+-.|.....++.++..+++-++-|+++++.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~  205 (563)
T TIGR00634       159 KVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEAD  205 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence            55556666777777777777777777777777777777777555443

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=83.35  E-value=36  Score=31.95  Aligned_cols=89  Identities=18%  Similarity=0.294  Sum_probs=63.3

Q ss_pred             HHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhh---HHHHHhhHhHHHHHHHHHH---HHHHHhhh
Q 007114          402 KQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGL---TEEISFLRDRLECLEASLH---QAEETKLA  475 (617)
Q Consensus       402 eqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eL---neEL~fLksr~~~LE~~L~---qa~~~K~s  475 (617)
                      -.+.+.|+|+.+|.=+--+|..+...+..-+.+..+...|+..|-++   ..++..|+..+..|+.+..   ++--+|.+
T Consensus        17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E   96 (120)
T PF12325_consen   17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE   96 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            45678899999999999999999999999999999999999888554   3455555556666666554   44445555


Q ss_pred             hhHhhhhhhHHHHHH
Q 007114          476 TAKDIGIRTKVITNL  490 (617)
Q Consensus       476 takdI~~~tK~i~dL  490 (617)
                      -+.++-..-.=+++|
T Consensus        97 ~veEL~~Dv~DlK~m  111 (120)
T PF12325_consen   97 EVEELRADVQDLKEM  111 (120)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555554444444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=83.04  E-value=49  Score=32.43  Aligned_cols=133  Identities=20%  Similarity=0.221  Sum_probs=70.1

Q ss_pred             HHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHH
Q 007114          282 EVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIEL  361 (617)
Q Consensus       282 EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL  361 (617)
                      -+++|..+.+++++.--+                 +-++..+++|+..+..++..+..+-+.....+.+...+...-.++
T Consensus         8 ~~~~a~~~~~ld~~EDP~-----------------~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~   70 (221)
T PF04012_consen    8 TLVKANINELLDKAEDPE-----------------KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKW   70 (221)
T ss_pred             HHHHHHHHHHHHhhcCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777777777665322                 234444445555555555555544444444444443333333332


Q ss_pred             hhhhhhh-hh--------hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhh
Q 007114          362 NEDLKGS-RA--------TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRAD  432 (617)
Q Consensus       362 ~~el~~L-k~--------lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe  432 (617)
                      ......- +.        .-.+...++.++..++.++..+....+..+       ..|..|++=|.+++.+..-.-.|..
T Consensus        71 ~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~-------~~l~~l~~kl~e~k~k~~~l~ar~~  143 (221)
T PF04012_consen   71 EKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLK-------EQLEELEAKLEELKSKREELKAREN  143 (221)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222111 11        233555667777777776666666665544       4566666666666666666666665


Q ss_pred             hHHHHH
Q 007114          433 SAEEKL  438 (617)
Q Consensus       433 ~AE~kc  438 (617)
                      .|...-
T Consensus       144 ~a~a~~  149 (221)
T PF04012_consen  144 AAKAQK  149 (221)
T ss_pred             HHHHHH
Confidence            555544

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.99  E-value=9  Score=38.59  Aligned_cols=50  Identities=20%  Similarity=0.219  Sum_probs=35.2

Q ss_pred             hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHH
Q 007114          307 QREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAE  356 (617)
Q Consensus       307 ~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~Lte  356 (617)
                      .|-+++..++..++.+..++++.|..|++++..+.++...+++++..+..
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667777777777777777777777777777777766666666655543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=82.90  E-value=30  Score=32.21  Aligned_cols=61  Identities=15%  Similarity=0.173  Sum_probs=34.6

Q ss_pred             hHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 007114          448 LTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSL  508 (617)
Q Consensus       448 LneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl  508 (617)
                      +..+++....+...|++++..+...=-....|+..-+..+.+.-+|.+.|.-|-..+|..|
T Consensus        85 ~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kL  145 (151)
T PF11559_consen   85 LERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKL  145 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444445555555444443334444555556677777777777777776666655

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=82.88  E-value=1.3e+02  Score=36.99  Aligned_cols=97  Identities=22%  Similarity=0.250  Sum_probs=68.7

Q ss_pred             HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH---HHHHHhh
Q 007114          398 ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH---QAEETKL  474 (617)
Q Consensus       398 a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~---qa~~~K~  474 (617)
                      ..+.+.++....|-+|++.+.+|-+.+-+.-.-++-+|.|.....+.=-.|..||..+-.++..|+..+.   +....+.
T Consensus       449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~  528 (980)
T KOG0980|consen  449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQL  528 (980)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3455666666778899999998888887777666777788888888888899999999999999998865   4444444


Q ss_pred             hhhHhhhhhh-HHHHHHHHHH
Q 007114          475 ATAKDIGIRT-KVITNLVMQM  494 (617)
Q Consensus       475 stakdI~~~t-K~i~dLv~QL  494 (617)
                      +-..|....+ +.+-.+|.++
T Consensus       529 ~~l~~~l~~KD~~~~~~~~~~  549 (980)
T KOG0980|consen  529 AQLEDLLKQKDRLAAELVARE  549 (980)
T ss_pred             HHHHHHHHhhHHHHHHHHHHH
Confidence            4444444433 3344445444

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=82.75  E-value=55  Score=32.72  Aligned_cols=56  Identities=30%  Similarity=0.480  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHH
Q 007114          329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDI  387 (617)
Q Consensus       329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~  387 (617)
                      .|.+||++|.+...+....+.....+..-|-.|.+-|.   .+...+..|.++|+.|+.
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~---~a~~e~~eL~k~L~~y~k   83 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLK---KAEEEVEELRKQLKNYEK   83 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHH
Confidence            46677777766666655555555555555555544433   344556666666666554

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=82.56  E-value=1.1e+02  Score=36.31  Aligned_cols=68  Identities=21%  Similarity=0.210  Sum_probs=35.8

Q ss_pred             HHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 007114          442 SEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENK  513 (617)
Q Consensus       442 tEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk  513 (617)
                      .-+=+++-.++.+|+.+++..+++|.+++..=..+    +..-..++-=..+|-.|-+||+..+..+-+.+.
T Consensus       558 kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~----~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~  625 (698)
T KOG0978|consen  558 KKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAEL----ELELEIEKFKRKRLEEELERLKRKLERLKKEES  625 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            33445666777888888888888887665432222    222222222233444555555555544444433

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=82.40  E-value=41  Score=32.10  Aligned_cols=12  Identities=33%  Similarity=0.426  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q 007114          325 VKESVIASLREN  336 (617)
Q Consensus       325 ~len~~e~LKe~  336 (617)
                      +..+-+..+++.
T Consensus       106 ~~~~~l~~~~~~  117 (191)
T PF04156_consen  106 ELESELEKLKED  117 (191)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=82.13  E-value=62  Score=32.90  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             HHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114          290 ELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL  354 (617)
Q Consensus       290 el~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L  354 (617)
                      .+...++.+...|.+.....+--+.++..+|+++..++.-++.|++++..+-.+++.........
T Consensus        21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t   85 (264)
T PF06008_consen   21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERT   85 (264)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666777888888888888999999999999999889999888887777776665544433

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=81.08  E-value=1.5e+02  Score=36.78  Aligned_cols=225  Identities=19%  Similarity=0.198  Sum_probs=126.2

Q ss_pred             hhHHHHHHhHHHH-hhhcccchhchhhHHHHHH--------------------HHHHHHH--------------------
Q 007114          286 GISKELLGRLQIV-LFNMNGSVQREAGLRSKLD--------------------SLVKQVE--------------------  324 (617)
Q Consensus       286 g~skel~gkLq~~-qf~L~as~~REsel~sKLk--------------------slEeqL~--------------------  324 (617)
                      +-|-.++||.=.. =-+-.--.-|||-|--=|.                    .+||-|-                    
T Consensus       320 NqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQk  399 (1041)
T KOG0243|consen  320 NQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQK  399 (1041)
T ss_pred             hHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchH
Confidence            3455678886433 2333344569988877776                    7777776                    


Q ss_pred             --------HHHHHHHHHHHHHHHHHhhhh--hhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHH
Q 007114          325 --------VKESVIASLRENLSEAQARAD--GAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVA  394 (617)
Q Consensus       325 --------~len~~e~LKe~i~~AEsra~--~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~A  394 (617)
                              ++=..|+.||.++..|..+--  .++.+-.   .-+.+.+..-..++.+.+++..++++|++....+.+-.-
T Consensus       400 l~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~---~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~  476 (1041)
T KOG0243|consen  400 LMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYT---QEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLE  476 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                    666778888888887665421  2222221   223334444445555677888888888888887776555


Q ss_pred             hHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhh-------hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHH
Q 007114          395 YAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSR-------ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLH  467 (617)
Q Consensus       395 Saea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESR-------Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~  467 (617)
                      .-.-.+++...+.+.|..-..-++++++.+-++..+       ....+.--+.+.+-+.+|...+.--.+.+..|=++|.
T Consensus       477 ~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld  556 (1041)
T KOG0243|consen  477 IKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD  556 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555555565555555555555555555555555433       1111222222333344444444444444444444433


Q ss_pred             HHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHhh
Q 007114          468 QAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMEN-KVMVVKLQ  520 (617)
Q Consensus       468 qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eN-k~L~~k~k  520 (617)
                      ...       +.-.--..+|+++-+||..=...++..+.+-...= .+|...+.
T Consensus       557 ~~~-------~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~  603 (1041)
T KOG0243|consen  557 RKD-------RLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLA  603 (1041)
T ss_pred             hhh-------ccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence            221       12223356788888888888888888776544433 44444444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=80.79  E-value=84  Score=33.59  Aligned_cols=44  Identities=9%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             HHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhH
Q 007114          245 VEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGIS  288 (617)
Q Consensus       245 ~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~s  288 (617)
                      ++..+..|...+..-..|+++-...+..++-++|...+-++-..
T Consensus       158 ~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~  201 (444)
T TIGR03017       158 IDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEK  201 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44445556666666777888888888888888887777666543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=80.71  E-value=22  Score=40.19  Aligned_cols=101  Identities=20%  Similarity=0.257  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHH----HHHHHHHHHhHHHH
Q 007114          314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKV----ESLERQLRESDIQL  389 (617)
Q Consensus       314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv----~sLEkQLkEse~QL  389 (617)
                      ++|+...+.++.+-....+|+.+...+++.-...|.++++|..+=.++..++.++++.+.++    ...=.++++.+.|.
T Consensus       347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~  426 (493)
T KOG0804|consen  347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE  426 (493)
T ss_pred             HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            45555555555555556667778888899999999999999888888888888888844433    34445555555555


Q ss_pred             HHHHHhHHHHHHHHHhHHHhHhhhHHHH
Q 007114          390 QHAVAYAEASLEKQNMLYSTVKDMENLI  417 (617)
Q Consensus       390 ~~A~ASaea~~eeqn~l~S~IsdMEnvI  417 (617)
                      ..+..+-+   ++...|..+|+|+=-.|
T Consensus       427 ~~~~~s~d---~~I~dLqEQlrDlmf~l  451 (493)
T KOG0804|consen  427 KEALGSKD---EKITDLQEQLRDLMFFL  451 (493)
T ss_pred             HHHHHHHH---HHHHHHHHHHHhHheeh
Confidence            54444333   34334444555544333

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=80.68  E-value=63  Score=32.10  Aligned_cols=24  Identities=17%  Similarity=0.059  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHhhhhcccCCC
Q 007114          593 HFFIAVLIVLISAAAYYFQKQNYP  616 (617)
Q Consensus       593 ~i~~a~lvll~~~~~~~~~~~~~p  616 (617)
                      +-|.--+.+|.--|+||...+|.|
T Consensus       255 ~~f~~~v~lLn~nI~~L~~~q~~~  278 (302)
T PF10186_consen  255 QRFEYAVFLLNKNIAQLCFSQGID  278 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCC
Confidence            344444566667777777666655

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=80.66  E-value=1.2e+02  Score=35.20  Aligned_cols=57  Identities=16%  Similarity=0.184  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHH------HhH---hhhHHHHHHHHHhhhhhhh
Q 007114          373 EKVESLERQLRESDIQLQHAVAYAEASLEKQNMLY------STV---KDMENLIQDLKLKVSKADS  429 (617)
Q Consensus       373 EKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~------S~I---sdMEnvIEeLK~KvskAES  429 (617)
                      .++..|+.||.....++..|.+..+..+..+...-      ..+   -....+|.+|+.+....+.
T Consensus       237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~  302 (754)
T TIGR01005       237 QQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRA  302 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHH
Confidence            45555555555555555555554444433321100      000   0123567777776666654

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.32  E-value=21  Score=36.69  Aligned_cols=75  Identities=17%  Similarity=0.284  Sum_probs=57.2

Q ss_pred             HhhhhhHHHHHhhHh---HHHHHHHHHHHHHHHhhhhhHhh---hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 007114          443 EANAGLTEEISFLRD---RLECLEASLHQAEETKLATAKDI---GIRTKVITNLVMQMAVERERLRQQISSLAMENKVMV  516 (617)
Q Consensus       443 EtN~eLneEL~fLks---r~~~LE~~L~qa~~~K~stakdI---~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~  516 (617)
                      ..-.++-+|+.+++.   .+.++.+....+..+|++-+++|   ......+++.+.|.-.||++....|.-+..+=.-|.
T Consensus        15 k~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk   94 (230)
T PF10146_consen   15 KLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLK   94 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566677777777   46666666678888888877655   888888999999999999999999988887655543


Q ss_pred             H
Q 007114          517 V  517 (617)
Q Consensus       517 ~  517 (617)
                      .
T Consensus        95 ~   95 (230)
T PF10146_consen   95 D   95 (230)
T ss_pred             H
Confidence            3

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=80.30  E-value=78  Score=37.45  Aligned_cols=71  Identities=27%  Similarity=0.420  Sum_probs=42.5

Q ss_pred             HhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHH------hhhhhHhh--------hhhhHHHHHHHHHHHHHHHHHHH
Q 007114          438 LIILSEANAGLTEEISFLRDRLECLEASLHQAEET------KLATAKDI--------GIRTKVITNLVMQMAVERERLRQ  503 (617)
Q Consensus       438 c~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~------K~stakdI--------~~~tK~i~dLv~QLa~ErErL~~  503 (617)
                      .-.||++.-+..+||..++.++..|..++.++...      +.+.-++.        ..+.+.|++..+|.+.+-.++-+
T Consensus       627 ~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~  706 (717)
T PF10168_consen  627 LPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVK  706 (717)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33466666667777777777666666666544322      22222222        12356788888888888777776


Q ss_pred             hhhhh
Q 007114          504 QISSL  508 (617)
Q Consensus       504 Qissl  508 (617)
                      ||..+
T Consensus       707 ~ik~i  711 (717)
T PF10168_consen  707 QIKNI  711 (717)
T ss_pred             HHHHH
Confidence            66554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=80.01  E-value=80  Score=32.84  Aligned_cols=18  Identities=22%  Similarity=0.436  Sum_probs=7.7

Q ss_pred             HHHhhHhHHHHHHHHHHH
Q 007114          451 EISFLRDRLECLEASLHQ  468 (617)
Q Consensus       451 EL~fLksr~~~LE~~L~q  468 (617)
                      ++..++..+..++..+.+
T Consensus       218 ~l~~~~~~l~~~~~~~~~  235 (423)
T TIGR01843       218 ELEVLKRQIDELQLERQQ  235 (423)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            334444444444444443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	617
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.7 bits (185), Expect = 3e-14
 Identities = 73/561 (13%), Positives = 166/561 (29%), Gaps = 154/561 (27%)

Query: 38  DVIEELRSAGEVFSQLEL-HIACSSEKLVNLNILTMHVATRESEFEAFAKKREHILDDDS 96
           DV +  +S   + S+ E+ HI  S + +     L          F     K+E ++    
Sbjct: 37  DVQDMPKS---ILSKEEIDHIIMSKDAVSGTLRL----------FWTLLSKQEEMVQK-F 82

Query: 97  VETALAFDLLSGLLDSELRELENFITTLEADFVKAHE-LISSYTELGKASIEMEEKLLDS 155
           VE  L  +     L S ++  +   + +   +++  + L +      K ++   +  L  
Sbjct: 83  VEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140

Query: 156 EDSLQQSRDQ---ILE----IKKQS-----AKFQRTLSALDREGNWIS----DKDTGSLE 199
             +L + R     +++      K           +    +D +  W++    +     LE
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 200 DDQFLN--------------ENAKIKLQTAEQQ-RHFL--RMLEKSL-----------AR 231
             Q L                N K+++ + + + R  L  +  E  L             
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 232 EMDLE-KKL--TESRQVEEALK----FRLGSFEQELLYTEEEAMDACERLFEAENS---A 281
             +L  K L  T  +QV + L       +      +  T +E      +  +        
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 282 EVLKG----IS------KELLGR----LQIVLFNMNGSVQR------EAGLRSKLDSLV- 320
           EVL      +S      ++ L        +    +   ++        A  R   D L  
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 321 --KQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETN-----IELNEDLKGSRATSE 373
                 +   +++ +  ++ ++       ++   SL E       I +       +   E
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440

Query: 374 KVESLERQLRES----------DIQLQHA-------VAY--------------------- 395
              +L R + +           D+   +        + +                     
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500

Query: 396 --AEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEIS 453
              E  +   +  ++    + N +Q LK              +  I  ++        ++
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFY------------KPYICDNDPK--YERLVN 546

Query: 454 FLRDRLECLEASLHQAEETKL 474
            + D L  +E +L  ++ T L
Sbjct: 547 AILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 3e-08
 Identities = 78/443 (17%), Positives = 140/443 (31%), Gaps = 130/443 (29%)

Query: 210 IKLQTAEQQRHF---LRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEE 266
           +  +T E Q  +   L + E +     D        + V++  K  L   E + +   ++
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDC-------KDVQDMPKSILSKEEIDHIIMSKD 59

Query: 267 AMDACERLF-----EAENSA-----EVLK--------GISKELLGRLQI---------VL 299
           A+    RLF     + E        EVL+         I  E      +          L
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 300 FNMN-----GSVQRE---AGLRSKLDSL--VKQVEV-------KESVIAS--LRENLSEA 340
           +N N      +V R      LR  L  L   K V +       K + +A         + 
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-TWVALDVCLS--YKV 176

Query: 341 QARADGAEV------RCKSLAETNIELNEDL------------KGSRATSEKVESLERQL 382
           Q + D  ++       C S  ET +E+ + L              S     ++ S++ +L
Sbjct: 177 QCKMDF-KIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 383 RESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQ--DLKLKV-------SKADSRADS 433
           R     L  +  Y    L    +L   V++        +L  K+          D    +
Sbjct: 235 RR----LLKSKPYENCLL----VL-LNVQN-AKAWNAFNLSCKILLTTRFKQVTDF-LSA 283

Query: 434 AEEKLIILSEANAGLTEE--ISFLRDRLECLEASL-HQAEETKLATAKDIG--IRTKVIT 488
           A    I L   +  LT +   S L   L+C    L  +   T       I   IR  + T
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 489 ------------NLVMQMAVER---ERLRQQISSLAM--EN-----KVMVVKL--QQTKK 524
                         +++ ++        R+    L++   +      ++ + +     K 
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-IWFDVIKS 402

Query: 525 DPSIVRHDSTTASF-ERESKEVT 546
           D  +V +     S  E++ KE T
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKEST 425

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 8e-07
 Identities = 56/432 (12%), Positives = 123/432 (28%), Gaps = 148/432 (34%)

Query: 11  ASVVVNVGDSESESNKVY--SLEGISANGDVIEELRSAGEVFSQLELHIACSSEKLVNLN 68
             V ++         K++  +L+  ++   V+E L+    +  Q++ +    S+   N+ 
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNI- 223

Query: 69  ILTMHVATRESEFEAFAKKREH-----ILDD--DSVETALAFDL---------------- 105
            L +H    ++E     K + +     +L +  ++ +   AF+L                
Sbjct: 224 KLRIHSI--QAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDF 280

Query: 106 LSGLLDSELRELENFITTLEADFVKAHELISSYTELGKASIEME-------------EKL 152
           LS    + +  L++   TL  D  +   L+  Y +     +  E             E +
Sbjct: 281 LSAATTTHIS-LDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 153 LDSEDSLQQSRDQILEIKKQSAKFQRTLSALD--------------REGNWISDK----- 193
            D   +    +   +   K +   + +L+ L+                   I        
Sbjct: 338 RDGLATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 194 --DTGSLEDDQFLNENAK---------------------IKLQTAEQQRHFLRMLEK-SL 229
             D    +    +N+  K                     +K++   +      +++  ++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 230 AREMDLEKK----------------LTESRQVEEALKFR-----LGSFEQEL-------- 260
            +  D +                  L      E    FR         EQ++        
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515

Query: 261 -------------LY----TEEEAMDACERLFEA-----ENSAEVLKGISKELLGRLQIV 298
                         Y     + +     ERL  A         E L  I  +    L+I 
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKY--ERLVNAILDFLPKIEENL--ICSKYTDLLRIA 571

Query: 299 LFNMNGSVQREA 310
           L   + ++  EA
Sbjct: 572 LMAEDEAIFEEA 583

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 50/323 (15%), Positives = 110/323 (34%), Gaps = 28/323 (8%)

Query: 158  SLQQSRDQILEIKKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQT--- 214
             L +   Q  E++ +  + QRT     +    + +     LE         K  LQ    
Sbjct: 848  PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKE-----LEQKHTQLCEEKNLLQEKLQ 902

Query: 215  --AEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACE 272
               E       M  +  A++ +LE+ L E       ++ R+   E+     + E     +
Sbjct: 903  AETELYAEAEEMRVRLAAKKQELEEILHE-------MEARIEEEEERSQQLQAEKKKMQQ 955

Query: 273  RLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIAS 332
            ++ + E   E      +    +LQ+     +G +++   +   +  +  Q          
Sbjct: 956  QMLDLEEQLEEE----EAARQKLQLEKVTADGKIKK---MEDDILIMEDQNNKLTKERKL 1008

Query: 333  LRENLSEAQARADGAEVRCKSLAETNIELN---EDLKGSRATSEK-VESLERQLRESDIQ 388
            L E +S+        E + K+L +   +      +L+      EK  + LE+  R+ + +
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068

Query: 389  LQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGL 448
                         +   L + +   E  +Q    ++    S+ ++A +K+  L    + L
Sbjct: 1069 SSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128

Query: 449  TEEISFLRDRLECLEASLHQAEE 471
             E++   +      E       E
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSE 1151

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 48/276 (17%), Positives = 97/276 (35%), Gaps = 57/276 (20%)

Query: 110  LDSELRELENFITTLEADFVKAHELISSYTELGKASIEMEEKLLDSEDSLQQSRDQILEI 169
            L+ +L E E     L+                    +  + K+   ED +    DQ  ++
Sbjct: 960  LEEQLEEEEAARQKLQ-----------------LEKVTADGKIKKMEDDILIMEDQNNKL 1002

Query: 170  KKQSAKFQRTLSALDREGNWISDKDTGSLEDDQFLNENAKIKLQTAEQQRHFLRMLEKSL 229
             K+    +  +S L                            L   E++   L  L+   
Sbjct: 1003 TKERKLLEERVSDL-------------------------TTNLAEEEEKAKNLTKLKNKH 1037

Query: 230  AREM-DLEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGIS 288
               + +LE +L +  +  + L       E+     E E+ D  E++ E +     L    
Sbjct: 1038 ESMISELEVRLKKEEKSRQEL-------EKIKRKLEGESSDLHEQIAELQAQIAEL---- 1086

Query: 289  KELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAE 348
            K  L + +  L      ++ E   ++     +K++   ES I+ L+E+L   +A  + AE
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNN---ALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 349  VRCKSLAETNIELNEDLKGSRATSEKVESLERQLRE 384
             + + L+E    L  +L+ +  T+   + L     +
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 46/300 (15%), Positives = 95/300 (31%), Gaps = 34/300 (11%)

Query: 205  NENAKIKLQTAEQQRHFLRMLEKSLAREMDLEKKLTESRQVEEALKFRLGSFEQELLYTE 264
               A I +Q  ++  + +R   + +       + L     V    +  L   +  ++   
Sbjct: 815  RTRAAIIIQKFQR-MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKH 873

Query: 265  EEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVE 324
                 A         +   L+   + ++ + ++                 KL    + VE
Sbjct: 874  VRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL----------------KKLKIEARSVE 917

Query: 325  VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRE 384
              + +   L   + + Q + D      KSL E    L          +EK+ S   +LR 
Sbjct: 918  RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS---TETEKLRSDVERLRM 974

Query: 385  SDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEA 444
            S+ + ++A     +  E+   L   +   +   + ++    K     +    +L    E 
Sbjct: 975  SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL---KEQ 1031

Query: 445  NAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQ 504
            N  L  E   L  R+      + +  E KL                 +++ +  ERLR Q
Sbjct: 1032 NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ-----------LELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 41/241 (17%), Positives = 76/241 (31%), Gaps = 21/241 (8%)

Query: 333  LRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHA 392
            +R+     QA   G  VR K       E    +               +  ++ + LQ  
Sbjct: 838  MRDATIALQALLRGYLVRNK-YQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCC 896

Query: 393  VAYAEASLEKQNM---------LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE 443
                 A  E + +                +EN I  L+ K+ + +    S  EK+  L  
Sbjct: 897  YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956

Query: 444  ANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNL---VMQMAVERER 500
              +  TE++    +RL   E     A    L+  ++I    K +         +    ++
Sbjct: 957  TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016

Query: 501  LRQQISSLAMENKVMVVKLQQTKKDPSIVRHDSTTASFERESKEVTELSAAVSEEDKRQK 560
             + +   L  E K     L+  K        +        ++KE+TE       E+ +Q 
Sbjct: 1017 YKHETEQLVSELKEQNTLLKTEK--------EELNRRIHDQAKEITETMEKKLVEETKQL 1068

Query: 561  N 561
             
Sbjct: 1069 E 1069

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	617
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.01
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.85
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.24
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.18
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	98.17
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.7
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	96.56
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.35
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.99
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.72
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.67
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.53
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.48
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.35
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.14
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.83
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	93.63
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	93.2
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.73
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	92.62
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	92.36
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.3
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.24
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	90.1
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	89.87
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	87.04
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	86.83
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	86.8
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.28
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	83.75
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	83.46
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	83.34
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	83.21
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.74
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	81.38
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	81.27
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.56

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.01  E-value=8.9e-06  Score=73.47  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=38.5

Q ss_pred             HHhhhhhhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHH
Q 007114          249 LKFRLGSFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKES  328 (617)
Q Consensus       249 Lk~kL~~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len  328 (617)
                      +..++...+.+...++.....+...+-++....+-+......+...++..+..+.....+=..+...+..+.+.+..++.
T Consensus        18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (284)
T 1c1g_A           18 ALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE   97 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333333333333322223333333333333333333


Q ss_pred             HHHHHHHHHHHHHhhhhhhhHhhh
Q 007114          329 VIASLRENLSEAQARADGAEVRCK  352 (617)
Q Consensus       329 ~~e~LKe~i~~AEsra~~aeskc~  352 (617)
                      .+..+...+..+..+...+..++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~  121 (284)
T 1c1g_A           98 ELDRAQERLATALQKLEEAEKAAD  121 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444333333333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.85  E-value=3.7e-05  Score=69.42  Aligned_cols=17  Identities=6%  Similarity=0.098  Sum_probs=6.1

Q ss_pred             HHHHhhHhHHHHHHHHH
Q 007114          450 EEISFLRDRLECLEASL  466 (617)
Q Consensus       450 eEL~fLksr~~~LE~~L  466 (617)
                      .++..+......++..+
T Consensus       209 ~~~~~~~~~~~~~~~~l  225 (284)
T 1c1g_A          209 AQAEKYSQKEDKYEEEI  225 (284)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHH
Confidence            33333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.24  E-value=2.2e-06  Score=98.99  Aligned_cols=98  Identities=14%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             HhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhh
Q 007114          404 NMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIR  483 (617)
Q Consensus       404 n~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~  483 (617)
                      ..+..++.+++.-+..++.++.+.+.+.+....+...+...-.++..++..++.++..|+..|.+.....          
T Consensus      1070 ~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~---------- 1139 (1184)
T 1i84_S         1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR---------- 1139 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            3344445555555555555555555555555445444444445555666666666666665555432111          


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 007114          484 TKVITNLVMQMAVERERLRQQISSLAMEN  512 (617)
Q Consensus       484 tK~i~dLv~QLa~ErErL~~Qissl~~eN  512 (617)
                       .-...-...|..+.+.|+.+|..+...|
T Consensus      1140 -~~le~q~~~L~~ele~L~~~Ieel~~vn 1167 (1184)
T 1i84_S         1140 -NKAEKQKRDLSEELEALKTELEDTLDTT 1167 (1184)
T ss_dssp             -----------------------------
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence             1111122345566677777777665544

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.18  E-value=1.4e-06  Score=100.62  Aligned_cols=6  Identities=33%  Similarity=0.567  Sum_probs=0.0

Q ss_pred             HHHHhh
Q 007114          500 RLRQQI  505 (617)
Q Consensus       500 rL~~Qi  505 (617)
                      +|+.+|
T Consensus      1120 ~Le~ei 1125 (1184)
T 1i84_S         1120 ELESHI 1125 (1184)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=98.17  E-value=0.00011  Score=68.88  Aligned_cols=107  Identities=22%  Similarity=0.316  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhh
Q 007114          333 LRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKD  412 (617)
Q Consensus       333 LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~Isd  412 (617)
                      +-.++.+||.|+..|+++|..|.+.                 +...-+.+|..+.+-..+..--+              .
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEee-----------------L~~v~~nlKsLE~seekasqrEd--------------~   74 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEE-----------------LKTVTNNLKSLEAQAEKYSQKED--------------K   74 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhccchhhhhHHHHHHH--------------H
Confidence            7778889999999999999988432                 33333444444443333333333              4


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114          413 MENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE  470 (617)
Q Consensus       413 MEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~  470 (617)
                      +|.-|..|..++-.||+||+-||..+..|-.+.-.|-.+|..-|-+...+...|.+..
T Consensus        75 yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl  132 (155)
T 2efr_A           75 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLE  132 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555999999999999999999999999999999999999999888888888887443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.70  E-value=0.23  Score=46.67  Aligned_cols=42  Identities=31%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhh
Q 007114          325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLK  366 (617)
Q Consensus       325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~  366 (617)
                      .++..|..|..++.+||.||..|+..+..|..+.-.|..+|.
T Consensus        74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~  115 (155)
T 2efr_A           74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY  115 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556778888889999999999999888777555554444

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=96.56  E-value=0.021  Score=53.00  Aligned_cols=117  Identities=23%  Similarity=0.267  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhh
Q 007114          333 LRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKD  412 (617)
Q Consensus       333 LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~Isd  412 (617)
                      ...++..|+..|+.++.-|+-|......          -.+|+..||.||++....+..|.--.+..       .-+   
T Consensus        22 a~~kLeeaek~adE~eR~~k~lE~r~~~----------deEr~~~lE~qLkeak~~aeeadrKyeE~-------~RK---   81 (147)
T 2b9c_A           22 ALQKLEEAEKAADESERGMKVIESRAQK----------DEEKMEIQEIQLKEAKHIAEDADRKYEEV-------ARK---   81 (147)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcc----------cHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHH---
Confidence            3344455666666666666666433321          34577777887777766665554433322       222   


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhh
Q 007114          413 MENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDI  480 (617)
Q Consensus       413 MEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI  480 (617)
                          +.-+-..+.+||-||+.||.+|.       +|.+||...-..+.+||.+=.++...-...-..|
T Consensus        82 ----l~~~E~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I  138 (147)
T 2b9c_A           82 ----LVIIESDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEV  138 (147)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence                44455667799999999999998       5566777777777777766555444433333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.35  E-value=0.47  Score=45.93  Aligned_cols=145  Identities=18%  Similarity=0.167  Sum_probs=98.1

Q ss_pred             hhhHHHHhHHHHHHHHHHHHHhhcchHHHHhhhHHHHHHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007114          255 SFEQELLYTEEEAMDACERLFEAENSAEVLKGISKELLGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLR  334 (617)
Q Consensus       255 ~~eqe~~~lEE~~~~~~er~~EAENa~EvL~g~skel~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LK  334 (617)
                      +.+++..+.-+.+..+..++.+++.-..=|+.-|++|                 |.+|-.-|..+|++.+++.+-+..|+
T Consensus         7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrEL-----------------E~ELE~eL~~~Ek~~~~L~~~~~~L~   69 (189)
T 2v71_A            7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSREL-----------------EAELEAQLVQAEQRNRDLQADNQRLK   69 (189)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555666666666666666666666666666655                 56666667777777777777777777


Q ss_pred             HHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhH
Q 007114          335 ENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTV  410 (617)
Q Consensus       335 e~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~I  410 (617)
                      ..+..+..|..++-++.   ..+-..|..++..|+.    +..++..||-.--+++-+..++.+|.+-....+|...-.+
T Consensus        70 ~E~e~~k~K~~~~~~e~---~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~  146 (189)
T 2v71_A           70 YEVEALKEKLEHQYAQS---YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN  146 (189)
T ss_dssp             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            77777776666655442   2234456666666666    6667778888888888888888888888777777777777


Q ss_pred             hhhHHHHHH
Q 007114          411 KDMENLIQD  419 (617)
Q Consensus       411 sdMEnvIEe  419 (617)
                      .=||+=+++
T Consensus       147 alLE~El~E  155 (189)
T 2v71_A          147 AFLESELDE  155 (189)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665553

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.99  E-value=1.3  Score=57.09  Aligned_cols=70  Identities=13%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             hHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhh---hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 007114          448 LTEEISFLRDRLECLEASLHQAEETKLATAKDIG---IRTKVITNLVMQMAVERERLRQQISSLAMENKVMVV  517 (617)
Q Consensus       448 LneEL~fLksr~~~LE~~L~qa~~~K~stakdI~---~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~~  517 (617)
                      ...+|+.+..++..|+.++.++..+|..--.++.   .+-..-..|+..|+.|+.|=..++..+...-.-|+-
T Consensus      2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A         2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccH
Confidence            3455666666666676666666666655444443   344556789999999999999999888776555543

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.72  E-value=1  Score=43.87  Aligned_cols=81  Identities=15%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             HHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhh---hhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhh
Q 007114          406 LYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEAN---AGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGI  482 (617)
Q Consensus       406 l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN---~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~  482 (617)
                      +...++.+++-|.+++.++.+.+.       +...-+ +|   -.|..|+.+++.+...||..+..+.......-+.+.-
T Consensus        58 ~~~~~~~~e~~i~~~~~ri~~~~~-------~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~  129 (256)
T 3na7_A           58 LKLQVSKNEQTLQDTNAKIASIQK-------KMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQED  129 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455555555555555555443       332222 22   2466777777777777777776444444333333333


Q ss_pred             hhHHHHHHHHHH
Q 007114          483 RTKVITNLVMQM  494 (617)
Q Consensus       483 ~tK~i~dLv~QL  494 (617)
                      .+.-+.++-..|
T Consensus       130 ~~~~l~~~~~~l  141 (256)
T 3na7_A          130 LKKEMLELEKLA  141 (256)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.67  E-value=0.64  Score=44.45  Aligned_cols=132  Identities=16%  Similarity=0.209  Sum_probs=81.8

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114          371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne  450 (617)
                      .++|+..||+||.|.+..+..-.-++.-.+..+..+.-.++..|..+-||++++...++--...+..|+.|-..   |.+
T Consensus         4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~---L~q   80 (168)
T 3o0z_A            4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI---LEA   80 (168)
T ss_dssp             ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence            47899999999999999999888888888888888999999999999999998887776555555555444322   122


Q ss_pred             HHHhhH---hHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 007114          451 EISFLR---DRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVMV  516 (617)
Q Consensus       451 EL~fLk---sr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L~  516 (617)
                      |=....   ....+|+.++..+..+           -+-.+.--++...|+.+|+..|+.+=++..-+-
T Consensus        81 Er~~r~q~se~~~elq~ri~~L~~E-----------l~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           81 ERRDRGHDSEMIGDLQARITSLQEE-----------VKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            211100   0233344433322211           111223345566777788888888877666554

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.53  E-value=0.92  Score=58.53  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHH
Q 007114          371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTE  450 (617)
Q Consensus       371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLne  450 (617)
                      +++++..+|++++..+.+|..+.+.....++++..+..+....-.=.+.|+..+...+.|.+.|+.=..+|+..+.-=++
T Consensus      2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~ 2091 (3245)
T 3vkg_A         2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQ 2091 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHH
Confidence            67788888888888888888877777777777777776666666667778888888888888888888889888888888


Q ss_pred             HHHhhHhHHHHHHH
Q 007114          451 EISFLRDRLECLEA  464 (617)
Q Consensus       451 EL~fLksr~~~LE~  464 (617)
                      .+..|+.+...|=.
T Consensus      2092 ~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A         2092 QSENFNTQMSTVVG 2105 (3245)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccH
Confidence            88777776555533

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.48  E-value=1.3  Score=43.19  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=29.4

Q ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHH--HhHhhhHHHHHHHHHhhhhhh
Q 007114          371 TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLY--STVKDMENLIQDLKLKVSKAD  428 (617)
Q Consensus       371 lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~--S~IsdMEnvIEeLK~KvskAE  428 (617)
                      +...+..++.+++..+..+..+.+....++.+++...  -++..|..=|+.++..+..+|
T Consensus        51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE  110 (256)
T 3na7_A           51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQAN  110 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666666666666666666666665554322  123344444444444333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.35  E-value=0.49  Score=55.24  Aligned_cols=21  Identities=24%  Similarity=0.501  Sum_probs=13.1

Q ss_pred             hhhhccchhh---hhhhHHHHHHh
Q 007114           55 LHIACSSEKL---VNLNILTMHVA   75 (617)
Q Consensus        55 l~la~~SEKl---~NL~~l~M~l~   75 (617)
                      |=+-|+-|||   +|-++|.++-.
T Consensus       452 lcINy~NEkLQq~F~~~~f~~Eqe  475 (1080)
T 2dfs_A          452 FCINYANEKLQQQFNMHVFKLEQE  475 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHhhHHHHH
Confidence            4456777877   55566666543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.14  E-value=0.18  Score=43.84  Aligned_cols=67  Identities=18%  Similarity=0.155  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114          329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEA  398 (617)
Q Consensus       329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea  398 (617)
                      -+..||....+|..|+.+++.+++.+...+.++..++..   |+.|++.+|..|-.++.+|..|....+.
T Consensus        10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~s---L~kk~~~lE~eld~~ee~L~ea~~kLee   76 (101)
T 3u1c_A           10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQ---LEKQLRVTEDSRDQVLEELHKSEDSLLF   76 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788889999999999999999999998888887766   4678899999998888877776544443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.83  E-value=0.35  Score=56.44  Aligned_cols=77  Identities=13%  Similarity=0.180  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHh
Q 007114          316 LDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAY  395 (617)
Q Consensus       316 LkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~AS  395 (617)
                      +..|..+|.+.+..+..|.+.+...+   ...+.+|..|...+-+|.....+++.+..++..|++++.+.+.+++.+...
T Consensus       930 l~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke 1006 (1080)
T 2dfs_A          930 IMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006 (1080)
T ss_dssp             ---------------------CHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444433333   122344555554444554444444445555555555555555544444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.79  E-value=0.34  Score=50.87  Aligned_cols=120  Identities=18%  Similarity=0.107  Sum_probs=84.3

Q ss_pred             hHHHhHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHH----hhcchHHHHhhhHHHHHHhHHHHhhhcccchhchh
Q 007114          235 LEKKLTESRQVEEALKFRLGSFEQELLYTEEEAMDACERLF----EAENSAEVLKGISKELLGRLQIVLFNMNGSVQREA  310 (617)
Q Consensus       235 LEkkL~es~~~eeeLk~kL~~~eqe~~~lEE~~~~~~er~~----EAENa~EvL~g~skel~gkLq~~qf~L~as~~REs  310 (617)
                      |+..+.+.+.....|+.++...+.....+++.......++-    +-....+.+.-.-+.+..+.+..+..+.....+..
T Consensus       454 l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (597)
T 3oja_B          454 LEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD  533 (597)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence            55566666666777777777777777777766666555554    33444566777777777788888777777777777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114          311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL  354 (617)
Q Consensus       311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L  354 (617)
                      +.+.+++.++++...|+..+++-|+.+.+.....+....+.++|
T Consensus       534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888887777666655555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=93.63  E-value=0.72  Score=48.40  Aligned_cols=105  Identities=11%  Similarity=0.048  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114          320 VKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEA  398 (617)
Q Consensus       320 EeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea  398 (617)
                      ++.+..+++.+..|++.+...+...+....+.....+.-....+++...+. +.+.+..++......+..++......++
T Consensus       455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  534 (597)
T 3oja_B          455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADA  534 (597)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence            334444455555555555544444444444433332221111111111111 2222223333333333334444444445


Q ss_pred             HHHHHHhHHHhHhhhHHHHHHHHHhh
Q 007114          399 SLEKQNMLYSTVKDMENLIQDLKLKV  424 (617)
Q Consensus       399 ~~eeqn~l~S~IsdMEnvIEeLK~Kv  424 (617)
                      .++++..+..++..||..+++.|.++
T Consensus       535 ~~~~~~~~~~~~~~le~~~~~~~~~~  560 (597)
T 3oja_B          535 KQKETEDLEQENIALEKQLDNKRAKQ  560 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcchhhHHhhhHHHHHHHhhhhhHH
Confidence            55554444455555555555555433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=93.20  E-value=4.5  Score=39.18  Aligned_cols=71  Identities=24%  Similarity=0.181  Sum_probs=25.9

Q ss_pred             HHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q 007114          437 KLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNLVMQMAVERERLRQQISSLAMENKVM  515 (617)
Q Consensus       437 kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dLv~QLa~ErErL~~Qissl~~eNk~L  515 (617)
                      ++..|--.|-.|..-.-...+.+.++|.+|.+|-...+=-=-||.-        -.+|..+.+||...+.-|..+..++
T Consensus       110 ~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E--------Ke~l~~~~QRLkdE~rDLk~El~v~  180 (189)
T 2v71_A          110 YVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE--------KESLLVSVQRLKDEARDLRQELAVR  180 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHCCC-----------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555555555555666666666555444332222220        1244455556655555555554443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.73  E-value=1.7  Score=37.44  Aligned_cols=66  Identities=21%  Similarity=0.261  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114          329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE  397 (617)
Q Consensus       329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae  397 (617)
                      -+..||....+|..||.+++.+++.+...+.++..++..   ++.|+..||.++-.++.++..+....+
T Consensus        10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~s---L~kKiq~lE~eld~~~e~l~~a~~kLe   75 (101)
T 3u59_A           10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQG---LQKKLKGTEDEVEKYSESVKEAQEKLE   75 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788899999999999999999999988888877666   466888888888877777665554433

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=92.62  E-value=3.9  Score=37.89  Aligned_cols=142  Identities=24%  Similarity=0.227  Sum_probs=74.9

Q ss_pred             HHhHHHHhhhcccchhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhh
Q 007114          292 LGRLQIVLFNMNGSVQREAGLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRAT  371 (617)
Q Consensus       292 ~gkLq~~qf~L~as~~REsel~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~l  371 (617)
                      .-|++.++-+|.-+.-|=.....||..+++-...-+.....|       |+|....+-++..|.   .+|++-..-.++.
T Consensus         2 ~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~l-------E~r~~~deEr~~~lE---~qLkeak~~aeea   71 (147)
T 2b9c_A            2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVI-------ESRAQKDEEKMEIQE---IQLKEAKHIAEDA   71 (147)
T ss_dssp             ---------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhcccHHHHHHHH---HHHHHHHHHHHHH
Confidence            457777888887777776666777766655554333332222       344444444444442   1222222222233


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHH
Q 007114          372 SEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSE  443 (617)
Q Consensus       372 sEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtE  443 (617)
                      -.|..-..++|.-.+-.|..|..-+++...+.-.+..+|..+-+-+..|.-.-.+|=-|-+.+|.+...|++
T Consensus        72 drKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~~  143 (147)
T 2b9c_A           72 DRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKK  143 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444444444444444566668888888888888888888888889998888875

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=92.36  E-value=8  Score=36.99  Aligned_cols=110  Identities=17%  Similarity=0.202  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHh--hhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHH
Q 007114          314 SKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVR--CKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQH  391 (617)
Q Consensus       314 sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aesk--c~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~  391 (617)
                      +|.-+||+||.++......--+.  -|..|-+++|..  ...+...|-+|.+.+..|..   .-..||+++.....||..
T Consensus         6 eKi~~LekQL~E~n~kLk~EsE~--~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~---~k~~Leke~~~LQa~L~q   80 (168)
T 3o0z_A            6 EKLSQLQKQLEEANDLLRTESDT--AVRLRKSHTEMSKSISQLESLNRELQERNRILEN---SKSQTDKDYYQLQAILEA   80 (168)
T ss_dssp             ----CTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            45556777777553332221111  122222333322  23344444444444444333   233567777777777776


Q ss_pred             HHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhh
Q 007114          392 AVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKAD  428 (617)
Q Consensus       392 A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAE  428 (617)
                      -+...-...+-+..+...|..|..=++.+|....+++
T Consensus        81 Er~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~  117 (168)
T 3o0z_A           81 ERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE  117 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665554444433344444444444444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.30  E-value=5.9  Score=35.37  Aligned_cols=60  Identities=20%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             hhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHH
Q 007114          431 ADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEETKLATAKDIGIRTKVITNL  490 (617)
Q Consensus       431 Ae~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~~K~stakdI~~~tK~i~dL  490 (617)
                      +..||..|..|.....+|...|.-+.+|+...|.....+...|-..=.++.-.++-|.|+
T Consensus        64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~  123 (129)
T 2fxo_A           64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL  123 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567888888888888888888888888888888877777776666666555555554

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.24  E-value=2.4  Score=36.54  Aligned_cols=82  Identities=12%  Similarity=0.187  Sum_probs=58.2

Q ss_pred             hhhhhhhhh----hhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHH
Q 007114          362 NEDLKGSRA----TSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEK  437 (617)
Q Consensus       362 ~~el~~Lk~----lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~k  437 (617)
                      +.++..|+.    ..+++..+|.+++..+.....+-....+.+-+...+...+-..+.-..+.+.++-.++.++..||..
T Consensus         8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~e   87 (101)
T 3u59_A            8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAE   87 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555    6788889999999888887777777777766655566666666666666667777777777777777


Q ss_pred             HhhHHH
Q 007114          438 LIILSE  443 (617)
Q Consensus       438 c~~LtE  443 (617)
                      ...|+-
T Consensus        88 vasLnR   93 (101)
T 3u59_A           88 VASLNR   93 (101)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=90.10  E-value=7.3  Score=33.72  Aligned_cols=55  Identities=33%  Similarity=0.314  Sum_probs=49.0

Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114          417 IQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE  471 (617)
Q Consensus       417 IEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~  471 (617)
                      |.-||...-+|.-||+.++.+++.+...+.++.+|+..|.-|+..||..|..++.
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee   65 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE   65 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677888888999999999999999999999999999999999999999886654

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=89.87  E-value=2.9  Score=34.77  Aligned_cols=66  Identities=24%  Similarity=0.280  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114          329 VIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE  397 (617)
Q Consensus       329 ~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae  397 (617)
                      -+..||....+|..|+.+++.+++.....+.++..++..   ++.|+..||..+-.++.+|..|..--+
T Consensus         7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~---L~kKiq~lE~eld~~ee~l~~a~~kLe   72 (81)
T 1ic2_A            7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVA---LQKKLKGTEDELDKYSESLKDAQEKLE   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788888888899999988888887777777766554   577899999999888888877765443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=87.04  E-value=16  Score=32.55  Aligned_cols=110  Identities=21%  Similarity=0.289  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHhHh
Q 007114          332 SLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYSTVK  411 (617)
Q Consensus       332 ~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~Is  411 (617)
                      .+.+.+...+.+....+...+.|...+..|..+.+.|.                 .||+..........+....+...=.
T Consensus        17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~-----------------~qL~~E~~~l~e~EE~~~~L~~~k~   79 (129)
T 2fxo_A           17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQ-----------------LQVQAEQDNLADAEERCDQLIKNKI   79 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34444444444555555566666655555555544433                 3344333333333333333444444


Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHH
Q 007114          412 DMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEAS  465 (617)
Q Consensus       412 dMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~  465 (617)
                      +||..|.++.+       |-+.-|..+..|+..--+|.+++.-|+..+.++|..
T Consensus        80 eLe~~l~el~~-------rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~  126 (129)
T 2fxo_A           80 QLEAKVKEMNK-------RLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELT  126 (129)
T ss_dssp             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555544       444445566666766777777777777777766643

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=86.83  E-value=6.4  Score=40.47  Aligned_cols=74  Identities=28%  Similarity=0.325  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhh-hhHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 007114          325 VKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRA-TSEKVESLERQLRESDIQLQHAVAYAEA  398 (617)
Q Consensus       325 ~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~-lsEKv~sLEkQLkEse~QL~~A~ASaea  398 (617)
                      +..|+..-|.++|.+++....+++.+.---..|=+-|...|+-=++ ...|++.||.++++.+-+++++.|..+.
T Consensus       394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (471)
T 3mq9_A          394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER  468 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777788888888888888888777777777777776665444 4468899999999999988888876654

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.80  E-value=20  Score=33.82  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=19.3

Q ss_pred             hHHHhHHHHHHHHHHHhhhhhhhHHHHhH
Q 007114          235 LEKKLTESRQVEEALKFRLGSFEQELLYT  263 (617)
Q Consensus       235 LEkkL~es~~~eeeLk~kL~~~eqe~~~l  263 (617)
                      |=.||..|-...-.|...|+.+.++....
T Consensus         4 LStKLI~Ain~qs~LeD~L~~~R~el~~~   32 (154)
T 2ocy_A            4 LSTQLIESVDKQSHLEEQLNKSLKTIASQ   32 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            44567777777777777777777665443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=85.28  E-value=10  Score=33.75  Aligned_cols=108  Identities=11%  Similarity=0.165  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHh
Q 007114          330 IASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYST  409 (617)
Q Consensus       330 ~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~  409 (617)
                      +++|+..+..-......+..++..|..+--.|..+|+.+++.   -.+||.+|.+.+.+...+...          +...
T Consensus        17 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~---~~~LE~~l~e~e~~~~~~l~~----------~q~~   83 (129)
T 3tnu_B           17 YEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQ---CANLQNAIADAEQRGELALKD----------ARNK   83 (129)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence            445555554444444555556555555555556666555543   456777777766654332222          2223


Q ss_pred             HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114          410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD  457 (617)
Q Consensus       410 IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks  457 (617)
                      |.++|.-+..+|....       .--.+...|-...+.|.-|++.||.
T Consensus        84 i~~lE~eL~~~r~e~~-------~ql~EYq~LlnvKl~Ld~EIatYRk  124 (129)
T 3tnu_B           84 LAELEEALQKAKQDMA-------RLLREYQELMNTKLALDVEIATYRK  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444332       2234667788888889999999874

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=83.75  E-value=6.9  Score=32.89  Aligned_cols=64  Identities=16%  Similarity=0.181  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHH
Q 007114          312 LRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESL  378 (617)
Q Consensus       312 l~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sL  378 (617)
                      +-.||+.+|..=.+|+--+.+|+.++..+.++-.....+.+.+.   -.|..+|.+|.+++..+..|
T Consensus         5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~---e~Ld~KI~eL~elrq~LakL   68 (72)
T 3cve_A            5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL---EILDGKIFELTELRDNLAKL   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHh
Confidence            44566666655556666666666666666666666666666664   45999999999998888764

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.46  E-value=10  Score=33.84  Aligned_cols=108  Identities=18%  Similarity=0.255  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhHHHh
Q 007114          330 IASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNMLYST  409 (617)
Q Consensus       330 ~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~l~S~  409 (617)
                      +++|+..+..-......+..++..|..+--.|..+|+.+++.   -.+||.+|.+.+.+...+...          +...
T Consensus        19 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~---~~sLE~~l~e~e~~~~~~l~~----------~q~~   85 (131)
T 3tnu_A           19 TEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSM---KASLENSLEETKGRYCMQLAQ----------IQEM   85 (131)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence            444554444444444455555555555545555555555443   356777777766654433222          2223


Q ss_pred             HhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHh
Q 007114          410 VKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRD  457 (617)
Q Consensus       410 IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLks  457 (617)
                      |.++|.-+..+|.....       --.+...|-...+.|.-|++.||.
T Consensus        86 i~~lE~eL~~~r~em~~-------ql~EYq~Ll~vKl~Ld~EIatYRk  126 (131)
T 3tnu_A           86 IGSVEEQLAQLRCEMEQ-------QNQEYKILLDVKTRLEQEIATYRR  126 (131)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555545444443322       234667788888889999999874

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=83.34  E-value=18  Score=39.10  Aligned_cols=92  Identities=14%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHh
Q 007114          326 KESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAEASLEKQNM  405 (617)
Q Consensus       326 len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASaea~~eeqn~  405 (617)
                      .+..+++||..+.+.+.+...++--.+.|...          ++....++...+..++++...++.-.+......  ...
T Consensus        98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s----------lk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~--~~~  165 (464)
T 1m1j_B           98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNK----------LVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL--DNN  165 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTH
T ss_pred             hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----------hhcccccccchhhHHHHHHHHHHHHHHHHHHHH--hcc
Confidence            44445555555555555544444444433221          222333444444455555544444333332211  111


Q ss_pred             HHHhHhhhHHHHHHHHHhhhhhhh
Q 007114          406 LYSTVKDMENLIQDLKLKVSKADS  429 (617)
Q Consensus       406 l~S~IsdMEnvIEeLK~KvskAES  429 (617)
                      .-+.|+.++.+++.++.|+.+-|+
T Consensus       166 ~~~~i~~L~~~~~~l~~ki~~l~~  189 (464)
T 1m1j_B          166 IPSSLRVLRAVIDSLHKKIQKLEN  189 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHH
Confidence            234455555555555554444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.21  E-value=8.4  Score=34.02  Aligned_cols=44  Identities=18%  Similarity=0.368  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhh
Q 007114          311 GLRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSL  354 (617)
Q Consensus       311 el~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~L  354 (617)
                      .++..+..|+.++.+.+..+..|+..+.+...+-..||.++..+
T Consensus         9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~i   52 (97)
T 2eqb_B            9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKL   52 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777778888888777777778777777666666666665544

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.74  E-value=5  Score=36.74  Aligned_cols=51  Identities=25%  Similarity=0.285  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHh
Q 007114          312 LRSKLDSLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELN  362 (617)
Q Consensus       312 l~sKLkslEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~  362 (617)
                      ++.+...++.++++++..+.+||.++..+.-+..++..+...|.+-+-+|.
T Consensus        73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~  123 (138)
T 3hnw_A           73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ  123 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566888999999999999999999998888888888777744443333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=81.38  E-value=8.8  Score=31.82  Aligned_cols=55  Identities=31%  Similarity=0.343  Sum_probs=36.9

Q ss_pred             HHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHHH
Q 007114          417 IQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAEE  471 (617)
Q Consensus       417 IEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~~  471 (617)
                      |.-||...-.|..|++.++.++......+.++.+|+..|.-|+..||..|..++.
T Consensus         8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee   62 (81)
T 1ic2_A            8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE   62 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666667777777777777777777777777777777777765543

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.56  E-value=19  Score=39.92  Aligned_cols=136  Identities=9%  Similarity=0.029  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhhhhHHhhHHHhhhhhhhhhhhHHHHHHHHHHHHhHHHHHHHHHhHH
Q 007114          318 SLVKQVEVKESVIASLRENLSEAQARADGAEVRCKSLAETNIELNEDLKGSRATSEKVESLERQLRESDIQLQHAVAYAE  397 (617)
Q Consensus       318 slEeqL~~len~~e~LKe~i~~AEsra~~aeskc~~LteTN~eL~~el~~Lk~lsEKv~sLEkQLkEse~QL~~A~ASae  397 (617)
                      .|-+|=+++.+.|++||.++.+-+..-..+++-.+.+          .+.|+.-....+..++-..++-..|+.-....+
T Consensus        54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~----------~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLK  123 (562)
T 3ghg_A           54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNI----------MEILRGDFSSANNRDNTYNRVSEDLRSRIEVLK  123 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----------HHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHH----------HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence            4556666888888888888877644444444443333          334444333333444444444434443333222


Q ss_pred             HHHHHHHhHHHhHhhhHHHHHHHHHhhhhhhhhhhhHHHHHhhHHHhhhhhHHHHHhhHhHHHHHHHHHHHHH
Q 007114          398 ASLEKQNMLYSTVKDMENLIQDLKLKVSKADSRADSAEEKLIILSEANAGLTEEISFLRDRLECLEASLHQAE  470 (617)
Q Consensus       398 a~~eeqn~l~S~IsdMEnvIEeLK~KvskAESRAe~AE~kc~~LtEtN~eLneEL~fLksr~~~LE~~L~qa~  470 (617)
                         ++.+.-.+.|+-|+++|+++..|+.+.|.-.+..-.-|+.==..+++-.=++..|    +.+|++|.|+.
T Consensus       124 ---ekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY----~~~QKQLeQv~  189 (562)
T 3ghg_A          124 ---RKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDY----EDQQKQLEQVI  189 (562)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHH----HHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHH----HHHHHHHHHHh
Confidence               2222233779999999999999999999988888888887655555555555555    46788887665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00