Citrus Sinensis ID: 007134
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 616 | 2.2.26 [Sep-21-2011] | |||||||
| A8MQA3 | 595 | Pentatricopeptide repeat- | yes | no | 0.935 | 0.968 | 0.651 | 0.0 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.925 | 0.916 | 0.422 | 1e-138 | |
| Q9ZVF4 | 584 | Pentatricopeptide repeat- | no | no | 0.941 | 0.993 | 0.426 | 1e-137 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.905 | 0.863 | 0.406 | 1e-136 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.905 | 0.911 | 0.411 | 1e-133 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.938 | 0.898 | 0.392 | 1e-133 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.954 | 0.975 | 0.406 | 1e-133 | |
| Q9SN85 | 591 | Pentatricopeptide repeat- | no | no | 0.920 | 0.959 | 0.428 | 1e-133 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.925 | 0.919 | 0.402 | 1e-132 | |
| Q0WQW5 | 638 | Pentatricopeptide repeat- | no | no | 0.952 | 0.920 | 0.428 | 1e-131 |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/582 (65%), Positives = 477/582 (81%), Gaps = 6/582 (1%)
Query: 41 VVRKCITLLQVCA-SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAH 97
+V KCI LLQ SS KL+Q+HAFSIRHGV +++ +LGK+LI+ +VSL P MSYAH
Sbjct: 14 MVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73
Query: 98 NIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISK 155
+FS ++ P N+F WNT+IRGYAE N + A LY +M VSG ++PDTHTYPFL+KA++
Sbjct: 74 KVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTT 133
Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
+ADVR+GE HSV IR+GF SL++VQNSL+H+YA G V A KVF+ M E+DLVAWNSV
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193
Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
INGFA NGKP EAL L+ EM S+G++PDG+T+VSL SACA++GAL LG+R H Y+ KVGL
Sbjct: 194 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 253
Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
+ N++ +N LLD Y++CG + A+ +F EM +N+VSW++L+VGLAVNGFGKEA+ELFK
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 313
Query: 336 ME-IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
ME G +P E+TFVG+LYACSHCGMV EGF YF+RM++EY I P+IEHFGCMVDLL RA
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373
Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
G VK+AYEYI++M M PN VIWRTLLGACT+HG S +AE AR +LQLEP HSGDYVLLS
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLS 433
Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
N+YA EQRW +VQ++R+ M+++ VKK PGHSLVE+GNRV EF MGD+SHPQ++ I+A L
Sbjct: 434 NMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLK 493
Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
E+T +L+ EGYVP+ NV+ D+EEEEKE+A+ YHSEKIAIAFML++T +P+ VVKNLR
Sbjct: 494 EMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLR 553
Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
VCADCHLAIKL+SKVY+REIVVRDRSRFHHFK+G CSC+DYW
Sbjct: 554 VCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/608 (42%), Positives = 380/608 (62%), Gaps = 38/608 (6%)
Query: 46 ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-----MSYAHNIF 100
+ LLQ C SS LK +H F +R + + + L + +F + YA+ IF
Sbjct: 16 LALLQSC-SSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIF 74
Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
S +Q+PN+F +N +IR ++ A P A Y++M S I PD T+PFL+KA S++ V
Sbjct: 75 SQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134
Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV----- 215
+GEQTHS +R GF++ V+V+NSLVHMYA G + A ++F M RD+V+W S+
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194
Query: 216 --------------------------INGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249
ING+A N +A+ LF M EGV + MVS
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254
Query: 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309
+ S+CA LGAL G RA+ YV K ++ N+ + AL+D + +CG I A VF + + +
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314
Query: 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369
++SWS+++ GLAV+G +A+ F +M GF+P +VTF VL ACSH G+V++G ++
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374
Query: 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHS 429
MK ++GI P++EH+GC+VD+LGRAG + +A +I M + PNA I LLGAC I+ ++
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434
Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
+AE + L++++P+HSG YVLLSN+YA +W ++ +R M ++ VKK PG SL+E+
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494
Query: 490 GNRVFEFFMG-DRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
++ +F MG D+ HP+ +I EI K++L GY T + F D++EEEKE ++ H
Sbjct: 495 DGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMH 554
Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
SEK+AIA+ ++ T PGT +R+VKNLRVC DCH KLIS+VY RE++VRDR+RFHHF++G
Sbjct: 555 SEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNG 614
Query: 609 HCSCRDYW 616
CSCRDYW
Sbjct: 615 VCSCRDYW 622
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 250/586 (42%), Positives = 359/586 (61%), Gaps = 6/586 (1%)
Query: 33 SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
+++ P+T + LL+ +S +LK++HA +R G N L + L +V
Sbjct: 3 AKQTPLTKQMLS--ELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGD-- 58
Query: 93 MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
M YA +F + P IF WNT+ +GY + P ++ LY KM G++PD TYPF++KA
Sbjct: 59 MCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKA 118
Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
IS+L D G H+ ++ GF L V LV MY FG + A +FE M +DLVAW
Sbjct: 119 ISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAW 178
Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272
N+ + G AL F +M ++ V+ D +T+VS+ SAC +LG+L +G + K
Sbjct: 179 NAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARK 238
Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
+ N+ V NA LD + KCG AA+ +F EM++RN VSWST++VG A+NG +EAL L
Sbjct: 239 EEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTL 298
Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM--KDEYGIMPKIEHFGCMVDL 390
F M+ G P VTF+GVL ACSH G+V+EG YF M ++ + P+ EH+ CMVDL
Sbjct: 299 FTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDL 358
Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
LGR+GL+++AYE+I+ M + P+ IW LLGAC +H + + L++ P +
Sbjct: 359 LGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYH 418
Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
VLLSN+YA +W V +VR M K KK +S VE ++ F GD+SHPQ++ I+
Sbjct: 419 VLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIY 478
Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
L EI KK++ GYVP T +VF D+E EEKE +LS+HSEK+AIAF L+ PG P+RV+
Sbjct: 479 EKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVM 538
Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
KNLR C DCH K +S + S EI++RD++RFHHF++G CSC+++W
Sbjct: 539 KNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 484 bits (1247), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/608 (40%), Positives = 367/608 (60%), Gaps = 50/608 (8%)
Query: 59 LKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL--SFPMSYAHNIFSHVQDPNIFTWNTMIR 116
L Q+HA I+ G + + L + S + YAH IF+ + N F+WNT+IR
Sbjct: 39 LSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIR 98
Query: 117 GYAESA--NPLLAVEL-YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG 173
G++ES L+A+ L Y M ++P+ T+P +LKA +K ++ G+Q H +A++ G
Sbjct: 99 GFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYG 158
Query: 174 FESLVFVQNSLVHMYAAFGHVKDA------------------------------------ 197
F FV ++LV MY G +KDA
Sbjct: 159 FGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGY 218
Query: 198 -----CK----VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV 248
CK +F+ M +R +V+WN++I+G++ NG +A+ +FREM + P+ T+V
Sbjct: 219 MRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLV 278
Query: 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308
S+ A + LG+L LG H Y G+ + + +AL+D YSKCGII A VF + +
Sbjct: 279 SVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE 338
Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368
N ++WS ++ G A++G +A++ F +M G P +V ++ +L ACSH G+V+EG YF
Sbjct: 339 NVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYF 398
Query: 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428
+M G+ P+IEH+GCMVDLLGR+GL+ +A E+I NM + P+ VIW+ LLGAC + G+
Sbjct: 399 SQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGN 458
Query: 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
+ + + L+ + P SG YV LSN+YA + W V E+R M ++ ++K PG SL++
Sbjct: 459 VEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLID 518
Query: 489 LGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYH 548
+ + EF + D SHP+ +EI++ML EI+ KL+L GY P T V ++EEE+KE+ L YH
Sbjct: 519 IDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYH 578
Query: 549 SEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDG 608
SEKIA AF L++T+PG P+R+VKNLR+C DCH +IKLISKVY R+I VRDR RFHHF+DG
Sbjct: 579 SEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDG 638
Query: 609 HCSCRDYW 616
CSC DYW
Sbjct: 639 SCSCMDYW 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/593 (41%), Positives = 359/593 (60%), Gaps = 35/593 (5%)
Query: 58 KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRG 117
+++Q+HA G ++ +G ++ +S + YA+ I + P +F N+MIR
Sbjct: 21 EVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRA 80
Query: 118 YAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE 175
+ +S P + + Y ++ SG +KPD +T FL++A + L G Q H + IR GF+
Sbjct: 81 HCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFD 140
Query: 176 SLVFVQNSLVHMYAAFGHVKDAC--------------------------------KVFEL 203
+ VQ L+ +YA G + D+C K+FE
Sbjct: 141 NDPHVQTGLISLYAELGCL-DSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEG 199
Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263
M ERD +AWN++I+G+A G+ EAL +F M EGV+ +G M+S+ SAC +LGAL G
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259
Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
R AH+Y+ + + V + L+D Y+KCG + A VF M ++N +WS+ + GLA+N
Sbjct: 260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319
Query: 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383
GFG++ LELF M+ G P VTFV VL CS G VDEG +F M++E+GI P++EH
Sbjct: 320 GFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEH 379
Query: 384 FGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443
+GC+VDL RAG ++ A IQ M M P+A +W +LL A ++ + + +A +L+LE
Sbjct: 380 YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELE 439
Query: 444 PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSH 503
+ G YVLLSN+YA W NV VR++M + V+K PG S++E+ V EFF+GD+SH
Sbjct: 440 TANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 499
Query: 504 PQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAP 563
P+ +I A+ +I+++L+L GY T V DI+EEEKEDAL HSEK AIAF +++
Sbjct: 500 PKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKE 559
Query: 564 GTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
P+R+VKNLRVC DCH +ISK+++REI+VRDR+RFHHFKDGHCSC +W
Sbjct: 560 DVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/644 (39%), Positives = 380/644 (59%), Gaps = 66/644 (10%)
Query: 38 ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
+T + C++LL C + + L Q+H I++GV ++ GK +++ +S+S + YA
Sbjct: 1 MTIAIHHCLSLLNSCKNLR-ALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYAR 59
Query: 98 NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKL 156
+ +P+ F +NT++RGY+ES P +V ++ +M G + PD+ ++ F++KA+
Sbjct: 60 RLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENF 119
Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
+R G Q H A+++G ES +FV +L+ MY G V+ A KVF+ M + +LVAWN+VI
Sbjct: 120 RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVI 179
Query: 217 N-------------------------------GFASNGKPNEALTLFREM---------- 235
G+ G+ A +F EM
Sbjct: 180 TACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239
Query: 236 ---------------------ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274
G+ P+ ++ + SAC++ G+ G+ H +V K G
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELF 333
S V+VNNAL+D YS+CG + A+ VF M+ KR VSW++++ GLA++G G+EA+ LF
Sbjct: 300 YSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF 359
Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
EM G P ++F+ +L+ACSH G+++EG YF MK Y I P+IEH+GCMVDL GR
Sbjct: 360 NEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGR 419
Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
+G +++AY++I M +PP A++WRTLLGAC+ HG+ +AE + L +L+P +SGD VLL
Sbjct: 420 SGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLL 479
Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
SN YA +W +V +R++M+ +R+KKT SLVE+G +++F G++ E H L
Sbjct: 480 SNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKL 539
Query: 514 AEITKKLKLE-GYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKN 572
EI +LK E GY P + D+EEEEKED +S HSEK+A+AF L + G +R+VKN
Sbjct: 540 KEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKN 599
Query: 573 LRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
LR+C DCH +KL SKVY EI+VRDR+RFH FKDG CSCRDYW
Sbjct: 600 LRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/591 (40%), Positives = 367/591 (62%), Gaps = 3/591 (0%)
Query: 28 HSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV 87
H+ ++ + I +V + LL +S +L Q+ A++I+ + + + K + +
Sbjct: 14 HAETFTKHSKIDTVNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTE 72
Query: 88 S-LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTY 146
S MSYA ++F + +P+I +N+M RGY+ NPL L+ ++ GI PD +T+
Sbjct: 73 SPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTF 132
Query: 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206
P LLKA + + G Q H ++++ G + V+V +L++MY V A VF+ + E
Sbjct: 133 PSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVE 192
Query: 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266
+V +N++I G+A +PNEAL+LFREM + ++P+ T++S+ S+CA LG+L LG+
Sbjct: 193 PCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWI 252
Query: 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFG 326
H Y K V VN AL+D ++KCG + A +F +MR ++ +WS ++V A +G
Sbjct: 253 HKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKA 312
Query: 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386
++++ +F+ M P E+TF+G+L ACSH G V+EG YF +M ++GI+P I+H+G
Sbjct: 313 EKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGS 372
Query: 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446
MVDLL RAG ++ AYE+I + + P ++WR LL AC+ H + +AE + +L+ H
Sbjct: 373 MVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSH 432
Query: 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506
GDYV+LSNLYA ++W V +R+ M + K PG S +E+ N V EFF GD T
Sbjct: 433 GGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSAT 492
Query: 507 EEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLVNTAPGT 565
++H L E+ K+LKL GYVP T V A++ ++EKE L YHSEK+AI F L+NT PGT
Sbjct: 493 TKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGT 552
Query: 566 PVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
+RVVKNLRVC DCH A KLIS ++ R++V+RD RFHHF+DG CSC D+W
Sbjct: 553 TIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 475 bits (1222), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/576 (42%), Positives = 353/576 (61%), Gaps = 9/576 (1%)
Query: 49 LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAHNIFSHVQDP 106
L V ++ K L+Q+HA +R + N+ +L +SL P ++Y+ +FS +P
Sbjct: 17 LIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSL-IPRDINYSCRVFSQRLNP 75
Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKLADVRMGEQT 165
+ NTMIR ++ S P L+ + S + + + F LK K D+ G Q
Sbjct: 76 TLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQI 135
Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
H +GF S + +L+ +Y+ + DACKVF+ + +RD V+WN + + + N +
Sbjct: 136 HGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRT 195
Query: 226 NEALTLFREMASE---GVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282
+ L LF +M ++ V+PDG T + ACA LGAL G++ H ++ + GLS +N++
Sbjct: 196 RDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLS 255
Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
N L+ YS+CG + A +VF MR+RN VSW+ L+ GLA+NGFGKEA+E F EM G
Sbjct: 256 NTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGIS 315
Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
P E T G+L ACSH G+V EG +F RM+ E+ I P + H+GC+VDLLGRA L+ +AY
Sbjct: 316 PEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAY 375
Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
I++M M P++ IWRTLLGAC +HG + E S L++L+ + +GDYVLL N Y+
Sbjct: 376 SLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVG 435
Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
+W V E+R M ++R+ PG S +EL V EF + D SHP+ EEI+ MLAEI ++LK
Sbjct: 436 KWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLK 495
Query: 522 LEGYVPRTENVFADIE-EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
+ GYV + ++E EEEK AL YHSEK+AIAF ++ T PGT +RV KNLR C DCH
Sbjct: 496 IAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCH 555
Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
K +S VY R ++VRDRSRFHHFK G CSC D+W
Sbjct: 556 NFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 243/604 (40%), Positives = 360/604 (59%), Gaps = 34/604 (5%)
Query: 46 ITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP-MSYAHNIFSHVQ 104
++ LQ C S + +LKQ+HA ++ G+ ++ + K+L + I S S + YA +F
Sbjct: 18 MSCLQRC-SKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFD 76
Query: 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164
P+ F WN MIRG++ S P ++ LY +M S + +T+P LLKA S L+ Q
Sbjct: 77 RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ 136
Query: 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGK 224
H+ + G+E+ V+ NSL++ YA G+ K A +F+ + E D V+WNSVI G+ GK
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196
Query: 225 PNEALTLFREMASEG-------------------------------VEPDGYTMVSLFSA 253
+ ALTLFR+MA + VEPD ++ + SA
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSA 256
Query: 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSW 313
CA+LGAL G+ H+Y+ K + + + L+D Y+KCG + A VF+ ++K++ +W
Sbjct: 257 CAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAW 316
Query: 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373
+ L+ G A +G G+EA+ F EM+ G P +TF VL ACS+ G+V+EG F M+
Sbjct: 317 TALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMER 376
Query: 374 EYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAE 433
+Y + P IEH+GC+VDLLGRAGL+ +A +IQ M + PNAVIW LL AC IH + + E
Sbjct: 377 DYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGE 436
Query: 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRV 493
L+ ++P H G YV +N++A +++W E RR M ++ V K PG S + L
Sbjct: 437 EIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTT 496
Query: 494 FEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD-IEEEEKEDALSYHSEKI 552
EF GDRSHP+ E+I + + +KL+ GYVP E + D ++++E+E + HSEK+
Sbjct: 497 HEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKL 556
Query: 553 AIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSC 612
AI + L+ T PGT +R++KNLRVC DCH KLISK+Y R+IV+RDR+RFHHF+DG CSC
Sbjct: 557 AITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSC 616
Query: 613 RDYW 616
DYW
Sbjct: 617 GDYW 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust.
Identities = 261/609 (42%), Positives = 371/609 (60%), Gaps = 22/609 (3%)
Query: 28 HSTPASQENPITSVV--RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYA 85
H PAS + T+ ++ +L + C S +LKQ+HAF++R P L Y
Sbjct: 32 HIPPASSPSASTAGNHHQRIFSLAETC-SDMSQLKQLHAFTLRTTYPEEPATLFLYGKIL 90
Query: 86 IVSLSFP-MSYAHNIFSHVQDPNIFTWNTMIRGYA-ESANPLLAVELYSKMHVSG-IKPD 142
+S SF ++YA +F +++ + F WNT+IR A + + A LY KM G PD
Sbjct: 91 QLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPD 150
Query: 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE 202
HT+PF+LKA + + G+Q H +++GF V+V N L+H+Y + G + A KVF+
Sbjct: 151 KHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFD 210
Query: 203 LMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262
M ER LV+WNS+I+ G+ + AL LFREM EPDGYTM S+ SACA LG+L+L
Sbjct: 211 EMPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSL 269
Query: 263 GRRAHTYVWK---VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVG 319
G AH ++ + V ++ +V V N+L++ Y KCG + A++VF+ M+KR+ SW+ +++G
Sbjct: 270 GTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILG 329
Query: 320 LAVNGFGKEALELFKEM--EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI 377
A +G +EA+ F M + P VTFVG+L AC+H G V++G YF M +Y I
Sbjct: 330 FATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCI 389
Query: 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA--IAEIA 435
P +EH+GC+VDL+ RAG + +A + + +M M P+AVIWR+LL AC G S EIA
Sbjct: 390 EPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIA 449
Query: 436 RSTLLQLEPKHS------GDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVEL 489
R+ + E S G YVLLS +YA RW +V VR+ M + ++K PG S +E+
Sbjct: 450 RNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEI 509
Query: 490 GNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVP-RTENVFADIEEE-EKEDALSY 547
EFF GD SHPQT++I+ L I +L+ GY+P R++ D + KE +L
Sbjct: 510 NGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRL 569
Query: 548 HSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKD 607
HSE++AIAF L+N P TP+R+ KNLRVC DCH KLISKV++ EI+VRDR RFHHFKD
Sbjct: 570 HSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKD 629
Query: 608 GHCSCRDYW 616
G CSC DYW
Sbjct: 630 GSCSCLDYW 638
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 616 | ||||||
| 359483655 | 613 | PREDICTED: pentatricopeptide repeat-cont | 0.991 | 0.996 | 0.743 | 0.0 | |
| 356546516 | 591 | PREDICTED: pentatricopeptide repeat-cont | 0.943 | 0.983 | 0.745 | 0.0 | |
| 449434238 | 609 | PREDICTED: pentatricopeptide repeat-cont | 0.939 | 0.950 | 0.710 | 0.0 | |
| 449490721 | 609 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.939 | 0.950 | 0.708 | 0.0 | |
| 356557795 | 661 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.939 | 0.875 | 0.692 | 0.0 | |
| 145333528 | 595 | pentatricopeptide repeat-containing prot | 0.935 | 0.968 | 0.651 | 0.0 | |
| 297804050 | 595 | binding protein [Arabidopsis lyrata subs | 0.935 | 0.968 | 0.651 | 0.0 | |
| 5262797 | 1495 | putative protein (fragment) [Arabidopsis | 0.910 | 0.375 | 0.647 | 0.0 | |
| 297740786 | 1434 | unnamed protein product [Vitis vinifera] | 0.702 | 0.301 | 0.777 | 0.0 | |
| 115470597 | 592 | Os07g0150000 [Oryza sativa Japonica Grou | 0.925 | 0.962 | 0.568 | 0.0 |
| >gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/613 (74%), Positives = 521/613 (84%), Gaps = 2/613 (0%)
Query: 6 MHSKQPSYEEI--SDLPCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVH 63
MHS Q + + + P + S ST E+P + +++KCI LL CASSK K +Q+H
Sbjct: 1 MHSNQLGRQPLIPTHSPRKHFSFTISTSTCPESPKSYILKKCIALLLSCASSKFKFRQIH 60
Query: 64 AFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESAN 123
AFSIRHGVPL NPD+GKYLI+ ++S PMSYAH IFS +Q+PNIFTWNTMIRGYAES N
Sbjct: 61 AFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESEN 120
Query: 124 PLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183
P+ A+ELY +MHVS I+PDTHTYPFLLKAI+KL DVR GE+ HS+AIRNGFESLVFVQN+
Sbjct: 121 PMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNT 180
Query: 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
LVHMYAA GH + A K+FELM+ER+LV WNSVING+A NG+PNEALTLFREM GVEPD
Sbjct: 181 LVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPD 240
Query: 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303
G+TMVSL SACAELGALALGRRAH Y+ KVGL N++ NALLD Y+KCG I A +VF
Sbjct: 241 GFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFD 300
Query: 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363
EM +++ VSW++L+VGLAVNGFGKEALELFKE+E G +P E+TFVGVLYACSHCGMVDE
Sbjct: 301 EMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDE 360
Query: 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423
GF YFKRMK+EYGI+PKIEH+GCMVDLLGRAGLVKQA+E+IQNM M PNAV+WRTLLGAC
Sbjct: 361 GFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGAC 420
Query: 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPG 483
TIHGH A+ E+AR+ LLQLEPKHSGDYVLLSNLYA EQRW +V +VRRTM++E VKKTPG
Sbjct: 421 TIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPG 480
Query: 484 HSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKED 543
HSLVEL NR+ EF MGDRSHPQTEEI+ LAEITK LKLEGYVP NV ADIEEEEKE
Sbjct: 481 HSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKET 540
Query: 544 ALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFH 603
ALSYHSEKIAIAFML+NTA G P+RVVKNLRVCADCHLAIKLISKV+ REIVVRDRSRFH
Sbjct: 541 ALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFH 600
Query: 604 HFKDGHCSCRDYW 616
HFKDGHCSC+DYW
Sbjct: 601 HFKDGHCSCKDYW 613
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/585 (74%), Positives = 506/585 (86%), Gaps = 4/585 (0%)
Query: 32 ASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF 91
+ ENP+T KCI+LLQ CASSKHKLKQ+HAFSIRHGV LNNPD+GK+LI+ IVSLS
Sbjct: 11 TTPENPLT----KCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSA 66
Query: 92 PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151
PMSYA+N+F+ + +PN+FTWNT+IRGYAES NP A Y +M VS ++PDTHTYPFLLK
Sbjct: 67 PMSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLK 126
Query: 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211
AISK +VR GE HSV IRNGFESLVFVQNSL+H+YAA G + A KVFELM ERDLVA
Sbjct: 127 AISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVA 186
Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
WNS+INGFA NG+PNEALTLFREM+ EGVEPDG+T+VSL SA AELGAL LGRR H Y+
Sbjct: 187 WNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLL 246
Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALE 331
KVGLS N +V N+LLD Y+KCG I AQRVF EM +RNAVSW++L+VGLAVNGFG+EALE
Sbjct: 247 KVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALE 306
Query: 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391
LFKEME G VP E+TFVGVLYACSHCGM+DEGF YF+RMK+E GI+P+IEH+GCMVDLL
Sbjct: 307 LFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLL 366
Query: 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451
RAGLVKQAYEYIQNM + PNAVIWRTLLGACTIHGH + EIARS LL LEPKHSGDYV
Sbjct: 367 SRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYV 426
Query: 452 LLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHA 511
LLSNLYA E+RW +VQ +RR+M+K+ VKKTPG+SLVELGNRV+EF MGDRSHPQ+++++A
Sbjct: 427 LLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYA 486
Query: 512 MLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVK 571
+L +IT+ LKLEGYVP T NV ADIEEEEKE ALSYHSEK+AIAFML+NT PGTP+RV+K
Sbjct: 487 LLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMK 546
Query: 572 NLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
NLRVCADCH+AIKLI+K+Y REIV+RDRSRFHHF+ G CSC+DYW
Sbjct: 547 NLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/580 (71%), Positives = 491/580 (84%), Gaps = 1/580 (0%)
Query: 38 ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
++ ++RKCI+L+Q+C SS+ KLKQ+HAFSIRHGVP NPD K+LI+A+VSLS PMS+A
Sbjct: 30 LSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAA 89
Query: 98 NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKL 156
IF+ +Q PNIFTWNTMIRG+AES NP AVEL+S+MH S I PDTHT+PFL KA++KL
Sbjct: 90 QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKL 149
Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
DV +GE HSV +RNGF+SL FVQNSLVHMY+ FG + A +VFE+MS RD VAWNSVI
Sbjct: 150 MDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVI 209
Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
NGFA NG PNEALTL+REM SEGVEPDG+TMVSL SAC ELGALALG R H Y+ KVGL
Sbjct: 210 NGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLV 269
Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
N + +NALLD YSKCG AQ+VF EM +R+ VSW++L+VGLAVNG G EAL+LF E+
Sbjct: 270 QNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL 329
Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
E G P E+TFVGVLYACSHCGM+DEGF+YF+RMK+EYGI+P+IEH GCMVDLL RAG
Sbjct: 330 ERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGK 389
Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
V AY+YI+NM +PPNAVIWRTLLGACTIHGH + E+AR+ + +LE +HSGD+VLLSNL
Sbjct: 390 VGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449
Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
YA E+RWL+VQ VR+ M+ + VKKTPG+SLVEL NRV+EF MGDRSHPQ+EE +AMLA+I
Sbjct: 450 YASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKI 509
Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
T+ LK+EGYVPRT NV ADIEEEEKE ALS+H+EK+AIAFMLVNT PGTP+R++KNLRVC
Sbjct: 510 TQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569
Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
ADCHLAIKLISKV+ REI+VRDRSRFHHFKDG CSC+DYW
Sbjct: 570 ADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/580 (70%), Positives = 490/580 (84%), Gaps = 1/580 (0%)
Query: 38 ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97
++ ++RKCI+L+Q+C SS+ KLKQ+HAFSIRHGVP NPD K+LI+A+VSLS PMS+A
Sbjct: 30 LSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAA 89
Query: 98 NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHV-SGIKPDTHTYPFLLKAISKL 156
IF+ +Q PNIFTWNTMIRG+AES NP AVEL+S+MH S I PDTHT+PFL KA++KL
Sbjct: 90 QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKL 149
Query: 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVI 216
DV +GE HSV +RNGF+SL FVQNSLVHMY+ G + A +VFE+MS RD VAWNSVI
Sbjct: 150 MDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVI 209
Query: 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS 276
NGFA NG PNEALTL+REM SEGVEPDG+TMVSL SAC ELGALALG R H Y+ KVGL
Sbjct: 210 NGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLV 269
Query: 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336
N + +NALLD YSKCG AQ+VF EM +R+ VSW++L+VGLAVNG G EAL+LF E+
Sbjct: 270 QNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL 329
Query: 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396
E G P E+TFVGVLYACSHCGM+DEGF+YF+RMK+EYGI+P+IEH GCMVDLL RAG
Sbjct: 330 ERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGK 389
Query: 397 VKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456
V AY+YI+NM +PPNAVIWRTLLGACTIHGH + E+AR+ + +LE +HSGD+VLLSNL
Sbjct: 390 VGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449
Query: 457 YAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEI 516
YA E+RWL+VQ VR+ M+ + VKKTPG+SLVEL NRV+EF MGDRSHPQ+EE +AMLA+I
Sbjct: 450 YASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKI 509
Query: 517 TKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVC 576
T+ LK+EGYVPRT NV ADIEEEEKE ALS+H+EK+AIAFMLVNT PGTP+R++KNLRVC
Sbjct: 510 TQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569
Query: 577 ADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
ADCHLAIKLISKV+ REI+VRDRSRFHHFKDG CSC+DYW
Sbjct: 570 ADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g21065-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/605 (69%), Positives = 491/605 (81%), Gaps = 26/605 (4%)
Query: 23 VKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYL 82
V S +TP E P+T KCI LLQ CASSKHKL+ +HAFSIRHGV LNNPD+GK+L
Sbjct: 6 VTSFLSTTP---EYPLT----KCIYLLQFCASSKHKLRXIHAFSIRHGVLLNNPDMGKHL 58
Query: 83 IYAIVSLSFPMSYAHNIFSHV-----------QDPNIFTWNTMIRGYAESANPLLAVELY 131
I+ IVSLS PMSYA+N+F+ V +PN+FTWNTM RGYAES NP A+ Y
Sbjct: 59 IFTIVSLSAPMSYAYNVFTWVLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFY 118
Query: 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191
+M VS I+PDTHTYPFLLKAISK +VR GE HSV IRNGFESLVFVQNSL+H+YAA
Sbjct: 119 RQMIVSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAAC 178
Query: 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251
G + A VFELM +RDLVA SVINGFA NG+P+EALTLFREM++EGVEPDG+T+VSL
Sbjct: 179 GDTESAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLL 238
Query: 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311
SA AELGAL LGRR H Y+ KVGL +N +V N+LLD Y+KC I +R NAV
Sbjct: 239 SASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXER--------NAV 290
Query: 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371
SW++L+VGLAVNGFG+EALELF+EME G VP E+TFVGVLYACSHCGM+DEGF YF+RM
Sbjct: 291 SWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRM 350
Query: 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAI 431
K+E+GIMP+IEH+GCMVDLL RAGLVKQAYEYIQNM + PNAV WRTLLGACTIHGH +
Sbjct: 351 KEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGL 410
Query: 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGN 491
E ARS LL+LEPKHSGDYVLLSNLY E RW +VQ +RR+M+K+ VKKT G+SLVELGN
Sbjct: 411 GETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGN 470
Query: 492 RVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEK 551
RV+EF MG+RSHPQ+++++A+L +IT+ LKLEGYVP T NV ADIEEEEKE ALSYHSEK
Sbjct: 471 RVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEK 530
Query: 552 IAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCS 611
AIAFM +NTAPGT +RV+KNLRVCADCH+AIKL++KVY REIV+RDR RFHHF+ G CS
Sbjct: 531 XAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCS 590
Query: 612 CRDYW 616
C+DYW
Sbjct: 591 CKDYW 595
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/582 (65%), Positives = 477/582 (81%), Gaps = 6/582 (1%)
Query: 41 VVRKCITLLQVCA-SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAH 97
+V KCI LLQ SS KL+Q+HAFSIRHGV +++ +LGK+LI+ +VSL P MSYAH
Sbjct: 14 MVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73
Query: 98 NIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISK 155
+FS ++ P N+F WNT+IRGYAE N + A LY +M VSG ++PDTHTYPFL+KA++
Sbjct: 74 KVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTT 133
Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
+ADVR+GE HSV IR+GF SL++VQNSL+H+YA G V A KVF+ M E+DLVAWNSV
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193
Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
INGFA NGKP EAL L+ EM S+G++PDG+T+VSL SACA++GAL LG+R H Y+ KVGL
Sbjct: 194 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 253
Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
+ N++ +N LLD Y++CG + A+ +F EM +N+VSW++L+VGLAVNGFGKEA+ELFK
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 313
Query: 336 ME-IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
ME G +P E+TFVG+LYACSHCGMV EGF YF+RM++EY I P+IEHFGCMVDLL RA
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373
Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
G VK+AYEYI++M M PN VIWRTLLGACT+HG S +AE AR +LQLEP HSGDYVLLS
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLS 433
Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
N+YA EQRW +VQ++R+ M+++ VKK PGHSLVE+GNRV EF MGD+SHPQ++ I+A L
Sbjct: 434 NMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLK 493
Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
E+T +L+ EGYVP+ NV+ D+EEEEKE+A+ YHSEKIAIAFML++T +P+ VVKNLR
Sbjct: 494 EMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLR 553
Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
VCADCHLAIKL+SKVY+REIVVRDRSRFHHFK+G CSC+DYW
Sbjct: 554 VCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/582 (65%), Positives = 473/582 (81%), Gaps = 6/582 (1%)
Query: 41 VVRKCITLLQVCA-SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAH 97
+V KCI LLQ SS KL+Q+HAFSIR+GV +++ +LGK+LI+ +VSL P MSYAH
Sbjct: 14 MVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73
Query: 98 NIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISK 155
+FS ++ P N+F WNT+IRGYAE N + AV LY +M SG ++PDTHTYPFLLKA+ K
Sbjct: 74 KVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGK 133
Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
+ADVR+GE HSV IR+GF SL++VQNSL+H+YA G V A KVF+ M E+DLVAWNSV
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193
Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
INGFA NGKP EAL L+ EM +G++PDG+T+VSL SACA++GAL LG+R H Y+ KVGL
Sbjct: 194 INGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGL 253
Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
+ N++ +N LLD Y++CG + A+ +F EM +N+VSW++L+VGLAVNG GKEA+ELFK
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKN 313
Query: 336 MEIG-GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
ME G +P E+TFVG+LYACSHCGMV EGF YF+RM +EY I P+IEHFGCMVDLL RA
Sbjct: 314 MESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARA 373
Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
G VK+AYEYI M M PN VIWRTLLGACT+HG S +AE+AR +LQLEP HSGDYVLLS
Sbjct: 374 GQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLS 433
Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
N+YA EQRW +VQ++R+ M+++ V+K PGHSLVE+GNRV EF MGD+SHPQ + I+A L
Sbjct: 434 NMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLK 493
Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
E+T +L+LEGYVP+ NV+ D+EEEEKE+AL YHSEKIAIAFML++T P+RVVKNL+
Sbjct: 494 EMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLK 553
Query: 575 VCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
VCADCHLAIKL+SKVY+REIVVRDRSRFHHFK+G CSC+DYW
Sbjct: 554 VCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana] gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/567 (64%), Positives = 463/567 (81%), Gaps = 6/567 (1%)
Query: 41 VVRKCITLLQVCA-SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAH 97
+V KCI LLQ SS KL+Q+HAFSIRHGV +++ +LGK+LI+ +VSL P MSYAH
Sbjct: 14 MVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73
Query: 98 NIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISK 155
+FS ++ P N+F WNT+IRGYAE N + A LY +M VSG ++PDTHTYPFL+KA++
Sbjct: 74 KVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTT 133
Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
+ADVR+GE HSV IR+GF SL++VQNSL+H+YA G V A KVF+ M E+DLVAWNSV
Sbjct: 134 MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 193
Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
INGFA NGKP EAL L+ EM S+G++PDG+T+VSL SACA++GAL LG+R H Y+ KVGL
Sbjct: 194 INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 253
Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
+ N++ +N LLD Y++CG + A+ +F EM +N+VSW++L+VGLAVNGFGKEA+ELFK
Sbjct: 254 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 313
Query: 336 ME-IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
ME G +P E+TFVG+LYACSHCGMV EGF YF+RM++EY I P+IEHFGCMVDLL RA
Sbjct: 314 MESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARA 373
Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
G VK+AYEYI++M M PN VIWRTLLGACT+HG S +AE AR +LQLEP HSGDYVLLS
Sbjct: 374 GQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLS 433
Query: 455 NLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514
N+YA EQRW +VQ++R+ M+++ VKK PGHSLVE+GNRV EF MGD+SHPQ++ I+A L
Sbjct: 434 NMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLK 493
Query: 515 EITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLR 574
E+T +L+ EGYVP+ NV+ D+EEEEKE+A+ YHSEKIAIAFML++T +P+ VVKNLR
Sbjct: 494 EMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLR 553
Query: 575 VCADCHLAIKLISKVYSREIVVRDRSR 601
VCADCHLAIKL+SKVY+REIVVRDRSR
Sbjct: 554 VCADCHLAIKLVSKVYNREIVVRDRSR 580
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/453 (77%), Positives = 397/453 (87%)
Query: 149 LLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD 208
+ +AI+KL DVR GE+ HS+AIRNGFESLVFVQN+LVHMYAA GH + A K+FELM+ER+
Sbjct: 1 MQRAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERN 60
Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268
LV WNSVING+A NG+PNEALTLFREM GVEPDG+TMVSL SACAELGALALGRRAH
Sbjct: 61 LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 120
Query: 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328
Y+ KVGL N++ NALLD Y+KCG I A +VF EM +++ VSW++L+VGLAVNGFGKE
Sbjct: 121 YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKE 180
Query: 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388
ALELFKE+E G +P E+TFVGVLYACSHCGMVDEGF YFKRMK+EYGI+PKIEH+GCMV
Sbjct: 181 ALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMV 240
Query: 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448
DLLGRAGLVKQA+E+IQNM M PNAV+WRTLLGACTIHGH A+ E+AR+ LLQLEPKHSG
Sbjct: 241 DLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSG 300
Query: 449 DYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEE 508
DYVLLSNLYA EQRW +V +VRRTM++E VKKTPGHSLVEL NR+ EF MGDRSHPQTEE
Sbjct: 301 DYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEE 360
Query: 509 IHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVR 568
I+ LAEITK LKLEGYVP NV ADIEEEEKE ALSYHSEKIAIAFML+NTA G P+R
Sbjct: 361 IYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIR 420
Query: 569 VVKNLRVCADCHLAIKLISKVYSREIVVRDRSR 601
VVKNLRVCADCHLAIKLISKV+ REIVVRDRSR
Sbjct: 421 VVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group] gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/586 (56%), Positives = 436/586 (74%), Gaps = 16/586 (2%)
Query: 42 VRKCITLLQV--CASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSL-SFPMSYAHN 98
+R C+ LL++ A S KQ+HA ++R GVP ++P L K+L++ + +L + P+ YA
Sbjct: 12 LRHCVALLRLHLAAPSLAAAKQIHARALRAGVPTSHPLLAKHLLFHLAALRAPPLRYAVA 71
Query: 99 IFSHVQ-----DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
+ S + DP F NT++R A S P +A+EL+ + PDTHTYP L++A
Sbjct: 72 VLSRLLPHGPLDP--FPLNTVLRIAAGSPRPRVALELHRRRLA---LPDTHTYPPLIQAC 126
Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS--ERDLVA 211
++L +R GE H+ A +NGF +LVFVQNSLVH+Y A G + A KVF+ M R+LV+
Sbjct: 127 ARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLVS 186
Query: 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271
WNS++N FA+NG+PNE LT+F EM PDG+T+VS+ +ACAE GALALGRR H YV
Sbjct: 187 WNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRVHVYVE 246
Query: 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM-RKRNAVSWSTLVVGLAVNGFGKEAL 330
KVGL +N +V+NAL+D Y+KCG + A+R+F EM R VSW++L+VGLA NGFGKEAL
Sbjct: 247 KVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEAL 306
Query: 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390
ELF ME VP E+T VGVLYACSHCG+VD+GF YF RMK++YGI P+IEH GCMVDL
Sbjct: 307 ELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDL 366
Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
LGRAG V++AY+YI M + PNAV+WRTLLG+C +H + ++A L++L+P HSGDY
Sbjct: 367 LGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDY 426
Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
VLLSNLYA W +V +R+TMVK+RV+K PGHSLVEL N V+EF MGDRSHP++E+I+
Sbjct: 427 VLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIY 486
Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
MLAEI ++L+ EGY+PRT NV ADIEEEEKE AL+YHSE++AIAF L+ + PG P+R++
Sbjct: 487 EMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRII 546
Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
KNLR+C DCH+A LISKVY REI+VRDRSRFHHF+ G CSC+DYW
Sbjct: 547 KNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 616 | ||||||
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.952 | 0.986 | 0.631 | 3.2e-207 | |
| TAIR|locus:2049562 | 584 | AT2G01510 "AT2G01510" [Arabido | 0.941 | 0.993 | 0.419 | 4.4e-123 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.961 | 0.981 | 0.396 | 1.5e-120 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.845 | 0.703 | 0.418 | 1.1e-117 | |
| TAIR|locus:2079187 | 591 | AT3G47530 "AT3G47530" [Arabido | 0.920 | 0.959 | 0.418 | 1.1e-117 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.907 | 0.887 | 0.395 | 3.4e-116 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.897 | 0.683 | 0.413 | 1e-114 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.922 | 0.573 | 0.401 | 1.7e-114 | |
| TAIR|locus:2034456 | 606 | AT1G31920 [Arabidopsis thalian | 0.928 | 0.943 | 0.403 | 2.2e-114 | |
| TAIR|locus:2102514 | 581 | AT3G56550 [Arabidopsis thalian | 0.928 | 0.984 | 0.385 | 9.4e-114 |
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2004 (710.5 bits), Expect = 3.2e-207, P = 3.2e-207
Identities = 375/594 (63%), Positives = 475/594 (79%)
Query: 30 TPASQENPIT-SVVRKCITLLQVCA-SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV 87
+P S+ + + +V KCI LLQ SS KL+Q+HAFSIRHGV +++ +LGK+LI+ +V
Sbjct: 2 SPFSETSVLLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLV 61
Query: 88 SLSFP--MSYAHNIFSHVQDP-NIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDT 143
SL P MSYAH +FS ++ P N+F WNT+IRGYAE N + A LY +M VSG ++PDT
Sbjct: 62 SLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDT 121
Query: 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203
HTYPFL+KA++ +ADVR+GE HSV IR+GF SL++VQNSL+H+YA G V A KVF+
Sbjct: 122 HTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDK 181
Query: 204 MSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEXXXXXXX 263
M E+DLVAWNSVINGFA NGKP EAL L+ EM S+G++PDG+T+VSL SACA+
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241
Query: 264 XXXHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
H Y+ KVGL+ N++ +N LLD Y++CG + A+ +F EM +N+VSW++L+VGLAVN
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301
Query: 324 GFGKEALELFKEME-IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE 382
GFGKEA+ELFK ME G +P E+TFVG+LYACSHCGMV EGF YF+RM++EY I P+IE
Sbjct: 302 GFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIE 361
Query: 383 HFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442
HFGCMVDLL RAG VK+AYEYI++M M PN VIWRTLLGACT+HG S +AE AR +LQL
Sbjct: 362 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL 421
Query: 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRS 502
EP HSGDYVLLSN+YA EQRW +VQ++R+ M+++ VKK PGHSLVE+GNRV EF MGD+S
Sbjct: 422 EPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKS 481
Query: 503 HPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTA 562
HPQ++ I+A L E+T +L+ EGYVP+ NV+ D+EEEEKE+A+ YHSEKIAIAFML++T
Sbjct: 482 HPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTP 541
Query: 563 PGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
+P+ VVKNLRVCADCHLAIKL+SKVY+REIVVRDRSRFHHFK+G CSC+DYW
Sbjct: 542 ERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
|
|
| TAIR|locus:2049562 AT2G01510 "AT2G01510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1210 (431.0 bits), Expect = 4.4e-123, P = 4.4e-123
Identities = 246/586 (41%), Positives = 355/586 (60%)
Query: 33 SQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP 92
+++ P+T + LL+ +S +LK++HA +R G N L + L+ +V +
Sbjct: 3 AKQTPLTKQMLS--ELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQ-LLENLVVIG-D 58
Query: 93 MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152
M YA +F + P IF WNT+ +GY + P ++ LY KM G++PD TYPF++KA
Sbjct: 59 MCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKA 118
Query: 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAW 212
IS+L D G H+ ++ GF L V LV MY FG + A +FE M +DLVAW
Sbjct: 119 ISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAW 178
Query: 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEXXXXXXXXXXHTYVWK 272
N+ + G AL F +M ++ V+ D +T+VS+ SAC + + K
Sbjct: 179 NAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARK 238
Query: 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332
+ N+ V NA LD + KCG AA+ +F EM++RN VSWST++VG A+NG +EAL L
Sbjct: 239 EEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTL 298
Query: 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM--KDEYGIMPKIEHFGCMVDL 390
F M+ G P VTF+GVL ACSH G+V+EG YF M ++ + P+ EH+ CMVDL
Sbjct: 299 FTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDL 358
Query: 391 LGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450
LGR+GL+++AYE+I+ M + P+ IW LLGAC +H + + L++ P +
Sbjct: 359 LGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYH 418
Query: 451 VLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIH 510
VLLSN+YA +W V +VR M K KK +S VE ++ F GD+SHPQ++ I+
Sbjct: 419 VLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIY 478
Query: 511 AMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVV 570
L EI KK++ GYVP T +VF D+E EEKE +LS+HSEK+AIAF L+ PG P+RV+
Sbjct: 479 EKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVM 538
Query: 571 KNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
KNLR C DCH K +S + S EI++RD++RFHHF++G CSC+++W
Sbjct: 539 KNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
Identities = 237/597 (39%), Positives = 364/597 (60%)
Query: 23 VKSLYHSTPASQENPITSV-VRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKY 81
+ S H+ ++ + I +V + I L+ C +S +L Q+ A++I+ + + + K
Sbjct: 9 ISSFSHAETFTKHSKIDTVNTQNPILLISKC-NSLRELMQIQAYAIKSHIE-DVSFVAKL 66
Query: 82 LIYAIVS-LSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK 140
+ + S MSYA ++F + +P+I +N+M RGY+ NPL L+ ++ GI
Sbjct: 67 INFCTESPTESSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGIL 126
Query: 141 PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200
PD +T+P LLKA + + G Q H ++++ G + V+V +L++MY V A V
Sbjct: 127 PDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCV 186
Query: 201 FELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEXXXX 260
F+ + E +V +N++I G+A +PNEAL+LFREM + ++P+ T++S+ S+CA
Sbjct: 187 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSL 246
Query: 261 XXXXXXHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGL 320
H Y K V VN AL+D ++KCG + A +F +MR ++ +WS ++V
Sbjct: 247 DLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAY 306
Query: 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380
A +G ++++ +F+ M P E+TF+G+L ACSH G V+EG YF +M ++GI+P
Sbjct: 307 ANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPS 366
Query: 381 IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440
I+H+G MVDLL RAG ++ AYE+I + + P ++WR LL AC+ H + +AE +
Sbjct: 367 IKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIF 426
Query: 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGD 500
+L+ H GDYV+LSNLYA ++W V +R+ M + K PG S +E+ N V EFF GD
Sbjct: 427 ELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGD 486
Query: 501 RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVF-ADIEEEEKEDALSYHSEKIAIAFMLV 559
T ++H L E+ K+LKL GYVP T V A++ ++EKE L YHSEK+AI F L+
Sbjct: 487 GVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLL 546
Query: 560 NTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
NT PGT +RVVKNLRVC DCH A KLIS ++ R++V+RD RFHHF+DG CSC D+W
Sbjct: 547 NTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 219/523 (41%), Positives = 328/523 (62%)
Query: 96 AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
A +F + ++ +WN MI GYAE+ N A+EL+ M + ++PD T ++ A ++
Sbjct: 219 AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQ 278
Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
+ +G Q H +GF S + + N+L+ +Y+ G ++ AC +FE + +D+++WN++
Sbjct: 279 SGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTL 338
Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEXXXXXXXXXXHTYVWK--V 273
I G+ EAL LF+EM G P+ TM+S+ ACA H Y+ K
Sbjct: 339 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLK 398
Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
G+++ ++ +L+D Y+KCG I AA +VF + ++ SW+ ++ G A++G + +LF
Sbjct: 399 GVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
M G P ++TFVG+L ACSH GM+D G F+ M +Y + PK+EH+GCM+DLLG
Sbjct: 459 SRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGH 518
Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
+GL K+A E I M M P+ VIW +LL AC +HG+ + E L+++EP++ G YVLL
Sbjct: 519 SGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLL 578
Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
SN+YA RW V + R + + +KK PG S +E+ + V EF +GD+ HP+ EI+ ML
Sbjct: 579 SNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGML 638
Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
E+ L+ G+VP T V ++EEE KE AL +HSEK+AIAF L++T PGT + +VKNL
Sbjct: 639 EEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNL 698
Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
RVC +CH A KLISK+Y REI+ RDR+RFHHF+DG CSC DYW
Sbjct: 699 RVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2079187 AT3G47530 "AT3G47530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 241/576 (41%), Positives = 347/576 (60%)
Query: 49 LQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAHNIFSHVQDP 106
L V ++ K L+Q+HA +R + + N D+ + + + P ++Y+ +FS +P
Sbjct: 17 LIVSSTGKLHLRQIHALLLRTSL-IRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRLNP 75
Query: 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP-DTHTYPFLLKAISKLADVRMGEQT 165
+ NTMIR ++ S P L+ + + P + + F LK K D+ G Q
Sbjct: 76 TLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQI 135
Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
H +GF S + +L+ +Y+ + DACKVF+ + +RD V+WN + + + N +
Sbjct: 136 HGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRT 195
Query: 226 NEALTLFREMASE--G-VEPDGYTMVSLFSACAEXXXXXXXXXXHTYVWKVGLSDNVNVN 282
+ L LF +M ++ G V+PDG T + ACA H ++ + GLS +N++
Sbjct: 196 RDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLS 255
Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
N L+ YS+CG + A +VF MR+RN VSW+ L+ GLA+NGFGKEA+E F EM G
Sbjct: 256 NTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGIS 315
Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKD-EYGIMPKIEHFGCMVDLLGRAGLVKQAY 401
P E T G+L ACSH G+V EG +F RM+ E+ I P + H+GC+VDLLGRA L+ +AY
Sbjct: 316 PEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAY 375
Query: 402 EYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461
I++M M P++ IWRTLLGAC +HG + E S L++L+ + +GDYVLL N Y+
Sbjct: 376 SLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVG 435
Query: 462 RWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521
+W V E+R M ++R+ PG S +EL V EF + D SHP+ EEI+ MLAEI ++LK
Sbjct: 436 KWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLK 495
Query: 522 LEGYVPRTENVFADIE-EEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCH 580
+ GYV + ++E EEEK AL YHSEK+AIAF ++ T PGT +RV KNLR C DCH
Sbjct: 496 IAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCH 555
Query: 581 LAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
K +S VY R ++VRDRSRFHHFK G CSC D+W
Sbjct: 556 NFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
|
|
| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 227/574 (39%), Positives = 349/574 (60%)
Query: 48 LLQVCASSKHKLKQVHAFSI--RHGVPLNNPDLGKYLIYAIVSL--SFPM-SYAHNIFSH 102
L++ C S++ VH ++ RH + N +L+ ++++ F + + AH +F
Sbjct: 67 LIKCCISNR----AVHEGNLICRH-LYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQ 121
Query: 103 VQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMG 162
+ N+ +W TMI Y++ A+EL M ++P+ +TY +L++ + ++DVRM
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM- 180
Query: 163 EQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN 222
H I+ G ES VFV+++L+ ++A G +DA VF+ M D + WNS+I GFA N
Sbjct: 181 --LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 238
Query: 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAEXXXXXXXXXXHTYVWKVGLSDNVNVN 282
+ + AL LF+ M G + T+ S+ AC H ++ K ++ +N
Sbjct: 239 SRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKY--DQDLILN 296
Query: 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV 342
NAL+D Y KCG + A RVF +M++R+ ++WST++ GLA NG+ +EAL+LF+ M+ G
Sbjct: 297 NALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTK 356
Query: 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402
P +T VGVL+ACSH G++++G+ YF+ MK YGI P EH+GCM+DLLG+AG + A +
Sbjct: 357 PNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVK 416
Query: 403 YIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462
+ M P+AV WRTLLGAC + + +AE A ++ L+P+ +G Y LLSN+YA Q+
Sbjct: 417 LLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQK 476
Query: 463 WLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522
W +V+E+R M +KK PG S +E+ ++ F +GD SHPQ E+ L ++ +L
Sbjct: 477 WDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTG 536
Query: 523 EGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLA 582
GYVP T V D+E E+ ED+L +HSEK+A+AF L+ +R+ KNLR+C DCH+
Sbjct: 537 IGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVF 596
Query: 583 IKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
KL SK+ R IV+RD R+HHF+DG CSC DYW
Sbjct: 597 CKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 231/558 (41%), Positives = 332/558 (59%)
Query: 60 KQVHAFSIRHGVP-LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGY 118
K++H +++R G L N +YA + A +F + + N+ +WN+MI Y
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCG---SLETARQLFDGMLERNVVSWNSMIDAY 312
Query: 119 AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178
++ NP A+ ++ KM G+KP + L A + L D+ G H +++ G + V
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372
Query: 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238
V NSL+ MY V A +F + R LV+WN++I GFA NG+P +AL F +M S
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 432
Query: 239 GVEPDGYTMVSLFSACAEXXXXXXXXXXHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298
V+PD +T VS+ +A AE H V + L NV V AL+D Y+KCG I+ A
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492
Query: 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358
+ +F M +R+ +W+ ++ G +GFGK ALELF+EM+ G P VTF+ V+ ACSH
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 552
Query: 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418
G+V+ G F MK+ Y I ++H+G MVDLLGRAG + +A+++I M + P ++
Sbjct: 553 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612
Query: 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478
+LGAC IH + AE A L +L P G +VLL+N+Y W V +VR +M+++ +
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 479 KKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEE 538
+KTPG S+VE+ N V FF G +HP +++I+A L ++ +K GYVP T N+ +E
Sbjct: 673 RKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT-NLVLGVEN 731
Query: 539 EEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRD 598
+ KE LS HSEK+AI+F L+NT GT + V KNLRVCADCH A K IS V REIVVRD
Sbjct: 732 DVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRD 791
Query: 599 RSRFHHFKDGHCSCRDYW 616
RFHHFK+G CSC DYW
Sbjct: 792 MQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
Identities = 234/583 (40%), Positives = 355/583 (60%)
Query: 38 ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV---SLSFPMS 94
+TSV++ +L + + SK QVH H + +NN ++ A++ S + M
Sbjct: 419 MTSVLKAASSLPEGLSLSK----QVHV----HAIKINNVS-DSFVSTALIDAYSRNRCMK 469
Query: 95 YAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154
A +F + ++ WN M+ GY +S + ++L++ MH G + D T + K
Sbjct: 470 EAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCG 528
Query: 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNS 214
L + G+Q H+ AI++G++ ++V + ++ MY G + A F+ + D VAW +
Sbjct: 529 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTT 588
Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEXXXXXXXXXXHTYVWKVG 274
+I+G NG+ A +F +M GV PD +T+ +L A + H K+
Sbjct: 589 MISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 648
Query: 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFK 334
+++ V +L+D Y+KCG I A +F+ + N +W+ ++VGLA +G GKE L+LFK
Sbjct: 649 CTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFK 708
Query: 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394
+M+ G P +VTF+GVL ACSH G+V E + + + M +YGI P+IEH+ C+ D LGRA
Sbjct: 709 QMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRA 768
Query: 395 GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454
GLVKQA I++M M +A ++RTLL AC + G + + + LL+LEP S YVLLS
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLS 828
Query: 455 NLYAYEQRWLNVQEVRRTMVK-ERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
N+YA +W + ++ RTM+K +VKK PG S +E+ N++ F + DRS+ QTE I+ +
Sbjct: 829 NMYAAASKW-DEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKV 887
Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
++ + +K EGYVP T+ D+EEEEKE AL YHSEK+A+AF L++T P TP+RV+KNL
Sbjct: 888 KDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNL 947
Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
RVC DCH A+K I+KVY+REIV+RD +RFH FKDG CSC DYW
Sbjct: 948 RVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2034456 AT1G31920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 233/578 (40%), Positives = 351/578 (60%)
Query: 43 RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP--MSYAHNIF 100
++C+ LL+ C + + KQVHA I+ + ++ ++ + M+YA +IF
Sbjct: 31 QECLYLLKRCHNID-EFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIF 89
Query: 101 SHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160
+ DP F +NTMIRGY + A+ Y++M G +PD TYP LLKA ++L +R
Sbjct: 90 RGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIR 149
Query: 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFA 220
G+Q H + G E+ VFVQNSL++MY G ++ + VFE + + +W+S+++ A
Sbjct: 150 EGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARA 209
Query: 221 SNGKPNEALTLFREMASE-GVEPDGYTMVSLFSACAEXXXXXXXXXXHTYVWKVGLSD-N 278
G +E L LFR M SE ++ + MVS ACA H ++ + +S+ N
Sbjct: 210 GMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLR-NISELN 268
Query: 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
+ V +L+D Y KCG + A +F++M KRN +++S ++ GLA++G G+ AL +F +M
Sbjct: 269 IIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIK 328
Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
G P V +V VL ACSH G+V EG F M E + P EH+GC+VDLLGRAGL++
Sbjct: 329 EGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLE 388
Query: 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458
+A E IQ++ + N VIWRT L C + + + +IA LL+L + GDY+L+SNLY+
Sbjct: 389 EALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYS 448
Query: 459 YEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITK 518
Q W +V R + + +K+TPG S+VEL + F DRSHP+ +EI+ ML ++
Sbjct: 449 QGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEW 508
Query: 519 KLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
+LK EGY P + +++EEEK++ L HS+K+AIAF L+ T PG+ +++ +NLR+C+D
Sbjct: 509 QLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSD 568
Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
CH K IS +Y REIVVRDR+RFH FK G CSC+DYW
Sbjct: 569 CHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
|
|
| TAIR|locus:2102514 AT3G56550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
Identities = 223/578 (38%), Positives = 353/578 (61%)
Query: 43 RKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLI-YAIVSLSFPMSYAHNIFS 101
R + +LQ C S K KL+++H+ I +G+ ++P + +L+ + VS++ +S+A +F
Sbjct: 6 RVIVRMLQGCNSMK-KLRKIHSHVIINGLQ-HHPSIFNHLLRFCAVSVTGSLSHAQLLFD 63
Query: 102 HVQ-DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI-KPDTHTYPFLLKAISKLADV 159
H DP+ WN +IRG++ S++PL ++ Y++M +S + +PD T+ F LK+ ++ +
Sbjct: 64 HFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSI 123
Query: 160 RMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219
+ H IR+GF V SLV Y+A G V+ A KVF+ M RDLV+WN +I F
Sbjct: 124 PKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCF 183
Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEXXXXXXXXXXHTYVWKVGLSDNV 279
+ G N+AL++++ M +EGV D YT+V+L S+CA H + V
Sbjct: 184 SHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCV 243
Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339
V+NAL+D Y+KCG + A VF MRKR+ ++W+++++G V+G G EA+ F++M
Sbjct: 244 FVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVAS 303
Query: 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399
G P +TF+G+L CSH G+V EG +F+ M ++ + P ++H+GCMVDL GRAG ++
Sbjct: 304 GVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLEN 363
Query: 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459
+ E I + V+WRTLLG+C IH + + E+A L+QLE ++GDYVL++++Y+
Sbjct: 364 SLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSA 423
Query: 460 EQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKK 519
+R+ + ++ PG S +E+G++V +F + D+ HP++ I++ L E+ +
Sbjct: 424 ANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINR 483
Query: 520 LKLEGYVPRTENVFAD-IEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578
L GY P N A + + A + HSEK+AIA+ L+ T GT +R+ KNLRVC D
Sbjct: 484 AILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRD 543
Query: 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
CH K +SK ++REI+VRDR RFHHF DG CSC DYW
Sbjct: 544 CHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A8MQA3 | PP330_ARATH | No assigned EC number | 0.6512 | 0.9350 | 0.9680 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 616 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-151 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-145 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-60 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-40 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-35 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 2e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 457 bits (1178), Expect = e-151
Identities = 221/581 (38%), Positives = 327/581 (56%), Gaps = 18/581 (3%)
Query: 38 ITSVVRKCITLLQVCASSKHKLKQVHAFSIRHG----VPLNNPDLGKYLIYAIVSLSFPM 93
ITSV+ C L + +++H + ++ G V + N LI +SL
Sbjct: 291 ITSVISACELL-----GDERLGREMHGYVVKTGFAVDVSVCNS-----LIQMYLSLGS-W 339
Query: 94 SYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153
A +FS ++ + +W MI GY ++ P A+E Y+ M + PD T +L A
Sbjct: 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213
+ L D+ +G + H +A R G S V V N+L+ MY+ + A +VF + E+D+++W
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459
Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273
S+I G N + EAL FR+M ++P+ T+++ SACA +GAL G+ H +V +
Sbjct: 460 SIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518
Query: 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELF 333
G+ + + NALLD Y +CG + A F +++ VSW+ L+ G +G G A+ELF
Sbjct: 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELF 577
Query: 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393
M G P EVTF+ +L ACS GMV +G YF M+++Y I P ++H+ C+VDLLGR
Sbjct: 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637
Query: 394 AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453
AG + +AY +I M + P+ +W LL AC IH H + E+A + +L+P G Y+LL
Sbjct: 638 AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697
Query: 454 SNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAML 513
NLYA +W V VR+TM + + PG S VE+ +V F D SHPQ +EI+ +L
Sbjct: 698 CNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757
Query: 514 AEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNL 573
+K+K G + +I E K+D HSE++AIAF L+NT PG P+ V KNL
Sbjct: 758 EGFYEKMKASGLAGSESSSMDEI-EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNL 816
Query: 574 RVCADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614
+C +CH +K ISK+ REI VRD +FHHFKDG CSC D
Sbjct: 817 YMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 437 bits (1126), Expect = e-145
Identities = 191/521 (36%), Positives = 298/521 (57%)
Query: 96 AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
A +F + + N+ +W T+I G ++ N A L+ +M G + T+ +L+A +
Sbjct: 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
L R G+Q H ++ G FV +L+ MY+ G ++DA VF+ M E+ VAWNS+
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296
Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
+ G+A +G EAL L+ EM GV D +T + + L L ++AH + + G
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356
Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
++ N AL+D YSK G + A+ VF M ++N +SW+ L+ G +G G +A+E+F+
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416
Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
M G P VTF+ VL AC + G+ ++G+ F+ M + + I P+ H+ CM++LLGR G
Sbjct: 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476
Query: 396 LVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455
L+ +AY I+ P +W LL AC IH + + +A L + P+ +YV+L N
Sbjct: 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN 536
Query: 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAE 515
LY R +V T+ ++ + P + +E+ + FF GDR HPQ+ EI+ L E
Sbjct: 537 LYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596
Query: 516 ITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRV 575
+ K++ GYV + D++E+E++ + YHSEK+AIAF L+NT+ TP+++ ++ R+
Sbjct: 597 LMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRI 656
Query: 576 CADCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616
C DCH IK I+ V REIVVRD SRFHHFK G CSC DYW
Sbjct: 657 CKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-60
Identities = 115/351 (32%), Positives = 189/351 (53%), Gaps = 5/351 (1%)
Query: 96 AHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
A +F + + ++F+WN ++ GYA++ A+ LY +M +G++PD +T+P +L+
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199
Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV 215
+ D+ G + H+ +R GFE V V N+L+ MY G V A VF+ M RD ++WN++
Sbjct: 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM 259
Query: 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275
I+G+ NG+ E L LF M V+PD T+ S+ SAC LG LGR H YV K G
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319
Query: 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKE 335
+ +V+V N+L+ Y G A++VF M ++AVSW+ ++ G NG +ALE +
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYAL 379
Query: 336 MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395
ME P E+T VL AC+ G +D G + + + G++ + ++++ +
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHE-LAERKGLISYVVVANALIEMYSKCK 438
Query: 396 LVKQAYEYIQNMLMPPNAVI-WRTLLGACTIHGHSAIAEIA-RSTLLQLEP 444
+ +A E N +P VI W +++ ++ A I R LL L+P
Sbjct: 439 CIDKALEVFHN--IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-40
Identities = 89/313 (28%), Positives = 149/313 (47%), Gaps = 25/313 (7%)
Query: 127 AVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185
A+EL+ + TY L++A L +R + + +GFE ++ N ++
Sbjct: 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165
Query: 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
M+ G + DA ++F+ M ER+L +W ++I G G EA LFREM +G + +
Sbjct: 166 LMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225
Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305
T V + A A LG+ G++ H V K G+ + V+ AL+D YSKCG I A+ VF M
Sbjct: 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285
Query: 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS--------- 356
++ V+W++++ G A++G+ +EAL L+ EM G + TF ++ S
Sbjct: 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
Query: 357 --HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV 414
H G++ GF I +VDL + G ++ A + + + N +
Sbjct: 346 QAHAGLIRTGFPL------------DIVANTALVDLYSKWGRMEDA-RNVFDRMPRKNLI 392
Query: 415 IWRTLLGACTIHG 427
W L+ HG
Sbjct: 393 SWNALIAGYGNHG 405
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-35
Identities = 82/254 (32%), Positives = 122/254 (48%), Gaps = 2/254 (0%)
Query: 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171
N+ +R A++L M + D Y L + V G + S A+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231
+ V + N+++ M+ FG + A VF M ERDL +WN ++ G+A G +EAL L
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291
+ M GV PD YT + C + LA GR H +V + G +V+V NAL+ Y K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGV 351
CG +++A+ VF M +R+ +SW+ ++ G NG E LELF M P +T V
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 352 LYACSHCGMVDEGF 365
+ AC G DE
Sbjct: 295 ISACELLG--DERL 306
|
Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-20
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 17/117 (14%)
Query: 496 FFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKED------ALSYHS 549
GD SHP ++E E+ +++K+EG VP T+ + D++ EE D L+ H+
Sbjct: 11 TLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLASHA 64
Query: 550 EKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606
EK A+A+ T + R+C DCH + I+K REI+VRD SRFHHFK
Sbjct: 65 EKQALAY-----GLLTTRIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 71/257 (27%), Positives = 115/257 (44%), Gaps = 37/257 (14%)
Query: 193 HVKD---ACKVFELMSERDLVA----WNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245
+D A +V L+ E L A + ++I+ A +GK + +F EM + GVE + +
Sbjct: 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508
Query: 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN----VNNALLDFYSKCGIIIAAQRV 301
T +L CA G +A A + + S NV V NAL+ S CG A R
Sbjct: 509 TFGALIDGCARAGQVAKAFGA----YGIMRSKNVKPDRVVFNALI---SACGQSGAVDRA 561
Query: 302 F---REMR------KRNAVSWSTLVVGLAVNGFGKEALELFKEME---IGGFVPGEVTFV 349
F EM+ + ++ L+ A G A E+++ + I G EV +
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP--EV-YT 618
Query: 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML- 408
+ +CS G D S + MK + G+ P F +VD+ G AG + +A+E +Q+
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677
Query: 409 --MPPNAVIWRTLLGAC 423
+ V + +L+GAC
Sbjct: 678 QGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 4e-12
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255
D+V +N++I+G+ GK EAL LF EM G++P+ YT L
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-11
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155
P++ T+NT+I GY + A++L+++M GIKP+ +TY L+ + K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 63/327 (19%), Positives = 129/327 (39%), Gaps = 51/327 (15%)
Query: 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI 170
+ T+I A+S E++ +M +G++ + HT+
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF------------------------ 510
Query: 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER----DLVAWNSVINGFASNGKPN 226
+L+ A G V A + +M + D V +N++I+ +G +
Sbjct: 511 -----------GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 227 EALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA 284
A + EM +E ++PD T+ +L ACA G + + + + + + V
Sbjct: 560 RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 285 LLDFYSKCGIIIAAQRVFREMRKR----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340
++ S+ G A ++ +M+K+ + V +S LV G +A E+ ++ G
Sbjct: 620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679
Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400
G V++ ++ ACS+ + ++ +K + P + ++ L + +A
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 401 YEYIQNM----LMPPNAVIWRTLLGAC 423
E + M L PN + + LL A
Sbjct: 739 LEVLSEMKRLGLC-PNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPD 243
V +N++I+G G+ EAL LF+EM G+EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 210 VAWNSVINGFASNGKPNEALTLFREMASEGV 240
V +NS+I+G+ GK EAL LF+EM +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 59/305 (19%), Positives = 115/305 (37%), Gaps = 48/305 (15%)
Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSG--IKPDTHTYPFLLKAISKLADVRMGE 163
P+ +N +I +S A ++ ++M I PD T L+KA + V +
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER----DLVAWNSVINGF 219
+ + + + V V+ + G A +++ M ++ D V ++++++
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNV 279
G ++A + ++ +G++ + SL AC+ WK L
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN-----------WKKAL---- 704
Query: 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS-WSTLVVGLA-VNGFGKEALELFKEME 337
+ Y + ++ R VS + L+ L N K ALE+ EM+
Sbjct: 705 -------ELYED----------IKSIKLRPTVSTMNALITALCEGNQLPK-ALEVLSEMK 746
Query: 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397
G P +T+ +L A D G + K++ GI P + C+ GL
Sbjct: 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCIT------GLC 799
Query: 398 KQAYE 402
+ +E
Sbjct: 800 LRRFE 804
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143
T+NT+I G ++ A+EL+ +M GI+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357
+ V+++TL+ G G +EAL+LF EM+ G P T+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEP 242
L +N+++ A G P+ AL + EM + G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 206 ERDLVAWNSVINGFASNGKPNEALTLFREM 235
+ D+V +N++I+G G+ +EA+ L EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 58/248 (23%), Positives = 90/248 (36%), Gaps = 41/248 (16%)
Query: 185 VHMYAAF---GHVKDACKVFELMSERDLVAWNSV-----INGFASNGKPNEALTLFREMA 236
+ Y G +KD + E M +R L+ + + EA + +
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 237 SEGVEPDGYTMVSLFSACAE-------LGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289
+ + + M L S CA L L L + A GL + + L+
Sbjct: 434 NPTLST--FNM--LMSVCASSQDIDGALRVLRLVQEA-------GLKADCKLYTTLISTC 482
Query: 290 SKCGIIIAAQRVFREMR----KRNAVSWSTLVVGLAVNG-----FGKEALELFKEMEIGG 340
+K G + A VF EM + N ++ L+ G A G FG + K ++
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK--- 539
Query: 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE-YGIMPKIEHFGCMVDLLGRAGLVKQ 399
P V F ++ AC G VD F MK E + I P G ++ AG V +
Sbjct: 540 --PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 400 AYEYIQNM 407
A E Q +
Sbjct: 598 AKEVYQMI 605
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341
V++++L+ G G +EALELFKEM+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 178 VFVQNSLVHMYAAFGHVKDACKVFELMSER----DLVAWNSVINGFA 220
V N+L+ Y G V++A K+F M +R ++ ++ +I+G
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 9e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGI 139
T+N++I GY ++ A+EL+ +M G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 35/144 (24%), Positives = 58/144 (40%), Gaps = 22/144 (15%)
Query: 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQT 165
P + T N +I E A+E+ S+M G+ P+T TY LL A + D +G
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
Query: 166 HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225
S A +G + + + + + C E+ V++ +G+P
Sbjct: 777 LSQAKEDGIKPNLVMCRCITGL----------CL---RRFEKACALGEPVVS--FDSGRP 821
Query: 226 ---NE----ALTLFREMASEGVEP 242
N+ AL ++RE S G P
Sbjct: 822 QIENKWTSWALMVYRETISAGTLP 845
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141
+ T+N ++ A++ +P LA+ + +M SG+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 616 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.76 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.69 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.62 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.61 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.44 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.43 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.43 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.41 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.4 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.39 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.31 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.31 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.27 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.23 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.13 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.12 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.12 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.09 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.07 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.94 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.87 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.87 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.86 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.85 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.82 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.76 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.72 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.71 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.71 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.68 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.67 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.65 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.64 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.62 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.61 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.61 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.6 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.54 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.44 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.42 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.37 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.37 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.35 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.33 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.3 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.29 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.24 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.24 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.22 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.22 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.19 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.11 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.09 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.08 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.07 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.04 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.03 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.97 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.97 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.84 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.82 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.66 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.62 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.6 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.59 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.58 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.56 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.55 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.49 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.46 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.45 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.36 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.31 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.31 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.31 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.27 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.27 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.25 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.22 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.21 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.21 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.18 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.18 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.16 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.15 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.12 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.1 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.08 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.07 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.02 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.99 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.99 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.94 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.87 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.85 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.8 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.69 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.69 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.68 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.68 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.66 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.66 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.64 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.63 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.59 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.58 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.5 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.5 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.42 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.39 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.29 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.28 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.27 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.16 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.14 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.85 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.69 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.68 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.68 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.68 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.52 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.33 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.33 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.15 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.14 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.95 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.85 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.83 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.74 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.66 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.59 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.48 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.38 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.35 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.27 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.16 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.91 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.88 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.75 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.71 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.62 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.57 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.54 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.39 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.33 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.19 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.96 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.59 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.48 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.13 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.11 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.75 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.53 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 91.4 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.09 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.74 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.63 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.41 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.35 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.13 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.13 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.08 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.04 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.97 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 89.66 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.46 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.32 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.15 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.82 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.49 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.39 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.82 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.81 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.8 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.6 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.01 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.95 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.64 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 86.22 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 86.07 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.89 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.84 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.63 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.47 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.27 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.99 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.98 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.19 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.1 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 83.79 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.79 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.75 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.7 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.45 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 81.37 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.27 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.01 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.98 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 80.46 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 80.44 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 80.29 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-117 Score=982.48 Aligned_cols=593 Identities=34% Similarity=0.607 Sum_probs=578.4
Q ss_pred hhhHHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHH
Q 007134 20 PCRVKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAH 97 (616)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~ 97 (616)
+.+|..+|.+|...++.. +....|.+++.+|+ +..+.++++|..+++.|+. ++++++|.|+.+|+++| ++++|+
T Consensus 103 ~~~Al~~f~~m~~~~~~~--~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~n~Li~~y~k~g-~~~~A~ 178 (697)
T PLN03081 103 HREALELFEILEAGCPFT--LPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMMNRVLLMHVKCG-MLIDAR 178 (697)
T ss_pred HHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHhcCC-CHHHHH
Confidence 455899999997654322 44678899999998 4788999999999999996 58999999999999999 999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCc
Q 007134 98 NIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL 177 (616)
Q Consensus 98 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 177 (616)
++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.++|..+.+.|+.+|
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (616)
..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
|++++|.++|..+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHH
Q 007134 338 IGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWR 417 (616)
Q Consensus 338 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~ 417 (616)
+.|+.||..||+++|.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|++.|++++|.+++++|++.||..+|+
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~ 498 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA 498 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEE
Q 007134 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFF 497 (616)
Q Consensus 418 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~ 497 (616)
+|+.+|+.+|+++.|..+++++++++|++...|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++++|.|+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFF 578 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhhcccCHHHHHHhhhhcCCCCCcEEEEecccccC
Q 007134 498 MGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCA 577 (616)
Q Consensus 498 ~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~ 577 (616)
+||..||+..+|++.++++..+|++.||.||+..+++++++++++..+.+||||||++||+++++++.||||+||||+|+
T Consensus 579 ~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~ 658 (697)
T PLN03081 579 SGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICK 658 (697)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhcCceEEEecCCccccccccccCCCCCC
Q 007134 578 DCHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRDYW 616 (616)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~d~~~~h~~~~g~csc~~~w 616 (616)
|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 659 dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 659 DCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-112 Score=965.17 Aligned_cols=586 Identities=37% Similarity=0.686 Sum_probs=569.4
Q ss_pred hhHHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHH
Q 007134 21 CRVKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHN 98 (616)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~ 98 (616)
.+|..+|..|...+..|. ...|..++.+|+ ++.+.|+++|..+++.|+. +|+.++|+||.+|+++| ++++|++
T Consensus 270 ~eAl~lf~~M~~~g~~Pd---~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g-~~~~A~~ 344 (857)
T PLN03077 270 LEGLELFFTMRELSVDPD---LMTITSVISACELLGDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLG-SWGEAEK 344 (857)
T ss_pred HHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-cchHHHHHHHHHHHhcC-CHHHHHH
Confidence 347777888877776664 677889999998 5789999999999999996 68999999999999999 9999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcH
Q 007134 99 IFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV 178 (616)
Q Consensus 99 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 178 (616)
+|+.|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++.
T Consensus 345 vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~ 424 (857)
T PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424 (857)
T ss_pred HHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007134 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258 (616)
Q Consensus 179 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 258 (616)
.++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999986 59999999999999999999
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
+++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHH
Q 007134 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT 418 (616)
Q Consensus 339 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ 418 (616)
.|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999997789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEEe
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFM 498 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~ 498 (616)
|+.+|..+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|.++++.|+++|+++.||+|||++++++|.|++
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~ 742 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLT 742 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhhcccCHHHHHHhhhhcCCCCCcEEEEecccccCc
Q 007134 499 GDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCAD 578 (616)
Q Consensus 499 ~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~~a~~~~~~~~~~~~~~~~~~~~~~c~~ 578 (616)
||.+||+.++||.+|+++..+|++.||.||+..++ +.++++|+..+++||||||++||+|+++++.||||+||+|+|+|
T Consensus 743 ~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~d 821 (857)
T PLN03077 743 DDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCEN 821 (857)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCcc
Confidence 99999999999999999999999999999999887 55778899999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhcCceEEEecCCccccccccccCCCC
Q 007134 579 CHLAIKLISKVYSREIVVRDRSRFHHFKDGHCSCRD 614 (616)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~d~~~~h~~~~g~csc~~ 614 (616)
||+++|+||++++|+|||||.+|||||+||+|||+|
T Consensus 822 ch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 822 CHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999998
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-72 Score=633.86 Aligned_cols=577 Identities=23% Similarity=0.359 Sum_probs=498.9
Q ss_pred hHHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 007134 22 RVKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99 (616)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~ 99 (616)
++..+|..|...+..|. ...+..++++|. +.+..|+++|..+++.|.. .++.++|+|+.+|+++| +++.|+++
T Consensus 69 ~A~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~n~li~~~~~~g-~~~~A~~~ 143 (857)
T PLN03077 69 QALKLLESMQELRVPVD---EDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS-LGVRLGNAMLSMFVRFG-ELVHAWYV 143 (857)
T ss_pred HHHHHHHHHHhcCCCCC---hhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHHHHhCC-ChHHHHHH
Confidence 38889999988776553 456788899998 4688999999999999985 68899999999999999 99999999
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHH
Q 007134 100 FSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVF 179 (616)
Q Consensus 100 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 179 (616)
|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..++++.+.++|..+++.|+.||..
T Consensus 144 f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (857)
T PLN03077 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223 (857)
T ss_pred HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 259 (616)
++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|...|+.||..||+.++.+|+..|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007134 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG 339 (616)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (616)
++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHH
Q 007134 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419 (616)
Q Consensus 340 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~l 419 (616)
|+.||..||+.++.+|++.|++++|.++++.|.+. |+.|+..+|++||++|++.|++++|.++|++|. +||..+|+++
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~m 461 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSI 461 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHH
Confidence 99999999999999999999999999999999886 999999999999999999999999999999997 5789999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeC---------
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELG--------- 490 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~--------- 490 (616)
+.+|.++|+.++|..+|++|.+.-+.+..+|..+..+|++.|.++++.+++..|.+.|+.++.......++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 99999999999999999999643333355666666666666666666666666665555443211000000
Q ss_pred ----------CE---EEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhh---cccCHHHHH
Q 007134 491 ----------NR---VFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDAL---SYHSEKIAI 554 (616)
Q Consensus 491 ----------~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~---~~h~~~~a~ 554 (616)
.. -..++.|+..|++.+++.+. +++|.+.|+.||..++...+..+.+.+.+ ....+.+..
T Consensus 542 ~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~l----f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL----FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 00 01235566677777777665 56788999999999987777666554443 122344444
Q ss_pred HhhhhcCCCCCcEEEEecccccCchhhHHHHHhhhcCc------eEEEecCCcccccccccc
Q 007134 555 AFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSR------EIVVRDRSRFHHFKDGHC 610 (616)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~------~~~~~d~~~~h~~~~g~c 610 (616)
.+|+.+...++. ++++.+.++|+..+|.++|.+|+.+ ..++..|+.+.+.+.|+-
T Consensus 618 ~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 618 KYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 577777766664 7899999999999999999999744 144556666666665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=527.54 Aligned_cols=449 Identities=17% Similarity=0.229 Sum_probs=408.4
Q ss_pred HHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHH
Q 007134 23 VKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100 (616)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f 100 (616)
+..+|..|.. +....|..++.+|+ ++.+.|.++|..|.+.|+. +|.++||+||.+|+++| ++++|.++|
T Consensus 425 Al~lf~~M~~-------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G-~vd~A~~vf 495 (1060)
T PLN03218 425 AFRFAKLIRN-------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSG-KVDAMFEVF 495 (1060)
T ss_pred HHHHHHHcCC-------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCc-CHHHHHHHH
Confidence 5555555542 23566788899988 5789999999999999985 68999999999999999 999999999
Q ss_pred hhCC----CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHH--hCC
Q 007134 101 SHVQ----DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR--NGF 174 (616)
Q Consensus 101 ~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~ 174 (616)
++|. .||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+
T Consensus 496 ~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 9998 5899999999999999999999999999999999999999999999999999999999999999986 678
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 007134 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSE----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250 (616)
Q Consensus 175 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (616)
.||..+|++||++|+++|++++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL 655 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999975 56799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCCH
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR----KRNAVSWSTLVVGLAVNGFG 326 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~ 326 (616)
+.+|++.|++++|.++|+.|.+.|+.|+..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|++
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999995 68999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cC-------
Q 007134 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AG------- 395 (616)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g------- 395 (616)
++|+++|++|...|+.||..||+.+|.+|++.|++++|.++|+.|.+. |+.||..+|++++.+|.+ ++
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~ 814 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVV 814 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999886 999999999999976432 22
Q ss_pred ------------CHHHHHHHHHhC---CCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHH-hcCCCCCCchhhhhHHhHh
Q 007134 396 ------------LVKQAYEYIQNM---LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL-QLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 396 ------------~~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~ 459 (616)
..++|..+|++| ++.||..||+.++.++...+..+.+..+++.+. .-.+.+..+|..|++.+.+
T Consensus 815 ~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 815 SFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred hhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 246799999999 699999999999987778888888888887763 2233346678889887732
Q ss_pred cccchHHHHHHHHHhhCCCccCCc
Q 007134 460 EQRWLNVQEVRRTMVKERVKKTPG 483 (616)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~~~~~ 483 (616)
. .++|..+++.|.+.|+.|...
T Consensus 895 ~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 895 Y--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred C--hHHHHHHHHHHHHcCCCCCcc
Confidence 2 368999999999999988653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-60 Score=524.53 Aligned_cols=521 Identities=17% Similarity=0.198 Sum_probs=434.9
Q ss_pred HhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 007134 43 RKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAE 120 (616)
Q Consensus 43 ~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 120 (616)
..|..++..|. +.++.+.+++..|.+.|..+.+...++.++..|.+.| .+++|.++|+.|+.||..+||.+|.+|++
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRNPTLSTFNMLMSVCAS 449 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 34556666654 5789999999999999987678888899999999998 99999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 200 (616)
.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++|.++
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcC----CCChhHHHHHHHHHHhCCCccHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhC
Q 007134 201 FELMS----ERDLVAWNSVINGFASNGKPNEALTLFREMAS--EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 201 f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (616)
|++|. .||.++||.||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|.+.|
T Consensus 530 f~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99996 38999999999999999999999999999976 6789999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHH
Q 007134 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR----KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVG 350 (616)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 350 (616)
+.|+..+||++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999997 46999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCcHHHHHHHHHHHHHcC
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM---LMPPNAVIWRTLLGACTIHG 427 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~pd~~~~~~ll~a~~~~g 427 (616)
+|.+|++.|++++|.++|+.|.+. |+.||..+|++||.+|++.|++++|+++|++| ++.||..||++|+.+|.+.|
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999875 99999999999999999999999999999988 58999999999999999999
Q ss_pred CcHHHHHHHHHHHhcCCC-CCCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcch
Q 007134 428 HSAIAEIARSTLLQLEPK-HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQT 506 (616)
Q Consensus 428 ~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 506 (616)
++++|.++++++.+.+.. +..+|..++.++. ++++++.++.+.+..-+ ++.. .......
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~----~g~~--------------~~~n~w~ 828 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD----SGRP--------------QIENKWT 828 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh----cccc--------------ccccchH
Confidence 999999999999765432 2556777776543 24555555544332210 0000 0000111
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCcccccccchhh-hhhhhcccCHHHHHHhhhhcCCCCCc--EEEEecccccCchhhHH
Q 007134 507 EEIHAMLAEITKKLKLEGYVPRTENVFADIEEEE-KEDALSYHSEKIAIAFMLVNTAPGTP--VRVVKNLRVCADCHLAI 583 (616)
Q Consensus 507 ~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~-~~~~~~~h~~~~a~~~~~~~~~~~~~--~~~~~~~~~c~~~~~~~ 583 (616)
.++. .++++|.+.|+.||..++...+ .|. +.... .....+--.+++.+.++++. ..+++.+ |..-.+|+
T Consensus 829 ~~Al----~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~ 900 (1060)
T PLN03218 829 SWAL----MVYRETISAGTLPTMEVLSQVL-GCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAF 900 (1060)
T ss_pred HHHH----HHHHHHHHCCCCCCHHHHHHHH-HHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHH
Confidence 2222 4578899999999988775544 221 11110 11122323345555555442 1234433 11225788
Q ss_pred HHHhhhcCce
Q 007134 584 KLISKVYSRE 593 (616)
Q Consensus 584 ~~~~~~~~~~ 593 (616)
.++..|..+.
T Consensus 901 ~l~~em~~~G 910 (1060)
T PLN03218 901 SLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHcC
Confidence 8888887764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=510.64 Aligned_cols=487 Identities=22% Similarity=0.320 Sum_probs=418.4
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHH
Q 007134 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183 (616)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 183 (616)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..+++.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4578899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 007134 184 LVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 263 (616)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC
Q 007134 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343 (616)
Q Consensus 264 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (616)
.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC 423 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~ 423 (616)
|..||++++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. +||..+|++|+.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHH
Confidence 9999999999999999999999999999886 999999999999999999999999999999997 68999999999999
Q ss_pred HHcCCcHHHHHHHHHHHh--cCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh-CCCccCCceeeEEeCCEEEEEEeCC
Q 007134 424 TIHGHSAIAEIARSTLLQ--LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK-ERVKKTPGHSLVELGNRVFEFFMGD 500 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~ 500 (616)
.++|+.++|.++|++|.+ ..|+ ..+|..++.+|.+.|.+++|.++|+.|.+ .|+.|+...-. .++.+.
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~--------~li~~l 472 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA--------CMIELL 472 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH--------hHHHHH
Confidence 999999999999999975 4555 66799999999999999999999999986 47776532110 123344
Q ss_pred CCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhhhhhhcccCHHHH-HHhhhhcCCCCCcEEEEecccccCch
Q 007134 501 RSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDALSYHSEKIA-IAFMLVNTAPGTPVRVVKNLRVCADC 579 (616)
Q Consensus 501 ~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~h~~~~a-~~~~~~~~~~~~~~~~~~~~~~c~~~ 579 (616)
...+..+++++.+ ++.+..|+..++-..+..+.+...+. -.+..+ ..+++.+...+.-+.+++.+..+|+.
T Consensus 473 ~r~G~~~eA~~~~-------~~~~~~p~~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 473 GREGLLDEAYAMI-------RRAPFKPTVNMWAALLTACRIHKNLE-LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HhcCCHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 5556666666553 45578888765433333322111110 001111 11233333233334566778999999
Q ss_pred hhHHHHHhhhcCceEE-------EecCCcccccccccc
Q 007134 580 HLAIKLISKVYSREIV-------VRDRSRFHHFKDGHC 610 (616)
Q Consensus 580 ~~~~~~~~~~~~~~~~-------~~d~~~~h~~~~g~c 610 (616)
.+|.+++..|..+.+- +--.+..|.|-.|-.
T Consensus 545 ~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 545 AEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 9999999999887432 112334566665543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-25 Score=254.02 Aligned_cols=412 Identities=13% Similarity=0.062 Sum_probs=258.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
+..+.+.++...+.+.. +.++.+++.+...|...| ++++|.+.|+++. ..+...+..+...+...|++++|.+.
T Consensus 445 ~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKG-DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred CCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566666666665543 345666667777777766 6777777776543 23455666666667777777777777
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---R 207 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~ 207 (616)
|+++...+ +.+..++..+...+...|+.++|..++..+.+.+ +.+...+..++..|.+.|++++|.++++.+.+ .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 77766543 2344556666666666677777777777666554 44455666666777777777777777766643 3
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (616)
+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+...+..+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45566666777777777777777777666542 2344556666666666677777777776666543 344566666666
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHH
Q 007134 288 FYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 364 (616)
.+.+.|++++|.++++.+.+ .+...|..+...+...|++++|++.|+++...+ |+..++..+..++.+.|+.++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHH
Confidence 66667777777776666653 244556666666666667777777766666543 3445555566666666666666
Q ss_pred HHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 365 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
.+.++.+.+ ..+.+...+..+...|.+.|+.++|.+.|+++. ..| +..+++.+...+...|+ ++|+..+++++++
T Consensus 756 ~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 666666655 233445666666666666666666666666652 223 45566666666666666 5566666666666
Q ss_pred CCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 443 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-24 Score=250.15 Aligned_cols=443 Identities=12% Similarity=0.033 Sum_probs=357.0
Q ss_pred hhhHHHHHhhCCCCCCCCcchhhHhhHHHHHHhhcCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 007134 20 PCRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99 (616)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~ 99 (616)
+-++...|.......+.. .........+....++.+.+...+..+++.. +........++..|.+.| ++++|.++
T Consensus 379 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~-~~~~A~~~ 453 (899)
T TIGR02917 379 FEKAAEYLAKATELDPEN--AAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSG-QFDKALAA 453 (899)
T ss_pred HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcC-CHHHHHHH
Confidence 345777777766554332 2222222222222356778888888887765 345667777888888988 99999999
Q ss_pred HhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCC
Q 007134 100 FSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES 176 (616)
Q Consensus 100 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 176 (616)
++.+.. ++..+|+.+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.++++.+++.. +.
T Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 454 AKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 987753 467789999999999999999999999988753 2334467777888888999999999999998875 56
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 253 (616)
+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|+.+++++.... +.+..++..+..+
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 610 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRA 610 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 778888999999999999999999988754 355678888999999999999999999987653 5567788889999
Q ss_pred HHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 007134 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+ .+..+|..++..+...|++++|.
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988764 45677788899999999999999999988754 35778899999999999999999
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 007134 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-M 409 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 409 (616)
++++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..++..+.+.|++++|.+.++++. .
T Consensus 690 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 690 KIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998765 445677778888888999999999999988753 3666778888999999999999999988773 3
Q ss_pred CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 410 PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 410 ~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
.| +..++..+...|...|+.++|...++++++..|+++..+..++.+|...|+ .+|...++++.+.
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 34 677888888899999999999999999999999988888899999999999 8899999888764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=205.98 Aligned_cols=106 Identities=65% Similarity=1.041 Sum_probs=95.5
Q ss_pred ceeeEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccccchhhh--------hhhhcccCHHHHH
Q 007134 483 GHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEK--------EDALSYHSEKIAI 554 (616)
Q Consensus 483 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~h~~~~a~ 554 (616)
|+||+++ |.|++||.+||+. ++..++...||.|++..+.+++.++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6889887 9999999999997 345567788999999988888777655 5688999999999
Q ss_pred HhhhhcCCCCCcEEEEecc-cccCchhhHHHHHhhhcCceEEEecCCcccccc
Q 007134 555 AFMLVNTAPGTPVRVVKNL-RVCADCHLAIKLISKVYSREIVVRDRSRFHHFK 606 (616)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~~~~~~~~~~~~~d~~~~h~~~ 606 (616)
+||++++ +|+||+ |+|+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 889999 999999999999999999999999999999997
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=179.85 Aligned_cols=374 Identities=16% Similarity=0.140 Sum_probs=194.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH-HHHH
Q 007134 79 GKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL-KAIS 154 (616)
Q Consensus 79 ~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~~~~ 154 (616)
+..+.+.|-..| ++++|+..++.+.+ ..+..|..+..++...|+.+.|...|.+.++ +.|+.+...+-+ ....
T Consensus 119 ysn~aN~~kerg-~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 119 YSNLANILKERG-QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHhc-hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 333444444444 55555555554432 2345555555555555555555555555554 334433322222 1222
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCCccHHHHH
Q 007134 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERD---LVAWNSVINGFASNGKPNEALTL 231 (616)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 231 (616)
..|.+++|...+.++++.. +.=..+|+.|...+-..|++..|..-|++..+-| ..+|-.|...|...+.+++|+..
T Consensus 196 a~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 3455555555555555432 1223445555555555555555555555554322 23455555555555555555555
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 007134 232 FREMASEGVEPD-GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--- 307 (616)
Q Consensus 232 ~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--- 307 (616)
|.+.... .|+ ...+..+...|...|.++.|...+++.++.. +.-...|+.|..++-..|++.+|.+.|++...
T Consensus 275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 5555442 232 2344444445555556666666555555542 22244555555555556666666666655442
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHH
Q 007134 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFG 385 (616)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 385 (616)
.-..+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...+-+.|++++|...+++.. .+.|+ ...|+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~ 426 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALS 426 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHH
Confidence 1234455555566666666666666655554 33332 345555555556666666666665554 44555 45555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
.|...|-..|+.+.|.+.+.+. .+.|. ...++.|...+...|++.+|++.++.+++++|+.+.+|..+..++.--.+|
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcc
Confidence 6666666666666666555444 34453 345555666666666666666666666666666666555555544433333
Q ss_pred h
Q 007134 464 L 464 (616)
Q Consensus 464 ~ 464 (616)
.
T Consensus 507 ~ 507 (966)
T KOG4626|consen 507 T 507 (966)
T ss_pred c
Confidence 3
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-18 Score=197.14 Aligned_cols=407 Identities=13% Similarity=0.020 Sum_probs=288.0
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--CC---hhHHHHH------------HH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--PN---IFTWNTM------------IR 116 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~~---~~~~~~l------------i~ 116 (616)
+..+.+...+..+++.. |.++.++..|...|.+.| ++++|+..|++..+ |+ ...|..+ ..
T Consensus 283 g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g-~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 283 GQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQG-DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 45566666666666654 456666777777777776 77777777765432 21 1123222 23
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHH
Q 007134 117 GYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKD 196 (616)
Q Consensus 117 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 196 (616)
.+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHH
Confidence 4556677777777777776642 1233445556666777777777777777777653 334455555666653 346677
Q ss_pred HHHHHhhcCCCC------------hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHH
Q 007134 197 ACKVFELMSERD------------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264 (616)
Q Consensus 197 A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 264 (616)
|...++.++... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 777776654321 1234455667778899999999999988753 224556677888889999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC----h---------hhHHHHHHHHHHcCCHHHHHH
Q 007134 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN----A---------VSWSTLVVGLAVNGFGKEALE 331 (616)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~----~---------~~~~~li~~~~~~g~~~~A~~ 331 (616)
..++.+.+.. +.+...+..+...+.+.|+.++|...++.+.... . ..+..+...+...|+.++|++
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999888753 3345555555666778899999999998876421 1 112345667888999999999
Q ss_pred HHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CC
Q 007134 332 LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MP 410 (616)
Q Consensus 332 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~ 410 (616)
+++. .+++...+..+...+.+.|+.++|...|+.+.+. -+.+...+..++..|...|++++|++.++... ..
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 9872 2344456677888899999999999999999863 33458889999999999999999999999874 45
Q ss_pred C-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC------chhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 411 P-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG------DYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 411 p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
| +..++..+..++...|++++|...++++++..|+++. .+..++.++...|++++|.+.++....
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 4567788888999999999999999999988776543 344568899999999999999988753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=179.67 Aligned_cols=358 Identities=14% Similarity=0.166 Sum_probs=309.6
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcH-HHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD-THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLV-FVQNSL 184 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~L 184 (616)
-..+|..+...+-..|+.++|+++|+.|.+. +|+ ...|..+..++...|+.+.|.+.+..+++. .|+. .+.+.+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 4568999999999999999999999999984 554 457999999999999999999999999885 4543 344556
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCch
Q 007134 185 VHMYAAFGHVKDACKVFELMSE--RD-LVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMVSLFSACAELGAL 260 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~ 260 (616)
....-..|++++|...+.+..+ |. .+.|+.|...+-.+|+...|++.|++.... .|+ ...|..+...+...+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcc
Confidence 6666778999999998887654 32 568999999999999999999999999874 454 35788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
+.|...+.++.... +....++..|...|...|.++-|...|++.... =...||.|..++...|+..+|...|.+..
T Consensus 269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999998877653 445677778888899999999999999998653 35689999999999999999999999988
Q ss_pred hCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcH-
Q 007134 338 IGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNA- 413 (616)
Q Consensus 338 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~- 413 (616)
.. .|+. ...+.|...+...|.+++|..+|....+ +.|. ....+.|...|-++|++++|+..+++. .++|+.
T Consensus 348 ~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 348 RL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred Hh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 73 4543 6788899999999999999999998874 4566 677899999999999999999999877 588974
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..++.+...|...|+.+.|.+.+.+++..+|.-.+++..|+.+|...|++.+|+.-++...+.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 799999999999999999999999999999999999999999999999999999999988764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-17 Score=192.32 Aligned_cols=440 Identities=13% Similarity=0.067 Sum_probs=208.8
Q ss_pred hhHHHHHhhCCCCCCCCcchhhHhhHHHHHHhhcCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHH
Q 007134 21 CRVKSLYHSTPASQENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIF 100 (616)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f 100 (616)
-+|...|.......+... .....+...+..-.+..+.+......+++.. |.++.+...|...+...| +.++|+..|
T Consensus 129 ~eA~~~~~~~l~~~p~~~-~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g-~~~eAl~~l 204 (1157)
T PRK11447 129 EEALASYDKLFNGAPPEL-DLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSG-RRDEGFAVL 204 (1157)
T ss_pred HHHHHHHHHHccCCCCCh-HHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccC-CHHHHHHHH
Confidence 347777777665544332 1112222222111245677888888888775 567888888888888888 899999998
Q ss_pred hhCCCCC------hhHH-----------------HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCC
Q 007134 101 SHVQDPN------IFTW-----------------NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA 157 (616)
Q Consensus 101 ~~m~~~~------~~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~ 157 (616)
+++.... ...| ...+..+-.......|...+.++......|+... ......+...|
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g 283 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSG 283 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCC
Confidence 8764311 0111 1101100001111122222222222111111100 01122333445
Q ss_pred CcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh---hHHHHH------------HHHHH
Q 007134 158 DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDL---VAWNSV------------INGFA 220 (616)
Q Consensus 158 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~---~~~~~l------------i~~~~ 220 (616)
++++|...++.+++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+ ...+.
T Consensus 284 ~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 284 QGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555555555555432 23444455555555555555555555554432 110 111111 22334
Q ss_pred hCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhH-------------------
Q 007134 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNV------------------- 281 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~------------------- 281 (616)
+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...
T Consensus 363 ~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 4555555555555554432 1233334444445555555555555555554432 112222
Q ss_pred -----------------------HHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007134 282 -----------------------NNALLDFYSKCGIIIAAQRVFREMRK--R-NAVSWSTLVVGLAVNGFGKEALELFKE 335 (616)
Q Consensus 282 -----------------------~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ 335 (616)
+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|...|++
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 23344555666777777777776653 2 445566677777777777777777777
Q ss_pred HHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh---------hhHHHHHHHHHhcCCHHHHHHHHH
Q 007134 336 MEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI---------EHFGCMVDLLGRAGLVKQAYEYIQ 405 (616)
Q Consensus 336 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A~~~~~ 405 (616)
+.+. .|+ ...+..+...+...++.++|...++.+... ...++. ..+..+.+.+...|+.++|.++++
T Consensus 521 al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 521 LAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7653 232 223333333455677777777777765321 000110 001122233344444444444444
Q ss_pred hCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 406 NMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 406 ~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
.-+ ++...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.++..
T Consensus 598 ~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 598 QQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred hCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 211 122333344444444455555555555554444444444444444444444444444444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-18 Score=184.50 Aligned_cols=385 Identities=11% Similarity=-0.019 Sum_probs=264.3
Q ss_pred HHHHHHhCCCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHcCCC
Q 007134 82 LIYAIVSLSFPMSYAHNIFSHVQ--DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD-THTYPFLLKAISKLAD 158 (616)
Q Consensus 82 li~~y~~~~~~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~ 158 (616)
....|.+.| +++.|.+.|++.. .|+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+..++...|+
T Consensus 133 ~G~~~~~~~-~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 133 KGNKAYRNK-DFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCC
Confidence 344455555 6666666666533 245566666666666666666666666666653 333 3355556666666666
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH-----------------------
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSV----------------------- 215 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l----------------------- 215 (616)
+++|...+..+...+-..+... ..++.-+.+....+.+...++.-+. +..++..+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 6666666655544321111111 1111111111111222222222111 11111111
Q ss_pred -------HH-H-----HHhCCCccHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchh
Q 007134 216 -------IN-G-----FASNGKPNEALTLFREMASEG-VEP-DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN 280 (616)
Q Consensus 216 -------i~-~-----~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 280 (616)
+. + ....+++++|++.|++....+ ..| +...+..+...+...|++++|...++..++.. +....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 00 0 012357889999999998765 234 34567777777889999999999999998764 34466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHh
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACS 356 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 356 (616)
.+..+...|...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .| +...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHH
Confidence 788889999999999999999998753 36788999999999999999999999999875 34 4566777888899
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcH-H-------HHHHHHHHHHHcC
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNA-V-------IWRTLLGACTIHG 427 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~-~-------~~~~ll~a~~~~g 427 (616)
+.|++++|...|+...+ ..+.+...|+.+...+...|++++|.+.|++. ...|+. . .++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999986 33445788999999999999999999999885 344421 1 1222223334469
Q ss_pred CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 428 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++++|...++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998888899999999999999999999988653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-19 Score=182.38 Aligned_cols=298 Identities=15% Similarity=0.109 Sum_probs=168.0
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C------hhHHHHHHHHHHhCCCc
Q 007134 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-D------LVAWNSVINGFASNGKP 225 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~g~~ 225 (616)
+...|+++.|...+..+++.+ +.+..++..+...|.+.|++++|..+++.+... + ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344456666666666665543 333445555666666666666666666555431 1 12345555555556666
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007134 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 305 (616)
++|+.+|+++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+....
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 66666665555431 23344455555555555555555555555544321111000
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC--hhh
Q 007134 306 RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK--IEH 383 (616)
Q Consensus 306 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 383 (616)
....|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+. .|+ ...
T Consensus 179 ---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~ 251 (389)
T PRK11788 179 ---IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEV 251 (389)
T ss_pred ---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHH
Confidence 01123344555556666666666666665532 112334555556666666666666666666542 122 344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh---
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY--- 459 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 459 (616)
++.++.+|.+.|++++|...++++. ..|+...+..++..+...|++++|...++++++..|++. .+..+...+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~ 330 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccC
Confidence 5666677777777777777776652 456655556677777777777777777777777777654 33333433332
Q ss_pred cccchHHHHHHHHHhhCCCccCCce
Q 007134 460 EQRWLNVQEVRRTMVKERVKKTPGH 484 (616)
Q Consensus 460 ~g~~~~a~~~~~~m~~~~~~~~~~~ 484 (616)
.|+.+++..+++.|.+++++++|.+
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCCE
Confidence 4577788888888887777777753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-18 Score=175.94 Aligned_cols=294 Identities=13% Similarity=0.080 Sum_probs=222.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCc---HHHHHHHHHHHH
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESL---VFVQNSLVHMYA 189 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~ 189 (616)
.....+...|++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33445677899999999999999864 23445788888899999999999999999988643222 356888999999
Q ss_pred hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 007134 190 AFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266 (616)
Q Consensus 190 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (616)
+.|++++|.++|+++.+ .+..+++.++..+.+.|++++|++.|+++.+.+..++....
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------------- 179 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI------------------- 179 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH-------------------
Confidence 99999999999999975 46778999999999999999999999999876533221100
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC
Q 007134 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343 (616)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (616)
...+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|+++|+++...+...
T Consensus 180 ------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 180 ------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred ------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 11123445556666666666666666543 234466677778888888888888888887643222
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHH
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGA 422 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a 422 (616)
...++..+..++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++ ...|+..++..++..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~ 324 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 2456777888888889999999988888753 466666788888899999999999999766 467888888888877
Q ss_pred HHH---cCCcHHHHHHHHHHHh
Q 007134 423 CTI---HGHSAIAEIARSTLLQ 441 (616)
Q Consensus 423 ~~~---~g~~~~a~~~~~~~~~ 441 (616)
+.. +|+.+++...++++++
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hhhccCCccchhHHHHHHHHHH
Confidence 654 5588888888887754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-16 Score=175.84 Aligned_cols=385 Identities=9% Similarity=0.018 Sum_probs=193.7
Q ss_pred HHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHcCCC
Q 007134 83 IYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD-THTYPFLLKAISKLAD 158 (616)
Q Consensus 83 i~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~ 158 (616)
+....-.| +.++|++++..... .+...+..+...+.+.|++++|+++|++.++. .|+ ...+..+...+...|+
T Consensus 22 ~~ia~~~g-~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAG-QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 33344444 55555555554332 23333555555555555555555555555543 222 2333444445555555
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHH
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREM 235 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (616)
+++|...++.+++.. +.+.. +..+..+|...|+.++|...++++.+ | +...+..+...+.+.|..++|++.+++.
T Consensus 99 ~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 555555555555542 33333 55555555555555555555555443 2 3334444555555555555555555443
Q ss_pred HHCCCCCCHH------HHHHHHHHHH-----hcCch---HHHHHHHHHHHHh-CCCCchh--HHHH---HHHHHHhcCCH
Q 007134 236 ASEGVEPDGY------TMVSLFSACA-----ELGAL---ALGRRAHTYVWKV-GLSDNVN--VNNA---LLDFYSKCGII 295 (616)
Q Consensus 236 ~~~g~~p~~~------t~~~ll~a~~-----~~~~~---~~a~~~~~~~~~~-g~~~~~~--~~~~---li~~y~~~g~~ 295 (616)
.. .|+.. ....++.... ..+++ +.|.+.++.+.+. ...|+.. ...+ .+.++...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 32 12110 0011111111 11112 4455555555433 1111111 0001 01223344666
Q ss_pred HHHHHHHHhcCCCC--hhh--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC---CHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 296 IAAQRVFREMRKRN--AVS--WSTLVVGLAVNGFGKEALELFKEMEIGGFVP---GEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 296 ~~A~~~f~~m~~~~--~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
++|.+.|+.+.+.+ ... -..+...|...|++++|+..|+++....... .......+..++...|++++|..++
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 66666666665431 111 1113455666666666666666655432110 1123344444556666666666666
Q ss_pred HHhHHhhC----------CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHH
Q 007134 369 KRMKDEYG----------IMPK---IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAE 433 (616)
Q Consensus 369 ~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~ 433 (616)
+.+..... -.|+ ...+..+...+...|++++|++.++++. ..| +...+..+...+...|++++|+
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 66654210 0112 1233455566667777777777776652 334 4566666667777777777777
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..++++++++|+++..+..++..+.+.|++++|.++++.+.+
T Consensus 414 ~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 414 NELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777777777777666666666667777777777777766654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-16 Score=172.87 Aligned_cols=326 Identities=10% Similarity=-0.032 Sum_probs=223.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 192 (616)
-++..+.+.|++++|+.+++..+.....+ ...+..++.+....|+++.|.+.++.+++.. +.+...+..+...|.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 34556666777777777777776653222 2334444455556777777777777777664 445666777777777777
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 007134 193 HVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269 (616)
Q Consensus 193 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 269 (616)
++++|...|++..+ .+...|..+...+.+.|++++|...++++......+ ...+.. +..+...|++++|...+..
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHH
Confidence 77777777777654 245567777777777788887777777766543222 222222 2346667777777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCc
Q 007134 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKE----ALELFKEMEIGGFV 342 (616)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~ 342 (616)
+.+....++......+...+.+.|++++|...|+.... .+...+..+...|.+.|++++ |+..|++..+. .
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--N 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--C
Confidence 76654333344445556677778888888888877653 255667777888888888775 78888888764 3
Q ss_pred CC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHH-HHHH
Q 007134 343 PG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAV-IWRT 418 (616)
Q Consensus 343 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~-~~~~ 418 (616)
|+ ...+..+...+...|++++|...++...+. .|+ ...+..+...|.+.|++++|.+.++++. ..|+.. .+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 44 456777778888888888888888888753 243 5567777888888899999988888774 556543 3444
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
+..++...|+.++|...++++++..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 56678888999999999999988888753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-15 Score=168.00 Aligned_cols=213 Identities=11% Similarity=0.003 Sum_probs=159.7
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 007134 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKE 335 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~ 335 (616)
++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444555444444332 3333333334444578888888888876653 3444566667777888888888888888
Q ss_pred HHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-c
Q 007134 336 MEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-N 412 (616)
Q Consensus 336 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d 412 (616)
..+.. |+. ..+..+.......|++++|...+++..+ +.|+...|..+..++.+.|+.++|+..+++. ...| +
T Consensus 568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~ 642 (987)
T PRK09782 568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN 642 (987)
T ss_pred HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 87653 433 2333333445566999999999998874 4477888999999999999999999999887 4667 5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 413 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
...+..+..++...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 67888888899999999999999999999999999999999999999999999999999887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-15 Score=166.07 Aligned_cols=386 Identities=10% Similarity=-0.042 Sum_probs=294.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV---QDPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
+..+.+.++........ +.+...+..+...|...| ++++|..+|+.. ...+...+..+...+...|++++|+..
T Consensus 29 g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 29 GQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56777777777776533 455667888889999998 999999999984 334677888999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLV 210 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 210 (616)
+++..+. .|+...+..+..++...|+.+.|...++.+++.. +.+..++..+..++.+.|..++|++.++.... +..
T Consensus 106 l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~ 181 (765)
T PRK10049 106 AKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA 181 (765)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence 9999886 3443337778888899999999999999999975 55667777788899999999999999998776 211
Q ss_pred --------HHHHHHHHHH-----hCCCc---cHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHhcCchHHHHHHHH
Q 007134 211 --------AWNSVINGFA-----SNGKP---NEALTLFREMASE-GVEPDGY-TMV----SLFSACAELGALALGRRAHT 268 (616)
Q Consensus 211 --------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~~~~~~a~~~~~ 268 (616)
....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...++.++|...|+
T Consensus 182 ~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~ 261 (765)
T PRK10049 182 EKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQ 261 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1222222222 12233 7789999998854 2233221 111 11445567799999999999
Q ss_pred HHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007134 269 YVWKVGLS-DNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-------AVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340 (616)
Q Consensus 269 ~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 340 (616)
.+.+.+.+ |+. ....+...|...|++++|...|+++...+ ...+..+..++.+.|++++|.++++++....
T Consensus 262 ~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 262 RLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 99887632 322 22335778999999999999999986432 2345566778899999999999999998742
Q ss_pred C-----------cCCH---HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 341 F-----------VPGE---VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 341 ~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (616)
. .|+. ..+..+...+...|++++|+++++.+.. ..+.+...+..+...+...|++++|++.+++
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 2332 2345566778899999999999999986 3445578899999999999999999999988
Q ss_pred CC-CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 407 ML-MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 407 m~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.. ..|| ...+..+...+...|++++|+.+++++++..|+++..
T Consensus 419 al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 419 AEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 73 6775 5677788888999999999999999999999998744
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-16 Score=169.78 Aligned_cols=327 Identities=11% Similarity=-0.035 Sum_probs=265.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 007134 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFA 220 (616)
Q Consensus 144 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 220 (616)
.-..-++..+.+.|+++.|..+++..+... +.+......++..+...|++++|...|+++.. .+...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345567778889999999999999998875 44455556666777889999999999999865 35667888999999
Q ss_pred hCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007134 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 300 (616)
+.|++++|+..|++..... +.+...+..+..++...|+.++|...+..+...... +...+..+. .+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHHHH
Confidence 9999999999999998752 334567778888999999999999999988776432 333443333 4788999999999
Q ss_pred HHHhcCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH----HHHHHHHhH
Q 007134 301 VFREMRKR----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE----GFSYFKRMK 372 (616)
Q Consensus 301 ~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~ 372 (616)
.++.+.+. +...+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++ |...|+.+.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99987653 23344555678899999999999999998754 2345667778888999999986 899999987
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
+. -+.+...+..+...+.+.|++++|...+++.. ..| +...+..+..++...|++++|...++++++.+|+++..+
T Consensus 278 ~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 278 QF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 52 23347789999999999999999999998873 556 456788889999999999999999999999999877666
Q ss_pred hhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 451 VLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 451 ~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
..++.++...|++++|.+.++...+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 677889999999999999999887653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-15 Score=166.34 Aligned_cols=397 Identities=12% Similarity=0.003 Sum_probs=286.2
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
+..+.+...+..+++.. | ++..+..+...|.+.| ++++|+..++...+ .++..|..+..+|...|++++|+.-
T Consensus 141 ~~~~~Ai~~y~~al~~~--p-~~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECK--P-DPVYYSNRAACHNALG-DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHHhcC--C-chHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46788999999988764 3 4678888899999998 99999999986543 4677899999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCC-----------------------------CcHHHH
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFE-----------------------------SLVFVQ 181 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-----------------------------~~~~~~ 181 (616)
|......+. .+......++..... ..+.......++.... .+....
T Consensus 217 ~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 217 LTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 987765421 122222222221111 1111111111111100 000000
Q ss_pred HHHHHHH------HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHH
Q 007134 182 NSLVHMY------AAFGHVKDACKVFELMSER------DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMV 248 (616)
Q Consensus 182 ~~Li~~y------~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 248 (616)
..++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++..+. .|+ ...|.
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~ 369 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYI 369 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHH
Confidence 1111111 1236899999999987642 3457888889999999999999999999875 444 55788
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC
Q 007134 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGF 325 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~ 325 (616)
.+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+.+.|+
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 88888999999999999999998874 55678899999999999999999999998864 356678888999999999
Q ss_pred HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh-h-------hHHHHHHHHHhcCCH
Q 007134 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI-E-------HFGCMVDLLGRAGLV 397 (616)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~li~~~~~~g~~ 397 (616)
+++|+..|++..... +.+...+..+...+...|++++|...|+..... .|+. . .++.....+...|++
T Consensus 449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhH
Confidence 999999999988742 224577888888999999999999999998752 2321 1 122222334457999
Q ss_pred HHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 398 KQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 398 ~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+.... ......+.+|.++.....
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e--------~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE--------LVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH--------HHHHHHHHHHHHHHHHHH
Confidence 9999999885 45664 567899999999999999999999999988765322 122334555665554443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-14 Score=154.20 Aligned_cols=424 Identities=10% Similarity=0.018 Sum_probs=307.6
Q ss_pred hHHHHHHhhcCHHHHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHH-HH--HHHHHh
Q 007134 45 CITLLQVCASSKHKLKQVHAFSIRHGVPLNN-PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWN-TM--IRGYAE 120 (616)
Q Consensus 45 ~~~~l~ac~~~~~~~~~~h~~~~~~g~~~~~-~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~-~l--i~~~~~ 120 (616)
-..++.+-.++...|...+..+++.. |.+ +.++ .++..+...| +.++|+..+++...|+...+. .+ ...|..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G-~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAG-RDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcC-CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34455555578889999999998876 444 3445 8888888888 999999999998876444433 33 457778
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKV 200 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 200 (616)
.|++++|+++|+++.+... -|...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.
T Consensus 115 ~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 8999999999999998642 23456667778888999999999999998876 45555555565566556777679999
Q ss_pred HhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCc---hHHH
Q 007134 201 FELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM------VSLFSAC-----AELGA---LALG 263 (616)
Q Consensus 201 f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~a~-----~~~~~---~~~a 263 (616)
++++.+ | +...+..+..+..+.|-...|+++..+-... +.+...-. ...++.- ....+ .+.|
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a 270 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA 270 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 999865 3 5667788889999999999998877653321 11111111 1111100 01112 3444
Q ss_pred HHHHHHHHHh-CC-CCchhH-HHH---HHHHHHhcCCHHHHHHHHHhcCCC--Chh--hHHHHHHHHHHcCCHHHHHHHH
Q 007134 264 RRAHTYVWKV-GL-SDNVNV-NNA---LLDFYSKCGIIIAAQRVFREMRKR--NAV--SWSTLVVGLAVNGFGKEALELF 333 (616)
Q Consensus 264 ~~~~~~~~~~-g~-~~~~~~-~~~---li~~y~~~g~~~~A~~~f~~m~~~--~~~--~~~~li~~~~~~g~~~~A~~l~ 333 (616)
..-++.+... +- ++.... ..+ .+-++.+.|+..++.+.|+.+... .+. +--++..+|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 4455554442 22 222222 233 344677889999999999999854 233 4456789999999999999999
Q ss_pred HHHHhCC-----CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhC------------CCCC-hhhHHHHHHHHHhcC
Q 007134 334 KEMEIGG-----FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG------------IMPK-IEHFGCMVDLLGRAG 395 (616)
Q Consensus 334 ~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------------~~p~-~~~~~~li~~~~~~g 395 (616)
+++.... ..++......|.-++...+++++|..+++.+.+... ..|| ...+..++..+...|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 9986642 122333456788899999999999999999987311 1122 233455677889999
Q ss_pred CHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 396 LVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 396 ~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
++.+|++.++++. ..| |..++..+...+...|.+.+|+..++.+..++|++.......+..+...|+|.+|.++.+..
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999883 556 88899999999999999999999999999999999999999999999999999999998877
Q ss_pred hhC
Q 007134 474 VKE 476 (616)
Q Consensus 474 ~~~ 476 (616)
.+.
T Consensus 511 ~~~ 513 (822)
T PRK14574 511 ISR 513 (822)
T ss_pred Hhh
Confidence 553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-13 Score=155.14 Aligned_cols=263 Identities=13% Similarity=0.031 Sum_probs=212.6
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (616)
+...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...+..+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45567777777766 7888899988887764 466655545555667899999999999987654 344445667778
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhhHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHH
Q 007134 288 FYSKCGIIIAAQRVFREMRKRNAVSWSTL---VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 364 (616)
.+.+.|+.++|.+.|+...+.++..++.. .......|++++|+..+++..+ ..|+...+..+..++.+.|+.++|
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998876544433333 3333445999999999999987 457788888999999999999999
Q ss_pred HHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 365 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
...|+.... .-+.+...++.+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..+++++++
T Consensus 629 ~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999985 23334778888989999999999999999877 3566 6789999999999999999999999999999
Q ss_pred CCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 443 EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 443 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
+|++.......+.+..+..+++.|.+.++..-..++.
T Consensus 707 ~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 707 IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999888889999999999999999988876654443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-13 Score=146.95 Aligned_cols=383 Identities=9% Similarity=0.029 Sum_probs=279.5
Q ss_pred HHHhCCCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch-HHHH--HHHHHcCCC
Q 007134 85 AIVSLSFPMSYAHNIFSHVQDPNIF---TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFL--LKAISKLAD 158 (616)
Q Consensus 85 ~y~~~~~~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~l--l~~~~~~~~ 158 (616)
...+.| +++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+...|+
T Consensus 43 i~~r~G-d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 43 IRARAG-DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHhCC-CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCC
Confidence 345777 899999999987753322 23388888999999999999999987 343333 3333 457778899
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh--CCCccHHHHHHHHHH
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS--NGKPNEALTLFREMA 236 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 236 (616)
+++|.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999985 55577788889999999999999999999986443332224444444 566666999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchh------HHHHHHHHH---H--hcCC---HHHHHHHH
Q 007134 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVN------VNNALLDFY---S--KCGI---IIAAQRVF 302 (616)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~~li~~y---~--~~g~---~~~A~~~f 302 (616)
+.. +-+...+.....++.+.|-...|.++...-... +.+... ....+|..- . ...+ .+.|+.-+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 874 345667778888889999888888766542211 111100 000111100 0 1112 34455555
Q ss_pred HhcCC-----CCh-hhH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 303 REMRK-----RNA-VSW----STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 303 ~~m~~-----~~~-~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+.+.. |.. ..| --.+.++...|+..++++.|+.|...|.+....+-..+..+|...+.+++|..+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 55442 211 122 23466888899999999999999998866455688899999999999999999999997
Q ss_pred HhhC----CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCC--------------CC--cH-HHHHHHHHHHHHcCCcHH
Q 007134 373 DEYG----IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM--------------PP--NA-VIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 373 ~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~p--d~-~~~~~ll~a~~~~g~~~~ 431 (616)
...+ .+++......|.-+|..++++++|..+++++.- .| |- .....++..+.-.|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6422 233455567889999999999999999988721 13 32 234445667889999999
Q ss_pred HHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 432 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
|++.+++++...|.|+.....+++++...|...+|.+.++....
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999977654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-12 Score=132.68 Aligned_cols=411 Identities=12% Similarity=0.052 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCCchHHHH
Q 007134 56 KHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN------IFTWNTMIRGYAESANPLLAVE 129 (616)
Q Consensus 56 ~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~ 129 (616)
...|.++...+-+.. +.+|++.|.|.+.|.-.| ++..+..+-.++...+ ..+|-.+.++|-..|++++|..
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 445566665555544 467788888888777776 7777777766554322 3456677788888888888888
Q ss_pred HHHHHHHCCCCCCcch--HHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHhh
Q 007134 130 LYSKMHVSGIKPDTHT--YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG----HVKDACKVFEL 203 (616)
Q Consensus 130 l~~~m~~~g~~pd~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~~~A~~~f~~ 203 (616)
.|.+..+. .||.++ +..+.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 87666653 345433 4456677777888888888888877763 555667777777777664 44555555555
Q ss_pred cCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh---
Q 007134 204 MSER---DLVAWNSVINGFASNGKPNEALTLFREM----ASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV--- 273 (616)
Q Consensus 204 ~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--- 273 (616)
..++ |..+|-.+...|-+..- ..++..|... ...+-.+.....+.+.......|+++.|...+......
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 4432 33444444443333322 2224443332 22233344444555555555555555555555444332
Q ss_pred CCCCch------hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------------------------CCh
Q 007134 274 GLSDNV------NVNNALLDFYSKCGIIIAAQRVFREMRK-------------------------------------RNA 310 (616)
Q Consensus 274 g~~~~~------~~~~~li~~y~~~g~~~~A~~~f~~m~~-------------------------------------~~~ 310 (616)
...++. .+--.+...+-..++.+.|.+.|..+.+ .|+
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np 564 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP 564 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence 011111 1111122223333344444444443332 233
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCHHHHHHHHHHHhc------------CCChHHHHHHHHHhHHhhCC
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGVLYACSH------------CGMVDEGFSYFKRMKDEYGI 377 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~ 377 (616)
..|.-+...+.....+..|.+-|...... ...+|.++..+|.+.|.. .+..++|+++|..+.+ .-
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~d 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--ND 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cC
Confidence 33444444444444444444433333221 112444444444443321 2334455555555544 23
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-C-CCCCchhhh
Q 007134 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE-P-KHSGDYVLL 453 (616)
Q Consensus 378 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-p-~~~~~~~~l 453 (616)
+.|...-|.+.-.++..|++.+|.++|.+.. ..-+..+|..+...|...|++..|++.|+..++.. + +++.....|
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 3344445555555556666666666665542 11233455555566666666666666665554322 1 123334455
Q ss_pred hHHhHhcccchHHHHHHHHHhh
Q 007134 454 SNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 454 ~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+.++.+.|++.+|.+.....+.
T Consensus 723 ara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 5566666666666555554443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-12 Score=132.08 Aligned_cols=367 Identities=13% Similarity=0.034 Sum_probs=255.8
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC--CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHH
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIK--PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 183 (616)
.|++..|.|...|.-.|++..+..+...+...... .-...|-.+.+++-..|++++|...|.+..+..-..-+..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46777788888888888888888888877764211 1123466777888888888888888888776542222444556
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCC----CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE--R-DLVAWNSVINGFASNG----KPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (616)
|..+|.+.|+++.+...|+.+.+ | +..+.-.|...|+..+ ..++|..++.+..+.- +.|...|..+...+..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 78888888888888888888754 2 4456666666676664 3455666666555432 3456666666655544
Q ss_pred cCchHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Chh------hHHHHHHH
Q 007134 257 LGALALGRRAHTYV----WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-------NAV------SWSTLVVG 319 (616)
Q Consensus 257 ~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------~~~------~~~~li~~ 319 (616)
. ++.....++..+ ...+-.+.+.+.|.+...+...|++++|...|...... |.. +--.+...
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 3 333335555444 34555677889999999999999999999999876532 221 12224455
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCcCCHHH-HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 007134 320 LAVNGFGKEALELFKEMEIGGFVPGEVT-FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 398 (616)
+-..++.+.|.+.|...... .|.-++ |..++......+...+|...+..... ....+...++-+...+.+...+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhc
Confidence 55677899999999998874 465543 44444333345788889988888876 44555666667777888888887
Q ss_pred HHHHHHHhC----CCCCcHHHHHHHHHHHHH------------cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 399 QAYEYIQNM----LMPPNAVIWRTLLGACTI------------HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 399 ~A~~~~~~m----~~~pd~~~~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
.|.+-|+.. ...+|.++..+|.+.|.+ .+..++|++.|.++++.+|.|.-+-.-++-+++..|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 777744433 345788888888886642 2346789999999999999988777889999999999
Q ss_pred chHHHHHHHHHhhCCC
Q 007134 463 WLNVQEVRRTMVKERV 478 (616)
Q Consensus 463 ~~~a~~~~~~m~~~~~ 478 (616)
+.+|..+|.+.++...
T Consensus 662 ~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATS 677 (1018)
T ss_pred chHHHHHHHHHHHHHh
Confidence 9999999999988654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-12 Score=119.91 Aligned_cols=333 Identities=17% Similarity=0.178 Sum_probs=232.1
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 185 (616)
++..++..||.++++-...+.|.++|++-.....+.+..+||.+|.+-. +..++.+..+|+...+.||..++|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 5667999999999999999999999999998888999999999998754 334588999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHH----hhcC----CCChhHHHHHHHHHHhCCCccH-HHHHHHHHHHC----CCCC----CHHHHH
Q 007134 186 HMYAAFGHVKDACKVF----ELMS----ERDLVAWNSVINGFASNGKPNE-ALTLFREMASE----GVEP----DGYTMV 248 (616)
Q Consensus 186 ~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~p----~~~t~~ 248 (616)
...++.|+++.|++.+ .+|. +|...+|..+|..+.+.++..+ |...+.+.... -++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 9999999998766554 4453 4888999999999999888755 44445554332 2222 556788
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHH
Q 007134 249 SLFSACAELGALALGRRAHTYVWKVG----LSDN---VNVNNALLDFYSKCGIIIAAQRVFREMRK----RNAVSWSTLV 317 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li 317 (616)
+.++.|.+..+.+.|.++++.+.... +.|+ ...|..+..+.+....++.-...|+.|.. ++..+-..++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 99999999999999999998775321 2232 34556777888888889999999999875 4555666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC-Ch-------------HHHHHHHHHhHH----hhCCCC
Q 007134 318 VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG-MV-------------DEGFSYFKRMKD----EYGIMP 379 (616)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~-------------~~a~~~~~~m~~----~~~~~p 379 (616)
.+....|.++-.-+++..|...|-.-+...-.-++.-+++.. .. +-|..+++.... ......
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 788888888888888888877664333333323333333221 00 001111111100 002223
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
.....++..-.+.|.|+.++|.+++.-. +..|......-|+.+..+.++...|..+++.+...
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 3455667777788888888887777544 23344334445555666666777777777666443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-11 Score=128.47 Aligned_cols=317 Identities=13% Similarity=0.112 Sum_probs=226.6
Q ss_pred HcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCCccHHHH
Q 007134 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM---SERDLVAWNSVINGFASNGKPNEALT 230 (616)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (616)
...|+++.|.+++.++++.. +.....|..|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|++++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33488888888888888775 556677788888888888888877665433 33466777777777778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCCHHHHHHHHHhcC
Q 007134 231 LFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNA----LLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 231 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~m~ 306 (616)
.|.+.++.. +++...+..-...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888877763 44555555566677777888888887777777543333333333 3445556666677777777665
Q ss_pred C--C---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------------------------cCCHHHHHHHHHH
Q 007134 307 K--R---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF---------------------------VPGEVTFVGVLYA 354 (616)
Q Consensus 307 ~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~p~~~t~~~ll~a 354 (616)
. . +...+|.++..|.+..+++.|......+..... .++...+ -+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 4 1 445677778888888888888887777765111 1222121 11222
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCC---CcHHHHHHHHHHHHHcCCc
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMP--KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMP---PNAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---pd~~~~~~ll~a~~~~g~~ 429 (616)
+.+....+....+.....+. .+.| +...|.-+.++|.+.|++.+|+++|..+.-. -+...|-.+...+...|..
T Consensus 387 L~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 33444444444444444442 5333 4778999999999999999999999988422 2578999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
++|.+.+++++.+.|++..+-..|+.+|.+.|+.++|.+++..|.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999875
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=2e-14 Score=141.71 Aligned_cols=254 Identities=16% Similarity=0.118 Sum_probs=109.5
Q ss_pred HHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007134 216 INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF-SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294 (616)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (616)
...+.+.|++++|++++++......+|+...|..++ ..+...++.+.|.+.++.+...+. .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 455666677777777775544332234444444433 344456677777777777766542 245556666666 67788
Q ss_pred HHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 295 IIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG-FVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 295 ~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
+++|.+++...-+ ++...+..++..+...++++++.+++++..... ..++...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888776533 456677778888888999999999999876532 3456667777888888999999999999998
Q ss_pred HHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 372 KDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 372 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.+. .|+ ....+.++..+...|+.+++.++++... ...|...|..+..++...|+.++|...++++.+..|+++.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 863 354 7778889999999999998877776652 2345668889999999999999999999999999999999
Q ss_pred chhhhhHHhHhcccchHHHHHHHHHh
Q 007134 449 DYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 449 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
....+++++...|+.++|.+++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-10 Score=111.51 Aligned_cols=380 Identities=13% Similarity=0.100 Sum_probs=239.8
Q ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhH-------HHHHHHHHHhcCCch-HHHHHHHHHHHCC-------
Q 007134 74 NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFT-------WNTMIRGYAESANPL-LAVELYSKMHVSG------- 138 (616)
Q Consensus 74 ~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~-------~~~li~~~~~~g~~~-~A~~l~~~m~~~g------- 138 (616)
..+..-|.|+.|.+.. .+.++.-+++.|...++.. .-.|+..| .+.++- --.+.|-.|...|
T Consensus 114 ~~V~~E~nL~kmIS~~--EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~-Ns~~~~~~E~~~Fv~~~~~~E~S~~sW 190 (625)
T KOG4422|consen 114 LQVETENNLLKMISSR--EVKDSCILYERMRSENVDVSEKVQLELFRLVTYY-NSSNVPFAEWEEFVGMRNFGEDSTSSW 190 (625)
T ss_pred hhhcchhHHHHHHhhc--ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhh-cCCCCcchhHHHHhhcccccccccccc
Confidence 4455678899988775 5999999999987644321 11122222 222211 1122333332221
Q ss_pred ------------CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-
Q 007134 139 ------------IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS- 205 (616)
Q Consensus 139 ------------~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~- 205 (616)
.+-+..|+.++|.++++--..+.|.+++++......+.+..++|.+|.+-.-..+ .++..+|.
T Consensus 191 K~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis 266 (625)
T KOG4422|consen 191 KSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMIS 266 (625)
T ss_pred ccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHH
Confidence 2346678999999999999999999999988777678888899998876543333 44555553
Q ss_pred ---CCChhHHHHHHHHHHhCCCccH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH-HHHHHHHHHHh--C-
Q 007134 206 ---ERDLVAWNSVINGFASNGKPNE----ALTLFREMASEGVEPDGYTMVSLFSACAELGALAL-GRRAHTYVWKV--G- 274 (616)
Q Consensus 206 ---~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~~--g- 274 (616)
.||..|+|+++++..+.|+++. |++++.+|++.|+.|...+|..+|..+.+.++..+ +..+...+... |
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 5899999999999999998765 56788889999999999999999988888777644 33333333321 1
Q ss_pred -C----CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 275 -L----SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----------NAVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 275 -~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
+ +.|...+..-++.+....+.+-|.++-.-.... ...-|..+....++....+.-+..|+.|.-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 224455556667777888888888877655422 123455667777888888888999999987
Q ss_pred CCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHH---H
Q 007134 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV---I 415 (616)
Q Consensus 339 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~---~ 415 (616)
.-.-|+..+...+++|..-.|.++-..+++..++. +|-....... ++.+.++-.-...|+.. -
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~-------------eeil~~L~~~k~hp~tp~r~Q 492 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLR-------------EEILMLLARDKLHPLTPEREQ 492 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHH-------------HHHHHHHhcCCCCCCChHHHH
Confidence 77778888989999998888888888888888765 2322221111 22222222222333322 2
Q ss_pred HHHHHHHHHHcCCcHHHHH-HHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 416 WRTLLGACTIHGHSAIAEI-ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 416 ~~~ll~a~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
+..+..-|.. ++.++.+ .-.++.+.+ -.+......+.++.+.|+.++|.+++....+++
T Consensus 493 l~~~~ak~aa--d~~e~~e~~~~R~r~~~-~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 493 LQVAFAKCAA--DIKEAYESQPIRQRAQD-WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHHHHH--HHHHHHHhhHHHHHhcc-CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 2222222211 1111111 111222111 123345566677789999999999998886543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-11 Score=119.31 Aligned_cols=346 Identities=12% Similarity=0.072 Sum_probs=211.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCC------------cH
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES------------LV 178 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~ 178 (616)
.|.+--.+.+.|+++.|+..|+...+. .||-.+--.++-.+...|+-++.++.|..++.....+ +.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 444445567778888888888877764 4676654444444555677888888888777643222 22
Q ss_pred HHHHHHHH-----HHHhcC--CHHHHH----HHHhhcCCCChh---HHH------------------HHHHHHHhCCCcc
Q 007134 179 FVQNSLVH-----MYAAFG--HVKDAC----KVFELMSERDLV---AWN------------------SVINGFASNGKPN 226 (616)
Q Consensus 179 ~~~~~Li~-----~y~~~g--~~~~A~----~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~ 226 (616)
...|.-|. -.-+.. +.+++. ++..-...++-. -|. .-..-|.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 22221111 111111 111111 111111122211 010 1123477889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHH----------------------------------HHhcCchHHHHHHHHHH
Q 007134 227 EALTLFREMASEGVEPDGYTMVSL--FSA----------------------------------CAELGALALGRRAHTYV 270 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~l--l~a----------------------------------~~~~~~~~~a~~~~~~~ 270 (616)
.|+++++-+....-+.-+..-+.+ +.- ....|+++.|...+.+.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 998888877654322211111111 111 11235666666666666
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH
Q 007134 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347 (616)
Q Consensus 271 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (616)
....-......|| +.-.|-+.|++++|+..|-.+. ..++...-.+...|-...+..+|++++.+.... ++.|...
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 5543222233333 2223556677777777776553 335555555666677777777777777655442 3334566
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHH-HH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLGAC-TI 425 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~-~~ 425 (616)
.+.|...|-+.|+-.+|.+.+-.--+ -++-++.+..-|..-|....-+++|+.+|++.. +.|+..-|..++..| ++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 77777888888888888877654432 344567777778888888888899999998874 889999999988876 78
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
.|++++|.++++.....-|.+......|..+....|.
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8999999999999998899988888888888877664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-11 Score=122.43 Aligned_cols=286 Identities=13% Similarity=0.007 Sum_probs=176.0
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHH--HHHHHHHHhcCCHHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQ--NSLVHMYAAFGHVKDAC 198 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~Li~~y~~~g~~~~A~ 198 (616)
.|++++|.+.+....+..-.| ...|.....+....|+++.+.+.+..+.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777776666554431111 112322334446777788888887777664 3443222 23356777778888888
Q ss_pred HHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC
Q 007134 199 KVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275 (616)
Q Consensus 199 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 275 (616)
+.+++..+ .+......+...|.+.|++++|++++..+.+.+..++. ....+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 87777654 24556777777788888888888888888776543221 1110000
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHH
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 352 (616)
.++..++....+..+.+...++++.+++ .++.....+..++...|+.++|.+++++..+. .||... .++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHH
Confidence 0111122222222334444455554432 36666777777777888888888888777663 344321 123
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCcHH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~ 431 (616)
.+....++.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|+.. ...|+..++..|...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334557788888888777763 3334556777788888888888888888776 467888777788888888888888
Q ss_pred HHHHHHHHHhcC
Q 007134 432 AEIARSTLLQLE 443 (616)
Q Consensus 432 a~~~~~~~~~~~ 443 (616)
|.+.+++.+.+.
T Consensus 380 A~~~~~~~l~~~ 391 (398)
T PRK10747 380 AAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhh
Confidence 888888876543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.5e-11 Score=115.16 Aligned_cols=212 Identities=13% Similarity=0.064 Sum_probs=170.8
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELF 333 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 333 (616)
.|+.-.+..-++.+++.... +...|--+..+|....+-++..+.|+.... .|..+|..-.+.+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46777788888888876533 233366667789999999999999998764 36778888888888889999999999
Q ss_pred HHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 007134 334 KEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP 411 (616)
Q Consensus 334 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 411 (616)
++.+. +.|+ ...|..+--+..+.+.+++++..|++.++ .++.-...|+-....+...+++++|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99987 4454 46777777777889999999999999998 55556889999999999999999999999765 3444
Q ss_pred c---------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 412 N---------AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 412 d---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+ +.+-.+++-.-.+ +++..|..+++++++++|....+|..|+.+-.+.|+.++|+++|++-.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 2233333333333 899999999999999999999999999999999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.9e-12 Score=127.20 Aligned_cols=243 Identities=15% Similarity=0.126 Sum_probs=178.3
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHH-HHH
Q 007134 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG--LSDNVNVNNALLDFYSKCGIIIA-AQR 300 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~-A~~ 300 (616)
+.++|+..|.+... .+.-......-+..+|..++++++++.+|+.+.+.. ...+..+|.+.+--+-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 45778888887433 234444566667788888888888888888887643 23356666666544332211111 122
Q ss_pred HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCC
Q 007134 301 VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379 (616)
Q Consensus 301 ~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 379 (616)
+. .+.+..+.+|-++..+|.-+++.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+.... .
T Consensus 413 Li-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~ 484 (638)
T KOG1126|consen 413 LI-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----V 484 (638)
T ss_pred HH-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----C
Confidence 22 22234678899999999999999999999998887 456 567777777777778888889888887764 5
Q ss_pred ChhhHHH---HHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhh
Q 007134 380 KIEHFGC---MVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454 (616)
Q Consensus 380 ~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 454 (616)
|..+|++ +.-.|.+.++++.|+-.|++. .+.| +.++...+...+.+.|+.++|++++++++.++|.++-.-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 5555554 556788999999999888777 4777 6677777888888889999999999999999999888888888
Q ss_pred HHhHhcccchHHHHHHHHHhh
Q 007134 455 NLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 455 ~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++...+++++|.+.++++++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH
Confidence 888889999999999988876
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.9e-11 Score=122.04 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=198.7
Q ss_pred cCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCchHHHHH
Q 007134 191 FGHVKDACKVFELMSER--D-LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMV--SLFSACAELGALALGRR 265 (616)
Q Consensus 191 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 265 (616)
.|+++.|++.+...++. + ...|-.......+.|++++|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765542 1 222333334446788888888888888663 45543332 23456677788888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hhHHHHHHHHHHcCCHHHHHHHHH
Q 007134 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA-----------VSWSTLVVGLAVNGFGKEALELFK 334 (616)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~ 334 (616)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887765 55677788888888888888888888888775322 133344444444555667777777
Q ss_pred HHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-c
Q 007134 335 EMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-N 412 (616)
Q Consensus 335 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d 412 (616)
.+.+. .+.+......+..++...|+.++|..+++...+. +|+... .++.+....++.+++++.+++. ...| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76442 2446677788889999999999999999988753 344422 2233334569999999999877 3556 5
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 413 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+..+...|...+++++|.+.|+++++.+|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678899999999999999999999999999984 4678999999999999999999986643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-10 Score=116.79 Aligned_cols=288 Identities=14% Similarity=0.005 Sum_probs=165.2
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 007134 120 ESANPLLAVELYSKMHVSGIKPDTHT-YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198 (616)
Q Consensus 120 ~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 198 (616)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 467788888777766553 344332 33334556666777777777777765432222234444566677777777777
Q ss_pred HHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCchHHHHHHHHHHHHhC
Q 007134 199 KVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS-LFSACAELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 199 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g 274 (616)
+.++.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.+. ..+.. -..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~-------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAE-------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHH--------------------
Confidence 77777654 2445666777777777777777777777776653322 22211 11110
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHH---
Q 007134 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF--- 348 (616)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--- 348 (616)
..+++.-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||....
T Consensus 233 --------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 233 --------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred --------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0011111111122333334444432 36667777777778888888888888877764 3333211
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCcHHHHHHHHHHHHH
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN--M-LMPPNAVIWRTLLGACTI 425 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~pd~~~~~~ll~a~~~ 425 (616)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...||...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111122334666677777766665332222224455666777777777777777773 2 356776666677777777
Q ss_pred cCCcHHHHHHHHHHH
Q 007134 426 HGHSAIAEIARSTLL 440 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~ 440 (616)
.|+.++|.+++++.+
T Consensus 383 ~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 383 AGDKAEAAAMRQDSL 397 (409)
T ss_pred cCCHHHHHHHHHHHH
Confidence 777777777777653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-10 Score=107.42 Aligned_cols=282 Identities=14% Similarity=0.078 Sum_probs=167.0
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCC
Q 007134 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER------DLVAWNSVINGFASNGK 224 (616)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~ 224 (616)
.++-.....+++.+-.......|++.+...-+....++-...++|+|+.+|+++.+. |..+|..++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 444455566666666666666777666666666666666677777777777777653 344555444 233322
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304 (616)
Q Consensus 225 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (616)
.+ +.++.+-.-.=-+--..|...+.+-|+-.++.+.|...|...++.+ +....+|+.+..-|....+...|.+.++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 21 1111111110012223456666666666777777777777777665 44556677777777777777777777766
Q ss_pred cCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC
Q 007134 305 MRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380 (616)
Q Consensus 305 m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 380 (616)
..+ +|-..|-.|.++|.-.+.+.-|+-.|++.... +| |...+.+|..+|.+.+++++|++.|..... .-..+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte 465 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTE 465 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccc
Confidence 543 35666777777777777777777777776663 33 456677777777777777777777777665 22234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-------L-MPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
...+..|.++|-+.++.++|...|++- + +.|.. ..-.-|..-+.+.+++++|.....+...
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 456667777777777777776666433 1 22211 1112234445666666666665555543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-11 Score=123.54 Aligned_cols=275 Identities=11% Similarity=-0.002 Sum_probs=166.4
Q ss_pred HHHHHHHHhhcCC--CChh-HHHHHHHHHHhCCCccHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 007134 194 VKDACKVFELMSE--RDLV-AWNSVINGFASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 194 ~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (616)
..+|...|...++ .|+. ....+..+|...+++++|.++|+...+.. ..-+...|+++|--+-+ +-+...+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 3556666666443 2222 22344566666666666666666665432 11244555555543311 11111221
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH
Q 007134 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345 (616)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (616)
+-.-.-.+..+.+|.++.++|+-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.|..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rh 488 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRH 488 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchh
Confidence 1111112445677777777777777777777777776643 345566666666667777777777776654 33332
Q ss_pred -HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHH
Q 007134 346 -VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLG 421 (616)
Q Consensus 346 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~ 421 (616)
..|-.+...|.+.+.++.|+-.|+.+. .+.|. .+...++...+.+.|+.++|++++++.- ..| |+..----+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 345556667777777777777777765 34454 5555566667777777777777777662 334 4444334445
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.+...+++++|...++++.++-|++...|..++.+|.+.|+.+.|..-|..+.+.+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 56667777777777777777777777777777777877777777777777776544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=127.55 Aligned_cols=256 Identities=17% Similarity=0.120 Sum_probs=92.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH-HHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 007134 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL-LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192 (616)
Q Consensus 114 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 192 (616)
+...+.+.|++++|++++++-.....+|+...|-.+ ...+...++.+.|.+.++.++..+ +.++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 355566677777777777544333223444444333 334445667777777777776654 2245556666666 5777
Q ss_pred CHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 007134 193 HVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEG-VEPDGYTMVSLFSACAELGALALGRRAHTY 269 (616)
Q Consensus 193 ~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 269 (616)
++++|.++++..-+ ++...+..++..+.+.++++++.+++++..... .+++...|......+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777765532 455566777777777788888888877765432 344556666677777777888888888887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH
Q 007134 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346 (616)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 346 (616)
+++.. +.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|++..... +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 77764 4456677777888888888777666665543 3466677788888888888888888888877632 23556
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
....+..++...|+.++|.++.+++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 666777778888888888777766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-10 Score=117.17 Aligned_cols=279 Identities=11% Similarity=0.049 Sum_probs=176.3
Q ss_pred CCCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHcCCCcHHHH
Q 007134 89 LSFPMSYAHNIFSHVQD--PN-IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH--TYPFLLKAISKLADVRMGE 163 (616)
Q Consensus 89 ~~~~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~~~~~~~~~~~a~ 163 (616)
.| +++.|++.+.+..+ |+ ...+-.....+.+.|+++.|.+.|.+..+. .|+.. ........+...|+++.|.
T Consensus 97 ~g-~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EG-DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CC-CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 45 89999999987664 33 233444456677889999999999998764 35553 3333477788899999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHH----HHHHHhCCCccHHHHHHHHHH
Q 007134 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVAWNSV----INGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~ 236 (616)
+.++.+.+.. +.+..+...+..+|.+.|++++|.+.++...+. +...+..+ ..++...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999986 667788999999999999999999999988754 22222211 111122222222223333333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Chhh--
Q 007134 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--NAVS-- 312 (616)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~-- 312 (616)
... | + ..+.+...+..+...+...|+.++|.+++++..+. |...
T Consensus 253 ~~~--p-----------------------------~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~ 300 (409)
T TIGR00540 253 KNQ--P-----------------------------R-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS 300 (409)
T ss_pred HHC--C-----------------------------H-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence 221 1 0 01124455555555556666666666666555432 2111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH---HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 007134 313 -WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV---TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388 (616)
Q Consensus 313 -~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 388 (616)
+..........++.+.+++.+++..+. .|+.. ...++...|.+.|++++|.+.|+.... +...|+...+..+.
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-~~~~p~~~~~~~La 377 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA-CKEQLDANDLAMAA 377 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-hhcCCCHHHHHHHH
Confidence 111112223345667777777766653 34433 344666777788888888888884322 14457777777888
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 007134 389 DLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~ 406 (616)
..+.+.|+.++|.+++++
T Consensus 378 ~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 888888888888888775
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-10 Score=109.43 Aligned_cols=391 Identities=12% Similarity=0.046 Sum_probs=261.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhhCCC----CChh-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH--
Q 007134 79 GKYLIYAIVSLSFPMSYAHNIFSHVQD----PNIF-TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK-- 151 (616)
Q Consensus 79 ~~~li~~y~~~~~~~~~A~~~f~~m~~----~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-- 151 (616)
...|.+-|.... -..+|+..++-+.. ||.- .--.+-..|.+..++.+|+..|+-.+..-...+..+-..+++
T Consensus 204 l~nlaqqy~~nd-m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 204 LFNLAQQYEAND-MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHhhhhH-HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 344555565555 67788887765543 2221 112344567788889999999987766433333334433443
Q ss_pred --HHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----------------CChhHHH
Q 007134 152 --AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE----------------RDLVAWN 213 (616)
Q Consensus 152 --~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----------------~~~~~~~ 213 (616)
.+.+.|.++.|..-|+++.+. .|+..+.-.|+-.|..-|+-++..+.|.+|.. |+....|
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 356889999999999999886 57777766777788889999999999998752 2222233
Q ss_pred HH-----HHHHHhCC--CccHHHHHHHHHHHCCCCCCHH-------------HHH--------HHHHHHHhcCchHHHHH
Q 007134 214 SV-----INGFASNG--KPNEALTLFREMASEGVEPDGY-------------TMV--------SLFSACAELGALALGRR 265 (616)
Q Consensus 214 ~l-----i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~-------------t~~--------~ll~a~~~~~~~~~a~~ 265 (616)
.- +.-.-+.+ +.++++-.--++..--+.||-. .+. .-..-+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 22 22222221 2233333333333222333321 000 01223567899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHH------------------------------------HHhcCCHHHHHHHHHhcCCCC
Q 007134 266 AHTYVWKVGLSDNVNVNNALLDF------------------------------------YSKCGIIIAAQRVFREMRKRN 309 (616)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~------------------------------------y~~~g~~~~A~~~f~~m~~~~ 309 (616)
++....+..-.......|.|-.. ....|++++|.+.|++....|
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 88877654322222222222111 123578888988888888777
Q ss_pred hhhHHHHH---HHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHH
Q 007134 310 AVSWSTLV---VGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386 (616)
Q Consensus 310 ~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 386 (616)
...-.+|. -.+-..|+.++|++.|-++..- +..+......+.+.|....+..+|++++-+... -++.|......
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSK 597 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHH
Confidence 66544443 3466789999999999887652 233556677788888889999999999888764 56667889999
Q ss_pred HHHHHHhcCCHHHHHHHHHh-CCCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccch
Q 007134 387 MVDLLGRAGLVKQAYEYIQN-MLMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~-m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 464 (616)
|.+.|-+.|+-..|.+..-. ...-| |..+..-|..-|....-.++++..|+++.-+.|+.......++.++.+.|++.
T Consensus 598 l~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHH
Confidence 99999999999999887644 34334 77777777777888888899999999998889986555556777888999999
Q ss_pred HHHHHHHHHhh
Q 007134 465 NVQEVRRTMVK 475 (616)
Q Consensus 465 ~a~~~~~~m~~ 475 (616)
.|.++++....
T Consensus 678 ka~d~yk~~hr 688 (840)
T KOG2003|consen 678 KAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-09 Score=104.52 Aligned_cols=254 Identities=13% Similarity=0.078 Sum_probs=186.1
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCC
Q 007134 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL--SDNVNVNNALLDFYSKCGI 294 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~ 294 (616)
.+|....+.+++++-.......|++-+...-+-...+.-...++++|..+|+.+.+... -.|..+|..++-.--.+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444456666666666666666554444444444444566677777777777777631 1245556555432222222
Q ss_pred HHH-HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 295 IIA-AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 295 ~~~-A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+.- |..++ .+.+-.+.|.-.+..-|+-.++.++|...|++..+. .|.. ..|+.+..-|....+...|.+-++.+.
T Consensus 315 Ls~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 315 LSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 221 22222 222223445555667777888999999999999885 4443 567777788999999999999999998
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
+ -.+.|-..|-.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|.+++..+..+...+
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 6 44567899999999999999999999999888 4778 789999999999999999999999999998877777899
Q ss_pred hhhhHHhHhcccchHHHHHHHHHhh
Q 007134 451 VLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 451 ~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..|+++|.+.++.++|.+.+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987655
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-09 Score=106.91 Aligned_cols=372 Identities=10% Similarity=0.021 Sum_probs=218.6
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHH---
Q 007134 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD--THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQN--- 182 (616)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--- 182 (616)
...|-.=...+-..|..-.+..+....+.-|+.-. ..||..-...|.+.+.++-++.+|..+++. ++.+..+|.
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~ 557 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAA 557 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHH
Confidence 34454444455555555555555555544443321 124555555555555555555555555443 233333333
Q ss_pred -------------------------------HHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHH
Q 007134 183 -------------------------------SLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEA 228 (616)
Q Consensus 183 -------------------------------~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 228 (616)
....-+-..|++..|+.++...-+ .+...|-+-+..-..+.++++|
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHH
Confidence 333444445555555555554432 1344555555555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 007134 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR 308 (616)
Q Consensus 229 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~ 308 (616)
..+|.+.... .|+...|.--++.---++..++|.++++..++. ++.-...|-.+...+-+.++++.|.+.|..-.+.
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665542 344444444444444455666666666665554 2333455556666666666666666666554432
Q ss_pred ---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHH
Q 007134 309 ---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG 385 (616)
Q Consensus 309 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 385 (616)
.+..|-.+...=-+.|+...|..++++....+ +-|...|...|..=.+.|+.+.|..+..+..+ .++.+...|.
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWa 791 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWA 791 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHH
Confidence 34456655555555666666666666665543 22445666666666666777777666666665 3444455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchH
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 465 (616)
.-|-+..+.++-..+.+.+++-. -|..+.-++...+....+++.|..-|.++++.+|++.+++..+-..+...|.-++
T Consensus 792 EaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHH
Confidence 66666666666555555555543 3445555666677788899999999999999999999999988889999999988
Q ss_pred HHHHHHHHhhCCCccCCceeeEEeC
Q 007134 466 VQEVRRTMVKERVKKTPGHSLVELG 490 (616)
Q Consensus 466 a~~~~~~m~~~~~~~~~~~s~~~~~ 490 (616)
-.+++++... ..|.-|..|..+.
T Consensus 870 ~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 870 QKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHhc--cCCCCCcHHHHHh
Confidence 8888887754 2344455555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-08 Score=103.63 Aligned_cols=348 Identities=16% Similarity=0.138 Sum_probs=265.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHh---hCCCCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFS---HVQDPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~---~m~~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
++.+.|..+...+++.. |.++..|-.|...|-..| +.+++...+- +....|...|..+.....+.|++++|.-.
T Consensus 153 g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 68899999999999987 568889999999999998 9999988774 45556889999999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHH----HHHHHHHhcCCHHHHHHHHhhcCC
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQN----SLVHMYAAFGHVKDACKVFELMSE 206 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~Li~~y~~~g~~~~A~~~f~~~~~ 206 (616)
|.+.++.. +++...+-.=...|-+.|+...|..-+.++.....+.|..-.- ..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999864 3444444445667888999999999999998875333333222 345566777877999999887654
Q ss_pred -----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH----------------------HH----HHHHHHHH
Q 007134 207 -----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY----------------------TM----VSLFSACA 255 (616)
Q Consensus 207 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------t~----~~ll~a~~ 255 (616)
-+...+|.++..|.+..+++.|+.....+......+|.. .| ..+.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 244578999999999999999999998887622222211 11 12222345
Q ss_pred hcCchHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhhHHHHHHHHHHcCCHHHH
Q 007134 256 ELGALALGRRAHTYVWKVG--LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR----NAVSWSTLVVGLAVNGFGKEA 329 (616)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A 329 (616)
.+...+....+.....+.. ...++..+.-+.++|...|++.+|.++|..+... +...|--+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 6666777777777777766 4556788899999999999999999999998753 677899999999999999999
Q ss_pred HHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHH-------hhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 007134 330 LELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKD-------EYGIMPKIEHFGCMVDLLGRAGLVKQAY 401 (616)
Q Consensus 330 ~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~-------~~~~~p~~~~~~~li~~~~~~g~~~~A~ 401 (616)
++.|...... .|+. ..-..|-..+.+.|+.++|.+.+..+.. ..+..|+...-....+.|.+.|+.++=.
T Consensus 469 ~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999874 4554 3444556667889999999999998531 1244555556666778889999988755
Q ss_pred HHHHhC
Q 007134 402 EYIQNM 407 (616)
Q Consensus 402 ~~~~~m 407 (616)
+....|
T Consensus 547 ~t~~~L 552 (895)
T KOG2076|consen 547 NTASTL 552 (895)
T ss_pred HHHHHH
Confidence 544443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-09 Score=100.31 Aligned_cols=217 Identities=14% Similarity=0.089 Sum_probs=147.8
Q ss_pred cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHhcCCHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFES---LVFVQNSLVHMYAAFGHVKDA 197 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~A 197 (616)
+.++++|+++|-+|.+.. +-+..+-.++-+.+-+.|..+.|..+|+.+.++.--+ -..+.-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 367888999999988742 1222344567777888899999999999888753111 133556688889999999999
Q ss_pred HHHHhhcCCCC---hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCchHHHHHHHHHH
Q 007134 198 CKVFELMSERD---LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY----TMVSLFSACAELGALALGRRAHTYV 270 (616)
Q Consensus 198 ~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~ 270 (616)
+.+|..+.+.+ ..+...|+..|-+..+|++|++.-+++...+-++..+ -|--+........+++.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999987633 3456778999999999999999999998876555443 2333344444455667777777766
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----hHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007134 271 WKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV----SWSTLVVGLAVNGFGKEALELFKEMEIG 339 (616)
Q Consensus 271 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (616)
.+.+ +..+...-.+.+.+...|+++.|.+.++.+.+.|.. +-..|..+|.+.|+.++....+.++.+.
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6553 233444445566666667777777776666655432 3455566666666666666666666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.9e-08 Score=94.30 Aligned_cols=410 Identities=10% Similarity=0.037 Sum_probs=264.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhcCCchHHHHHH
Q 007134 55 SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--PNI-FTWNTMIRGYAESANPLLAVELY 131 (616)
Q Consensus 55 ~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~l~ 131 (616)
+...|+.|+..++.... .+..+|-..+.+=-++. .+..|+.+|+.... |-+ ..|-.-+-.=-..|+...|.++|
T Consensus 88 e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk-~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDY--RNITLWLKYAEFEMKNK-QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhh-hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 45567777777776553 45667777777777777 78888888876432 222 24444444444567888888888
Q ss_pred HHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C--
Q 007134 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--R-- 207 (616)
Q Consensus 132 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-- 207 (616)
++-.. ..|+...|.+.++.=.+.+..+.|+.+++..+-. .|++..|---...=.++|.+..|..+|+...+ .
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 77765 5788888888888877888888888888877653 47777777777777778888888888876653 1
Q ss_pred --ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHH--------HHHHHHHhCC
Q 007134 208 --DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD--GYTMVSLFSACAELGALALGRR--------AHTYVWKVGL 275 (616)
Q Consensus 208 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~--------~~~~~~~~g~ 275 (616)
+...+++...-=.++..++.|--+|+-.++. ++-+ ...|.....-=-+-|+...... -++..++.+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 2223344333334456667777777666554 2222 2233322222223343322221 122333332
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHH--------HHHHcCCHHHHHHHHHHHHhCCCc
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----NAVSWSTLVV--------GLAVNGFGKEALELFKEMEIGGFV 342 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g~~ 342 (616)
+.|-.+|--.++.-...|+.+...++|++.... .-..|..-|- .=....+.+.+.++|+...+. ++
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 456667777777777788888888888876531 1112322221 112356788888888888772 33
Q ss_pred CCHHHHHHHHHHHh----cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHH
Q 007134 343 PGEVTFVGVLYACS----HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIW 416 (616)
Q Consensus 343 p~~~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~ 416 (616)
-..+||.-+--.++ ++.++..|.+++.... |.-|...++...|..=.+.+.++....++++. ...| |-.+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHH
Confidence 34577765544443 5778888888888876 77788888888888888888899988888776 4667 66888
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC--chhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSG--DYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
......-...|+.+.|..+|+.++....-+.. .+-..++.-...|.++.|..+++.+.++.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 88888888889999999999888753221111 11233333357888999999998887754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-07 Score=94.60 Aligned_cols=397 Identities=12% Similarity=0.004 Sum_probs=255.0
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 007134 60 KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHV 136 (616)
Q Consensus 60 ~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 136 (616)
+.|....++.- |.++.+|.+.+. .. +.++|+.++.+..+ .+...|.+ |++..-++.|..+++...+
T Consensus 366 ~RVlRKALe~i--P~sv~LWKaAVe----lE-~~~darilL~rAveccp~s~dLwlA----larLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKAAVE----LE-EPEDARILLERAVECCPQSMDLWLA----LARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHHHHh----cc-ChHHHHHHHHHHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 44555555433 566666666553 33 56667777765443 24444543 3444556777777777765
Q ss_pred CCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHH----HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC------
Q 007134 137 SGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAI----RNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE------ 206 (616)
Q Consensus 137 ~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------ 206 (616)
. ++-+...|.+....=-..|+.+....+.+..+ ..|+..+..-|-.=...+-+.|.+-.+..+......
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 4 55666677666666666677777776665543 456666666666666667777777766666665532
Q ss_pred CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007134 207 RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286 (616)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (616)
.--.+|+.-...|.+.+.++-|..+|...++- .+-+...|......=-..|..+.-..++.+++... +-....+-...
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~a 591 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYA 591 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHH
Confidence 12346777777777777777777777776653 23344455555555555677777777777777653 33444555556
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 287 DFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
.-+-..|++..|+.++...-+. +...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---.++.++
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 6666677777777777766432 4456777777777777788888887777663 3455444444444445677778
Q ss_pred HHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 364 GFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
|.+++++..+.| |+ ...|-.+...+.+.++++.|.+.|..- ..-|+ ...|..|...--+.|.+..|..++++..
T Consensus 670 A~rllEe~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 670 ALRLLEEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 887777776633 44 556777777777777777777777544 33453 4577777666677777777888887777
Q ss_pred hcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 441 QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 441 ~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
-.+|++...|...+.+-.+.|+.+.|..+..+..+
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777766655543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.4e-08 Score=94.12 Aligned_cols=381 Identities=12% Similarity=0.072 Sum_probs=288.0
Q ss_pred hCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHH
Q 007134 88 SLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 164 (616)
..+ ++..|+.+|+... .++...|-.-+..=.++.+...|..++++....-+..|..-|. -+-.=-..|++..|++
T Consensus 85 sq~-e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQK-EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHHHHHhcccHHHHH
Confidence 455 7889999999765 4788889999999999999999999999998743333433222 2223345689999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC
Q 007134 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS--ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEP 242 (616)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 242 (616)
+|+.-.+ ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|--...-=.++|+...|..+|....+. -.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 9998877 58999999999999999999999999999864 699999998888888999999999999887653 12
Q ss_pred CHHHHHHHHHHH----HhcCchHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HHhcCCC
Q 007134 243 DGYTMVSLFSAC----AELGALALGRRAHTYVWKVGLSDN--VNVNNALLDFYSKCGIIIAAQRV--------FREMRKR 308 (616)
Q Consensus 243 ~~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~--------f~~m~~~ 308 (616)
|...-..+..++ .....++.|.-+|...++.- +.+ ...|..++..=-+-|+....... |+.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 232223333333 45567888999999888763 333 45566666555556664443332 2333333
Q ss_pred ---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH-------HHHHHHHHH---hcCCChHHHHHHHHHhHHhh
Q 007134 309 ---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV-------TFVGVLYAC---SHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 309 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~ 375 (616)
|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|..+=-+| ....+++.+.++|+...+
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-- 394 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-- 394 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--
Confidence 5667777777777889999999999999875 555321 122211122 247899999999999886
Q ss_pred CCCCChhhHHHHHHH----HHhcCCHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 376 GIMPKIEHFGCMVDL----LGRAGLVKQAYEYIQN-MLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 376 ~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~-m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
-++-...++.-+=-+ ..++.++..|.+++.. +|.-|-..+|...|..-.+.++++....++++.++..|.+..++
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W 474 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAW 474 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHH
Confidence 455556666554444 4578999999999955 47889999999999999999999999999999999999998888
Q ss_pred hhhhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 451 VLLSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 451 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
.-.+.+-...|+++.|..+|........
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 8888888899999999999998877654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-12 Score=88.04 Aligned_cols=50 Identities=38% Similarity=0.736 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK 155 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 155 (616)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-07 Score=94.61 Aligned_cols=250 Identities=13% Similarity=0.085 Sum_probs=149.5
Q ss_pred CCccHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcC
Q 007134 223 GKPNEALTLFREMASEGVEPD------GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN---VNVNNALLDFYSKCG 293 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g 293 (616)
|+..+-...|.+..+. +.|- ...|..+.+.|-..|+++.|+.+|++..+..++.- ..+|..-.++=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4455555666665543 3332 23456667777788888888888888777654322 345555556666666
Q ss_pred CHHHHHHHHHhcCC---C------------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC------------
Q 007134 294 IIIAAQRVFREMRK---R------------------NAVSWSTLVVGLAVNGFGKEALELFKEMEIGG------------ 340 (616)
Q Consensus 294 ~~~~A~~~f~~m~~---~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ 340 (616)
+++.|+++.+.... + ....|...+..--..|-++....+++++.+..
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm 519 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM 519 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 77777777665431 1 12233333332223333333333333333321
Q ss_pred ----------------------CcCCH-HHHHHHHHHHh---cCCChHHHHHHHHHhHHhhCCCCCh--hhHHHHHHHHH
Q 007134 341 ----------------------FVPGE-VTFVGVLYACS---HCGMVDEGFSYFKRMKDEYGIMPKI--EHFGCMVDLLG 392 (616)
Q Consensus 341 ----------------------~~p~~-~t~~~ll~a~~---~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~ 392 (616)
-.|+. ..|+..|.-+. ....++.|..+|++..+ +.+|.. ..|-.....=.
T Consensus 520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEE 597 (835)
T KOG2047|consen 520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEE 597 (835)
T ss_pred HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHH
Confidence 12333 22333333222 24568999999999988 777662 22333334445
Q ss_pred hcCCHHHHHHHHHhCC--CCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc--hhhhhHHhHhcccchHH
Q 007134 393 RAGLVKQAYEYIQNML--MPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD--YVLLSNLYAYEQRWLNV 466 (616)
Q Consensus 393 ~~g~~~~A~~~~~~m~--~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~y~~~g~~~~a 466 (616)
+.|....|+.++++.. +++. ...|+..|.--...=-+..-..+++++++.-|++..- ..-.+++-.+.|.++.|
T Consensus 598 e~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRA 677 (835)
T KOG2047|consen 598 EHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRA 677 (835)
T ss_pred HhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHH
Confidence 6788999999999884 5553 2588888875554444667788999998887774222 23456677889999999
Q ss_pred HHHHHHHhh
Q 007134 467 QEVRRTMVK 475 (616)
Q Consensus 467 ~~~~~~m~~ 475 (616)
+.++..-.+
T Consensus 678 RaIya~~sq 686 (835)
T KOG2047|consen 678 RAIYAHGSQ 686 (835)
T ss_pred HHHHHhhhh
Confidence 999976544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-08 Score=99.74 Aligned_cols=393 Identities=12% Similarity=0.024 Sum_probs=272.0
Q ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHh--hCCCCChhHHHHHHHHHHhcCCchHHHHHHH----HHHHC---------C
Q 007134 74 NNPDLGKYLIYAIVSLSFPMSYAHNIFS--HVQDPNIFTWNTMIRGYAESANPLLAVELYS----KMHVS---------G 138 (616)
Q Consensus 74 ~~~~~~~~li~~y~~~~~~~~~A~~~f~--~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~----~m~~~---------g 138 (616)
.+|.-.--+.++|.-.+ .++.|..+.. .+...|..+.......+.+..++++|+.++. .+... -
T Consensus 47 ~dp~d~~~~aq~l~~~~-~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGR-QYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhh-HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 34544456777887776 8888888775 5667899999999999999999999999987 32110 0
Q ss_pred CCCCcch----HHHHH-------HHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH-----------------h
Q 007134 139 IKPDTHT----YPFLL-------KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA-----------------A 190 (616)
Q Consensus 139 ~~pd~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~-----------------~ 190 (616)
+.+|..- -+.-. +.+....+.++|+..+.+++....... ..+-.|+.... -
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~-Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~ 204 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF-EAFEKLVSAHMLTAQEEFELLESLDLAML 204 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH-HHHHHHHHHHhcchhHHHHHHhcccHHhh
Confidence 1122111 00111 234445567778877777765432211 11111111110 0
Q ss_pred c-CCHHHHHHHHhhc----CC----------------CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHH
Q 007134 191 F-GHVKDACKVFELM----SE----------------RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVS 249 (616)
Q Consensus 191 ~-g~~~~A~~~f~~~----~~----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 249 (616)
+ .+.+.-+.+|+-. .+ .++...-.-..-+...+++++.+++++...+.. ++....+..
T Consensus 205 ~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~ 283 (611)
T KOG1173|consen 205 TKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPL 283 (611)
T ss_pred hhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHH
Confidence 0 1112222233211 00 123333344455677899999999999987763 555555555
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCH
Q 007134 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN---AVSWSTLVVGLAVNGFG 326 (616)
Q Consensus 250 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~ 326 (616)
-|..+...|+..+-..+-..+++. .|....+|-++.--|.-.|+.++|++.|.+...-| ...|-.....|+-.|..
T Consensus 284 ~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 284 HIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence 666778888777666666666665 46678889999988999999999999998866443 46899999999999999
Q ss_pred HHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 007134 327 KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVKQAYEYIQ 405 (616)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (616)
++|+..+...-+. ++-...-+.-+.--|.+.++.+.|.++|.+.. ++.| |....+-+.-.....+.+.+|..+|+
T Consensus 363 dQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 363 DQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred HHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 9999998876552 11111122334445788999999999999886 5545 46677777777778899999999997
Q ss_pred hCC--------CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 406 NML--------MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 406 ~m~--------~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
... -++ -..+++.|..+|++.+.+++|+..+++++.+.|.++++|..++-+|...|+++.|.+.|.+..
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 652 112 345788999999999999999999999999999999999999999999999999999998764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-08 Score=96.75 Aligned_cols=294 Identities=14% Similarity=0.077 Sum_probs=195.1
Q ss_pred HHHHHHHHh--cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 007134 112 NTMIRGYAE--SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189 (616)
Q Consensus 112 ~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 189 (616)
..+..+..+ .|++.+|.++..+-.+.+-.|- ..|.....+.-..||.+.+-+++.++.+..-.++..+.-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 345555544 6999999999988776653332 3455666777888999999999999988754677778888888899
Q ss_pred hcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 007134 190 AFGHVKDACKVFELMS---ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266 (616)
Q Consensus 190 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (616)
..|+++.|..-.++.. .++.........+|.+.|++.+...++.+|.+.|+--|...- ++
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l 227 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL 227 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH
Confidence 9999999988777654 367788888999999999999999999999988865443211 00
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC
Q 007134 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343 (616)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (616)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|
T Consensus 228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred -----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 112333333333333333333344444442 245555666677777777778877777777766666
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHH
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGA 422 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a 422 (616)
+.. .+-.+.+.++...-.+..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+-+..+
T Consensus 297 ~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~ 370 (400)
T COG3071 297 RLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADA 370 (400)
T ss_pred hHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 522 22245566666666666666655444444 45556666666777777776666644 456666667666667
Q ss_pred HHHcCCcHHHHHHHHHHH
Q 007134 423 CTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~ 440 (616)
+.+.|+.++|.+..++.+
T Consensus 371 ~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 371 LDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHcCChHHHHHHHHHHH
Confidence 777777776666666654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-11 Score=84.84 Aligned_cols=50 Identities=32% Similarity=0.482 Sum_probs=46.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc
Q 007134 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357 (616)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 357 (616)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-09 Score=103.11 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=152.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 354 (616)
....+..+...|.+.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345666677778888888888888877643 245677778888888888888888888887653 2344566667777
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a 432 (616)
+...|++++|...|+...+..........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88888999999888888763222233556777888889999999999999776 2344 456788888889999999999
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...++++++..|.++..+..++.++...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999888787777777888889999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-09 Score=108.18 Aligned_cols=231 Identities=18% Similarity=0.119 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKV-----GL-SDNV-NVNNALLDFYSKCGIIIAAQRVFREMRK-------R- 308 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~- 308 (616)
..|+..+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666788888888888888888877654 21 2222 2234467788889999998888887652 1
Q ss_pred ---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCc-CCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhC--
Q 007134 309 ---NAVSWSTLVVGLAVNGFGKEALELFKEMEI-----GGFV-PGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYG-- 376 (616)
Q Consensus 309 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 376 (616)
-..+++.|...|.+.|++++|...+++..+ .|.. |.. .-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 245678888889999998888887776543 1222 222 3356667788899999999999988776544
Q ss_pred CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh-
Q 007134 377 IMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNML---------MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQ- 441 (616)
Q Consensus 377 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~- 441 (616)
..++ ..+++.|...|...|++++|.+++++.- ..+. ...++.|..+|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4578999999999999999999998761 2232 46778889999999999999999988743
Q ss_pred ---cCCCCC---CchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 442 ---LEPKHS---GDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 442 ---~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
.+|+++ .+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 455544 347789999999999999999988765
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-08 Score=97.83 Aligned_cols=274 Identities=15% Similarity=0.092 Sum_probs=198.0
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHH
Q 007134 191 FGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAH 267 (616)
Q Consensus 191 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 267 (616)
.|++..|++...+-.+ ..+..|..-+.+--+.|+.+.+-.++.+.-+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5788888887776443 2344555555667777888888888887766433444455555566667778888888877
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-----------AVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
..+.+.+ +.+..+......+|.+.|++.....+...+.+.. ..+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777765 5567777888888888888888888888887642 246777777666666666555566665
Q ss_pred HhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh----CCCCCc
Q 007134 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN----MLMPPN 412 (616)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~pd 412 (616)
-.. .+-+...-.+++.-+.++|+.++|.++..+..+. +..|+.. .+ -...+-++...-++..++ .+. +
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 432 3444555667777888999999999999888775 6666622 11 223455555554444433 343 4
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 413 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+..+.+|..-|.+++.+.+|...++.+++..|. ...|..++.++.+.|+.++|.+.++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 478999999999999999999999999999987 7789999999999999999999998765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-08 Score=91.19 Aligned_cols=216 Identities=13% Similarity=0.099 Sum_probs=132.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CCh------hHHHHHHHHHHhCCCccHH
Q 007134 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDL------VAWNSVINGFASNGKPNEA 228 (616)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A 228 (616)
.++.++|...|-+|.+.. +.+..+.-+|.+.|-+.|.+|.|+++-..+.+ ||. .+.-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 367788888888888743 44556777888899999999999998887765 332 2344566778888889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 229 LTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN----VNVNNALLDFYSKCGIIIAAQRVFRE 304 (616)
Q Consensus 229 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (616)
.++|..+.+.+ ..-......++..|-...++++|..+-.++.+.+-.+. ...|.-|...+.-..+++.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99998887754 22334566677777777888888887777777653332 12233334444444555555555555
Q ss_pred cCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 305 MRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 305 m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
..+. .+..--.+...+...|+++.|++.++...+.+..--..+...|..+|.+.|+.+++...+..+.+
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4432 22222233444555555555555555555543222223344455555555555555555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-08 Score=110.05 Aligned_cols=260 Identities=12% Similarity=0.045 Sum_probs=186.5
Q ss_pred ChhHHHHHHHHHHh-----CCCccHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---------cCchHHHHHHHHHHHH
Q 007134 208 DLVAWNSVINGFAS-----NGKPNEALTLFREMASEGVEPDG-YTMVSLFSACAE---------LGALALGRRAHTYVWK 272 (616)
Q Consensus 208 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~---------~~~~~~a~~~~~~~~~ 272 (616)
+..+|...+.+-.. .+..++|+.+|++..+. .|+. ..+..+..++.. .+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666665322 13357899999999875 4543 345444444332 2347899999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH-HH
Q 007134 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--R-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV-TF 348 (616)
Q Consensus 273 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 348 (616)
.. +.+...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 55778888888999999999999999998764 3 4567888999999999999999999999885 44432 23
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcH-HHHHHHHHHHHH
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNA-VIWRTLLGACTI 425 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~-~~~~~ll~a~~~ 425 (616)
..++..+...|++++|...++++.+. .+|+ ...+..+...|...|+.++|...++++. ..|+. ..++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999998753 2343 5557778888999999999999998873 45544 455556566677
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.| +.|...++++++..-..+..+..+..+|.-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4788878777654333333444477788888888888777 7776543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-07 Score=87.46 Aligned_cols=362 Identities=11% Similarity=-0.016 Sum_probs=241.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhhCCCCChhHH-HHHHHHHHhcC-CchHH--------------HHHHHHHHHCC-----
Q 007134 80 KYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTW-NTMIRGYAESA-NPLLA--------------VELYSKMHVSG----- 138 (616)
Q Consensus 80 ~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~-~~li~~~~~~g-~~~~A--------------~~l~~~m~~~g----- 138 (616)
-..+..|...+ +-++|.......|..-...- |.|+.-+-+.| +..++ +..+.-..+.+
T Consensus 101 r~~aecy~~~~-n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e 179 (564)
T KOG1174|consen 101 RRAAECYRQIG-NTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNE 179 (564)
T ss_pred HHHHHHHHHHc-cchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchh
Confidence 34566666666 78888888888876433333 33443333333 21122 12222222222
Q ss_pred ----------CCCCcchHHHHHHHHHc--CCCcHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 139 ----------IKPDTHTYPFLLKAISK--LADVRMGEQTHSVAIRN-GFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 139 ----------~~pd~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
+.|+..+...-+.+++. .++-..+.+.+-.+.+. -++.|+....++.+.|...|+.++|...|++..
T Consensus 180 ~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 180 INSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred hhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh
Confidence 23444444444555443 34444455555444433 367788899999999999999999999999876
Q ss_pred CCChhHHHHH---HHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHH
Q 007134 206 ERDLVAWNSV---INGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN 282 (616)
Q Consensus 206 ~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 282 (616)
.-|..+...| .--+.+.|+++....+...+.... +-....|..-+.......+++.|..+-++.++.. +.++..+
T Consensus 260 ~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~al 337 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEAL 337 (564)
T ss_pred hCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHH
Confidence 5444333332 233457888888888777775432 1222333333344456677888888877777654 3344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC--C-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHH-HHHh-c
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMR--K-RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL-YACS-H 357 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~ 357 (616)
-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|++.+|..+-+..... +..+..+...+. ..|. .
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccC
Confidence 555567778899999999998765 3 37889999999999999999999887776543 233444444332 2222 2
Q ss_pred CCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCcHHHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHSAIAEIA 435 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~ 435 (616)
...-++|..+++.-. .+.|+ ....+.+...+...|+.++++.++++. ...||....+.|...++..+.+++|...
T Consensus 417 p~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred chhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHH
Confidence 344578888888765 55677 666778888999999999999999876 4778999999999999999999999999
Q ss_pred HHHHHhcCCCCCC
Q 007134 436 RSTLLQLEPKHSG 448 (616)
Q Consensus 436 ~~~~~~~~p~~~~ 448 (616)
|..++.++|++..
T Consensus 494 y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 494 YYKALRQDPKSKR 506 (564)
T ss_pred HHHHHhcCccchH
Confidence 9999999998543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=113.88 Aligned_cols=266 Identities=12% Similarity=0.077 Sum_probs=187.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 007134 230 TLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN 309 (616)
Q Consensus 230 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 309 (616)
.++-.+...|+.|+.+||.++|.-|+..|+.+.|- +|..|.-...+.+..+++.++......|+.+.+. .+-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45678889999999999999999999999999999 9999988888889999999999999999887766 677
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
..+|+.|..+|..+|+... ++..++ -...+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999765 333333 122233344555555555555544322223445543 4556
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC-cHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHH
Q 007134 390 LLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH-SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 468 (616)
.+.-.|.++.++++...+|...-......++.-+..... +++-....+...+ .|+ +.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhHHH
Confidence 677788899999999988733211111113555544443 3333333333333 454 7788888888889999999999
Q ss_pred HHHHHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccccc
Q 007134 469 VRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFAD 535 (616)
Q Consensus 469 ~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p~~~~~~~~ 535 (616)
+...|+++|+.-.+.+.|..+-+ ... ...++...+-|.+.|+.|+.++...-
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~~-------~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------INA-------AQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Ccc-------chHHHHHHHHHHHhcCCCCcchhHHH
Confidence 99999999998888777765433 111 12334445678899999999876443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-08 Score=95.77 Aligned_cols=192 Identities=15% Similarity=0.037 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 007134 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187 (616)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 187 (616)
...+..+...|...|++++|++.|++..+.. +.+...+..+...+...|+++.|.+.++..++.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666655432 1123344445555555666666666666655543 3334455555666
Q ss_pred HHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH
Q 007134 188 YAAFGHVKDACKVFELMSE-----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (616)
|...|++++|.+.|++... .....+..+...+...|++++|...|.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665532 122344445555566666666666666555432 1223344444455555555555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007134 263 GRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303 (616)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (616)
|...++...+. .+.+...+..+...+...|+.++|..+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555554443 12233333344444444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.6e-09 Score=107.76 Aligned_cols=235 Identities=15% Similarity=0.177 Sum_probs=121.0
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHH
Q 007134 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSL 184 (616)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 184 (616)
.||.+||..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.++ .|...+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 356677777777777777776666 6666666656666666766666666666665554 4556677777
Q ss_pred HHHHHhcCCHHH---HHHHHhhcCC-------CChhHH---------------HHHHHHHHhCCCccHHHHHHHHHHHCC
Q 007134 185 VHMYAAFGHVKD---ACKVFELMSE-------RDLVAW---------------NSVINGFASNGKPNEALTLFREMASEG 239 (616)
Q Consensus 185 i~~y~~~g~~~~---A~~~f~~~~~-------~~~~~~---------------~~li~~~~~~g~~~~A~~~~~~m~~~g 239 (616)
..+|...||+.. .++.++.+.. ....-| ...|.-....|.++.+++++..+....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 777777776544 2221111110 000001 111222233334444444443332111
Q ss_pred -CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----ChhhHH
Q 007134 240 -VEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR----NAVSWS 314 (616)
Q Consensus 240 -~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~----~~~~~~ 314 (616)
..| +..+++-+.. ...-.+++........-.++..++.++++.-...|+++.|..++.+|.++ +..-|-
T Consensus 170 ~~~p----~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 170 WNAP----FQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred ccch----HHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 011 1112322222 12223333333322211466667777777777777777777777777654 222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
.|+-+ .+....+..+.+-|++.|+.|+..|+...+..|...|.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 33332 56666666666667777777777776666666655443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.2e-08 Score=105.25 Aligned_cols=239 Identities=12% Similarity=-0.022 Sum_probs=116.5
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH---------hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCcc
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYA---------AFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPN 226 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~---------~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 226 (616)
+++|.+.++++++.. +.+...+..+..+|. ..+++++|...+++..+ .+..+|..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 345555555555442 222333443433332 12335566666655543 23445555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
+|+..|++..+.+ +.+...+..+..++...|++++|...++.+.+.... +...+..++..+...|++++|...+++..
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6666666665543 223344555555566666666666666666554311 22222223333444566666666666553
Q ss_pred C---C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHH-HHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh
Q 007134 307 K---R-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV-GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI 381 (616)
Q Consensus 307 ~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 381 (616)
. + +...+..+...+...|+.++|...+.++... .|+..+.. .+...+...| +.|...++.+.+.....+.-
T Consensus 434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 1 2 2334555556666666666666666665442 33333322 2223344444 35555555555433333333
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
..+..+ .|.-.|+-+.+..+ +++
T Consensus 510 ~~~~~~--~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 510 PGLLPL--VLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred chHHHH--HHHHHhhhHHHHHH-HHh
Confidence 333233 23344554444444 444
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-07 Score=90.87 Aligned_cols=218 Identities=13% Similarity=0.037 Sum_probs=170.1
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
+.-.|+...|...|+..+.....++.. |.-+..+|.+..+.++..+.|..+.+.+ +.+..+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 345688999999999998875444432 7777888999999999999999999876 55677777778888888999999
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 299 QRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 299 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
..=|++...- ++..|--+..+.-+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+...+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 9999988754 4556666666667788999999999999875 344456788888889999999999999998874
Q ss_pred CCCCC-------hh--hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 007134 376 GIMPK-------IE--HFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443 (616)
Q Consensus 376 ~~~p~-------~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 443 (616)
+.|+ .. +--+++. +.-.+++..|.+++++. .+.| ....+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2333 11 1112221 22348999999999877 4667 45789999999999999999999999986553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-07 Score=94.10 Aligned_cols=395 Identities=15% Similarity=0.046 Sum_probs=259.3
Q ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch-HHHH
Q 007134 74 NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFL 149 (616)
Q Consensus 74 ~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~l 149 (616)
.++.+|-.|.-+...+| +++.+-+.|+.... .....|+.+...|...|....|+.+++.-......|+..+ +-..
T Consensus 321 nd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 68899999999999999 99999999997542 3556899999999999999999999987765433354444 3333
Q ss_pred HHHHH-cCCCcHHHHHHHHHHHHh--CC--CCcHHHHHHHHHHHHhcC-----------CHHHHHHHHhhcCCC---Chh
Q 007134 150 LKAIS-KLADVRMGEQTHSVAIRN--GF--ESLVFVQNSLVHMYAAFG-----------HVKDACKVFELMSER---DLV 210 (616)
Q Consensus 150 l~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~~~g-----------~~~~A~~~f~~~~~~---~~~ 210 (616)
-+.|. +.+..+++..+-.+++.. +. ......|-.+.-+|...- .-.++.+.+++..+. |..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 44454 446777777777777662 21 222345555555554331 234566677766432 222
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH-hCCCCchhHHHHHHHHH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNVNNALLDFY 289 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y 289 (616)
+.--+.--|+-.++.+.|++..++..+-+-.-+...|..+.-.++..+++..|..+.+.... .|.... ....-+..-
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--LMDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh--hchhhhhhh
Confidence 22223344667788999999999998886677888888888888888999999998877654 232111 001111111
Q ss_pred HhcCCHHHHHHHHHhc--------------------------C-----CCChh-hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 290 SKCGIIIAAQRVFREM--------------------------R-----KRNAV-SWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m--------------------------~-----~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
...|+.++|......+ . ..+.. ++..+ .+.+. -+.+.+..-.. |.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-Lp 634 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-LP 634 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-cC
Confidence 1233444433322211 1 01111 22211 11111 11111100000 22
Q ss_pred hCCCc--CCH------HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 007134 338 IGGFV--PGE------VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-L 408 (616)
Q Consensus 338 ~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 408 (616)
..-+. |+. ..+......+.+.+..++|...+.+..+ ..+-....|.-....+...|.+++|.+.|... -
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 11122 232 2234455667788999999888877764 23334667777778889999999999988766 5
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcHHHHH--HHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 409 MPPN-AVIWRTLLGACTIHGHSAIAEI--ARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 409 ~~pd-~~~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+.|| +.+..++...+.+.|+...|.. +...+++++|.++.+|..++.++.+.|+.++|.+-|+...+.
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7885 5788999999999999888888 999999999999999999999999999999999999888664
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.3e-09 Score=97.72 Aligned_cols=229 Identities=15% Similarity=0.105 Sum_probs=181.2
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007134 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292 (616)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 292 (616)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-..||..+-.+|.+..+++.|..++.+-++. ++.++....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67889999999999999999988876 566678888899999999999999999888775 466777777788888899
Q ss_pred CCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHH
Q 007134 293 GIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369 (616)
Q Consensus 293 g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 369 (616)
++.++|.++|+...+. |+.+..++..+|.-.++++-|+..|+++...|+. +...|+.+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999988653 6677777788889999999999999999998865 55677788878888888888887777
Q ss_pred HhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 370 RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 370 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
+.... .-.|+ +| ..+|..|.......||+..|.+.|+.++..+|++..+
T Consensus 383 RAlst-at~~~------------------~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPG------------------QA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcc------------------hh------------hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 76542 11122 11 2355555555566778888888888888888888888
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++.|+-+-.+.|++++|..+++.....
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888888888888888888888777553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-07 Score=93.69 Aligned_cols=278 Identities=14% Similarity=0.059 Sum_probs=211.6
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 007134 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSER---DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250 (616)
Q Consensus 174 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (616)
...+..+.....+-+...+++.+..++++...+. ....+..-|..+...|+..+-..+=.+|.+. .+-...+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3456666777778888899999999999988764 4456667788999999999888888888875 34566799999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHH
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGK 327 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 327 (616)
.--|-..|..++|++.+.+..... +.-...|-+....|+-.|..+.|...+....+ ..-..+--+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 888888999999999999876643 22345677788889999999998887765432 11112222445577889999
Q ss_pred HHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhh-CCC----CChhhHHHHHHHHHhcCCHHHHH
Q 007134 328 EALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-GIM----PKIEHFGCMVDLLGRAGLVKQAY 401 (616)
Q Consensus 328 ~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~ 401 (616)
.|.+.|.+... +-|+ ....+-+.-...+.+.+.+|..+|+.....- .+. ....+++.|..+|.+.+.+++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999998876 4554 4555555555566889999999999886310 111 13446788899999999999999
Q ss_pred HHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 402 EYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 402 ~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
..+++.- ..| |..++.++.-.+...|+++.|.+.|.+++.+.|++..+-..|..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 9998873 445 88899999999999999999999999999999997655444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.3e-08 Score=100.06 Aligned_cols=232 Identities=16% Similarity=0.116 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------Chh-HHHHHHHHHHhCCCccHHHHHHHHHHHCC---CCCC
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSER----------DLV-AWNSVINGFASNGKPNEALTLFREMASEG---VEPD 243 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 243 (616)
..+...|..+|...|+++.|+.+|....+. .+. .-+.+...|...+++++|..+|+++...- .-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445566888888888888888888765321 111 12234445555666666666665553210 0011
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CChh-h
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK----------RNAV-S 312 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------~~~~-~ 312 (616)
.+.-..+++.|..+|.+.|++++|...+++..+ +.+. .
T Consensus 279 -------------------------------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 279 -------------------------------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred -------------------------------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 111123344444555555655555555444321 1222 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcCCH----HHHHHHHHHHhcCCChHHHHHHHHHhHHhh----C-CCCC
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIG---GFVPGE----VTFVGVLYACSHCGMVDEGFSYFKRMKDEY----G-IMPK 380 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~ 380 (616)
.+.++..+...+++++|..++++..+. -+.++. .+++.+...+.+.|++++|.++|+++.... + ..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 455566677777788877777765431 122222 567778888888888888888888876542 1 1122
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 381 -IEHFGCMVDLLGRAGLVKQAYEYIQNM--------LMPPNA-VIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 381 -~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
..+++.|...|.+.++..+|.++|.+. +..|+. .+|..|...|...|+++.|.++.+++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 456677888888888888888888654 244554 689999999999999999999999885
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.5e-08 Score=95.68 Aligned_cols=210 Identities=14% Similarity=0.050 Sum_probs=134.0
Q ss_pred chHHHHHHHHHHHHhC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 007134 259 ALALGRRAHTYVWKVG-LSD--NVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALEL 332 (616)
Q Consensus 259 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 332 (616)
..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 222 235566777778888888888888877653 3567788888888888888888888
Q ss_pred HHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--C
Q 007134 333 FKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--M 409 (616)
Q Consensus 333 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~ 409 (616)
|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.|++.. .
T Consensus 121 ~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 8888763 454 456667777777888888888888887653 3442212222223445677888888885542 2
Q ss_pred CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHH-------hcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLL-------QLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 410 ~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.|+...| .......|+...+ ..++.+. ++.|+.+..|..++.+|.+.|++++|...+++..+.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 2223345555443 2333332 4455556678888888888888888888888876543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-07 Score=91.32 Aligned_cols=215 Identities=13% Similarity=0.027 Sum_probs=138.5
Q ss_pred CCccHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007134 223 GKPNEALTLFREMASEG-VEPD--GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 299 (616)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555666666665432 1222 2345555556667777777777777776654 445677888888888888888888
Q ss_pred HHHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhC
Q 007134 300 RVFREMRK--R-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG 376 (616)
Q Consensus 300 ~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 376 (616)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88887753 2 4567788888888889999999999888774 45433222222234456788999998876554 3
Q ss_pred CCCChhhHHHHHHHHHhcCCHH--HHHHHHHhC-C----CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 377 IMPKIEHFGCMVDLLGRAGLVK--QAYEYIQNM-L----MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 377 ~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m-~----~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
..|+...+ .++.. ..|+.. ++.+.+.+- . ..| ....|..+...+...|++++|+..|+++++.+|.
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 33433222 23333 344443 333333221 1 122 2358899999999999999999999999999974
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-07 Score=88.91 Aligned_cols=226 Identities=13% Similarity=0.057 Sum_probs=181.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM-VSLFSA 253 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a 253 (616)
|-+--+.+...|.+.|.+.+|++-|+...+ +-+.||-.|-..|.+..+++.|+.+|.+-++. .|-.+|| ..+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 444567899999999999999999987654 67789999999999999999999999988764 5666666 456677
Q ss_pred HHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 007134 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
+...++.+++.+++....+.. +.++....++...|.-.++.+-|+..|+++.+ .+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 888999999999999998874 55677777777888889999999999998764 57888999999999999999999
Q ss_pred HHHHHHHhCCCcCCH--HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 331 ELFKEMEIGGFVPGE--VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.-|++....--.|+. ..|-.+.......|+...|.+.|+-... .-......++.|.-.-.+.|++++|..+++..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999998765444544 3455566666678888888888887765 23334667777777777888888887777665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-06 Score=84.47 Aligned_cols=369 Identities=13% Similarity=0.084 Sum_probs=229.3
Q ss_pred hCCCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-chHHHHHHHHHcCCCcHHHH
Q 007134 88 SLSFPMSYAHNIFSHV---QDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT-HTYPFLLKAISKLADVRMGE 163 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~ 163 (616)
..| +++.|...|... ..+|-+.|+.-..+|+..|++++|++=-.+-.+ +.|+- ..|+....++...|++++|.
T Consensus 14 s~~-d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 14 SSG-DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred ccc-cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHH
Confidence 445 788888888642 345777888888888888888888766555554 45664 36777788888888888888
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh------cCC-C------ChhHHHHHHHHHHhC--------
Q 007134 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL------MSE-R------DLVAWNSVINGFASN-------- 222 (616)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~------~~~-~------~~~~~~~li~~~~~~-------- 222 (616)
.-|..-++.. +.+...++-|.+++... . .+.+.|.. ... | ....|..++..+-++
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 8888777763 55666777777776111 0 11111111 000 0 111233333322221
Q ss_pred --CCccHHHHHHHH-----HHHC-------CCCC------------C----------HHHHHHHHHHHHhcCchHHHHHH
Q 007134 223 --GKPNEALTLFRE-----MASE-------GVEP------------D----------GYTMVSLFSACAELGALALGRRA 266 (616)
Q Consensus 223 --g~~~~A~~~~~~-----m~~~-------g~~p------------~----------~~t~~~ll~a~~~~~~~~~a~~~ 266 (616)
.+...|+-.+.. +... +..| | ..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 001111111100 0000 1111 0 11234456666666777778777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh----------hHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV----------SWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~----------~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
+...+... .++..++....+|...|.+......-+...+..-. +...+..+|.+.++++.|+..|++.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77777664 56666677777888887777666555544332111 1222344666677888888888886
Q ss_pred HhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cH
Q 007134 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIE-HFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NA 413 (616)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~ 413 (616)
...-..||..+ +....+++....+... -+.|... --..-...+.+.|++.+|+..+.++. ..| |.
T Consensus 325 Lte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 325 LTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 66544554321 2233344444333332 2334421 11122566789999999999998873 556 67
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
..|.....+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|+.|.+.+++..+.+
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999999988889988888989999999999999877643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-05 Score=79.31 Aligned_cols=176 Identities=11% Similarity=0.137 Sum_probs=125.6
Q ss_pred ChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007134 75 NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD-----PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149 (616)
Q Consensus 75 ~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 149 (616)
-|.+|-..+....+.| ++..-+++|+.... .....|...+......|-++.++.+|++-++- .|. .-.--
T Consensus 101 mpRIwl~Ylq~l~~Q~-~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eey 175 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQG-LITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEY 175 (835)
T ss_pred CCHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHH
Confidence 3566766777777887 88899999985332 23456888888888899999999999998763 333 35566
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHh------CCCCcHHHHHHHHHHHHhcCCHH---HHHHHHhhcCCC--C--hhHHHHHH
Q 007134 150 LKAISKLADVRMGEQTHSVAIRN------GFESLVFVQNSLVHMYAAFGHVK---DACKVFELMSER--D--LVAWNSVI 216 (616)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li 216 (616)
+..++..+++++|.+.+...+.. ..+.+...|.-+-+..++.-+.- ....+++.+..+ | ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 77788899999999888877532 12556667777777777664432 344556665542 3 34699999
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007134 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (616)
.-|.+.|.+++|-++|++..+. ..+..-|+.+.++|++-
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHH
Confidence 9999999999999999987765 23445566666666543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-07 Score=83.35 Aligned_cols=161 Identities=14% Similarity=0.072 Sum_probs=136.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHH
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDL 390 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 390 (616)
...|.-+|.+.|+...|.+-+++..+. .|+ ..++..+...|.+.|..+.|.+.|+...+ +.|+ ..+.|...--
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445677889999999999999998885 344 46788888889999999999999998874 3444 7788888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHH
Q 007134 391 LGRAGLVKQAYEYIQNMLMPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 466 (616)
++..|++++|...|++....|+ ..+|..+.-+..+.|+.+.|...+++.++++|+.+.....+.....+.|++..|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999988743342 468888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 007134 467 QEVRRTMVKERV 478 (616)
Q Consensus 467 ~~~~~~m~~~~~ 478 (616)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998876553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.3e-08 Score=96.82 Aligned_cols=219 Identities=13% Similarity=0.024 Sum_probs=172.8
Q ss_pred HHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 007134 254 CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
+.+.|++.+|.-.|+..++.. +.+...|--|.......++-..|+..+++..+ .|....-+|...|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356778888888888888775 56788888888888888888888888877654 36667777888888889889999
Q ss_pred HHHHHHHhCCCc-----C---CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 007134 331 ELFKEMEIGGFV-----P---GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402 (616)
Q Consensus 331 ~l~~~m~~~g~~-----p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (616)
+.++.-+....+ + +...-.. ..+.....+....++|-.+....+..+|..++.+|.-.|.-.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887653210 0 0000000 12223334556677777777766766888889999999999999999999
Q ss_pred HHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 403 YIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 403 ~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.|+.. .++| |..+||.|...++...+.++|+.+|++++++.|........|+-.|...|.++||.+.+-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99887 5888 6789999999999999999999999999999999999999999999999999999998866543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00023 Score=72.69 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=113.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhc
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKRN-AVSWSTLVVGLAV--NGFGKEALELFKEMEIGGFVPGE--VTFVGVLYACSH 357 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~ 357 (616)
++++.+|. +..+.+.++-...+... ...+..++....+ ...+.+|.+++...-+. .|+. ......+.....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 44444443 34455555555554332 2334444433222 22467777777776653 3443 333444555677
Q ss_pred CCChHHHHHHHH--------HhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCcH-HHHHHHH
Q 007134 358 CGMVDEGFSYFK--------RMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM--------LMPPNA-VIWRTLL 420 (616)
Q Consensus 358 ~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd~-~~~~~ll 420 (616)
.|+++.|.+++. .+.+- +..|. +-.+++..+.+.++-+-|..++.+. .-.+.. .+|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 44432 33444 4456778888888866666666544 222222 3444444
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
..-.++|+.++|...++++++.+|++......++.+|++. +.+.|..+-+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 5557789999999999999999999999999999999876 4555655543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-06 Score=78.56 Aligned_cols=403 Identities=13% Similarity=0.068 Sum_probs=223.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHH
Q 007134 55 SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELY 131 (616)
Q Consensus 55 ~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 131 (616)
+..-+..+..+-...+-... ..+.--+...|...| ++++|..++..+.+ ++...|-.|.-.+.-.|.+.+|..+-
T Consensus 37 DytGAislLefk~~~~~EEE-~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 44445555555443332111 122222333445677 89999999876543 56677888887777788888887775
Q ss_pred HHHHHCCCCCCcch-HHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC
Q 007134 132 SKMHVSGIKPDTHT-YPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RD 208 (616)
Q Consensus 132 ~~m~~~g~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~ 208 (616)
... |+... -..++....+.++-++-..+|+.+... ..-.-+|..+.--.-.+++|.+++.++.. |+
T Consensus 115 ~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 115 EKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred hhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 543 33333 333445556778877777777776442 12234455555555678999999998865 44
Q ss_pred hhHHHH-HHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCchHHHHH--------------HHHHHH
Q 007134 209 LVAWNS-VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE--LGALALGRR--------------AHTYVW 271 (616)
Q Consensus 209 ~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~--------------~~~~~~ 271 (616)
-...|. |.-+|.+..-++-+.++++-.++. -||+ |+..=+.+|.. .=.-..|.+ ..+.+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 445554 345677888888888888777664 3443 22223333322 111111111 111222
Q ss_pred HhCC------CCc-----------hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC-------HH
Q 007134 272 KVGL------SDN-----------VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGF-------GK 327 (616)
Q Consensus 272 ~~g~------~~~-----------~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~-------~~ 327 (616)
+.++ +.- +..--.|+-.|.+.|++.+|..+.......++.-|-.-...++..|+ ..
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 2211 101 11122233446777888888877777765444444333333333332 33
Q ss_pred HHHHHHHHHHhCCCcCCHHH-HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 328 EALELFKEMEIGGFVPGEVT-FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (616)
-|...|+-.-+++..-|... --++.+++.-...+++.+-+++.+.. |=...|...+ .+..+++..|.+.+|+++|-+
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhh
Confidence 45555544444443333211 12333344445567777777777754 2223333333 467788888888888888877
Q ss_pred CC-CC-CcHHHHHHHHH-HHHHcCCcHHHHHHHHHHHhcCCC-C-CCchhhhhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 407 ML-MP-PNAVIWRTLLG-ACTIHGHSAIAEIARSTLLQLEPK-H-SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 407 m~-~~-pd~~~~~~ll~-a~~~~g~~~~a~~~~~~~~~~~p~-~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
+. .+ .|..+|.+++. .|.++|..+.|-.++- +.+.. . ......+++-+.+++.+=-|.+.|+.+...+.
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 63 22 36667766655 4577777777766543 33322 1 12233566777788888888888887766543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-06 Score=86.30 Aligned_cols=123 Identities=15% Similarity=0.020 Sum_probs=65.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 359 (616)
.-+...|-..|++++|++..++.... .+..|..-...|-..|++.+|.+.++..+... .-|...=+-....+.+.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCC
Confidence 34445555666666666666655432 23345555556666666666666666665532 123333344445555666
Q ss_pred ChHHHHHHHHHhHHhhCCCCChhh------H--HHHHHHHHhcCCHHHHHHHHHhC
Q 007134 360 MVDEGFSYFKRMKDEYGIMPKIEH------F--GCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 360 ~~~~a~~~~~~m~~~~~~~p~~~~------~--~~li~~~~~~g~~~~A~~~~~~m 407 (616)
++++|.+++....+. +..|.... | .....+|.+.|++..|++.|...
T Consensus 277 ~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 277 RIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666655442 22222111 1 23345667777777776655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-05 Score=86.44 Aligned_cols=409 Identities=13% Similarity=0.030 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 007134 58 KLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKM 134 (616)
Q Consensus 58 ~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 134 (616)
....+|..+....+.+.-...|..|-..|.... ++..|.+.|++.-+ .|+.+|......|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 456677777666665555567889999998877 89999999997654 57788999999999999999998883222
Q ss_pred HHCC-CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHH
Q 007134 135 HVSG-IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWN 213 (616)
Q Consensus 135 ~~~g-~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~ 213 (616)
-+.. ...-...|...--.+...+++..+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-++.+|-
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 2211 00011122223334556677888888888887765 667889999999999999999999999877653332221
Q ss_pred H-H--HHHHHhCCCccHHHHHHHHHHHC------------------------------------------------CCCC
Q 007134 214 S-V--INGFASNGKPNEALTLFREMASE------------------------------------------------GVEP 242 (616)
Q Consensus 214 ~-l--i~~~~~~g~~~~A~~~~~~m~~~------------------------------------------------g~~p 242 (616)
. . ...-+..|.+++|+..+...... ...-
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 1 1 11223344555555444443221 0011
Q ss_pred CHHHHHHHHHHHHhcCchH--H----HHHH-HHHHHHhCC--------------------CCchhHHHHHHHHHHh----
Q 007134 243 DGYTMVSLFSACAELGALA--L----GRRA-HTYVWKVGL--------------------SDNVNVNNALLDFYSK---- 291 (616)
Q Consensus 243 ~~~t~~~ll~a~~~~~~~~--~----a~~~-~~~~~~~g~--------------------~~~~~~~~~li~~y~~---- 291 (616)
+...|..+-.+|.-.-..+ . ...+ +.+....+. ..+...|..|+.-|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 1111111111111000000 0 0000 000000010 0111122222221111
Q ss_pred cC----CHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHH
Q 007134 292 CG----IIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 292 ~g----~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 364 (616)
+| +...|...+.... ..+...||.|... ...|.+.-|...|-+-.... +-...+|..+.-.|....+++.|
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHh
Confidence 11 1123444444332 2355666666444 44455555555555444321 23445666666667778889999
Q ss_pred HHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHHcCCcHHHHHHH
Q 007134 365 FSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPPNAVIWRTLLGACTIHGHSAIAEIAR 436 (616)
Q Consensus 365 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd~~~~~~ll~a~~~~g~~~~a~~~~ 436 (616)
...|.... .+.| +...|-.........|+.-++..+|..- +--|+..-|.....-...+|+.++-+...
T Consensus 870 ~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 870 EPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred hHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 99998886 4444 4677777766677788888888888552 23456666666666666777765544433
Q ss_pred ----------HHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 437 ----------STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 437 ----------~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
++.++-.|++..+|...+......+.+++|.....+.
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3446678888888888888888888888887776554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-06 Score=83.78 Aligned_cols=158 Identities=15% Similarity=0.049 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc----C
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH----C 358 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~ 358 (616)
.....+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCc
Confidence 33345567788888888887765 45666666788888999999999999998874 333 444445554432 3
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCc-HHHHHH
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHS-AIAEIA 435 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~-~~a~~~ 435 (616)
..+.+|..+|+++.+ ...++..+.+.+..+....|++++|.+++++. ...| |..++..++......|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 468999999999876 45577888888888999999999999998775 3445 567777888888888887 677788
Q ss_pred HHHHHhcCCCCC
Q 007134 436 RSTLLQLEPKHS 447 (616)
Q Consensus 436 ~~~~~~~~p~~~ 447 (616)
+.++....|+.+
T Consensus 259 l~qL~~~~p~h~ 270 (290)
T PF04733_consen 259 LSQLKQSNPNHP 270 (290)
T ss_dssp HHHCHHHTTTSH
T ss_pred HHHHHHhCCCCh
Confidence 888888888743
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.9e-05 Score=80.92 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=150.1
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHH
Q 007134 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLF 232 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (616)
+...+-+++|..+|... ..+....+.||. .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|
T Consensus 1058 ai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHH
Confidence 33444455555555432 333334444443 245666776666666554 46999999999999999999887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh
Q 007134 233 REMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312 (616)
Q Consensus 233 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 312 (616)
-+. .|...|..++.++.+.|.+++-.+++..+.+..-+|.+ -+.||-+|++.+++.+-++... .||+.-
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~ 1196 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVAN 1196 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchh
Confidence 653 36678999999999999999999988888877666554 4678889999999887766543 345444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHH
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLG 392 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 392 (616)
...+..-|...|.++.|.-+|.. ...|..|...+...|.+..|.+.-+.. .+..+|-.+-.+|.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACV 1260 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHh
Confidence 45555555555555555444432 223444444444445544444333222 23444444444444
Q ss_pred hcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 393 RAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 393 ~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
..+.+.-|. --| +-..+.-..-|+.-|...|-+++-+.+++..++++.-..+.|.-|+-+|++
T Consensus 1261 d~~EFrlAQ----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1261 DKEEFRLAQ----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred chhhhhHHH----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 333322221 011 111222333444445555555555555555554444444444444444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00019 Score=83.36 Aligned_cols=360 Identities=9% Similarity=-0.031 Sum_probs=186.7
Q ss_pred HHHHhCCCCHHHHHHHHhhCCCCChhH--HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHH
Q 007134 84 YAIVSLSFPMSYAHNIFSHVQDPNIFT--WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161 (616)
Q Consensus 84 ~~y~~~~~~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~ 161 (616)
..|...| ++.+|..........+... ...........|++..+.+++..+.......+..........+...|++++
T Consensus 349 ~~~~~~g-~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 349 EAWLAQG-FPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHCC-CHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 3344444 5666665555554332211 111122334456666666666554221111122222233334456677777
Q ss_pred HHHHHHHHHHhCC------CCc--HHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh----hHHHHHHHHHHhCCCc
Q 007134 162 GEQTHSVAIRNGF------ESL--VFVQNSLVHMYAAFGHVKDACKVFELMSE----RDL----VAWNSVINGFASNGKP 225 (616)
Q Consensus 162 a~~~~~~~~~~g~------~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~ 225 (616)
+...+..+...-- .+. ......+...+...|++++|...+++... .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 7777776644310 111 11222333455677888888777766432 121 2345555666778888
Q ss_pred cHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcC
Q 007134 226 NEALTLFREMASEGV---EP--DGYTMVSLFSACAELGALALGRRAHTYVWKV----GLS--D-NVNVNNALLDFYSKCG 293 (616)
Q Consensus 226 ~~A~~~~~~m~~~g~---~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~y~~~g 293 (616)
++|...+.+.....- .+ ...++..+...+...|+++.|...+++.... +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 888877777653210 11 1223444555667778888887777765542 211 1 1233444555666678
Q ss_pred CHHHHHHHHHhcCC------C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcCCHHHH--HHHHHHHhcCC
Q 007134 294 IIIAAQRVFREMRK------R--NAVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVPGEVTF--VGVLYACSHCG 359 (616)
Q Consensus 294 ~~~~A~~~f~~m~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~--~~ll~a~~~~g 359 (616)
++++|...+++... + ....+..+...+...|++++|.+.+.+.... +..+..... ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 88888777766532 1 1223344555666778888887777776432 110000000 01123334467
Q ss_pred ChHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCc-HHHHHHHHHHHHHcCC
Q 007134 360 MVDEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPPN-AVIWRTLLGACTIHGH 428 (616)
Q Consensus 360 ~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd-~~~~~~ll~a~~~~g~ 428 (616)
+.+.|...+...... ..... ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+
T Consensus 668 ~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 668 DKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 777777776655421 10000 011234556677777777777777654 12222 2355556667777788
Q ss_pred cHHHHHHHHHHHhcCCC
Q 007134 429 SAIAEIARSTLLQLEPK 445 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~ 445 (616)
.++|...+.+++++...
T Consensus 747 ~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 747 KSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 88888887777765543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.1e-05 Score=88.03 Aligned_cols=360 Identities=13% Similarity=0.006 Sum_probs=222.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH----HHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 007134 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL----LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187 (616)
Q Consensus 112 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 187 (616)
......+...|++.+|+...... +|......+ .......|+++.+...+..+.......+..........
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAA------GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 34455567778877777655443 122211122 22334456776666665554211112223333445556
Q ss_pred HHhcCCHHHHHHHHhhcCC----CC------hh--HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCH----HHHHHHH
Q 007134 188 YAAFGHVKDACKVFELMSE----RD------LV--AWNSVINGFASNGKPNEALTLFREMASEGVEPDG----YTMVSLF 251 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~----~~------~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll 251 (616)
+...|++++|...++.... .+ .. ....+...+...|++++|...+++....-...+. .....+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 6788999999888876521 11 11 1122334566899999999999988763211222 2334455
Q ss_pred HHHHhcCchHHHHHHHHHHHHh----CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----hhhHHH
Q 007134 252 SACAELGALALGRRAHTYVWKV----GL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-------RN----AVSWST 315 (616)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~~----~~~~~~ 315 (616)
..+...|+++.|...+...... |. .........+...+...|+++.|...+++... ++ ...+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 5667889999999999887653 21 11123455667788899999999998876542 11 123444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC--CCcCC--HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHH-----H
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIG--GFVPG--EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-----C 386 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~ 386 (616)
+...+...|++++|...+.+.... ...+. ...+..+.......|+.++|...++..............+. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 556677789999999999887542 11122 23444455677789999999999988854211111111111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-C-CcH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC------CCCchhhhh
Q 007134 387 MVDLLGRAGLVKQAYEYIQNMLM-P-PNA----VIWRTLLGACTIHGHSAIAEIARSTLLQLEPK------HSGDYVLLS 454 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~-~-pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~ 454 (616)
.+..+...|+.+.|...+..... . ... ..+..+..++...|+.++|...+++++..... ....+..++
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 22445668999999999876631 1 111 12445667788999999999999998654221 123456788
Q ss_pred HHhHhcccchHHHHHHHHHhhCC
Q 007134 455 NLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 455 ~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.+|.+.|+.++|...+.+..+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999998887643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-05 Score=77.13 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=46.5
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCch--hHHHHHHHHHHh
Q 007134 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNV--NVNNALLDFYSK 291 (616)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~y~~ 291 (616)
+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+....+... .++. ..+..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3345556666666666666665542 22333444455555555666666655555544321 1111 223345555556
Q ss_pred cCCHHHHHHHHHhcC
Q 007134 292 CGIIIAAQRVFREMR 306 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~ 306 (616)
.|++++|..+|++..
T Consensus 199 ~G~~~~A~~~~~~~~ 213 (355)
T cd05804 199 RGDYEAALAIYDTHI 213 (355)
T ss_pred CCCHHHHHHHHHHHh
Confidence 666666666665543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-05 Score=83.22 Aligned_cols=285 Identities=12% Similarity=-0.002 Sum_probs=185.5
Q ss_pred HHHHhCCCCHHHHHHHHhhCCC--CChhH-HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHH------
Q 007134 84 YAIVSLSFPMSYAHNIFSHVQD--PNIFT-WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS------ 154 (616)
Q Consensus 84 ~~y~~~~~~~~~A~~~f~~m~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~------ 154 (616)
..+...| ++++|++.++.-.. .|..+ .......+.+.|+.++|..+|+.++..+ |+...|-..+..+.
T Consensus 12 ~il~e~g-~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAG-DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCC-CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3456777 89999999976543 45444 4566778888999999999999999865 77777666665554
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHhhcCCCChh-HHHHHHHHHHhCCCccHHHHHH
Q 007134 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK-DACKVFELMSERDLV-AWNSVINGFASNGKPNEALTLF 232 (616)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~-~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 232 (616)
...+.+...++++.+...- |.......+.-.+..-..+. .+...+..+..+.+. +++.+-.-|.......-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 1224566777787775542 22221111211122212222 233334444445543 4555555555444444444555
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007134 233 REMASE----G----------VEPDG--YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296 (616)
Q Consensus 233 ~~m~~~----g----------~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 296 (616)
...... + -.|.. .++.-+...+...|+.++|..+.+..++.. +..+..|..-...|-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 554322 1 12333 244556677788999999999999998874 444788888899999999999
Q ss_pred HHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH--------HHHHHHHHhcCCChHHHH
Q 007134 297 AAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT--------FVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 297 ~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--------~~~ll~a~~~~g~~~~a~ 365 (616)
+|.+..+....- |-..-+-.+..+.++|+.++|.+++......+..|-... ..-...+|.+.|++..|+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999887754 344455567788899999999999998887665443311 133456788899999999
Q ss_pred HHHHHhHHh
Q 007134 366 SYFKRMKDE 374 (616)
Q Consensus 366 ~~~~~m~~~ 374 (616)
+-|..+.+.
T Consensus 326 k~~~~v~k~ 334 (517)
T PF12569_consen 326 KRFHAVLKH 334 (517)
T ss_pred HHHHHHHHH
Confidence 888877664
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-05 Score=72.71 Aligned_cols=199 Identities=17% Similarity=0.108 Sum_probs=95.1
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..++.. +.+..+.|....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~---- 111 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGA---- 111 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhH----
Confidence 3444455555555555555555555532 1222344444444445555555555554444432 223334444444
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHH
Q 007134 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKR 370 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 370 (616)
-+|..|++++|...|++......-|. ..||..+.-+..+.|+.+.|..+|++
T Consensus 112 ---------------------------FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 112 ---------------------------FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred ---------------------------HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 44445555555555555444311111 13444444444455555555555555
Q ss_pred hHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 371 MKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 371 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
..+ ..|+ ......+.....+.|++..|..+++... ..++..+.-..|..-...||.+.+.+.-.++....|.+
T Consensus 165 aL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 165 ALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 443 1122 3334445555555555555555554441 22444444444555556666666666555555555553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00017 Score=74.36 Aligned_cols=380 Identities=12% Similarity=0.038 Sum_probs=182.6
Q ss_pred hCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHcCCCcHHHH
Q 007134 88 SLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH-TYPFLLKAISKLADVRMGE 163 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~ 163 (616)
+.| +-++|......-.. ++-+.|..+.-.+-...++++|+..|+..+.. .||.. .+.-+--.-++.++++...
T Consensus 53 ~lg-~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLG-KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred ccc-chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 344 66666665554332 34566777766666667777777777777663 34433 3332222233445555544
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHH------HHHHhCCCccHHHHHH
Q 007134 164 QTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-----RDLVAWNSVI------NGFASNGKPNEALTLF 232 (616)
Q Consensus 164 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li------~~~~~~g~~~~A~~~~ 232 (616)
.....+.+.. +.....|..+.-++.-.|+...|..+.+...+ ++...+.-.. .....+|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4444444332 23344455555555566666666665554432 2222232222 2233455555555554
Q ss_pred HHHHHCCCCCCHHHH-HHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCC--
Q 007134 233 REMASEGVEPDGYTM-VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ-RVFREMRKR-- 308 (616)
Q Consensus 233 ~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~m~~~-- 308 (616)
..-... ..|...+ -+-...+.+.+++++|..++..++... +.+...|-.+..++++--+.-++. .+|....+.
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 443221 1122222 222334455566666666666665543 333333444444444222222222 444433321
Q ss_pred ChhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH----HHHHHHHhHHhhC-------
Q 007134 309 NAVSWSTLVVGLAVNGF-GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE----GFSYFKRMKDEYG------- 376 (616)
Q Consensus 309 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~------- 376 (616)
....-..+--....... .+..-+++..+.+.|++|- |..+.+-+-.....+- +..+...+... |
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~ 361 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDD 361 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccc-cCCCcccc
Confidence 00000001011111122 2233344455556665543 3333333322221111 11111111110 0
Q ss_pred ---CCCChhhH--HHHHHHHHhcCCHHHHHHHHHhC-CCCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 377 ---IMPKIEHF--GCMVDLLGRAGLVKQAYEYIQNM-LMPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 377 ---~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m-~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
-+|....| -.++..+-+.|+++.|..+++.. .-.|.. ..|..-...+...|++++|...++++.+++-.|...
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 13444433 35666777888888888888765 345554 345555566777788888888888887776543221
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
-.--+.-..++.+.++|.++.....+.|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 11233444567788888888777765553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-05 Score=78.86 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCC---------CCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 418 TLLGACTIHGHSAIAEIARSTLLQLEP---------KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 418 ~ll~a~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
....++...|+.+.|...++.+....- .........+.++...|++++|.+.+.......
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 344555666777777777766633111 013334466677788999999999988776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00097 Score=68.98 Aligned_cols=408 Identities=11% Similarity=0.028 Sum_probs=248.7
Q ss_pred HhhcCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCC--C-CChhHHHHHHHHHHhcCCchHH
Q 007134 51 VCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ--D-PNIFTWNTMIRGYAESANPLLA 127 (616)
Q Consensus 51 ac~~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A 127 (616)
.|-+..+.|....+..++..+ .+.+.|..+--.+.... ++++|.+.|.... + .|...|--+.-.-++.|+++..
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK-~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDK-KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 455777888888888777653 57788887766666666 8999999998643 3 4667777776667788899888
Q ss_pred HHHHHHHHHCCCCCC-cchHHHHHHHHHcCCCcHHHHHHHHHHHHhC-CCCcHHHHHHHH------HHHHhcCCHHHHHH
Q 007134 128 VELYSKMHVSGIKPD-THTYPFLLKAISKLADVRMGEQTHSVAIRNG-FESLVFVQNSLV------HMYAAFGHVKDACK 199 (616)
Q Consensus 128 ~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li------~~y~~~g~~~~A~~ 199 (616)
.+.-.+.++. .|+ ...|.....+.--.|+...|..+.+...+.. ..|+...+.-.. ....+.|.+++|.+
T Consensus 129 ~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 8888888774 344 4467777778888899999999999988765 245544443222 34567899999998
Q ss_pred HHhhcCCC--Chh-HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHHhC
Q 007134 200 VFELMSER--DLV-AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA--ELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 200 ~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g 274 (616)
.+...... |-. .--+...-+.+.++.++|..++..++.. .||..-|...+..+. -.+..+....++....+.-
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 88765532 222 2334566788999999999999999886 577777766665554 2333333336665554321
Q ss_pred ---CCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCCCC-hhhHHHHHHHHHHcCCHHHHH----HHHHHHHhCC-----
Q 007134 275 ---LSDNVNVNNALLDFYSKCGII-IAAQRVFREMRKRN-AVSWSTLVVGLAVNGFGKEAL----ELFKEMEIGG----- 340 (616)
Q Consensus 275 ---~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~----~l~~~m~~~g----- 340 (616)
..|-....+ ++. .-.+ +...+++..+.++. +..+..+.+-|-.-...+-.. .+...+...|
T Consensus 285 ~r~e~p~Rlpls-vl~----~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 285 PRHECPRRLPLS-VLN----GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred cccccchhccHH-HhC----cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 111111111 110 0111 12222333332222 223333333332222111111 1111111111
Q ss_pred -----CcCCHH--HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC--CC
Q 007134 341 -----FVPGEV--TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML--MP 410 (616)
Q Consensus 341 -----~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~ 410 (616)
-+|... |+-.+...+-+.|+++.|..+.+.... -.|+ ++.|-.-.+++...|.+++|..++++.. -.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 134443 334556677788999999999988874 3455 6667677788889999999999988773 34
Q ss_pred CcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc-------h--hhhhHHhHhcccchHHHHHHHHH
Q 007134 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD-------Y--VLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~--~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
||..+-.--..-..+.++.++|..+..+.-+.+-+-... + +-=+.+|.++|++.+|.+=+..+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 555544344455567788888888887775433221111 1 12356777888887777655443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-05 Score=72.82 Aligned_cols=381 Identities=12% Similarity=0.061 Sum_probs=219.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHH-HHHHHHHcC
Q 007134 81 YLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYP-FLLKAISKL 156 (616)
Q Consensus 81 ~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~~~~~~ 156 (616)
+.+.-+.+.. ++++|.+++..-.+ ++....+.|..+|-...++..|-+.|+++-.. -|...-|. --..++.+.
T Consensus 15 aviy~lI~d~-ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDA-RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 4444445655 78888888765443 35566777888888888888888888888663 34433332 123445566
Q ss_pred CCcHHHHHHHHHHHHhCCCCcHHHHHHHHH--HHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHhCCCccHHHHHHH
Q 007134 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVH--MYAAFGHVKDACKVFELMS-ERDLVAWNSVINGFASNGKPNEALTLFR 233 (616)
Q Consensus 157 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 233 (616)
+.+..|..+...+... ++...-..-+. ..-..+++..+..+.++.+ +.+..+.+.......+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 6777777777666432 11111111111 2234678888888888887 4566666666666778889999999888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCC-------------c---------------hhHHHHH
Q 007134 234 EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSD-------------N---------------VNVNNAL 285 (616)
Q Consensus 234 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-------------~---------------~~~~~~l 285 (616)
...+-+---....|+..+ +..+.++.+.|.+...+++.+|+.. | +..+|.-
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 876644333345665544 4456788888888888888876532 1 1223333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 286 LDFYSKCGIIIAAQRVFREMRKR-----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.- ..+++.+..+-+.-+...+. -...||..++-.|++..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHH
Confidence 44567889999999999999865 677765553322 23455555555555555433 345799999999999988
Q ss_pred hHHHHHHHHHhHHhhCC-CCChhhHHHHHHHHH-hcCCHHHHHHHHHhCCCCCcHHHHHHHHHHH-HHcCCcH----HHH
Q 007134 361 VDEGFSYFKRMKDEYGI-MPKIEHFGCMVDLLG-RAGLVKQAYEYIQNMLMPPNAVIWRTLLGAC-TIHGHSA----IAE 433 (616)
Q Consensus 361 ~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~-~~~g~~~----~a~ 433 (616)
++.|-+++.+-... -. -.+...|+ |++++. -.-..++|++-++.+.-..-...-..-+..- .++.+-+ .+.
T Consensus 326 f~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 326 FDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888877643210 00 01122222 233332 2344566655554331000000000011111 1111211 222
Q ss_pred HHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 434 IARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 434 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+-++..+++- ......-+..|.+..++..+.++|+.-.+
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 2333333322 11234556677888888888888876544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00037 Score=73.38 Aligned_cols=387 Identities=15% Similarity=0.060 Sum_probs=230.7
Q ss_pred HhhcCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC----CChhHHHHHH-HHHH-hcCCc
Q 007134 51 VCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD----PNIFTWNTMI-RGYA-ESANP 124 (616)
Q Consensus 51 ac~~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~----~~~~~~~~li-~~~~-~~g~~ 124 (616)
.|.+....+-..++.....-+. ....|+.+-..|..+| .-..|..+.+.-.. |+..+--.|+ ..|. +-+..
T Consensus 334 ~~~g~f~~lae~fE~~~~~~~~--~~e~w~~~als~saag-~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPFSFG--EHERWYQLALSYSAAG-SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHHHHHHHHHHHHhHhhhh--hHHHHHHHHHHHHHhc-cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh
Confidence 3445555566666666655542 4568888888999998 88899999875432 3323322222 2333 24566
Q ss_pred hHHHHHHHHHHHC--CCC--CCcchHHHHHHHHHcC----C-------CcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 007134 125 LLAVELYSKMHVS--GIK--PDTHTYPFLLKAISKL----A-------DVRMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189 (616)
Q Consensus 125 ~~A~~l~~~m~~~--g~~--pd~~t~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 189 (616)
+++++.-.+.... +.. .....|..+.-+|... . ...++.+.++.+++.+ +.|+.+.--+---|+
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYA 489 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 6776666655541 111 1122233333233211 1 1345667777777765 333333333444578
Q ss_pred hcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 007134 190 AFGHVKDACKVFELMS----ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265 (616)
Q Consensus 190 ~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 265 (616)
..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+.....- .-|..-...-+..-...++.+++..
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHH
Confidence 8899999988877654 3578899999999999999999999998765541 1111100000111111222222221
Q ss_pred HHHHHH---------------------HhCC-------CCchhHHHHHHHHHH---hcCCHHHHHHHHHhcCCCC-----
Q 007134 266 AHTYVW---------------------KVGL-------SDNVNVNNALLDFYS---KCGIIIAAQRVFREMRKRN----- 309 (616)
Q Consensus 266 ~~~~~~---------------------~~g~-------~~~~~~~~~li~~y~---~~g~~~~A~~~f~~m~~~~----- 309 (616)
....+. +.|. ...+.++.-+..... +.-..+..+..+...+.++
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 111111 1111 011222222221111 1111111112222222232
Q ss_pred -hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHH
Q 007134 310 -AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGC 386 (616)
Q Consensus 310 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 386 (616)
...|......+...++.++|...+.+.... .|- ...|.-....+...|..++|.+.|.... .+.|+ +...++
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~A 723 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHH
Confidence 234666677788889999998888877653 333 2344444456677899999999998876 56676 778899
Q ss_pred HHHHHHhcCCHHHHHH--HHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 387 MVDLLGRAGLVKQAYE--YIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 387 li~~~~~~g~~~~A~~--~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
+..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|-+.|..++++++.+|
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999998877777 77666 4667 789999999999999999999999999999998765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.4e-07 Score=86.27 Aligned_cols=217 Identities=14% Similarity=0.032 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-CC---ChhhHHHH-HHHH
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-KR---NAVSWSTL-VVGL 320 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-~~---~~~~~~~l-i~~~ 320 (616)
+-.-+.+++..+|+.+.+. ..+.+.. .|.......+...+...++-+.+..-+++.. .+ +-.++..+ ...+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3344555555566544332 2222222 4444444444433333344555555554433 22 11122222 2345
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhh---HHHHHHHHHhcCCH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH---FGCMVDLLGRAGLV 397 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~ 397 (616)
...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|... ..+.+....-.+.+
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhH
Confidence 5679999999988753 3456666778889999999999999999974 4455322 23334444334579
Q ss_pred HHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc-hHHHHHHHHHh
Q 007134 398 KQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW-LNVQEVRRTMV 474 (616)
Q Consensus 398 ~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~ 474 (616)
.+|..+|+++. ..+++.+.+.+..++...|++++|+.+++++++.+|+++.+...++-+....|+. +.+.+.+..++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999994 4568889999999999999999999999999999999998888888888888988 66778888876
Q ss_pred h
Q 007134 475 K 475 (616)
Q Consensus 475 ~ 475 (616)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 5
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.3e-05 Score=73.28 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+.+...+...|..+.++.++++-.. ..||....+.|...+...+.+.+|.+.|....
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444555555555544443 24444444444444444555555555544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.8e-05 Score=78.41 Aligned_cols=359 Identities=12% Similarity=0.081 Sum_probs=221.8
Q ss_pred CCCCCChHHHHHHHH--HHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC-C--------
Q 007134 70 GVPLNNPDLGKYLIY--AIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS-G-------- 138 (616)
Q Consensus 70 g~~~~~~~~~~~li~--~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-------- 138 (616)
|+...|+.+-.++++ +|..-| +++.|.+-.+-+. +-..|..|.+.+++..+.+-|.-.+-.|... |
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG-~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIG-SMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEec-cHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 666678888888775 455677 8999988877664 4567999999999999888877777666432 1
Q ss_pred CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHH
Q 007134 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-DLVAWNSVIN 217 (616)
Q Consensus 139 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~ 217 (616)
-.|+ .+=..+.-.....|.+++|+.+|++..+.. .|=..|-..|.+++|.++-+.-..- =..||..-..
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 1232 222233333457789999999999887753 3445678889999999887643221 1124555555
Q ss_pred HHHhCCCccHHHHHHHHHH----------HCCC---------CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc
Q 007134 218 GFASNGKPNEALTLFREMA----------SEGV---------EPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278 (616)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~----------~~g~---------~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (616)
-+-..++.+.|++.|++.. .... ..|...|.--..-+...|+++.|+.+|..+.+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 5566777888888877631 1110 11222222223333455667777666665543
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHh--
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS-- 356 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-- 356 (616)
|-+++...+-.|+.++|-++-++- .|....-.+...|-..|++.+|..+|.+.+. |...|+.|-
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEn 1006 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKEN 1006 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhc
Confidence 344555666677777777776653 3555666788889999999999999987653 333333332
Q ss_pred -------------cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-----------CCC--
Q 007134 357 -------------HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-----------LMP-- 410 (616)
Q Consensus 357 -------------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~~-- 410 (616)
...+.-.|-.+|++. |.. ...-+..|-++|.+.+|+++--+- ...
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 233344455555544 111 122345688889888887764221 022
Q ss_pred CcHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----------------------cCCCC---------CCchhhhhHHhHh
Q 007134 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQ----------------------LEPKH---------SGDYVLLSNLYAY 459 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----------------------~~p~~---------~~~~~~l~~~y~~ 459 (616)
.|+...+.-..-+..+.++++|..++-.+.+ +-|.. ......++.++.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 2555555555556667777777665544311 12321 1124468888899
Q ss_pred cccchHHHHHH
Q 007134 460 EQRWLNVQEVR 470 (616)
Q Consensus 460 ~g~~~~a~~~~ 470 (616)
+|.+..|-+-|
T Consensus 1158 QG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1158 QGAYHAATKKF 1168 (1416)
T ss_pred ccchHHHHHHH
Confidence 99888776654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-05 Score=79.56 Aligned_cols=190 Identities=13% Similarity=0.163 Sum_probs=98.8
Q ss_pred HHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 007134 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALEL 332 (616)
Q Consensus 253 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 332 (616)
+......+.+|..+++.+..... -...|..+.+-|+..|+++.|.++|-+.. .++--|..|.++|++++|.++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHH
Confidence 33344555555555555544321 12234455566666666666666665432 233445566666666666666
Q ss_pred HHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCc
Q 007134 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN 412 (616)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd 412 (616)
-.+.. |.......|.+-..-.-..|.+.+|.+++-.+.. |+. -|.+|-+.|..++.+++.++-- ||
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h--~d 879 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHH--GD 879 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhC--hh
Confidence 55443 2222333444444444555666666655544322 442 3456666666666666665532 22
Q ss_pred --HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 413 --AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 413 --~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
..|...+..-+-..|++..|+.-|-++ +.+..-.++|...+.|++|.++-+
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 234445555556666666666555432 233445566666666666665543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00015 Score=75.28 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=17.9
Q ss_pred CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 447 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+....-++..+...|++++|.+-+-...+
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 34455566666677777777666555444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=59.20 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=28.4
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 172 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0001 Score=70.15 Aligned_cols=306 Identities=11% Similarity=0.054 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH---HHHHcCCCcHHHHHHHHHHHHhCCCCcHHH-HHHHHHHH
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL---KAISKLADVRMGEQTHSVAIRNGFESLVFV-QNSLVHMY 188 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y 188 (616)
-+-..+..+|++..|+.-|....+ .|+..|.++. ..|...|.-..|.+-+...++. +||-.. --.-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 477778888999999999988865 2334444443 4566778888888888887774 566332 22234567
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 007134 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 189 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (616)
.+.|.+++|..-|+...+.+.. -+....++.+.-.. +++. .....+..+...|+...+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~~~-------~e~~---------~l~~ql~s~~~~GD~~~ai~~i~ 179 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLALI-------QEHW---------VLVQQLKSASGSGDCQNAIEMIT 179 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHHhH-------HHHH---------HHHHHHHHHhcCCchhhHHHHHH
Confidence 8899999999999887653321 11111111111111 1111 12223334455667777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH
Q 007134 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM---RKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345 (616)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (616)
.+++.. +-|...+..-..+|...|++..|..=++.. ...+....--+-..+...|+.+.++...++-.+ +.||.
T Consensus 180 ~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 180 HLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 776653 456667777777788888887776655444 344666666666777777888888877777766 45665
Q ss_pred HH-HH---HH------H---HHHhcCCChHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 346 VT-FV---GV------L---YACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 346 ~t-~~---~l------l---~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.. |. .| | ......+++.++....+...+. .|. ...+..+-..+...|++.+|++...+.
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 32 11 10 0 0112234444554444444432 122 112233334455566677776666555
Q ss_pred -CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 408 -LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 408 -~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
.+.|| +.++.--..+|.....++.|+.-|+++.+.++++.
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 35553 55666666666666667777777777766666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-05 Score=74.76 Aligned_cols=304 Identities=14% Similarity=0.056 Sum_probs=175.6
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHH-HHHHHHh
Q 007134 145 TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWNS-VINGFAS 221 (616)
Q Consensus 145 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~ 221 (616)
-|.+++.-+.+..+++.+.+++..-.+.. +.+....+.|...|-...++..|-..++++.. |...-|.. -...+-+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 35556666666667777777766655543 33455566677777777778888777777654 32222221 1244556
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSA--CAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 299 (616)
.+.+..|+++...|... |+...-..-+.+ ..+.+++..++.+.++.... .+..+.+.......+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 77778888887777542 222111111211 12345555555555544321 23444444455556777888888
Q ss_pred HHHHhcCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 300 RVFREMRKR----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 300 ~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
+-|+...+- ....||.-+ +..+.|++..|+++..++++.|++.... ++ -|..-++.+ .+.+
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiD-vrsv---- 229 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGID-VRSV---- 229 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCc-hhcc----
Confidence 777776542 345565444 3345677788888888877776542211 00 011111110 0000
Q ss_pred CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhCC----CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 376 GIMPKI-------EHFGCMVDLLGRAGLVKQAYEYIQNML----MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 376 ~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
-.|-. ..+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++..+.+-+.-+++++|
T Consensus 230 -gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 230 -GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred -cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 00111 122333344568889999999998886 33467776554321 334567777777777888888
Q ss_pred CCCCchhhhhHHhHhcccchHHHHHHHH
Q 007134 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRT 472 (616)
Q Consensus 445 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 472 (616)
-.+.++..+.-+|++..-++-|..++-+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 8788888888899998888888887653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-07 Score=57.75 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=25.5
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007134 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 274 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777888888888888888888877774
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.5e-06 Score=75.09 Aligned_cols=118 Identities=9% Similarity=0.051 Sum_probs=97.7
Q ss_pred CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH-HHcCC--cHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGAC-TIHGH--SAIA 432 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~-~~~g~--~~~a 432 (616)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| |..++..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666777777777665 34456888999999999999999999999877 3566 667888888764 67777 5999
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
..+++++++.+|+++..+..++..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999997643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=76.92 Aligned_cols=181 Identities=12% Similarity=-0.024 Sum_probs=113.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH--HHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NA---VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE--VTFV 349 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 349 (616)
....+..+...|.+.|++++|...|+++... +. .+|..+..++.+.|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4555666667777778888888777766532 11 35566677777778888888888877764211111 1333
Q ss_pred HHHHHHhcC--------CChHHHHHHHHHhHHhhCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHH
Q 007134 350 GVLYACSHC--------GMVDEGFSYFKRMKDEYGIMPKI-EHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420 (616)
Q Consensus 350 ~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll 420 (616)
.+..++.+. |+.++|.+.|+.+.+.+ |+. ..+..+... +...... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRM----DYLRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHH----HHHHHHH-----------HHHHHHHH
Confidence 333444433 56677777777776532 332 222221111 0000000 00112455
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCC---CchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHS---GDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.++++.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 668889999999999999998877654 56789999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-05 Score=87.07 Aligned_cols=201 Identities=12% Similarity=0.083 Sum_probs=164.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--------NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (616)
+.+...|-..|......+++++|++++++.... -.-.|.+++..-...|.-+...++|++..+.- -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 455667777778888889999999999887643 23478888888888888888999999987632 22356
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---cHHHHHHHHHHH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP---NAVIWRTLLGAC 423 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---d~~~~~~ll~a~ 423 (616)
|..|+..|.+.+..++|-++++.|.++++ -....|...++.+.+..+-+.|..++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888999999999999999999999766 56788999999999999999999999765 2233 344555666667
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCcc
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKK 480 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 480 (616)
.++|+.++++.+|+..+.-.|...+.|...+++-.+.|..+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999999999999999988899999999999999999999999998877643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0011 Score=63.47 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=142.5
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHH-----HHHHHHHhcCCHHHHH
Q 007134 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN-----ALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 225 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-----~li~~y~~~g~~~~A~ 299 (616)
-+.|++++-.+.+ +-|. .-..++--+.+.++..+|..+...+.- ..|...+.. ++..-......+.-|.
T Consensus 270 gEgALqVLP~L~~--~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 270 GEGALQVLPSLMK--HIPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CccHHHhchHHHh--hChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 4556666555443 2232 222334446677888888776554311 122222222 2222223333467788
Q ss_pred HHHHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 300 RVFREMRKR-----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 300 ~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
+.|+-+-.. ++.--.+|.+.+.-..++++++-.++....--...|.+.|+ +..|.+..|.+.+|+++|-.+...
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcCh
Confidence 888766532 34456788888888889999999998887654444555554 667888899999999999888641
Q ss_pred hCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHH-HHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 375 YGIMPKIEHFG-CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL-GACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 375 ~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
.+ .|..+|- .|...|.+.++++-|.+++-++....+..+...+| +-|-+.+.+--|-++|..+-.++|. +..+
T Consensus 423 -~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW 497 (557)
T KOG3785|consen 423 -EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW 497 (557)
T ss_pred -hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence 22 3344554 45678999999999999999887545665555544 5788999999999999999889987 5444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.8e-06 Score=72.58 Aligned_cols=121 Identities=10% Similarity=-0.006 Sum_probs=82.2
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 007134 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LM 409 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 409 (616)
.+|++..+ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 33443 33455566777777878777777764 22334677777777788888888888888766 24
Q ss_pred CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh
Q 007134 410 PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457 (616)
Q Consensus 410 ~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 457 (616)
.| +...|..+..++...|+.++|+..+++++++.|+++..+...+.+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 45 5677777777888888888888888888888888777666555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.8e-05 Score=73.50 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCH--HHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHH
Q 007134 295 IIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFG--KEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFK 369 (616)
Q Consensus 295 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 369 (616)
+++++..++++.+ ++..+|+.....+.+.|+. ++++++++++.+.. .-|..+|.....++.+.|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4444444444332 2333444333333333332 44555555555432 1233455555555555555666666666
Q ss_pred HhHHhhCCCCChhhHHHHHHHHHhc---CC----HHHHHHHH-HhCCCCC-cHHHHHHHHHHHHHc----CCcHHHHHHH
Q 007134 370 RMKDEYGIMPKIEHFGCMVDLLGRA---GL----VKQAYEYI-QNMLMPP-NAVIWRTLLGACTIH----GHSAIAEIAR 436 (616)
Q Consensus 370 ~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~-~~m~~~p-d~~~~~~ll~a~~~~----g~~~~a~~~~ 436 (616)
++.+. -..+...|+.....+.+. |. .++++++. +.+...| |...|+.+...+... ++..+|...+
T Consensus 167 ~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 55542 122344444443333332 21 23455555 3334566 667888888888763 3456688888
Q ss_pred HHHHhcCCCCCCchhhhhHHhHhcc------------------cchHHHHHHHHHh
Q 007134 437 STLLQLEPKHSGDYVLLSNLYAYEQ------------------RWLNVQEVRRTMV 474 (616)
Q Consensus 437 ~~~~~~~p~~~~~~~~l~~~y~~~g------------------~~~~a~~~~~~m~ 474 (616)
.++++.+|+++.+...|+++|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888888878888999987632 2356777777763
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.1e-06 Score=72.42 Aligned_cols=94 Identities=13% Similarity=-0.059 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhc
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 460 (616)
.+..+...+.+.|++++|...|+.. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4566788899999999999999887 3566 6789999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhC
Q 007134 461 QRWLNVQEVRRTMVKE 476 (616)
Q Consensus 461 g~~~~a~~~~~~m~~~ 476 (616)
|++++|...++...+.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00025 Score=71.64 Aligned_cols=346 Identities=11% Similarity=0.035 Sum_probs=214.3
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 007134 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195 (616)
Q Consensus 116 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 195 (616)
.+....|+++.|+.+|-+..... ++|...|+.=..++++.|++++|.+=-.+.++.. +.-..-|+-+..+..-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 34567899999999999998765 4477889999999999999999988777666653 333667888999999999999
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHH-HHCCCCCC--------HHHHHHHHHHHHhcC-----
Q 007134 196 DACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREM-ASEGVEPD--------GYTMVSLFSACAELG----- 258 (616)
Q Consensus 196 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~--------~~t~~~ll~a~~~~~----- 258 (616)
+|+..|.+-.+ .|...++-+..++.-.. ++.+.|..- .-.++.-+ ..+|..++...-+..
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999998765 34566777776662110 011111100 00000111 112222222221110
Q ss_pred --chHHHHHHHHHHHH--------hC-------CCC------------c----------hhHHHHHHHHHHhcCCHHHHH
Q 007134 259 --ALALGRRAHTYVWK--------VG-------LSD------------N----------VNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 259 --~~~~a~~~~~~~~~--------~g-------~~~------------~----------~~~~~~li~~y~~~g~~~~A~ 299 (616)
+.....+.+..+.. .| ..| | ..-...+.++.-+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 01111111111100 00 011 0 111234555566666777777
Q ss_pred HHHHhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC--C----HHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 300 RVFREMRKR--NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP--G----EVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 300 ~~f~~m~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
+.+....+- +..-++....+|...|.+.+....-....+.|..- + ...+..+..++.+.++++.|..+|.+.
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 777665433 34445666778888888777776666655544221 1 112233344666778888999988887
Q ss_pred HHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 372 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
...+ ..|+ .+.+....+++....+... +.|+. .-...-.+.+.+.|++..|...+.++++.+|+++..
T Consensus 325 Lte~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 325 LTEH-RTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred hhhh-cCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 6642 2222 2334445566665555443 45543 223333677889999999999999999999999999
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
|...+.+|.+.|.+.+|.+--+.-.+.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999876666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0013 Score=62.90 Aligned_cols=301 Identities=10% Similarity=0.080 Sum_probs=181.5
Q ss_pred HHHHhCCCCHHHHHHHHhhCCCCChhHHHHHH---HHHHhcCCchHHHHHHHHHHHCCCCCCcchHH-HHHHHHHcCCCc
Q 007134 84 YAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMI---RGYAESANPLLAVELYSKMHVSGIKPDTHTYP-FLLKAISKLADV 159 (616)
Q Consensus 84 ~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~~~~~~~~~ 159 (616)
..+...| ++.+|+.-|....+-|+..|.++- ..|...|+...|+.=|.+.++ .+||-..-. .-...+.+.|.+
T Consensus 46 k~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 46 KELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccH
Confidence 3344556 899999999998888888887765 478889999999999999887 678843221 122346788999
Q ss_pred HHHHHHHHHHHHhCCCCc--HHH------------HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhC
Q 007134 160 RMGEQTHSVAIRNGFESL--VFV------------QNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASN 222 (616)
Q Consensus 160 ~~a~~~~~~~~~~g~~~~--~~~------------~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 222 (616)
+.|..-|+.+++...... ..+ ....+..+.-.|+...|+.....+.+ -|...+..-..+|...
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhc
Confidence 999999999988642111 111 11222233444555555555555443 2444444445556666
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007134 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVF 302 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 302 (616)
|++..|+.-++..-+.. ..+..++--+-..+...|+.+.++....+..+. .||-..+-. .|-+ +.+..+.+
T Consensus 203 ~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~---~YKk---lkKv~K~l 273 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFP---FYKK---LKKVVKSL 273 (504)
T ss_pred CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHH---HHHH---HHHHHHHH
Confidence 66666555554443322 223334444444455555555555555544443 233221111 1111 12222222
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHH---HHHHHHHhcCCChHHHHHHHHHhHHhhCCCC
Q 007134 303 REMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF---VGVLYACSHCGMVDEGFSYFKRMKDEYGIMP 379 (616)
Q Consensus 303 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 379 (616)
+.| ......+++.++++-.+...+....-..+++ ..+-.++...|.+.+|++.-.++. .+.|
T Consensus 274 es~------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~ 338 (504)
T KOG0624|consen 274 ESA------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDP 338 (504)
T ss_pred HHH------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCc
Confidence 222 2345567888888888887765332222333 334456667889999999988887 4556
Q ss_pred C-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 007134 380 K-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP 411 (616)
Q Consensus 380 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 411 (616)
+ +.++---..+|.-...+++|+.-|+... ..+
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 6 8888888888988899999999988763 444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00085 Score=72.47 Aligned_cols=370 Identities=13% Similarity=0.158 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 007134 56 KHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMH 135 (616)
Q Consensus 56 ~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 135 (616)
+..........+..|. .++.++|+|...|...+.+++. .+.+-+ .-=+..+.-|+..+++.-|.-.|++=.
T Consensus 854 LklLlp~LE~~i~eG~--~d~a~hnAlaKIyIDSNNnPE~---fLkeN~----yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 854 LKLLLPWLESLIQEGS--QDPATHNALAKIYIDSNNNPER---FLKENP----YYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHHHHHHHHHhccC--cchHHHhhhhheeecCCCChHH---hcccCC----cchhhHHhhhhcccCCceEEEeecccC
Confidence 4455566667777885 4789999999999876523432 222211 111223444555555544433332211
Q ss_pred HC----CCCCCcchHHHHHHHHHcCCCcHH-----------HHHHHHHHHHhCC--CCcHHHHHHHHHHHHhcCCHHHHH
Q 007134 136 VS----GIKPDTHTYPFLLKAISKLADVRM-----------GEQTHSVAIRNGF--ESLVFVQNSLVHMYAAFGHVKDAC 198 (616)
Q Consensus 136 ~~----g~~pd~~t~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~ 198 (616)
.. ++--....|....+-+....|.+. -+++.++.+..++ ..|+.-.+.-+.++...+-..+-.
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 00 011111223333333333333332 2455566666554 235566677788888888888888
Q ss_pred HHHhhcCC-CCh-----hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 007134 199 KVFELMSE-RDL-----VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWK 272 (616)
Q Consensus 199 ~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 272 (616)
++++++.- +++ ..-|.||-.-.+. +..+.+++.+++..-+ .|+ +...+...+-+++|..+|...
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf-- 1074 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF-- 1074 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh--
Confidence 88888752 322 2344455444443 4556677777764432 222 344556667788888888764
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHH
Q 007134 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVL 352 (616)
Q Consensus 273 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 352 (616)
..+....+.|++ ..+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. .|...|.-++
T Consensus 1075 ---~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi 1140 (1666)
T KOG0985|consen 1075 ---DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVI 1140 (1666)
T ss_pred ---cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHH
Confidence 334445555554 457788888887776654 56889999999999999999988653 3567899999
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a 432 (616)
..+.+.|.+++-.+++....++ .-+|.+. +.||-+|++.+++.+-++++. -||..-...+..-|...|.++.|
T Consensus 1141 ~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aA 1213 (1666)
T KOG0985|consen 1141 DVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAA 1213 (1666)
T ss_pred HHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHH
Confidence 9999999999999999888765 5566655 578999999999999887764 47777778888899999999988
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
.-++.- .+.|..|+..+...|.+..|...-++.
T Consensus 1214 kl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1214 KLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 887764 446777788888888887777665544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0002 Score=79.72 Aligned_cols=223 Identities=15% Similarity=0.123 Sum_probs=165.8
Q ss_pred CCc-chHHHHHHHHHcCCCcHHHHHHHHHHHHh-CC---CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhHHH
Q 007134 141 PDT-HTYPFLLKAISKLADVRMGEQTHSVAIRN-GF---ESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-D-LVAWN 213 (616)
Q Consensus 141 pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~ 213 (616)
||. ..|..-+.-....++++.|+++.+++++. ++ .--..+|.+++++-...|.-+...++|++..+- | -..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 554 45666677777888889999988888764 11 112457888888888888888888999887652 2 34688
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhc
Q 007134 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALLDFYSKC 292 (616)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~ 292 (616)
.|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+.-. ...+.+..-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8889999999999999999999765 344556777888888888888888888888877521 22456666677788899
Q ss_pred CCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhcCCChHHH
Q 007134 293 GIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE--VTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 293 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 364 (616)
|+.+.++.+|+.... +....|+..|..=.++|+.+.+..+|++....++.|-. ..|.--|..=.+.|+-+.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 999999999998763 35678999999999999999999999999988877654 3344444433334444333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-05 Score=80.72 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=139.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 274 GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 274 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34566667778888999999999999999976 4677889999999999999999888877 4788899999988
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
......-+++|.++++....+ .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777788888888776542 1111112223467777777777543 4445 45677777777777777777
Q ss_pred HHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 432 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
|.+.|...+.++|++...++.++.+|.+.|+..+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777777777766544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.3e-06 Score=69.72 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
....-.+...+...|++++|..+|+-.. +.| +..-|..|..+|...|++++|+..+.++..++|+++.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4455566677889999999999998884 566 67889999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhh
Q 007134 459 YEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~ 475 (616)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998865
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00014 Score=74.04 Aligned_cols=216 Identities=15% Similarity=0.145 Sum_probs=148.1
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHH
Q 007134 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEAL 229 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 229 (616)
+.+.|++.+|.-.|+..++.. +-+...|--|....+..++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 456788888888888888875 56778888888888888888888888887765 35566777778888888888898
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCchHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007134 230 TLFREMASEGVE--------PDGYTMVSLFSACAELGALALGRRAHTYV-WKVGLSDNVNVNNALLDFYSKCGIIIAAQR 300 (616)
Q Consensus 230 ~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 300 (616)
+.|+..+....+ ++..+-.. +.......+....++|-.+ ...+..+|..+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888887654210 00000000 1111122233344444333 344555777788888888888888888888
Q ss_pred HHHhcCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH-HHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 301 VFREMRK--R-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV-TFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 301 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
.|+.... | |...||.|...++...+.++|+..|++..+ ++|+-+ ....|.-+|...|.+++|...|-.+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8887653 3 677888888888888888888888888877 566642 223355577788888888777766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00011 Score=67.85 Aligned_cols=154 Identities=11% Similarity=0.048 Sum_probs=111.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 365 (616)
+-.|.+.|+++......+.+..+. ..+...++.++++..+++..... +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446777888777655544332221 01122566677777777776643 446677888888899999999999
Q ss_pred HHHHHhHHhhCCCCChhhHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 366 SYFKRMKDEYGIMPKIEHFGCMVDLL-GRAGL--VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 366 ~~~~~m~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
..|++..+ -.+.+...+..+..++ .+.|+ .++|.+++++. ...| +..++..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998875 2233577788888764 67777 58999999887 3566 66788888899999999999999999999
Q ss_pred hcCCCCCCch
Q 007134 441 QLEPKHSGDY 450 (616)
Q Consensus 441 ~~~p~~~~~~ 450 (616)
++.|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9998765443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0001 Score=70.45 Aligned_cols=182 Identities=13% Similarity=-0.005 Sum_probs=126.0
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Chh---hH
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS-D-NVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAV---SW 313 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~---~~ 313 (616)
.....+......+...|+++.|...++.+.+.... + ....+..+..+|.+.|++++|...|+.+.+. +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34567777888899999999999999998876421 1 1246677889999999999999999998642 222 45
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHhCCCcCCHH-HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhH
Q 007134 314 STLVVGLAVN--------GFGKEALELFKEMEIGGFVPGEV-TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384 (616)
Q Consensus 314 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 384 (616)
..+..++.+. |+.++|.+.|+++... .|+.. ....+... .. . .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~---------~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL---------AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH---------HHHH
Confidence 5556666654 7889999999999874 45432 22111111 00 0 0000 0112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 385 GCMVDLLGRAGLVKQAYEYIQNM----LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
..+...|.+.|++++|...+++. +-.| ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667788999999999888776 2233 346888899999999999999998888765544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00051 Score=74.21 Aligned_cols=374 Identities=11% Similarity=0.013 Sum_probs=204.0
Q ss_pred CHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHH
Q 007134 92 PMSYAHNIFSHVQDPN---IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSV 168 (616)
Q Consensus 92 ~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~ 168 (616)
+...|...|-+..+.| ...|..|...|...-+...|...|+...+.+ .-|..........+++..+++.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3556666665444333 3578888888877777888888888876643 22445566777888888888888877211
Q ss_pred HHHhC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCH
Q 007134 169 AIRNG-FESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG 244 (616)
Q Consensus 169 ~~~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 244 (616)
.-+.. ...-..-|-.+.-.|.+.++...|..-|+.... .|...|..+..+|...|++..|+++|.+... +.|+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh
Confidence 11110 000111223344567778888888888877654 4777899999999999999999999998866 35554
Q ss_pred HHHHHHHH--HHHhcCchHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---------
Q 007134 245 YTMVSLFS--ACAELGALALGRRAHTYVWKVG------LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--------- 307 (616)
Q Consensus 245 ~t~~~ll~--a~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--------- 307 (616)
+|..... .-+..|.+.++...++.++... ...-..++-.+...+.-.|-..+|...|+...+
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 3332222 2356788888888888776431 111112222222222233333444444433221
Q ss_pred --CChhhHHHHHHHHHHcCCHH------HHHH-HHHHHHhCCCcCC--------------------HHHHHHHHHHHhc-
Q 007134 308 --RNAVSWSTLVVGLAVNGFGK------EALE-LFKEMEIGGFVPG--------------------EVTFVGVLYACSH- 357 (616)
Q Consensus 308 --~~~~~~~~li~~~~~~g~~~------~A~~-l~~~m~~~g~~p~--------------------~~t~~~ll~a~~~- 357 (616)
.+...|-.+-.++.---+.+ ..+. ++.+....+.-|+ ..+|..+...+.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 12333333322221100000 0011 1111222121111 1222222222211
Q ss_pred ---C----CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCC
Q 007134 358 ---C----GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGH 428 (616)
Q Consensus 358 ---~----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~ 428 (616)
+ .+...|...+....+ -...+...|+.|.-+ ...|.+.-|..-|-+- -..| ...+|..+...|..+.+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 1 112234444444433 122334555555433 4455555555544332 2334 56777777777777778
Q ss_pred cHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHH
Q 007134 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 472 (616)
++.|..+|.++..++|.+...+...+.+....|+.-++..+|..
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 88888888888888887777666666666677777777777665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-05 Score=78.55 Aligned_cols=215 Identities=13% Similarity=0.120 Sum_probs=172.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007134 175 ESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254 (616)
Q Consensus 175 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 254 (616)
+|--..-..+...+.+.|-...|..+|++. ..|...|..|...|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444556677888999999999999999985 5688899999999999999999888877 378999998888887
Q ss_pred HhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHH
Q 007134 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALE 331 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 331 (616)
.+..-+++|.++.++.... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777788888887765432 1111222223468899999999876543 45688888888899999999999
Q ss_pred HHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 332 LFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 332 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.|..-.. ..||. ..|+.+-.++.+.++-.+|...+.+..+- + .-+...|...+....+.|.+++|++.+.++
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9998876 45665 67999999999999999999999998873 4 455667888888889999999999999877
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.9e-05 Score=80.95 Aligned_cols=137 Identities=12% Similarity=0.037 Sum_probs=112.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHH
Q 007134 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387 (616)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 387 (616)
++..+-.|.....+.|++++|+.+++...+ ..||. .....+...+.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 577788888888999999999999999988 56765 4566777888999999999999998875 333347777888
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 388 VDLLGRAGLVKQAYEYIQNML-MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..++.+.|++++|.++|++.. ..|| ..+|.++..++...|+.++|...|+++++...+-...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 889999999999999999884 4454 6899999999999999999999999998776553333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0051 Score=63.19 Aligned_cols=336 Identities=14% Similarity=0.083 Sum_probs=166.0
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHH--HHHHHH--hc
Q 007134 116 RGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNS--LVHMYA--AF 191 (616)
Q Consensus 116 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~y~--~~ 191 (616)
.-+.++|++++|+....+++..+ +-|...+..-+-++.+.+.++.|..+.+ +.+. ..+++. +=.+|+ +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 34445666667776666666543 2223334444445555666666653222 1111 011111 233333 56
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHH
Q 007134 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMVSLFSACAELGALALGRRAHTYV 270 (616)
Q Consensus 192 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~ 270 (616)
+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+.+.+-- ...-..++.+-..+ .+. .+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HH
Confidence 7777777777754444443444455566677778888888877766543211 11111122111110 000 11
Q ss_pred HHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcC--------CCC-----hh-----hHHHHHHHHHHcCCHHHHH
Q 007134 271 WKVGLSD--NVNVNNALLDFYSKCGIIIAAQRVFREMR--------KRN-----AV-----SWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 271 ~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~ 330 (616)
......| +-..+-.....+...|++.+|+++++... ..| .. .---|.-++-..|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111112 11122223345666788888888877661 111 11 1122344556689999999
Q ss_pred HHHHHHHhCCCcCCHH----HHHHHHHHHhcCCChHH--HHHHHHHhHHhh----------CCCCChhhHHHHHHHHHhc
Q 007134 331 ELFKEMEIGGFVPGEV----TFVGVLYACSHCGMVDE--GFSYFKRMKDEY----------GIMPKIEHFGCMVDLLGRA 394 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~~~~~ 394 (616)
.++...+... .+|.. .-|.|+ +...-.++-. ++..++...... .-.-.+.--++++.+| .
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 9999888764 34442 122222 2222222211 222222221100 0000011112333333 4
Q ss_pred CCHHHHHHHHHhCC-CCCcHHHHHHHHHHH-HHc-CCcHHHHHHHHHHHhcCCCC-CCchhhhhHHhHhcccchHHHHHH
Q 007134 395 GLVKQAYEYIQNML-MPPNAVIWRTLLGAC-TIH-GHSAIAEIARSTLLQLEPKH-SGDYVLLSNLYAYEQRWLNVQEVR 470 (616)
Q Consensus 395 g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~-~~~-g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~ 470 (616)
+.-+.+.++....+ ..|.. .+..++..+ ... .....+..++....+..|.+ ......++.+...+|+++.|.+++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45566777777665 34443 344444443 222 24677777777777777775 223345667778899999999999
Q ss_pred H
Q 007134 471 R 471 (616)
Q Consensus 471 ~ 471 (616)
.
T Consensus 400 ~ 400 (652)
T KOG2376|consen 400 S 400 (652)
T ss_pred H
Confidence 8
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-06 Score=54.20 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT 143 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 143 (616)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00012 Score=67.51 Aligned_cols=126 Identities=14% Similarity=0.049 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHc
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIH 426 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~ 426 (616)
..+-.++...|+-+....+...... .-+.|......++....+.|++.+|...|++.. -++|..+|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 4455566667777777776666543 223344455567888888888888888888773 344778888888888888
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 427 GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
|+++.|...+.+++++.|+++..+..|+..|.-.|+.+.|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888777543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00024 Score=74.94 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=119.7
Q ss_pred CCcHHHHHHHHH--HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHC-C--------CCCC
Q 007134 175 ESLVFVQNSLVH--MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE-G--------VEPD 243 (616)
Q Consensus 175 ~~~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~ 243 (616)
..|..+-.++++ .|..-|++|.|.+-.+-+. +...|..|.+.+++..+.+-|.-.+-.|... | -.|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 346667777765 5777899999988877664 4567999999999888888776665555321 0 1122
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHH
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-AVSWSTLVVGLAV 322 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~ 322 (616)
.+=..+.-....+|.+++|+.+|.+..+.. .|=..|-..|.+++|.++-+.-.+-. -.||..-..-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222222333467899999999998877643 34566778899999988866432211 2245555555556
Q ss_pred cCCHHHHHHHHHHH----------HhCC---------CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 323 NGFGKEALELFKEM----------EIGG---------FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 323 ~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
.++.+.|++.|++- .... -..|...|..-.......|+++.|+.+|...+.
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 67777777777642 2211 112344444445555678899998888887765
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=5e-06 Score=52.53 Aligned_cols=35 Identities=49% Similarity=0.645 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (616)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00022 Score=65.81 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=89.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 395 (616)
+-..+...|+.+....+........ .-|.......+....+.|++..|...|++... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 4445555566555555555533211 11222333355555666666666666666654 45556666666666666666
Q ss_pred CHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 396 LVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 396 ~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
++++|..-|.+. .+.| +....+.|...+.-.|+++.|+.++.......+.++..-..|.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666666544 2444 445666666666666777777776666665555555555566666666677666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0028 Score=62.95 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=115.0
Q ss_pred HHHhCCCccHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-
Q 007134 218 GFASNGKPNEALTLFREMASEGVEPDGY-TMVSLFSACAELG-ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI- 294 (616)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~- 294 (616)
.+...++.++|+.+..++++. .|+.. .|..--.++...+ .++++...++.+.+.. +.+..+|+...-++.+.|+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 344455666666666666653 33333 3333333334444 4566666666666554 3344455544444444554
Q ss_pred -HHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC---CC----hHH
Q 007134 295 -IIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC---GM----VDE 363 (616)
Q Consensus 295 -~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~~~ 363 (616)
.+++...++.+.+ +|..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |. .++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 2556666666543 46677877777777778888888888888876533 344555444444433 22 234
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHH
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA----GLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTI 425 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~ 425 (616)
...+...+.. -.+-+...|+-+...+... ++..+|.+++.+. ...| +......|+..+..
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5555555543 2334477777777777663 3445677777664 2344 45667777777764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00077 Score=74.54 Aligned_cols=238 Identities=9% Similarity=0.003 Sum_probs=136.4
Q ss_pred CCCCc-chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 007134 139 IKPDT-HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVIN 217 (616)
Q Consensus 139 ~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 217 (616)
..|+. ..+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~ 91 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLID 91 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhh
Confidence 34443 356667777777777777777777665542 22333344444466666665554433 2333
Q ss_pred HHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007134 218 GFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297 (616)
Q Consensus 218 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 297 (616)
......++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 344444443333344444442 2344567777777888888888888888888776 66777888888888887 8888
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH-HHHHHHHHhcCCChHHHHHHHHHhHHhhC
Q 007134 298 AQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT-FVGVLYACSHCGMVDEGFSYFKRMKDEYG 376 (616)
Q Consensus 298 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 376 (616)
|.+++.+.. ..|...+++.++.++|.++... .|+.+. |..++ +.+...-+
T Consensus 168 A~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~~~ 218 (906)
T PRK14720 168 AITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGHRE 218 (906)
T ss_pred HHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhhhc
Confidence 887776652 3366667778888888887764 333322 22222 22222112
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH
Q 007134 377 IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGAC 423 (616)
Q Consensus 377 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 423 (616)
...-+.++--+-.-|...++++++..+++.+ ...| |.....-++..|
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y 267 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY 267 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 2222334444445555666666666666655 2333 344444455444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0035 Score=58.12 Aligned_cols=247 Identities=13% Similarity=0.021 Sum_probs=128.1
Q ss_pred HHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH-H
Q 007134 188 YAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG-R 264 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a-~ 264 (616)
|.-.|.+..+...-..... .++..---|-++|...|++...+.- ... |-.|....+..+......-++.+.- .
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3444666665554443322 2333334455667767766544332 111 1133333333333333333333222 2
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC
Q 007134 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344 (616)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (616)
.+.+.+.......+......-...|.+.|+.++|.+.......-+....| ...+.+..+.+-|.+.+++|.+- .+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 33444444444444344444455677788888888777763322333222 33455666777777788887762 24
Q ss_pred HHHHHHHHHHHhc----CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHH
Q 007134 345 EVTFVGVLYACSH----CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRT 418 (616)
Q Consensus 345 ~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ 418 (616)
..|.+.|..++.+ .+.+.+|.-+|++|.+ ..+|+..+.+.+..++...|++++|..++++.- ...++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5566655555443 4456677777777765 355666666666666666677777766666552 2224455555
Q ss_pred HHHHHHHcCCc-HHHHHHHHHHHhcCCC
Q 007134 419 LLGACTIHGHS-AIAEIARSTLLQLEPK 445 (616)
Q Consensus 419 ll~a~~~~g~~-~~a~~~~~~~~~~~p~ 445 (616)
++..-...|.. +.-.+...++....|.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 55444444443 3334444555555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.8e-06 Score=51.90 Aligned_cols=34 Identities=32% Similarity=0.730 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 007134 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKP 141 (616)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 141 (616)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999887
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0016 Score=65.55 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=89.6
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHHHHHcCCcHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN-AVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd-~~~~~~ll~a~~~~g~~~~a 432 (616)
....|.+++|+..++.+.. ..+-|...+....+.+.+.++.++|.+.++++. ..|+ ...+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3456788888888888775 344456666677788888888888888887773 5665 56777778888888888888
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+.+++.....+|+++..|..|+.+|...|+..++...+.++.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888888888888888888888888888888877777766553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.2e-05 Score=66.02 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 444556666777778888887777766 2344 56677777777778888888888888888888887777888888888
Q ss_pred hcccchHHHHHHHHHhhC
Q 007134 459 YEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0029 Score=70.11 Aligned_cols=277 Identities=6% Similarity=-0.028 Sum_probs=168.9
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH-HHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHH
Q 007134 105 DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK-AISKLADVRMGEQTHSVAIRNGFESLVFVQNS 183 (616)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 183 (616)
..+...|-.|+..|...+++++|.++.+...+ ..|+...+-.... .+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 35677888999999899999999999986666 4566655433322 34444554444333 2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchH
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALA 261 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 261 (616)
+++......++....-+...|.+ .+..++-.+..+|-+.|+.++|..+++++++.. +-|....+.+...++.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 23333333333222333333322 233467778889999999999999999998876 55677888888888888 999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-C
Q 007134 262 LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIG-G 340 (616)
Q Consensus 262 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g 340 (616)
+|.+++.+++.. |...+++.++.+++.++..-++.-.. .-+.+.+.+... |
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d-------------~f~~i~~ki~~~~~ 218 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFD-------------FFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccch-------------HHHHHHHHHHhhhc
Confidence 999888877664 56677888888888887654443222 222333333322 2
Q ss_pred CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhCCCCCcHHHHHHH
Q 007134 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA-GLVKQAYEYIQNMLMPPNAVIWRTL 419 (616)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~pd~~~~~~l 419 (616)
..--..++-.+-..|....+++++..+++.+.+ --+.|.....-++..|... ++.....+.++-.+
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~----------- 285 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSD----------- 285 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHHHHccCcchHHHHHHHhc-----------
Confidence 222234555566677788889999999998875 2223445555566555411 11111111111111
Q ss_pred HHHHHHc-CCcHHHHHHHHHHHhcCCCC
Q 007134 420 LGACTIH-GHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 420 l~a~~~~-g~~~~a~~~~~~~~~~~p~~ 446 (616)
.... .++..++.-|++.+..++.+
T Consensus 286 ---l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 286 ---IGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred ---cccCCccHHHHHHHHHHHeeecCCC
Confidence 1222 34577788888887777664
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.1e-05 Score=50.53 Aligned_cols=34 Identities=38% Similarity=0.769 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC
Q 007134 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEP 242 (616)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 242 (616)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999988887
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00029 Score=71.25 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC
Q 007134 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG 359 (616)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 359 (616)
....+|+..+...++++.|.++|+++.+.++..+-.++..+...++..+|++++++..... +-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3444566677778889999999999988877777778888888889999999999988642 224444555556678899
Q ss_pred ChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 007134 360 MVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP 411 (616)
Q Consensus 360 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 411 (616)
+.+.|..+.+++.+ ..|+ ..+|..|...|.+.|++++|+..++.+|+.|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999998875 3454 7799999999999999999999999988554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0017 Score=71.16 Aligned_cols=155 Identities=12% Similarity=0.147 Sum_probs=114.1
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG-YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL 286 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 286 (616)
++..+-.|.....+.|.+++|..+++...+. .||. ........++.+.+++++|....+...... +.+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 4677888888888899999999999988874 5654 455667778888888888888888888765 55667777788
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 287 DFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
.++.+.|++++|..+|++...+ +..+|..+..++...|+.++|...|++..+. ..|....|+.++ +++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~ 234 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNA 234 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHH
Confidence 8888888888888888888744 3567777888888888888888888888764 234445555544 33344
Q ss_pred HHHHHHHhH
Q 007134 364 GFSYFKRMK 372 (616)
Q Consensus 364 a~~~~~~m~ 372 (616)
-...++.+.
T Consensus 235 ~~~~~~~~~ 243 (694)
T PRK15179 235 DLAALRRLG 243 (694)
T ss_pred HHHHHHHcC
Confidence 444555553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0017 Score=59.59 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=114.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC
Q 007134 282 NNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL---VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358 (616)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (616)
+..+.-+...+|+.+.|...++.+..+=+.++... ..-+-..|++++|+++++...+.. +-|.+++.-=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33444445566777777777776553322222111 112334688999999999998875 44556666555555557
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHc---CCcHHHH
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIH---GHSAIAE 433 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~---g~~~~a~ 433 (616)
|.--+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++- +.| +...+..+...+-.. .+.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888877 667889999999999999999999999999984 667 556666666655333 3688899
Q ss_pred HHHHHHHhcCCCCC
Q 007134 434 IARSTLLQLEPKHS 447 (616)
Q Consensus 434 ~~~~~~~~~~p~~~ 447 (616)
..+.+++++.|.+.
T Consensus 212 kyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 212 KYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHhChHhH
Confidence 99999999998543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00028 Score=71.40 Aligned_cols=112 Identities=11% Similarity=0.079 Sum_probs=56.2
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007134 92 PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIR 171 (616)
Q Consensus 92 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 171 (616)
+++.|+.+|+++.+.++..+..|+..+...++..+|++++++.++.. +-|...+..-.+.|.+.++.+.|.++.+++++
T Consensus 184 ~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ 262 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVE 262 (395)
T ss_pred cHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55555555555555444444455555555555555555555555431 11222333333444555555555555555555
Q ss_pred hCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 172 NGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 172 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
.. +.+-.+|..|..+|.+.|+++.|+..++.++
T Consensus 263 ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 263 LS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 42 2333355555555555555555555555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.049 Score=55.67 Aligned_cols=394 Identities=13% Similarity=0.124 Sum_probs=226.9
Q ss_pred CCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007134 73 LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--P-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149 (616)
Q Consensus 73 ~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 149 (616)
|.|...|+.||.-+... ..++++.+++.+.. | ....|..-|..-....+++....+|.+.+..-+ +...|..-
T Consensus 17 P~di~sw~~lire~qt~--~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ--PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC--CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence 67899999999877665 59999999998865 3 567899999999999999999999999987533 33444444
Q ss_pred HHHHHc-CCCcHHHH----HHHHHH-HHhCCCCc-HHHHHHHHHH---------HHhcCCHHHHHHHHhhcCC-C-----
Q 007134 150 LKAISK-LADVRMGE----QTHSVA-IRNGFESL-VFVQNSLVHM---------YAAFGHVKDACKVFELMSE-R----- 207 (616)
Q Consensus 150 l~~~~~-~~~~~~a~----~~~~~~-~~~g~~~~-~~~~~~Li~~---------y~~~g~~~~A~~~f~~~~~-~----- 207 (616)
|.-.-+ .++....+ +.|+.. .+.|.++- -.+|+..++. |....+++..++++.++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 443322 23333322 333333 34454332 2345555543 4455577888899988764 1
Q ss_pred ----ChhHHHHHHHHH-------HhCCCccHHHHHHHHHHH--CCCCCCHHH---------------HHHHH--------
Q 007134 208 ----DLVAWNSVINGF-------ASNGKPNEALTLFREMAS--EGVEPDGYT---------------MVSLF-------- 251 (616)
Q Consensus 208 ----~~~~~~~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~ll-------- 251 (616)
|-..|..=|+.. -+...+..|.+++++... .|+.-+..+ |-..|
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 111221111110 011223334444433321 111100000 11111
Q ss_pred -----------------------------------------HHHHhcCc-------hHHHHHHHHHHHHhCCCCchhHHH
Q 007134 252 -----------------------------------------SACAELGA-------LALGRRAHTYVWKVGLSDNVNVNN 283 (616)
Q Consensus 252 -----------------------------------------~a~~~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~ 283 (616)
..+...|+ -+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111121 222223333322221112222222
Q ss_pred HHHHHHH---hcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHH
Q 007134 284 ALLDFYS---KCGIIIAAQRVFREMRK----RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYAC 355 (616)
Q Consensus 284 ~li~~y~---~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 355 (616)
++.+.=- +....+.....+++... .-..+|-..|..-.+..-.+.|..+|.+..+.+..+ +....++++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 2221100 00112223333333321 123456667777777777889999999999988777 556677777655
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC---CCCc--HHHHHHHHHHHHHcCCcH
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML---MPPN--AVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~pd--~~~~~~ll~a~~~~g~~~ 430 (616)
+ .++.+-|.++|+.=.+.+|-. ..--...++-+...++-..|..+|++.. ..|| ..+|..+|.--..-|++.
T Consensus 413 c-skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred h-cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 5 688899999999877755433 3444677888889999999999998873 3444 379999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 431 IAEIARSTLLQLEPKH----SGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
.+..+-++....-|.+ ...-..+.+.|.-.+.+..-..-++.|
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9999988876555521 122345666676666665544444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.006 Score=61.49 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=50.8
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhCCCccHHHHH
Q 007134 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RD-LVAWNSVINGFASNGKPNEALTL 231 (616)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~ 231 (616)
..|.++.|+..+..+++. .+.|++......+.+.+.++.++|.+.|+++.. |+ ...+-.+..+|.+.|++.+|+.+
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~ 396 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI 396 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH
Confidence 345555555555555444 234444455555555555555555555555433 22 23344444555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 007134 232 FREMASEGVEPDGYTMVSLFSACAELGALALG 263 (616)
Q Consensus 232 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 263 (616)
++..... .+-|...|..+..+|...|+..++
T Consensus 397 L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 397 LNRYLFN-DPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHhhc-CCCCchHHHHHHHHHHHhCchHHH
Confidence 5554433 233444444444444444444333
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00057 Score=58.82 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=86.3
Q ss_pred HHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 007134 332 LFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LM 409 (616)
Q Consensus 332 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 409 (616)
.+++... ..|+. .....+...+...|++++|...|+.+... .+.+...|..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455544 33433 44555666777889999999999888762 2345778888888999999999999988876 34
Q ss_pred CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 410 PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 410 ~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.| +..++..+...+...|+++.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 5678888888999999999999999999999998654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.4e-05 Score=47.77 Aligned_cols=31 Identities=32% Similarity=0.591 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGI 139 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 139 (616)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788999999999999999999999888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.7e-05 Score=46.43 Aligned_cols=31 Identities=39% Similarity=0.601 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
++||+|+.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00036 Score=55.07 Aligned_cols=92 Identities=21% Similarity=0.214 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
+..+...+.+.|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777888888888888776 2344 44677777888888888999999998888888887777888888888889
Q ss_pred cchHHHHHHHHHhh
Q 007134 462 RWLNVQEVRRTMVK 475 (616)
Q Consensus 462 ~~~~a~~~~~~m~~ 475 (616)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99988888877654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0035 Score=54.73 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=46.7
Q ss_pred cCCHHHHHHHHHHHHhCCCcCCH----HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh--hhHHHHHHHHHhcCC
Q 007134 323 NGFGKEALELFKEMEIGGFVPGE----VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI--EHFGCMVDLLGRAGL 396 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~ 396 (616)
.++...+.+.++.+.... |+. .....+...+...|++++|...|+.+... ...|.. .....|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 455555555555555432 111 11122223444455555555555555442 111111 122233444445555
Q ss_pred HHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 007134 397 VKQAYEYIQNMLMPP-NAVIWRTLLGACTIHGHSAIAEIARST 438 (616)
Q Consensus 397 ~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~ 438 (616)
+++|+..++.....+ ....+..+...+...|+.++|...|++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555554432111 223333344444444444444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.11 Score=53.12 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007134 225 PNEALTLFREMASEGVEPDGYTMVSLFSACAELG---ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301 (616)
Q Consensus 225 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (616)
.+++..+++.....-..-+..+|..+..-=-..- ..+....++..+.+.-...-..+|-.+++.-.+..-++.|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566655544333334444443332211111 2445555555555443222234555666766777778888888
Q ss_pred HHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 302 FREMRKR-----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 302 f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
|.+..+. ++...++++.-|+. ++.+-|.++|+--.+. -+|. .-....+.-+.+.++-..+..+|++....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s- 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS- 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-
Confidence 8777642 56667777776664 5667788888754432 1222 23345566667778888888888888775
Q ss_pred CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 376 GIMPK--IEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 376 ~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
++.|+ ...|..+++-=..-|++..+.++-+++
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 66665 577888888888888888887777665
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0012 Score=57.59 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcH----HHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNA----VIWRTLL 420 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~----~~~~~ll 420 (616)
.|..++.+. ..++...+...++.+.+.++-.+- ....-.+...+...|++++|...|+... ..||. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 478889999999999886432211 2334456678899999999999998884 22443 3555677
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
..+...|++++|+..++... -.+-.+..+..++++|.+.|++++|...++..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88899999999999997632 23334556778999999999999999998753
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=54.78 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc-cchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ-RWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 475 (616)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788888889999999999999999999999998889999999999999 79999998887754
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0041 Score=61.11 Aligned_cols=265 Identities=12% Similarity=-0.009 Sum_probs=158.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCc
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMVSLFSACAELGA 259 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 259 (616)
..+.+.+..++.+|+..+....+ .++.-|..-...+...|++++|+--.+.-++. +|. ..+....-..+...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 33455666666777766655443 23444555566666666676666555444332 221 1233334444444444
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHH-HHHHHHcCCHHHHHHHH
Q 007134 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-----RNAVSWSTL-VVGLAVNGFGKEALELF 333 (616)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~l-i~~~~~~g~~~~A~~l~ 333 (616)
..+|.+.+.. ...+ ....|+..++.... |--.+|..+ ..++...|++++|...-
T Consensus 133 ~i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 4444444330 0000 01111222222211 112333333 34566678888887776
Q ss_pred HHHHhCCCcCCHHHHHHHHH--HHhcCCChHHHHHHHHHhHHhhCCCCChhh-------------HHHHHHHHHhcCCHH
Q 007134 334 KEMEIGGFVPGEVTFVGVLY--ACSHCGMVDEGFSYFKRMKDEYGIMPKIEH-------------FGCMVDLLGRAGLVK 398 (616)
Q Consensus 334 ~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~~~li~~~~~~g~~~ 398 (616)
....+.. ++ ..+..+++ ++...++.+.|...|++.. .+.|+-.. +..=..-..+.|++.
T Consensus 193 ~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 6665532 11 12222222 3345677788888887765 33444221 122234457899999
Q ss_pred HHHHHHHhC-C-----CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHH
Q 007134 399 QAYEYIQNM-L-----MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRT 472 (616)
Q Consensus 399 ~A~~~~~~m-~-----~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 472 (616)
+|.+.+.+. . .+|++..|.....+..+.|+.++|+..-+++++++|....+|..-+++|...++|++|.+-+++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999776 3 4455667777777889999999999999999999999888899999999999999999999988
Q ss_pred HhhC
Q 007134 473 MVKE 476 (616)
Q Consensus 473 m~~~ 476 (616)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 8664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00065 Score=68.96 Aligned_cols=98 Identities=14% Similarity=-0.022 Sum_probs=55.6
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~ 430 (616)
..+...|++++|...|+++.+ .-+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 334455666666666666654 12223455555566666666666666666555 2344 3455556666666666666
Q ss_pred HHHHHHHHHHhcCCCCCCchhh
Q 007134 431 IAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
+|+..++++++++|+++.....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHH
Confidence 6666666666666665544333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.1 Score=51.75 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
..|.-+...|+...|.++-.+..-+|-.-|-..+.+|+..++|++-.++... .- ..+-|-..+.+|.+.|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHH
Confidence 3344556677777888887777777777788888888888888766665432 11 22566677777777788777
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
|..+...+. +..-+.+|.++|++.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777766531 245567777788877776665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=6.4e-05 Score=58.67 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHhCC-CCC---cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHH
Q 007134 395 GLVKQAYEYIQNML-MPP---NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470 (616)
Q Consensus 395 g~~~~A~~~~~~m~-~~p---d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 470 (616)
|++++|+.+++++- ..| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555554441 112 333444455555666666666666655 4445544444445566666666666666665
Q ss_pred HH
Q 007134 471 RT 472 (616)
Q Consensus 471 ~~ 472 (616)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 53
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.037 Score=51.19 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=53.2
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (616)
.|++++|+++|+..++.+ +.|.+++..-+...-..|.--+|.+-+....+. +..|...|.-+.+.|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 344455555555544443 334444444444443444433444333333332 344555555555555555666655555
Q ss_pred HHhcC--CC-ChhhHHHHHHHHHHcC---CHHHHHHHHHHHHh
Q 007134 302 FREMR--KR-NAVSWSTLVVGLAVNG---FGKEALELFKEMEI 338 (616)
Q Consensus 302 f~~m~--~~-~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~ 338 (616)
++++. .| +...+..+...+.-.| +.+-|.++|.+..+
T Consensus 177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55543 22 3333333333332222 34556666666655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00036 Score=65.75 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=58.6
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~ 431 (616)
..+.+++.+|...|....+ +.|+ .+-|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4556777777777777663 3333 444555566677777777776666554 35554 3577777777777777777
Q ss_pred HHHHHHHHHhcCCCCC
Q 007134 432 AEIARSTLLQLEPKHS 447 (616)
Q Consensus 432 a~~~~~~~~~~~p~~~ 447 (616)
|++.|+++++++|++.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 7777777777777655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.039 Score=51.40 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHHhcCCCC-hhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 289 YSKCGIIIAAQRVFREMRKRN-AVSWSTLVVGLAV----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
..|..+.+-|.+.++.|.+-| -.+.+-|..++.+ .+...+|.-+|++|-+. ..|+..+.+....++...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 344445555555555555442 2333334444433 23456666666666543 35566666666666666666666
Q ss_pred HHHHHHHhHH
Q 007134 364 GFSYFKRMKD 373 (616)
Q Consensus 364 a~~~~~~m~~ 373 (616)
|..+++....
T Consensus 226 Ae~lL~eaL~ 235 (299)
T KOG3081|consen 226 AESLLEEALD 235 (299)
T ss_pred HHHHHHHHHh
Confidence 6666666655
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0019 Score=53.87 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=48.3
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHH
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACT 424 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~ 424 (616)
+...+...|++++|...|+.+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+. ..|+ ..++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33344445555555555555543211111 12233445555555555555555555441 1222 334555555566
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
..|+.+.|...++++++..|+++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCCh
Confidence 66666666666666666666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.017 Score=59.86 Aligned_cols=229 Identities=14% Similarity=0.137 Sum_probs=123.9
Q ss_pred HHHHHHHHHcCCCcHHHHHH--HHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC
Q 007134 146 YPFLLKAISKLADVRMGEQT--HSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG 223 (616)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 223 (616)
++..=++|.+.+++..-+-+ ++.+.++|-.|+... +.+.++-.|.+.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444556666655443322 345566676676653 45567778899999888865 45
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007134 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (616)
.-..|+++|..|+-- -...-+...|..++-+.+..+-.+. ..++.--.+-..++...|+.++|..+
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i-- 725 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI-- 725 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh--
Confidence 566677776666421 1122233344444444333322111 11111112344555667777776654
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhh
Q 007134 304 EMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEH 383 (616)
Q Consensus 304 ~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 383 (616)
+..+|-.+-++++-+++... +..+...+...+-+...+..|-++|..|-.
T Consensus 726 ----------------~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------- 775 (1081)
T KOG1538|consen 726 ----------------CGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------- 775 (1081)
T ss_pred ----------------hhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc----------
Confidence 23455555555555554332 333444444445556667777777777743
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHH-HHHH----------HHHHHHHcCCcHHHHHHHHHH
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML-MPPNAV-IWRT----------LLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~-~~~~----------ll~a~~~~g~~~~a~~~~~~~ 439 (616)
...++++....+++.+|..+-++.| +.||+. -|.. .-.|+.+.|+-.+|.++++++
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 2356777778888888888887775 445542 1111 113445555556666666555
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0012 Score=55.15 Aligned_cols=96 Identities=19% Similarity=0.061 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CCchhhh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH---SGDYVLL 453 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 453 (616)
.++..++..+.+.|++++|.+.|+++. ..|+ ...+..+..++...|+++.|...++.++...|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356677788999999999999998873 3343 3466778889999999999999999999988885 4457789
Q ss_pred hHHhHhcccchHHHHHHHHHhhCC
Q 007134 454 SNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 454 ~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
+.++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999987653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=57.20 Aligned_cols=90 Identities=8% Similarity=-0.014 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
...--+...|++++|..+|+-+- ..| |..-|..|..+|...+++++|...+..+..+++++|..+...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44445668999999999998873 334 6667889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh
Q 007134 464 LNVQEVRRTMVK 475 (616)
Q Consensus 464 ~~a~~~~~~m~~ 475 (616)
+.|.+.|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.002 Score=65.40 Aligned_cols=102 Identities=9% Similarity=-0.055 Sum_probs=80.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 395 (616)
....+...|++++|+++|++.++.. .-+...|..+..++.+.|++++|...++.+... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456678899999999999999853 234567778888999999999999999999852 2334778889999999999
Q ss_pred CHHHHHHHHHhC-CCCCcHHHHHHHH
Q 007134 396 LVKQAYEYIQNM-LMPPNAVIWRTLL 420 (616)
Q Consensus 396 ~~~~A~~~~~~m-~~~pd~~~~~~ll 420 (616)
++++|...|++. ...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999887 3666544444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0054 Score=55.29 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=77.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC--HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHH
Q 007134 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG--EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGC 386 (616)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 386 (616)
....+..+...+...|++++|+..|++.......++ ...+..+...+.+.|++++|...+++..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344566666677777777777777777765432222 245566666677777777777777766642 1223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 387 MVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
+...|...|+...+..-++.. ...+++|.+.++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555666666554443322211 112577888888888888874 5555555554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00033 Score=51.52 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=34.6
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+...|++++|+..++++++..|+++..+..++.++...|++++|...++.+.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0071 Score=64.26 Aligned_cols=140 Identities=12% Similarity=0.009 Sum_probs=74.0
Q ss_pred CCChhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcC--------CChHHHHHHHHHhH
Q 007134 307 KRNAVSWSTLVVGLAVNG-----FGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHC--------GMVDEGFSYFKRMK 372 (616)
Q Consensus 307 ~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 372 (616)
..|...|...+.+..... ...+|..+|++..+ ..|+. ..+..+..++... .++..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 346677777777654422 26688888888877 45654 3333322222111 11222233332222
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.......+...|.++.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 11012223345555554555556666666666555 25556666666666666666666666666666666666553
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0028 Score=49.75 Aligned_cols=62 Identities=23% Similarity=0.173 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
.+..+...+...|++++|.+.+++. ...| +..++..+...+...|+.+.|...++++++..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3344444444555555555555443 1222 224555555555566666666666666555544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0019 Score=58.22 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=54.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
..+..+...+.+.|++++|...|++.- ..|+ ...+..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345555566666677777766665541 1221 35667777777888888888888888888888777777777777
Q ss_pred hHhccc
Q 007134 457 YAYEQR 462 (616)
Q Consensus 457 y~~~g~ 462 (616)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 776665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.03 Score=55.03 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC-CChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHH
Q 007134 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC-GMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLL 391 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~ 391 (616)
+..|...|++..|-+.+.+ +...|... |++++|.+.|++..+-+..... ...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 4445555555555444443 33345555 6777777777776554332222 23455666778
Q ss_pred HhcCCHHHHHHHHHhCC--------CCCcHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 392 GRAGLVKQAYEYIQNML--------MPPNAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m~--------~~pd~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.+.|++++|.++|++.. .+.+.. .+...+-.+...||...|...+++....+|.-.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 88888888888887762 111221 22233335567788888999998888888864443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00098 Score=48.93 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=50.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 387 MVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456688899999999999887 3556 567899999999999999999999999999999864
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.48 Score=51.69 Aligned_cols=210 Identities=12% Similarity=0.070 Sum_probs=110.2
Q ss_pred CHHHHHHHHhhCCC--CChhHHHHHHHHH--HhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHH
Q 007134 92 PMSYAHNIFSHVQD--PNIFTWNTMIRGY--AESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167 (616)
Q Consensus 92 ~~~~A~~~f~~m~~--~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 167 (616)
++..|..-.++... ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|-..+..+++..+|+
T Consensus 24 qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46666666655433 333 344455544 3567777777777666544322 55666666666777777777777777
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHH----HHHHHHhhcCCCChhHHHHHHHHHHhC-CCccH---------HHHHHH
Q 007134 168 VAIRNGFESLVFVQNSLVHMYAAFGHVK----DACKVFELMSERDLVAWNSVINGFASN-GKPNE---------ALTLFR 233 (616)
Q Consensus 168 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~---------A~~~~~ 233 (616)
++... .|+......+..+|.+.+++. .|.+++...+++--.-|+.+ +.+.+. ...++ |.+.++
T Consensus 102 ~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHH
Confidence 77654 344556666666777766654 35666666555444445443 333322 22222 334444
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHH-HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007134 234 EMASEGVEP-DGYTMVSLFSACAELGALALGRRAHTY-VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 234 ~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
.+.+.+-+- +..-...-+..+...+..++|..++.. ....-...+...-+--++.+.+++++.+-.++-.++.
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 444333111 111111122333455666666666632 2222223344444555666666666666555554443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.49 Score=51.67 Aligned_cols=214 Identities=14% Similarity=0.072 Sum_probs=138.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHH--hCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHH
Q 007134 55 SKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV--SLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVE 129 (616)
Q Consensus 55 ~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~--~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 129 (616)
....+.+-...+.+.. |. ..+...+.++. +.| +.++|..+++.... .|..|...+-..|...++.++|+.
T Consensus 24 qfkkal~~~~kllkk~--Pn--~~~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKH--PN--ALYAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHC--CC--cHHHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3455555555555543 22 23445555555 677 89999988886543 377889999999999999999999
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCC----------HHHHHH
Q 007134 130 LYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGH----------VKDACK 199 (616)
Q Consensus 130 l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~----------~~~A~~ 199 (616)
+|++..+ ..|+..-...+..++.+.+++.+-.++--++-+. ++.+.+.+=++++.+...-. +.-|.+
T Consensus 99 ~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999877 4577777788888999888887655554444443 34455554455555544321 234666
Q ss_pred HHhhcCCCC--hhH---HHHHHHHHHhCCCccHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Q 007134 200 VFELMSERD--LVA---WNSVINGFASNGKPNEALTLFR-EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV 273 (616)
Q Consensus 200 ~f~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 273 (616)
.++.+.+.+ ..+ .-.-...+-..|.+++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666665543 111 1111233456788999999984 3333323334444455667777888888888888888887
Q ss_pred CCC
Q 007134 274 GLS 276 (616)
Q Consensus 274 g~~ 276 (616)
|..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 643
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0021 Score=57.70 Aligned_cols=93 Identities=9% Similarity=-0.115 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
...|..+...+...|++++|+..|++.. ..|+ ..+|..+...+...|++++|+..+++++.+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5556677777888899999988887762 3232 3578888899999999999999999999999988888888888
Q ss_pred HhH-------hcccchHHHHHHHHH
Q 007134 456 LYA-------YEQRWLNVQEVRRTM 473 (616)
Q Consensus 456 ~y~-------~~g~~~~a~~~~~~m 473 (616)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 777887666666543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.019 Score=51.54 Aligned_cols=81 Identities=12% Similarity=0.032 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC--HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG--EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCM 387 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 387 (616)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++..... .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34556666667777778888887777765422221 235666666777777777777777776542 11223444445
Q ss_pred HHHHH
Q 007134 388 VDLLG 392 (616)
Q Consensus 388 i~~~~ 392 (616)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44454
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.01 Score=58.11 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGG-FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
.+|-.++....+.+..+.|..+|.+..+.+ ...+.....+++. +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357777888888888888889998887543 2233333333332 23357777799999999884 4566788999999
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCcH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 390 LLGRAGLVKQAYEYIQNML-MPPNA----VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~-~~pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
.+.+.|+.+.|..+|++.- .-|.. .+|...+.--.+.|+++....+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999998873 22332 599999999999999999999999998887773
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.023 Score=55.78 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHhC----CCcCC--HHHHHHHHHHHhcC
Q 007134 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN-GFGKEALELFKEMEIG----GFVPG--EVTFVGVLYACSHC 358 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~ 358 (616)
++.|.+.|+...|-+.+.. +...|-.. |++++|++.|++..+. | .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 3445555555555444333 23444444 5566666655554331 2 111 13344455556666
Q ss_pred CChHHHHHHHHHhHHhhCCC----CChh-hHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 359 GMVDEGFSYFKRMKDEYGIM----PKIE-HFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
|++++|.++|+++....--. .++. .+-..+-.+...|+...|.+.+++.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666655421101 1111 1222333444556666666666554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.015 Score=52.73 Aligned_cols=105 Identities=20% Similarity=0.271 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHH
Q 007134 241 EPDGYTMVSLFSACAEL-----GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWST 315 (616)
Q Consensus 241 ~p~~~t~~~ll~a~~~~-----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~ 315 (616)
..|..+|..++..+.+. |..+-....+..|.+.|+.-|..+|+.|++.+=| |.+- -..+|+ +
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ-----------~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ-----------A 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH-----------H
Confidence 44666777777666543 5666667777888889999999999999988765 3221 111111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
+..-| ..+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 23557789999999999999999999999999877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0049 Score=58.62 Aligned_cols=101 Identities=16% Similarity=0.072 Sum_probs=85.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCCCCCchhh
Q 007134 378 MPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHG---HSAIAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 378 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
+-|...|--|...|.+.|+++.|..-|.+.. +.| |...+..+..++.... ...++..+++++++++|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 3459999999999999999999999998773 444 5677777777664333 4678999999999999999999999
Q ss_pred hhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 453 LSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 453 l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
|+..+...|++.+|...++.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0032 Score=59.52 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=74.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcC
Q 007134 318 VGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAG 395 (616)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 395 (616)
.-+.+.+++++|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+... .+.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 3466788899999999998884 44 55777778888999999999888777765 45565 778888999999999
Q ss_pred CHHHHHHHHHhC-CCCCcHHHHHH
Q 007134 396 LVKQAYEYIQNM-LMPPNAVIWRT 418 (616)
Q Consensus 396 ~~~~A~~~~~~m-~~~pd~~~~~~ 418 (616)
++++|.+.|++. .+.|+-.+|..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999988776 47886655543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=50.85 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 007134 323 NGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 400 (616)
.|+++.|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45556666666665553211 12223333455555555555555555541 11121 12222334455555555555
Q ss_pred HHHHH
Q 007134 401 YEYIQ 405 (616)
Q Consensus 401 ~~~~~ 405 (616)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0075 Score=48.34 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHHHcCCC--------cHHHHHHHHHHHHhCCCCcHHHH
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHVSGI-KPDTHTYPFLLKAISKLAD--------VRMGEQTHSVAIRNGFESLVFVQ 181 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~ 181 (616)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-..+.+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666677999999999999999999 9999999999999876532 33567888999999999999999
Q ss_pred HHHHHHHHh
Q 007134 182 NSLVHMYAA 190 (616)
Q Consensus 182 ~~Li~~y~~ 190 (616)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0012 Score=49.83 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=48.6
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
...+.+.++++.|..+++++++++|+++..+...+.+|.+.|++++|.+.++...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346778888999999999999999998888888999999999999999988888654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0066 Score=61.91 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=76.0
Q ss_pred CCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHH
Q 007134 139 IKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRN--GFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE----RDLVAW 212 (616)
Q Consensus 139 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~ 212 (616)
.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..++..=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666677776666777666666555543 1222234445777777777777777777665443 566777
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007134 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257 (616)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (616)
|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777776666666666666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0049 Score=60.46 Aligned_cols=129 Identities=13% Similarity=-0.007 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHH---hHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCcH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKR---MKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-------LM-PPNA 413 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~pd~ 413 (616)
..|..|.+.|.-.|+++.|+..++. +.+++|-... ...+..+...+.-.|+++.|.+.++.. +- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455666666677888888876654 2233443322 456777888888889999998888654 21 1244
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHh----cCC--CCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQ----LEP--KHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p--~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
.+..+|.++|....++++|+..+.+-+. ++- ....++..|+++|...|..+.|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5677888888888899999988876532 221 124567889999999999988887765543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.014 Score=57.04 Aligned_cols=128 Identities=11% Similarity=0.118 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH-HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA-ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHM 187 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 187 (616)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888888888888887542 2223334333333 23356777799999998877 57788888889999
Q ss_pred HHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 007134 188 YAAFGHVKDACKVFELMSER------DLVAWNSVINGFASNGKPNEALTLFREMASE 238 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (616)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987652 2347888888777888888888888777663
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.067 Score=47.04 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=102.3
Q ss_pred CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHhCC------CCCcH
Q 007134 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI-MPKIEHFGCMVDLLGRAGLVKQAYEYIQNML------MPPNA 413 (616)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~pd~ 413 (616)
+-|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...++.+. -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 457777777788889999999999999999877 54 4557777788888888999999999888773 2344
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+...+..++...|....|+..|+.++.--|+ +..-...+..+.++|+.+++..-+..+.+
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3445667889999999999999999988887 55666677888999999888766555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.46 Score=47.16 Aligned_cols=111 Identities=8% Similarity=0.071 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI 425 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~ 425 (616)
.+.+..+.-|...|....|.++-... .+ |+...|-..+.+|+..+++++-.++... +..++-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555666777889988887765554 44 8999999999999999999998887654 3345788899999999
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
.|+..+|.....++ .+..-..+|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999888772 2255788899999999998875443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0019 Score=48.02 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCC
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHG-HSAIAEIARSTLLQLEP 444 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p 444 (616)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3567788888899999999999999776 3556 5678999999999999 79999999999999887
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00066 Score=50.38 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=40.9
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...|++++|+..++++++.+|++......++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567888888888888888888888888888888888888888888876654
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.79 Score=49.13 Aligned_cols=116 Identities=9% Similarity=0.011 Sum_probs=88.6
Q ss_pred CCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHH
Q 007134 340 GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTL 419 (616)
Q Consensus 340 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~l 419 (616)
|......|.+--+.-+...|...+|.++-.+.+- ||-..|---+.+++..+++++-+++-+.+. .+.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 3333444555556667778999999888776643 888888888999999999999988888764 24556777
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHH
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
..+|.+.|+.++|...+-+.-. +.-...+|.+.|++.+|.+.--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 8899999999999998776422 2257889999999999987754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.61 Score=47.04 Aligned_cols=405 Identities=11% Similarity=0.054 Sum_probs=207.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCCC------hHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCC-hhHHHHHHHHH--HhcCCc
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNN------PDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPN-IFTWNTMIRGY--AESANP 124 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~------~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~-~~~~~~li~~~--~~~g~~ 124 (616)
++..++..++..+.+.-- ++ .+..+.++++|-..+ .+.-........+.. -..|-.+..++ -+.+.+
T Consensus 20 ~~~~esEkifskI~~e~~--~~~f~lkeEvl~grilnAffl~n--ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKE--SSPFLLKEEVLGGRILNAFFLNN--LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred hhhhHHHHHHHHHHHHhh--cchHHHHHHHHhhHHHHHHHHhh--HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 356788889999876542 23 345678888887654 665555544433211 22344444443 356788
Q ss_pred hHHHHHHHHHHHC--CCCCC-----------cchH-HHHHHHHHcCCCcHHHHHHHHHHHHhCC----CCcHHHHHHHHH
Q 007134 125 LLAVELYSKMHVS--GIKPD-----------THTY-PFLLKAISKLADVRMGEQTHSVAIRNGF----ESLVFVQNSLVH 186 (616)
Q Consensus 125 ~~A~~l~~~m~~~--g~~pd-----------~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~Li~ 186 (616)
.+|++.+..-... +.+|. .+.+ +..+..+...|.+.+|+.+++.++..=+ .-+..+||.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8898888776654 32221 1111 2345567788999999988888876533 367788888777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC-------------------------------CccHHHHHHHHH
Q 007134 187 MYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNG-------------------------------KPNEALTLFREM 235 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-------------------------------~~~~A~~~~~~m 235 (616)
++++.=-++--. .+...=..-|--||..|.+.= +..--++++...
T Consensus 176 mlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 176 MLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHhHHHHHHHHH----hcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 776542211111 111111112333333333211 111112222222
Q ss_pred HHCCCCCCHHHH-HHHHHHHHhcCchHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CC
Q 007134 236 ASEGVEPDGYTM-VSLFSACAELGALALGRRAHTYVWKVGLS----DNVNVNNALLDFYSKCGIIIAAQRVFREMR--KR 308 (616)
Q Consensus 236 ~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~ 308 (616)
...=+.|+.... ..+...+.+ +.+++..+-+.+....+. .=+..+..++....+.++...|.+.+.-+. +|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 222244443221 222222222 444444444433332111 113344455555566666666666655443 22
Q ss_pred Chh-------hHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCcCCHHH-HHHHHH---HHhcCCC-hHHHHHHHHHhH
Q 007134 309 NAV-------SWSTLVVGLAV----NGFGKEALELFKEMEIGGFVPGEVT-FVGVLY---ACSHCGM-VDEGFSYFKRMK 372 (616)
Q Consensus 309 ~~~-------~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~---a~~~~g~-~~~a~~~~~~m~ 372 (616)
+.. +-.++-...+. .-+...=+.+|.+.....+ |..- ...++. -+-+.|. -++|..+++.+.
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 221 11112222221 1122233444444443322 2111 111111 1223444 777888888776
Q ss_pred HhhCCCC-ChhhHHHHH----HHHHhc---C---CHHHHHHHHHhCCCCC----cHHHHHHHHHH--HHHcCCcHHHHHH
Q 007134 373 DEYGIMP-KIEHFGCMV----DLLGRA---G---LVKQAYEYIQNMLMPP----NAVIWRTLLGA--CTIHGHSAIAEIA 435 (616)
Q Consensus 373 ~~~~~~p-~~~~~~~li----~~~~~~---g---~~~~A~~~~~~m~~~p----d~~~~~~ll~a--~~~~g~~~~a~~~ 435 (616)
+ +.| |...-|.+. ..|.++ . ++-.-.+++++.++.| +...-|.|..| +..+|++.++.-.
T Consensus 408 ~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 408 Q---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred H---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4 222 233222221 112111 1 1222244455566555 34455666554 4789999999999
Q ss_pred HHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
-.-+.+..| ++.+|..++-++....+++||..++..+.
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 999999999 69999999999999999999999998663
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.019 Score=46.17 Aligned_cols=81 Identities=17% Similarity=0.085 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHhCCCCchhH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGV-EPDGYTMVSLFSACAELG--------ALALGRRAHTYVWKVGLSDNVNV 281 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 281 (616)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556666677999999999999999999 899999999998877653 34456677888888888888888
Q ss_pred HHHHHHHHHh
Q 007134 282 NNALLDFYSK 291 (616)
Q Consensus 282 ~~~li~~y~~ 291 (616)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888876654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.62 Score=46.05 Aligned_cols=218 Identities=18% Similarity=0.140 Sum_probs=135.7
Q ss_pred HhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChh--hHHHHHHHHHH---cC
Q 007134 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-----KRNAV--SWSTLVVGLAV---NG 324 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-----~~~~~--~~~~li~~~~~---~g 324 (616)
-+.|+.+.|+++-+..-... +.-.-...+.+...+..|+++.|+++.+.-. ++|+. .-..|+.+-+. ..
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34556666665555544332 1223445667777777778888777777543 23332 12223332221 23
Q ss_pred CHHHHHHHHHHHHhCCCcCCHHH-HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 007134 325 FGKEALELFKEMEIGGFVPGEVT-FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403 (616)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (616)
+...|...-.+..+ +.||.+- -.....++.+.|++.++-.+++.+-+ ..|....+...+ +.+.|+. +.+=
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdt--a~dR 314 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDT--ALDR 314 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCc--HHHH
Confidence 45566665555444 5666533 23345678899999999999999865 346665554443 4456653 2222
Q ss_pred HHhC----CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhc-ccchHHHHHHHHHhhCC
Q 007134 404 IQNM----LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE-QRWLNVQEVRRTMVKER 477 (616)
Q Consensus 404 ~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~~ 477 (616)
+++. .++| +..+...+..+-...|++..|..-.+.+....|. .+.|..|.++-... |+-.++...+-+..+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A- 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA- 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC-
Confidence 2222 2566 4567777888889999999999999999999998 67888999887544 8888888777666543
Q ss_pred CccCCcee
Q 007134 478 VKKTPGHS 485 (616)
Q Consensus 478 ~~~~~~~s 485 (616)
..+|.|+
T Consensus 393 -PrdPaW~ 399 (531)
T COG3898 393 -PRDPAWT 399 (531)
T ss_pred -CCCCccc
Confidence 2345444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.014 Score=52.84 Aligned_cols=98 Identities=14% Similarity=0.241 Sum_probs=74.9
Q ss_pred HHHHHHhc--CCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC------------
Q 007134 298 AQRVFREM--RKRNAVSWSTLVVGLAVN-----GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC------------ 358 (616)
Q Consensus 298 A~~~f~~m--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 358 (616)
-...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 466778888888888764 67777888889999999999999999999987652
Q ss_pred ----CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC
Q 007134 359 ----GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396 (616)
Q Consensus 359 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 396 (616)
.+-+-|++++++|.. +|+-||.+++..+++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234667888888865 5888888888888888876664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.036 Score=47.96 Aligned_cols=88 Identities=13% Similarity=0.012 Sum_probs=37.9
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007134 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI 294 (616)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 294 (616)
+..-+.+.|++++|.++|+.+..-. +-+..-|-.+...|-..|++++|...|....... +.|...+-.+..+|.+.|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 3334444455555555554444321 1122222333333344444444444444444443 2334444444444555555
Q ss_pred HHHHHHHHHh
Q 007134 295 IIAAQRVFRE 304 (616)
Q Consensus 295 ~~~A~~~f~~ 304 (616)
.+.|.+.|+.
T Consensus 119 ~~~A~~aF~~ 128 (157)
T PRK15363 119 VCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.019 Score=58.72 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=96.1
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH
Q 007134 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMSE-R-----DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247 (616)
Q Consensus 174 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 247 (616)
.+.+......+++......+++++..++.+... + -..|..++|+.|...|..++++.+++.=..-|+-||.+|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 455566667777777777888888888877653 1 1235569999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007134 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292 (616)
Q Consensus 248 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 292 (616)
+.++..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999998877666666666555555555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0012 Score=48.97 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=25.5
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
..|++++|..+|+.+... .+-+...+..+..+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556666666655542 1223445555555555555555555555555
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.42 Score=50.52 Aligned_cols=150 Identities=11% Similarity=0.117 Sum_probs=87.4
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCC----cchHHHHHHHHHcCCCcHHHHHHHH
Q 007134 92 PMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPD----THTYPFLLKAISKLADVRMGEQTHS 167 (616)
Q Consensus 92 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~~~~~~~~~~~a~~~~~ 167 (616)
++++|++++-.|.++|. -|..+.+.|++-...++++.= |-..| ...|..+..-++....++.|.+.+.
T Consensus 749 ~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred chhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888877775 355666677776666665321 11111 1345556666666666666666655
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH
Q 007134 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247 (616)
Q Consensus 168 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 247 (616)
..-.. ..++.+|.+..++++-+.+-+.+++ |....-.|...+.+.|.-++|.+.|-+-- .|
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p----- 881 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LP----- 881 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----
Confidence 43211 2245555555566665555555554 33445566777777787777777665432 12
Q ss_pred HHHHHHHHhcCchHHHHHHHH
Q 007134 248 VSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 248 ~~ll~a~~~~~~~~~a~~~~~ 268 (616)
...+..|..++++.+|.++-.
T Consensus 882 kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 882 KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 134556667777766665543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.2 Score=50.18 Aligned_cols=159 Identities=16% Similarity=0.073 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ch----hhHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 284 ALLDFYSKCGIIIAAQRVFREMRKR---NA----VSWSTLVVGLAV---NGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
.++-.|....+++...++++.+... ++ ..-.....++-+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444588888888888888888754 11 112233445556 7889999999998666556677778777766
Q ss_pred HHhc---------CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH----HHHH---Hh-C---C-C--C
Q 007134 354 ACSH---------CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA----YEYI---QN-M---L-M--P 410 (616)
Q Consensus 354 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A----~~~~---~~-m---~-~--~ 410 (616)
.|-. ...+++|...|.+. +.+.|+..+--.++..+.-.|...+. .++- .. . + . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5532 23467777777754 35566655544444455555542222 2222 11 1 1 2 2
Q ss_pred CcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.|---+.+++.++.-.|+.+.|.++.++++++.|.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 35566788999999999999999999999998876
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.27 Score=46.86 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCh-hH---HHHHHHHHHhCCCccHHHHHHHHHHHCC
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE--RDL-VA---WNSVINGFASNGKPNEALTLFREMASEG 239 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g 239 (616)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|+..|++..+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33445567777777777777654 221 11 2234566777777888887777776653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.79 Score=45.33 Aligned_cols=303 Identities=14% Similarity=0.094 Sum_probs=176.4
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHh--cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHH--cCCCcHHHHHHHHH
Q 007134 93 MSYAHNIFSHVQDPNIFTWNTMIRGYAE--SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS--KLADVRMGEQTHSV 168 (616)
Q Consensus 93 ~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~--~~~~~~~a~~~~~~ 168 (616)
+..+.+.|..-. --.-|.+|-.++.. .|+-..|.++-.+-.+. +..|...+..++.+-. -.|+.+.|++-|+.
T Consensus 69 P~t~~Ryfr~rK--RdrgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeA 145 (531)
T COG3898 69 PYTARRYFRERK--RDRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEA 145 (531)
T ss_pred cHHHHHHHHHHH--hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 444555554322 12346666666654 45666666655544322 4566677777776543 45888888888888
Q ss_pred HHHhCCCCcHHH--HHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCC-CCC
Q 007134 169 AIRNGFESLVFV--QNSLVHMYAAFGHVKDACKVFELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREMASEG-VEP 242 (616)
Q Consensus 169 ~~~~g~~~~~~~--~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 242 (616)
|... |.... ...|.----+.|+.+.|.+.-+..-. | =.-.|.+.+...+..|+++.|+++.+.-+... +.+
T Consensus 146 Ml~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~ 222 (531)
T COG3898 146 MLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK 222 (531)
T ss_pred HhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch
Confidence 8652 22221 11222223456777777777666543 2 23467788888888899999998888765443 344
Q ss_pred CHH--HHHHHHHHHHh---cCchHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHH
Q 007134 243 DGY--TMVSLFSACAE---LGALALGRRAHTYVWKVGLSDNVNVN-NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTL 316 (616)
Q Consensus 243 ~~~--t~~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 316 (616)
|.. .-..++.+-+. ..+...|+..-.+..|. .||..-. -.-...|.+.|++.++-.+++.+-+.....- +
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--i 298 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--I 298 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--H
Confidence 442 22233333221 12455555555554443 3332221 1223567888999999998888865333222 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-CCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh-
Q 007134 317 VVGLAVNGFGKEALELFKEMEI-GGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR- 393 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 393 (616)
...|....-.+.++.-+++... ..++||. .+...+..+....|++..|..--+... ...|....|..|.+.-.-
T Consensus 299 a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAe 375 (531)
T COG3898 299 ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAE 375 (531)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhc
Confidence 2333333333445544444432 1245554 556667777788888888877666554 456888888888877554
Q ss_pred cCCHHHHHHHHHhCC
Q 007134 394 AGLVKQAYEYIQNML 408 (616)
Q Consensus 394 ~g~~~~A~~~~~~m~ 408 (616)
.|+-.++...+-+..
T Consensus 376 tGDqg~vR~wlAqav 390 (531)
T COG3898 376 TGDQGKVRQWLAQAV 390 (531)
T ss_pred cCchHHHHHHHHHHh
Confidence 488888888886663
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.00089 Score=41.63 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCCCchhhhhHHhHhcccchHHHH
Q 007134 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 468 (616)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.038 Score=45.97 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=49.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHH
Q 007134 115 IRGYAESANPLLAVELYSKMHVSGIKPD--THTYPFLLKAISKLADVRMGEQTHSVAIRNGFES---LVFVQNSLVHMYA 189 (616)
Q Consensus 115 i~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~ 189 (616)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...... +. +..+...+.-.+.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3455566777777777777777665433 2234455556666677777777776666542 11 2222223333455
Q ss_pred hcCCHHHHHHHHhhc
Q 007134 190 AFGHVKDACKVFELM 204 (616)
Q Consensus 190 ~~g~~~~A~~~f~~~ 204 (616)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666666655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.073 Score=44.25 Aligned_cols=92 Identities=17% Similarity=0.084 Sum_probs=54.8
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 007134 215 VINGFASNGKPNEALTLFREMASEGVEPD--GYTMVSLFSACAELGALALGRRAHTYVWKVGLS--DNVNVNNALLDFYS 290 (616)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~y~ 290 (616)
+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566777888888888888877775544 235556666777777777777777776654211 01122222223445
Q ss_pred hcCCHHHHHHHHHhcC
Q 007134 291 KCGIIIAAQRVFREMR 306 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~ 306 (616)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566666666654443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.33 Score=42.86 Aligned_cols=63 Identities=17% Similarity=0.046 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFRE 304 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 304 (616)
|+...-..+..+....|+..+|...|.+...--+..|..+.-.+.++....++...|...++.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 333333344444444444444444444444333344444444444444444444444444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.16 Score=47.27 Aligned_cols=234 Identities=15% Similarity=0.046 Sum_probs=136.9
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH-HcCCC-cHH-HHHHHHHHHHhCCCCcHHHHHHH
Q 007134 108 IFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI-SKLAD-VRM-GEQTHSVAIRNGFESLVFVQNSL 184 (616)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~-~~~~~-~~~-a~~~~~~~~~~g~~~~~~~~~~L 184 (616)
..-|+.-+..+++....++|..-++.....+ .||-+ |...-..+ .+.|. +.- .+-+|..+.+. .+ .-+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~--lg--npqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY--LG--NPQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHh--cC--CcHHHH
Confidence 3456666666666666666655554443321 12210 00000000 01111 111 23344444432 11 225667
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC--CC--------hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007134 185 VHMYAAFGHVKDACKVFELMSE--RD--------LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 254 (616)
+..|.-..-+++-...|+.-.. .. ...-+.++..+.-.|.+.-.+.++++.++...+-+......+.+.-
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 7666655555555555554332 12 2234566777777888888888888888876666777777888888
Q ss_pred HhcCchHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCH
Q 007134 255 AELGALALGRRAHTYVWKVG-----LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFG 326 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~ 326 (616)
.+.|+.+.|...++...+.. ...+..+.......|.-.+++..|...|+++... |++.-|.-.-+..-.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 88899999988888776643 2333334444444566677788888888777654 555566555555667888
Q ss_pred HHHHHHHHHHHhCCCcCCHHHHH
Q 007134 327 KEALELFKEMEIGGFVPGEVTFV 349 (616)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~~t~~ 349 (616)
.+|++.++.|... .|...+-+
T Consensus 303 ~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 303 KDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHhcc--CCccchhh
Confidence 8888888888874 45444433
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0075 Score=61.00 Aligned_cols=96 Identities=16% Similarity=0.010 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcH----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhh
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNA----VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 454 (616)
+...|+.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|++++|+..+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3667778888888888888888888764 566753 35788888888888888888888888776321 221111
Q ss_pred H--HhHhcccchHHHHHHHHHhhCCC
Q 007134 455 N--LYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 455 ~--~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
. .+......++..++++.+++-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11122344566666776666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.016 Score=55.81 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CCchhhhhH
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH---SGDYVLLSN 455 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 455 (616)
|..-+..+.+.|++++|...|+... ..|+ ...+..+..++...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444445566666666665552 2232 1344556666666777777777777776666654 333444566
Q ss_pred HhHhcccchHHHHHHHHHhh
Q 007134 456 LYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 456 ~y~~~g~~~~a~~~~~~m~~ 475 (616)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777766644
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.2 Score=53.47 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
..|..+.-.....|++++|...++++.. +.|+...|..+...+...|+.++|.+.+++.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444455677777777776653 3356666666667777777777777666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.067 Score=51.53 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----cHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP----NAVIWRTLL 420 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p----d~~~~~~ll 420 (616)
.|...+....+.|++++|...|+.+.+.|.-.+- ...+.-+...|...|++++|...|+.+. ..| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444557777777777777665421110 2345566777777788888877777662 122 234555566
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788999999999999988888744
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.24 Score=46.20 Aligned_cols=134 Identities=13% Similarity=0.006 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCC----CCChhhHHHH
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI----MPKIEHFGCM 387 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~----~p~~~~~~~l 387 (616)
.-+.++..+.-+|.+.-.+.++++.++...+-+......|.+.-.+.|+.+.|..+|+...+..+. .....+...+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345667777778888888999999988765666777788888888999999999999987664222 2222222233
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 388 VDLLGRAGLVKQAYEYIQNMLM-PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~~-~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
...|.-++++.+|...+.+.+. .| |+...|.-.-...-.|+...|.+..+.+.+..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3445556667777777766642 22 4444444333444556777777777777766665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.01 Score=44.52 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 389 DLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..|.+.+++++|.++++.+- ..| +...|......+...|++++|...++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 46788899999999998873 556 56778888888999999999999999999999976544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0067 Score=40.35 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
+|..+..++...|++++|+++++++++.+|+++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 67788899999999999999999999999998877766653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.2 Score=44.48 Aligned_cols=158 Identities=13% Similarity=-0.031 Sum_probs=101.5
Q ss_pred HHHHHHHHH-HHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhcCCHHHHHHHHHhcCCCChh---------
Q 007134 244 GYTMVSLFS-ACAELGALALGRRAHTYVWKVGLSDNVNVNNALL--DFYSKCGIIIAAQRVFREMRKRNAV--------- 311 (616)
Q Consensus 244 ~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~y~~~g~~~~A~~~f~~m~~~~~~--------- 311 (616)
-.++-.+-. .+...++.+.|.++-..+.+..- .+ .+..++ .++.-.++.+.|...|++..+-|+.
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASM 244 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhh
Confidence 344433332 34567888888888777776541 11 222222 2334467888999999887754332
Q ss_pred ------hHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-h
Q 007134 312 ------SWSTLVVGLAVNGFGKEALELFKEMEIG---GFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-I 381 (616)
Q Consensus 312 ------~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 381 (616)
.|..-..-..++|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|+.--+...+ +.|. +
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syi 321 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYI 321 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHH
Confidence 2223334456789999999999998763 4566667777777788899999999988877764 3332 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
..|..-..++.-.+++++|.+-+++.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333334455667888888888665
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=1.3 Score=42.25 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=41.0
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHHhcCchHHHHHHHHHHHHh
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY-TM---VSLFSACAELGALALGRRAHTYVWKV 273 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~a~~~~~~~~~a~~~~~~~~~~ 273 (616)
+...+-.....+.+.|++++|++.|+++...- |+.. +- ..+..++.+.++++.|...++..++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34444445566677888888888888887753 3322 21 23445666777777777777777664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.57 Score=49.18 Aligned_cols=91 Identities=11% Similarity=-0.035 Sum_probs=60.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchh--------
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV-------- 451 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-------- 451 (616)
+.++...+..-+-+...+.-|-++|.+|+-. .++.......+++++|..+.++.-+.-|+.--.|.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 4555555556666777788899999998722 34555667889999999999887666555221121
Q ss_pred --hhhHHhHhcccchHHHHHHHHHhhC
Q 007134 452 --LLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 452 --~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
-.-.+|-++|+-.||.++++++...
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2234566777777777777766543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.90 E-value=2.3 Score=43.03 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=63.3
Q ss_pred CCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007134 73 LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNI---FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149 (616)
Q Consensus 73 ~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 149 (616)
|.|...|-.||..|...+ .+++-++++++|..|-+ ..|..-|++=....+++....+|.+.+..... ...|..-
T Consensus 39 PtnI~S~fqLiq~~~tq~-s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQE-SMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhh-hHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHH
Confidence 578899999999999998 99999999999988753 57999998888888999999999999876444 3344444
Q ss_pred HHHHHc
Q 007134 150 LKAISK 155 (616)
Q Consensus 150 l~~~~~ 155 (616)
+.-..+
T Consensus 116 l~YIRr 121 (660)
T COG5107 116 LEYIRR 121 (660)
T ss_pred HHHHHh
Confidence 443333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.89 E-value=3.3 Score=44.71 Aligned_cols=84 Identities=8% Similarity=0.010 Sum_probs=43.3
Q ss_pred HHHHHHhCCCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCCc--hHHHHHHHHHHHCCCCCCcchHHHHHHHHHcC
Q 007134 82 LIYAIVSLSFPMSYAHNIFSHVQDPN---IFTWNTMIRGYAESANP--LLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156 (616)
Q Consensus 82 li~~y~~~~~~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 156 (616)
+|+-+...+ .+..|+++-..+..|. ...|.....-+.+..+. +++++..++=+..- .-...+|..+.+-....
T Consensus 443 vi~Rl~~r~-~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRH-LYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcc-hhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhc
Confidence 444555555 6777777766666554 33444444445544322 23333333322221 12345566666666666
Q ss_pred CCcHHHHHHHH
Q 007134 157 ADVRMGEQTHS 167 (616)
Q Consensus 157 ~~~~~a~~~~~ 167 (616)
|+++.|..+.+
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 77777766654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.052 Score=44.69 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=72.0
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC----CchhhhhHHhHhccc
Q 007134 389 DLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS----GDYVLLSNLYAYEQR 462 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~y~~~g~ 462 (616)
-++...|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|.+-+++++++..+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999998765 3444 678899999999999999999999999987754422 347778888999999
Q ss_pred chHHHHHHHHHhhCCC
Q 007134 463 WLNVQEVRRTMVKERV 478 (616)
Q Consensus 463 ~~~a~~~~~~m~~~~~ 478 (616)
-+.|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988877663
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.21 Score=41.37 Aligned_cols=140 Identities=13% Similarity=0.070 Sum_probs=86.4
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+- .|.. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis----------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDIS----------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GG----------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCch----------hhcchHHH
Confidence 3467788888888887763 35566777775555555666666666666432 3332 33444444
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 401 ~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
...+-.++ .+......-+......|+-+.-.++...+.+.+..+|....-++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444333 233444556777888999999999998887655556778889999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.022 Score=43.45 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM-------L-MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555555555433 1 1122 24555555566666666666666665543
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.68 E-value=2.8 Score=42.50 Aligned_cols=333 Identities=14% Similarity=0.078 Sum_probs=173.6
Q ss_pred hCCCCHHHHHHHHhhCCC------------------CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC----CCCcch
Q 007134 88 SLSFPMSYAHNIFSHVQD------------------PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI----KPDTHT 145 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~t 145 (616)
+.+ .+..|...|..-.+ +|-+-=+..+..+...|++.++..++++|...=. ..|..+
T Consensus 91 ~~k-~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 91 KQK-EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred Hhh-hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 455 68999888753321 2233346777888899999999999999876533 378888
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHHhcCC-----------------------------
Q 007134 146 YPFLLKAISKLADVRMGEQTHSVAIRN---GFESLVFVQNSLVHMYAAFGH----------------------------- 193 (616)
Q Consensus 146 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~Li~~y~~~g~----------------------------- 193 (616)
|+.++-.++++ ++-++++. .+-|| |--++-.|-+.=.
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 98866555432 22222221 12222 1122222222110
Q ss_pred -----HHHHHHHHhhc-CCCC-hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCchHH
Q 007134 194 -----VKDACKVFELM-SERD-LVAWNSVINGFASNGKPNEALTLFREMASEGVEP----DGYTMVSLFSACAELGALAL 262 (616)
Q Consensus 194 -----~~~A~~~f~~~-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~~~~~~ 262 (616)
+-++.+.++.- ..|+ ......|+..+.+ +.+++..+-+.+....+.+ =..+|..++..+.+.++...
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 11112222111 0121 1122233333443 4555555555544332221 23578889999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHH-------HHHHHHHh----cCCHHHHHHHHHhcCCCChhhH---HHHH---HHHHHcCC
Q 007134 263 GRRAHTYVWKVGLSDNVNVNN-------ALLDFYSK----CGIIIAAQRVFREMRKRNAVSW---STLV---VGLAVNGF 325 (616)
Q Consensus 263 a~~~~~~~~~~g~~~~~~~~~-------~li~~y~~----~g~~~~A~~~f~~m~~~~~~~~---~~li---~~~~~~g~ 325 (616)
|.+.+..+.-. .|+..+.. .+.++.+. .-++.+=..+++.+...|+..- ..|+ .-+-+.|.
T Consensus 317 a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~ 394 (549)
T PF07079_consen 317 AKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQ 394 (549)
T ss_pred HHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCC
Confidence 99988876553 33333222 22233221 1112333444444444333211 1122 22334444
Q ss_pred -HHHHHHHHHHHHhCCCcCC-HHH----HHHHHHHHhc---CCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHH--
Q 007134 326 -GKEALELFKEMEIGGFVPG-EVT----FVGVLYACSH---CGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDL-- 390 (616)
Q Consensus 326 -~~~A~~l~~~m~~~g~~p~-~~t----~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~-- 390 (616)
-++|+++++...+ +.|. ... +..+=.+|.+ ...+.+-..+-+-+.+ -|++|- ...-|.|.++
T Consensus 395 ~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e-~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 395 CDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE-VGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred ccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCCcccccHHHHHHHHHHHHH
Confidence 7788888887766 2332 222 2222223322 2334444444444433 377664 3345555554
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 007134 391 LGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~ 439 (616)
+...|++.++.-.-.-+ .+.|.+.+|.-+.-.....+++++|...+..+
T Consensus 472 Lysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 55678888876555444 36778888877777777888888888777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.14 Score=42.96 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=29.2
Q ss_pred CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 341 FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 341 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
..|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4556666666666666666666666666666666665555555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.17 Score=48.40 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=43.3
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHhhcCC---CChhHHHHH
Q 007134 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG---HVKDACKVFELMSE---RDLVAWNSV 215 (616)
Q Consensus 142 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~~~~---~~~~~~~~l 215 (616)
|...|-.|..+|...|+.+.|..-|..+.+.. ++++..+..+..++.... ...++..+|+++.. .|+.+-.-|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 33445455555555555555555555544432 233333333333322221 22344555555433 133344444
Q ss_pred HHHHHhCCCccHHHHHHHHHHHC
Q 007134 216 INGFASNGKPNEALTLFREMASE 238 (616)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~ 238 (616)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 45555555555555555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.06 Score=53.13 Aligned_cols=256 Identities=14% Similarity=0.061 Sum_probs=150.4
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHcCCCcHHHHHHHHHHHH--h--CC-CCcHHHHHHHHHH
Q 007134 117 GYAESANPLLAVELYSKMHVSGIKPDTH----TYPFLLKAISKLADVRMGEQTHSVAIR--N--GF-ESLVFVQNSLVHM 187 (616)
Q Consensus 117 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~Li~~ 187 (616)
-+++.|+.+..+.+|+..++.|.. |-. .|..+-++|.-.+|+++|.++|..=+. . |- .-.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 367788888889999988887643 333 355566677777888888888754221 1 10 0011222234444
Q ss_pred HHhcCCHHHHHHHHhhcC-------CC--ChhHHHHHHHHHHhCCC--------------------ccHHHHHHHHHH--
Q 007134 188 YAAFGHVKDACKVFELMS-------ER--DLVAWNSVINGFASNGK--------------------PNEALTLFREMA-- 236 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~-- 236 (616)
+--.|.+++|.-.-.+-. .+ ...++..+...|...|+ ++.|.++|.+=+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 455566766654332211 11 12234445666665443 223444443321
Q ss_pred --HCCCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHH----hCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 007134 237 --SEGVE-PDGYTMVSLFSACAELGALALGRRAHTYVWK----VGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMR-- 306 (616)
Q Consensus 237 --~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-- 306 (616)
+.|-. .-...|..+.+.|.-+|+++.|...|+.-.. .|- ......+..|.++|.-.|+++.|.+.|....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 1113455555556667889999888875432 332 2234566778888888999999998887542
Q ss_pred -----CCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CC-CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 307 -----KRN--AVSWSTLVVGLAVNGFGKEALELFKEMEI----GG-FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 307 -----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
.+. ..+.-+|...|.-..++++|+.++.+=.. .+ ..-....+-+|..++...|.-++|+.+.+.-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333 33556677788878888899888775432 11 122345677888888888888888876665443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=4.5 Score=43.25 Aligned_cols=129 Identities=12% Similarity=0.047 Sum_probs=67.0
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHC-CCCCCcchHHHH-------HHHHHcCCCcHHHHH
Q 007134 93 MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVS-GIKPDTHTYPFL-------LKAISKLADVRMGEQ 164 (616)
Q Consensus 93 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~l-------l~~~~~~~~~~~a~~ 164 (616)
+++|.+..+.- |.+..|..+...-.+.-.++.|...|-+.... |++.-.. +..+ ...-+--|.+++|.+
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 66666666554 44556777776666666666666666555432 3221000 0000 011122367777777
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHhCCCccHHHHHHH
Q 007134 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-----DLVAWNSVINGFASNGKPNEALTLFR 233 (616)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~ 233 (616)
++-.+-++. .-|.++.+.|++-...++++.-... -..+|+.+...++....|++|.+.|.
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776654432 3456666777776666666543211 12345555555555445555544443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.40 E-value=6.3 Score=44.96 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=19.0
Q ss_pred CCcHHHHHHHHHHHHhcC--CHHHHHHHHhhcC
Q 007134 175 ESLVFVQNSLVHMYAAFG--HVKDACKVFELMS 205 (616)
Q Consensus 175 ~~~~~~~~~Li~~y~~~g--~~~~A~~~f~~~~ 205 (616)
.|+ .-.-.+|..|++.+ .+++|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344 44556777777777 6677766665554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.016 Score=44.20 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCC---CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQL----EPKH---SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+++.+...+...|++++|+..+++++++ ++++ ..++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57888999999999999999999999754 2222 34566899999999999999999987643
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.63 Score=43.09 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=25.9
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 400 (616)
+..-|.+.|.+..|..-++.+.+++.-.+. ......|+..|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344466666666666666666665422221 22344556666666666543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.12 Score=51.31 Aligned_cols=62 Identities=10% Similarity=-0.019 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+..|..++.+.+++..|+....++++++|+|..+...-+.+|...|.++.|+..|+++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45666777788888899999999999999999888888889999999999999999988876
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.44 Score=40.56 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 391 LGRAGLVKQAYEYIQNM----LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..+.|++++|.+.|+.+ |..| ....-..|+.++...+++++|...+++.+++.|.++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 44667777777777666 2223 23455667778888888888888888888888886544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.22 Score=41.88 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=37.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCcHHHHHHHHHHHHHc
Q 007134 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPPNAVIWRTLLGACTIH 426 (616)
Q Consensus 376 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd~~~~~~ll~a~~~~ 426 (616)
...|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.-+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 55678888888888888888888888877665 4554677888887655433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.06 Score=46.88 Aligned_cols=60 Identities=22% Similarity=0.119 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+...++..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.+.++.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 556677778889999999999999999999999999999999999999999999998774
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.21 Score=49.70 Aligned_cols=138 Identities=16% Similarity=0.010 Sum_probs=97.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC
Q 007134 317 VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL 396 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 396 (616)
...|.+.|++..|...|++.... |. +.+.-+.++.... .. .-...++.+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~-~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKA-EA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHH-HH--------HHHHHhhHHHHHHHhhhh
Confidence 45777888888888888876541 00 0011111221111 11 224456778888999999
Q ss_pred HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHH-HHHHHHH
Q 007134 397 VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV-QEVRRTM 473 (616)
Q Consensus 397 ~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 473 (616)
+.+|++..++. ...| |+...-.=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+.....+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988776 3444 7777777788999999999999999999999999987777777777666655554 6788888
Q ss_pred hhC
Q 007134 474 VKE 476 (616)
Q Consensus 474 ~~~ 476 (616)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.83 E-value=3.2 Score=38.19 Aligned_cols=193 Identities=19% Similarity=0.127 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRK-----RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
..........+...+.+..+...+..... .....+..+...+...+.+..+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34444555555556666666555555431 2333444455555555666666666666655332221 11111112
Q ss_pred -HHhcCCChHHHHHHHHHhHHhhCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc--HHHHHHHHHHHHH
Q 007134 354 -ACSHCGMVDEGFSYFKRMKDEYGIMP----KIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN--AVIWRTLLGACTI 425 (616)
Q Consensus 354 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd--~~~~~~ll~a~~~ 425 (616)
.+...|+++.+...+..... ..| ....+......+...++.++|...+.+.. ..|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 45666677777766666632 222 23333333344556667777777766552 2333 4566666667777
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++++.+...+...+...|.....+..++..+...|.++++...+....+
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777665344455555555555667777766665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.17 Score=47.86 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C---CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CCchhhh
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNM----L---MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH---SGDYVLL 453 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m----~---~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 453 (616)
|+.-++. .+.|++.+|...|... | ..||..-| |..++...|+++.|...|..+.+-.|++ |+.+.-|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444443 3555566666666544 1 34455444 6677777788888888877777666654 4456677
Q ss_pred hHHhHhcccchHHHHHHHHHhh
Q 007134 454 SNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 454 ~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+.+..+.|+.++|..+++...+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 7777788888888888877754
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.18 Score=51.26 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI----EHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
+...++.+..++.+.|++++|...|++..+ +.|+. ..|..+..+|...|++++|++.+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 446777888888888888888888888764 34663 34788888888888888888888765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.59 E-value=4.7 Score=45.88 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=83.1
Q ss_pred CCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 007134 192 GHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271 (616)
Q Consensus 192 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 271 (616)
|+++.|+.-+.++. ...|.-.+.---++|.+.+|+.++ .|+...+..+..+|++. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 44555555554443 223333444444555666665553 56666666666555431 11
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH--HH
Q 007134 272 KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT--FV 349 (616)
Q Consensus 272 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~ 349 (616)
+.. .++--.-+|.++|++++|.+. |...|++.+|+.+-.+|... -|... --
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHH
Confidence 111 122233457777777776654 44567777777777766531 12211 13
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 350 GVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 350 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.|..-+...++.-+|-++..+...+ +...+..|++.-.+++|+.+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 4555566667766666666555432 223445566666777777666544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=3.8 Score=37.89 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=39.4
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
...-..+|...+..+.... ..+--.+...|.+.|.+..|..-++.+ |-.| .......++.++...|..+.
T Consensus 122 ~S~y~~~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRL-----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred CchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 3444455555444443310 122234567788888888887776665 3222 22466677778888887774
Q ss_pred HH
Q 007134 432 AE 433 (616)
Q Consensus 432 a~ 433 (616)
+.
T Consensus 197 a~ 198 (203)
T PF13525_consen 197 AD 198 (203)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.82 Score=47.66 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=83.1
Q ss_pred HhCCCccHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 220 ASNGKPNEALTLFR-EMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 220 ~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
.-.++++++.++.. .-.-..++ ..-...++.-+.+.|..+.|.++-.. . ..-.+...++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHH
Confidence 34555555555443 11111121 23345555556666666666654321 1 1223445677888888
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCC
Q 007134 299 QRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378 (616)
Q Consensus 299 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 378 (616)
.++-++.. +...|..|.......|+.+-|.+.|++... |..|+-.|.-.|+.+.-.++-+.....
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~---- 402 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER---- 402 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT----
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc----
Confidence 77765554 556788888888888888888888877542 344555566677776666665555432
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 007134 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (616)
.-++....++.-.|+.++..+++.+-+.
T Consensus 403 ---~~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 403 ---GDINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp ---T-HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred ---cCHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 1234444455556777777777766553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.46 Score=48.55 Aligned_cols=78 Identities=8% Similarity=0.038 Sum_probs=48.1
Q ss_pred HHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 398 KQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 398 ~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+|.++.++. ...| |+.....+..+....++++.|...|+++..++|+.+..+...+....-.|+.++|.+.+++..+
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3344444333 2333 5555555666566666677777777777777777766666677666777777777776666433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.8 Score=35.99 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007134 249 SLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 292 (616)
.++..+.+.+.......+++.+.+.+ ..+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 45555555566666666666666655 35556666677666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.35 E-value=4.2 Score=37.40 Aligned_cols=193 Identities=19% Similarity=0.106 Sum_probs=113.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-hhhHHHHHH-HHHHc
Q 007134 249 SLFSACAELGALALGRRAHTYVWKV-GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--N-AVSWSTLVV-GLAVN 323 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~-~~~~~~li~-~~~~~ 323 (616)
.....+...+.+..+...+...... ........+..+...+...+++..+.+.+...... + ......... .+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc
Confidence 3333334444444444444333321 12233334444444555555556666666555432 1 122222223 67777
Q ss_pred CCHHHHHHHHHHHHhCCCcC----CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHH
Q 007134 324 GFGKEALELFKEMEIGGFVP----GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~ 398 (616)
|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...++++
T Consensus 144 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 144 GDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred CCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHH
Confidence 888888888887754 222 223333444445667888888888888875 2333 3566777788888888888
Q ss_pred HHHHHHHhCC-CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 399 QAYEYIQNML-MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 399 ~A~~~~~~m~-~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
+|...+.... ..|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8888887663 4444 445555555555677789999999998888876
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.30 E-value=5.5 Score=40.22 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---Ch----hHHHHHHHHHHh---CCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007134 183 SLVHMYAAFGHVKDACKVFELMSER---DL----VAWNSVINGFAS---NGKPNEALTLFREMASEGVEPDGYTMVSLFS 252 (616)
Q Consensus 183 ~Li~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 252 (616)
.|+-.|-...+++...++++.+... +. ..--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444688888999999999888753 11 111233445556 7889999999998766666788888877766
Q ss_pred HH
Q 007134 253 AC 254 (616)
Q Consensus 253 a~ 254 (616)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.27 E-value=2.2 Score=36.69 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 284 ALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
.++..+.+.+.......+++.+... +....|.++..|++.+ ..+.++.++. .++......+++.|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4455555556666666666665433 3445666676666653 2344444442 1223334445666666666
Q ss_pred hHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 007134 361 VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA-GLVKQAYEYIQNMLMPPNAVIWRTLLGACT 424 (616)
Q Consensus 361 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~ 424 (616)
++++..++..+.. |...++.+... ++.+.|.+++.+-. +...|..++..+.
T Consensus 85 ~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 6666666655422 12223333333 56666666665522 4455655555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.4 Score=45.17 Aligned_cols=101 Identities=18% Similarity=0.204 Sum_probs=81.8
Q ss_pred HHHHHHHHhcC--CCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC---------
Q 007134 296 IAAQRVFREMR--KRNAVSWSTLVVGLAVN-----GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG--------- 359 (616)
Q Consensus 296 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--------- 359 (616)
-..++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456777776 67888999998888765 567777788899999999999999999999876533
Q ss_pred -------ChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCH
Q 007134 360 -------MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV 397 (616)
Q Consensus 360 -------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 397 (616)
.-+=+++++++|.. +|+.||..+-..|++++++.|..
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23447889999965 69999999999999999998864
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.1 Score=32.16 Aligned_cols=32 Identities=22% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888899999999999999999998886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.59 Score=40.58 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
.++..+...|++++|+.+.+++.... +-|...+..++.++...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34445555566666666666555532 224455555666666666666666555554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.88 E-value=2 Score=41.18 Aligned_cols=121 Identities=11% Similarity=0.020 Sum_probs=84.6
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHH---HHHHHHHcCCcH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRT---LLGACTIHGHSA 430 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~---ll~a~~~~g~~~ 430 (616)
.....|+..+|...|+..... .+-+...-..|+..|...|+.+.|..++..++.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345678888888888888763 233356667788889999999999999999874433333332 233444444444
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
+...+-++ ...+|++...-..++..|...|+.++|.+.+-.+.+++
T Consensus 221 ~~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44444333 35689888888899999999999999998887776543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.75 E-value=2.5 Score=44.70 Aligned_cols=159 Identities=16% Similarity=0.061 Sum_probs=104.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCH-----HHHHHHHHHHh----cCCChHHHHHHHHHhHHhhCCCCChhh
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIG-GFVPGE-----VTFVGVLYACS----HCGMVDEGFSYFKRMKDEYGIMPKIEH 383 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~ 383 (616)
..+++...-.|+-+.+++++.+-.+. ++.-.. .+|..++..+. .....+.|.++++.+.++| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 34445555567777777777665543 222111 12333332222 2567889999999998765 77665
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHhCCC------CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchh-hhhH
Q 007134 384 FGCM-VDLLGRAGLVKQAYEYIQNMLM------PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV-LLSN 455 (616)
Q Consensus 384 ~~~l-i~~~~~~g~~~~A~~~~~~m~~------~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 455 (616)
|.-. .+.+...|++++|++.|++... +.....+--+...+....++++|...+.++.+...-+...|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5443 3567789999999999987531 112344445666778889999999999999987766555555 5566
Q ss_pred HhHhcccc-------hHHHHHHHHHhh
Q 007134 456 LYAYEQRW-------LNVQEVRRTMVK 475 (616)
Q Consensus 456 ~y~~~g~~-------~~a~~~~~~m~~ 475 (616)
+|...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 67788888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.71 E-value=2 Score=45.49 Aligned_cols=171 Identities=16% Similarity=0.063 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C---------hhHHHHHHHHHHhC----CCccH
Q 007134 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-D---------LVAWNSVINGFASN----GKPNE 227 (616)
Q Consensus 162 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~---------~~~~~~li~~~~~~----g~~~~ 227 (616)
+.-++..++.. +||. ...++...+=.||-+.+++.+.+..+. + ...|+.++..+... ...+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555543 3333 234555555666666666666654331 1 12355555444433 34566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCchHHHHHHHHHHHHh--CC-CCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007134 228 ALTLFREMASEGVEPDGYTMVSLF-SACAELGALALGRRAHTYVWKV--GL-SDNVNVNNALLDFYSKCGIIIAAQRVFR 303 (616)
Q Consensus 228 A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~--g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (616)
|.+++..+.+. -|+...|...- +.+...|+++.|.+.++..... .. +.....+--+.-.+.-.+++++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 77777777664 56665554332 3445667788888877765431 11 1122223335556777889999999999
Q ss_pred hcCCCChh---hHHHH-HHHHHHcCCH-------HHHHHHHHHHHh
Q 007134 304 EMRKRNAV---SWSTL-VVGLAVNGFG-------KEALELFKEMEI 338 (616)
Q Consensus 304 ~m~~~~~~---~~~~l-i~~~~~~g~~-------~~A~~l~~~m~~ 338 (616)
.+.+.+.. .|.-+ ..++...|+. ++|.++|.+...
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88865432 33333 3345556777 888888887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.17 Score=31.01 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777888888999999999999998888874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.4 Score=43.30 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=22.3
Q ss_pred HHhCCCccHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCchHHHHH
Q 007134 219 FASNGKPNEALTLFREMASEG--VEPDGYTMVSLFSACAELGALALGRR 265 (616)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~ 265 (616)
+.+..+.++|+..+.+-...- ..---.++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 344566667776666554321 11112344444455555555544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.2 Score=36.44 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHhcCCCCC
Q 007134 429 SAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~ 447 (616)
...|...|+.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 4567777777787777743
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.39 E-value=7.8 Score=40.11 Aligned_cols=57 Identities=11% Similarity=-0.011 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
.+..+.-+.|+.++|++.|++|.+.... .+......|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3455555667777777777776653211 12234445666666666666666666554
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=5.9 Score=40.79 Aligned_cols=158 Identities=12% Similarity=0.057 Sum_probs=102.7
Q ss_pred hhH--HHHHHHHHHcC-----CHHHHHHHHHHHHh-CCCcCCHH-HHHHHHHHHh---------cCCChHHHHHHHHHhH
Q 007134 311 VSW--STLVVGLAVNG-----FGKEALELFKEMEI-GGFVPGEV-TFVGVLYACS---------HCGMVDEGFSYFKRMK 372 (616)
Q Consensus 311 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 372 (616)
..| ...+.|....- ..+.|+.+|.+... +...|+.. .|..+..++. ...+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555554421 35678888888872 23566642 3333222221 1334556666666665
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY 450 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 450 (616)
+ --+-|......+..++.-.|+++.|...|++. ...|| ..+|......+...|+.++|.+.++++++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 22334666666777778888899999999887 47786 46777777788889999999999999999999855443
Q ss_pred h--hhhHHhHhcccchHHHHHHH
Q 007134 451 V--LLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 451 ~--~l~~~y~~~g~~~~a~~~~~ 471 (616)
. ..+++|... ..++|.+++-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHh
Confidence 3 334456554 4677777764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.19 E-value=1.5 Score=45.69 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=69.0
Q ss_pred HHHcCCHHHHHHHHHH-HHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 007134 320 LAVNGFGKEALELFKE-MEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 398 (616)
....++++++.++.+. -.-..+ | ..-...++.-+.+.|..+.|+++-..-.. -.+...+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 3445666666555541 111111 1 23355566666667777776655433322 134455677777
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 399 QAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 399 ~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
.|.++.++.. +...|..|.......|+++.|++.+++. ..+..|.-+|.-.|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 7776665543 5667777777777777777777777663 245556666666776666666555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.96 E-value=17 Score=39.82 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHH
Q 007134 214 SVINGFASNGKPNEALTLFREMAS 237 (616)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~ 237 (616)
.|+.-|...+++..|++++-..++
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhccC
Confidence 377778888888888888777653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.74 Score=43.47 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=76.2
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHhC-----CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------------
Q 007134 197 ACKVFELMS--ERDLVAWNSVINGFASN-----GKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL------------ 257 (616)
Q Consensus 197 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 257 (616)
.++.|...+ ++|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|..+|+.+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 56777777777766543 44555566677888888888888888888765432
Q ss_pred ----CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC
Q 007134 258 ----GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII-IAAQRVFREMR 306 (616)
Q Consensus 258 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~ 306 (616)
.+-+-+..++++|...|+.||-.+-..|++++++.|.. .+..++.-.|+
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 24456778888888899999988888888888877653 33344433343
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.59 E-value=8.4 Score=37.10 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=31.4
Q ss_pred HHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007134 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206 (616)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 206 (616)
.....+++..+..++..+.... +.+..+.-.|...|...|+.+.|..+++.++.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 3445566666666666665543 22344445566666666666666666666654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=20 Score=39.59 Aligned_cols=116 Identities=11% Similarity=-0.027 Sum_probs=66.9
Q ss_pred cCCHHHHHHHHHHHHhC-CCcCCH--HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH
Q 007134 323 NGFGKEALELFKEMEIG-GFVPGE--VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~-g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 399 (616)
..+.+.|..++...... +..++. .....+.......+...++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34568888888877443 333332 22333333333332256666666655431 1234444444555558889998
Q ss_pred HHHHHHhCCC--CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 400 AYEYIQNMLM--PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 400 A~~~~~~m~~--~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
+...|..|+. .-...-.-=+..+....|+.++|...++++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888888852 11222222355566668999999999988743
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=9.8 Score=35.92 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=32.8
Q ss_pred HhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 007134 189 AAFGHVKDACKVFELMSER------DLVAWNSVINGFASNGKPNEALTLFREMASE 238 (616)
Q Consensus 189 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (616)
.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4667777777777777542 1223344556677777888888777777654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.5 Score=41.52 Aligned_cols=85 Identities=19% Similarity=0.095 Sum_probs=38.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCc--CCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHH
Q 007134 322 VNGFGKEALELFKEMEIGGFV--PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 398 (616)
+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.++++-.|. .+.+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344455555555555543210 00122333555555555555555555555554433333 233334444444444444
Q ss_pred HHHHHHHh
Q 007134 399 QAYEYIQN 406 (616)
Q Consensus 399 ~A~~~~~~ 406 (616)
+|...+++
T Consensus 233 ~A~atl~q 240 (262)
T COG1729 233 EACATLQQ 240 (262)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.11 E-value=13 Score=36.40 Aligned_cols=18 Identities=6% Similarity=-0.403 Sum_probs=11.5
Q ss_pred HHHHcCCcHHHHHHHHHH
Q 007134 422 ACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~ 439 (616)
.+.+.++++.|.+.++..
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 445666777777776654
|
It is also involved in sporulation []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.43 Score=42.65 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=68.1
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCC-----cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 390 LLGRAGLVKQAYEYIQNML--MPP-----NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~--~~p-----d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
-+.+.|++++|..-|.+.. .++ -.+.|..-..+..+.+..+.|+....++++++|.+..+....+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3567777777777765541 111 234555666677889999999999999999999877777788889999999
Q ss_pred chHHHHHHHHHhhCC
Q 007134 463 WLNVQEVRRTMVKER 477 (616)
Q Consensus 463 ~~~a~~~~~~m~~~~ 477 (616)
+++|..-++++.+.+
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987754
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.2 Score=36.93 Aligned_cols=90 Identities=13% Similarity=0.054 Sum_probs=57.2
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCC--cHHHHHHHHHHHHHcC
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----LMPP--NAVIWRTLLGACTIHG 427 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--d~~~~~~ll~a~~~~g 427 (616)
+.+..|+++.|++.|.+... -.+.....||.-..++.-+|+.++|++-+++. +-+- --..|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34566777777777776654 23344666777777777777777777666554 1110 1123444445678888
Q ss_pred CcHHHHHHHHHHHhcCCC
Q 007134 428 HSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 428 ~~~~a~~~~~~~~~~~p~ 445 (616)
+.+.|..-|+.+.+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888888766644
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.43 E-value=17 Score=36.64 Aligned_cols=149 Identities=9% Similarity=-0.086 Sum_probs=75.2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC---CHHHHHHHHHHHhcCCChHHHHHHHHHhHHh-hCCCCChhh
Q 007134 308 RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP---GEVTFVGVLYACSHCGMVDEGFSYFKRMKDE-YGIMPKIEH 383 (616)
Q Consensus 308 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 383 (616)
....+|..+...+.+.|+++.|...+.++...+..+ +......-....-..|+-.+|...++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345677888888888888888888888877643111 1122222333444577778888877777652 111111111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCcHHHHHHHHHHHHHc------CCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 384 FGCMVDLLGRAGLVKQAYEY-IQNMLMPPNAVIWRTLLGACTIH------GHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~-~~~m~~~pd~~~~~~ll~a~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...++++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112333333333333 778889999999999998866666666555
Q ss_pred hH
Q 007134 457 YA 458 (616)
Q Consensus 457 y~ 458 (616)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 43
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=91.40 E-value=2.4 Score=37.07 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=35.1
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
+-+.|++++|..+|+-+...+. -|..-+..+...+-..+++++|...|......+. .|....--...+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3445555555555555544321 1111222222333334455555555544433321 1222222334444445555555
Q ss_pred HHHHHhc
Q 007134 299 QRVFREM 305 (616)
Q Consensus 299 ~~~f~~m 305 (616)
...|...
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=16 Score=35.65 Aligned_cols=133 Identities=13% Similarity=0.004 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHh
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNG-FGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 356 (616)
+..+-...+.++++.|+.+....+..-+..+|...-..-+.++.+.+ ....+...+..+.. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44455555555555555333333333333344433333344444332 13344444444443 234444455555555
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHH
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLG 421 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~ 421 (616)
+.|+. .+...+-...+. ++ .....+.+++..|.. +|...+.++- -.||..+-...+.
T Consensus 218 ~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred ccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHH
Confidence 55553 333333333221 22 123444555555553 3444444442 2344444333333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.74 E-value=15 Score=34.71 Aligned_cols=177 Identities=16% Similarity=0.086 Sum_probs=94.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---h---hhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCHHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRN---A---VSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEVTFVGV 351 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~l 351 (616)
...|+--++ -.+.|++++|.+.|+.+..+. . .+--.++-++-+.+++++|+..+++.... +-.|| .-|...
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Y 112 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYY 112 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHH
Confidence 344443333 345677777877777776431 1 22333455666677777777777777654 22333 233333
Q ss_pred HHHHhc-------CCCh---HHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHH--HHHHH
Q 007134 352 LYACSH-------CGMV---DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAV--IWRTL 419 (616)
Q Consensus 352 l~a~~~-------~g~~---~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~--~~~~l 419 (616)
|.+.+. ..+. ..|..-|+.+..++ |+.. -..+|..-+.... |.. -=..+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHH
Confidence 333332 1222 22333333333322 2211 0011111000000 000 01234
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCC---chhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSG---DYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..-|.+.|.+.-|..-++++++.-|+.+. .+..+..+|...|..++|.+.-+-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 45678888898999999999887666443 3456778888999999999888777543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.29 Score=47.28 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=78.6
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CcHHHHHHHHHHHHHcCCc
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMVDLLGRAGLVKQAYEYIQNML-MP-PNAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-pd~~~~~~ll~a~~~~g~~ 429 (616)
+-|.++|.+++|++.|.... ...| +.+.+..-..+|.+..++..|+.-..... +. .-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 35889999999999998776 3446 78888888889999999988876665542 11 1234566666666778899
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHH
Q 007134 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV 469 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~ 469 (616)
.+|.+-++.+++++|++.. |-..|+......|+.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 9999999999999998433 44444444444444433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.41 E-value=15 Score=34.30 Aligned_cols=83 Identities=13% Similarity=-0.013 Sum_probs=36.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-------CCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhc----CCCCCCchhhhh
Q 007134 387 MVDLLGRAGLVKQAYEYIQNML-------MPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQL----EPKHSGDYVLLS 454 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~-------~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~ 454 (616)
....|.+..++++|-..|.+-+ --|+. ..+.+.|-.+....|+..|+..++.-.++ .|++..+...|.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 3344555555655554443331 11222 23334444444455666666666654322 222233333333
Q ss_pred HHhHhcccchHHHHHH
Q 007134 455 NLYAYEQRWLNVQEVR 470 (616)
Q Consensus 455 ~~y~~~g~~~~a~~~~ 470 (616)
.+| ..|+.+++.++.
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 333 345555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.35 E-value=9.8 Score=31.91 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
.+.-+..+...|+-++-.++++++.+. -.|+......+..||.+.|+..++.+++.++.++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344556667777777777777776642 3566666677777777888877777777777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.13 E-value=5.1 Score=41.37 Aligned_cols=59 Identities=19% Similarity=0.009 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCC--CCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPK--HSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..|...+.+.|+.++|.+.++.+++..|. +......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555666677777777777777665554 233445666677777777777777666543
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.13 E-value=2.5 Score=41.03 Aligned_cols=156 Identities=9% Similarity=-0.040 Sum_probs=113.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHH----HHHHHHHhcCCH
Q 007134 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG----CMVDLLGRAGLV 397 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~----~li~~~~~~g~~ 397 (616)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...||...|. .+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888998999998875 455667777778899999999999999998875 3356654443 334456689999
Q ss_pred HHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----CCCchhhhhHHhHhcccchHHHHHHH
Q 007134 398 KQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK----HSGDYVLLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 398 ~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 471 (616)
++|++.-++. .+.| |.-.-.++...+-..|+..++.+...+--..-.. -...|-..+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999876 4555 6666677778888999999999987765322211 12345566667778899999999997
Q ss_pred HHhhCCCcc
Q 007134 472 TMVKERVKK 480 (616)
Q Consensus 472 ~m~~~~~~~ 480 (616)
.=.-+.+.+
T Consensus 272 ~ei~k~l~k 280 (491)
T KOG2610|consen 272 REIWKRLEK 280 (491)
T ss_pred HHHHHHhhc
Confidence 654333433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.02 Score=49.80 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=51.6
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHH
Q 007134 250 LFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEA 329 (616)
Q Consensus 250 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 329 (616)
++..+.+.+.++....+++.+.+.+...+..+.+.++..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555666667777777777666556677778888888887766666666663222 2234455556666666666
Q ss_pred HHHHHHHH
Q 007134 330 LELFKEME 337 (616)
Q Consensus 330 ~~l~~~m~ 337 (616)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 66665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.04 E-value=11 Score=37.11 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhcCCC--hHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 007134 327 KEALELFKEMEIGGFVPGE--VTFVGVLYACSHCGM--VDEGFSYFKRMKDEYGIMPKIEHFGCMV 388 (616)
Q Consensus 327 ~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li 388 (616)
+.+..+|+.+.+.|+..+. ...+.+|..+..... +..+..+++.+.+. ++++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 4566677777776665543 333344433332222 34677777777765 7777777766554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.97 E-value=25 Score=36.00 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHH-HHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYG-IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIW-RTLLGA 422 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~-~~ll~a 422 (616)
..|...+++..+..-++.|..+|-...+. + +.+++..+++++.-+ ..|+..-|..+|+-- ..-||...| .-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44566777777888889999999988776 5 567888888888755 467778888888643 344555433 445555
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCC--CCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 423 CTIHGHSAIAEIARSTLLQLEPK--HSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+...++-+.|..+|+..++.-.+ -...|..++.--..-|+...+..+-+.|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 66777888888888865422111 133555566555666777666666666554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=89.66 E-value=22 Score=35.94 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC----CCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK----HSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+|..+...+++.|.++.|...+.++.+.++. .+.....-+......|+.++|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999875532 345566678888899999999999888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.58 Score=28.61 Aligned_cols=31 Identities=19% Similarity=0.078 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888887774
|
... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.32 E-value=33 Score=36.49 Aligned_cols=379 Identities=14% Similarity=0.085 Sum_probs=211.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--CChh-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007134 76 PDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--PNIF-TWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152 (616)
Q Consensus 76 ~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~ 152 (616)
...|+.||.---... +.+.++.+++.+.. |... -|-.....=.+.|..+.+.++|++-++. ++-+...|...+.-
T Consensus 45 f~~wt~li~~~~~~~-~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIE-DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred ccchHHHHhccCchh-HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 345666664333333 56667777776653 4333 3555555556778888999999988763 55455555554444
Q ss_pred HH-cCCCcHHHHHHHHHHHHh-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh---C----
Q 007134 153 IS-KLADVRMGEQTHSVAIRN-GFE-SLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS---N---- 222 (616)
Q Consensus 153 ~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~---- 222 (616)
+. ..|+.+..+..|+.++.. |.. .....|...|.--..+++......+++++.+-....++..-.-|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 33 456777788888887764 321 2344567777777778889999999998877555555555544443 2
Q ss_pred --CCccHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHh-cCchHHHH-------HHHH-----------------HHH
Q 007134 223 --GKPNEALTLFREMASE----GVEPDGYTMVSLFSACAE-LGALALGR-------RAHT-----------------YVW 271 (616)
Q Consensus 223 --g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~-~~~~~~a~-------~~~~-----------------~~~ 271 (616)
...+++.++=...... -..+.......-+.-... .+.++... .++. .-+
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhc
Confidence 2233444433322221 001111111111111100 01111111 1111 111
Q ss_pred HhC-------CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 272 KVG-------LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN---AVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 272 ~~g-------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
++. ..++..+|..-++.-.+.|+.+.+.-+|++...+- ...|--.+.-.-..|+.+-|-.++..-.+--+
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~ 362 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV 362 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence 110 01245566666777777777777777777765441 22343333333334776666666555443222
Q ss_pred --cCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCcHH
Q 007134 342 --VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAY---EYIQNM-LMPPNAV 414 (616)
Q Consensus 342 --~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~pd~~ 414 (616)
.|....+.+.+ +-..|+.+.|..+++.+.+++ |+ +..-..-+....+.|..+.+. +++... ..+-+..
T Consensus 363 k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 363 KKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred CCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 23333333333 445789999999999998753 55 333344556677888888887 444433 1222322
Q ss_pred HHHHHHH-----HHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 415 IWRTLLG-----ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 415 ~~~~ll~-----a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
+...+.- -+...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 3332222 2355678899999999999999988877887777766554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.15 E-value=2.9 Score=40.33 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCcCCHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEI-----GGFVPGEVTFVG 350 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 350 (616)
..++..++..+..+|+.+.+.+.+++.... |...|..+|.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456778888999999999999999887653 677899999999999999999999998865 478887766655
Q ss_pred HHHH
Q 007134 351 VLYA 354 (616)
Q Consensus 351 ll~a 354 (616)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.82 E-value=3 Score=40.20 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHH-----CCCCCCHHHHHH
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMAS-----EGVEPDGYTMVS 249 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 249 (616)
..++..++..+..+|+++.+.+.+++..+ -|...|..++.+|.+.|+...|+..|+++.. .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34677889999999999999999998765 3677899999999999999999999998865 467776665544
Q ss_pred HHHH
Q 007134 250 LFSA 253 (616)
Q Consensus 250 ll~a 253 (616)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.49 E-value=13 Score=40.83 Aligned_cols=179 Identities=10% Similarity=0.031 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNV--NVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 323 (616)
+....|....+...++.|..+-. ..+.+++. .+.....+-+.+.|+.++|...|-+...--.. ..+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCH
Confidence 34455566666666666655432 23333221 22233344455677888777766554322111 1245555555
Q ss_pred CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 007134 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (616)
.+..+-..+++.+.+.|+. +...-..||.+|.+.++.+.-.++.+.-.+ |.. ..-....+..+.+.+-+++|.-+
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 6666666777777777754 333445677788888887776665554321 211 11133456667777777777777
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 007134 404 IQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 404 ~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~ 439 (616)
-.+... +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 666543 223333332 4556777777776643
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.39 E-value=7.9 Score=34.11 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRK 307 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~ 307 (616)
.-.+|.-+-.|.|++.+|.+.|..+..
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 334444445555666666665555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.82 E-value=10 Score=37.22 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHCCCCCCcchHHH
Q 007134 126 LAVELYSKMHVSGIKPDTHTYPF 148 (616)
Q Consensus 126 ~A~~l~~~m~~~g~~pd~~t~~~ 148 (616)
+.+.+++.|.+.|.+-+.++|.+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 44455566666666655555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.81 E-value=0.99 Score=28.21 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHH
Q 007134 110 TWNTMIRGYAESANPLLAVELYSKMH 135 (616)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~l~~~m~ 135 (616)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.80 E-value=11 Score=37.30 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH-------hhcCCC--ChhHHHHHHHHHHhCCCccHHHHHHHHHHHC-CCCC---CHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVF-------ELMSER--DLVAWNSVINGFASNGKPNEALTLFREMASE-GVEP---DGYT 246 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f-------~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~t 246 (616)
++..+.++.++.|.+++++..- .+..+. -..+|-.+..++-+.-++.+++.+-+.-... |..| ....
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4555666666666666654321 111111 1235556666666666666666665443321 2222 1123
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCChh---
Q 007134 247 MVSLFSACAELGALALGRRAHTYVWKVGL-----SDNVNVNNALLDFYSKCGIIIAAQRVFREM-------RKRNAV--- 311 (616)
Q Consensus 247 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~y~~~g~~~~A~~~f~~m-------~~~~~~--- 311 (616)
..++..|....+.++++.+.|+.+.+... .....++-+|...|.+..++++|.-+..+. .-.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34566777778888888888887766321 223577888888999988888876544432 222322
Q ss_pred ---hHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 312 ---SWSTLVVGLAVNGFGKEALELFKEMEI----GGFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 312 ---~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+.-.|..++...|....|.+.-++..+ .|-+|-. .....+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 223355667777877777777766543 3433322 234455566777888888777666653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.79 E-value=24 Score=33.08 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHH
Q 007134 212 WNSVINGFASNGKPNEALTLFREM 235 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m 235 (616)
|+--+..|..+|.++-|-..+++.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHH
Confidence 444555666666666555554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.60 E-value=0.86 Score=28.49 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 416 WRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 416 ~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566666666666666666643
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.01 E-value=28 Score=33.02 Aligned_cols=208 Identities=13% Similarity=0.173 Sum_probs=107.6
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-----CCCCchhHH
Q 007134 213 NSVINGFASNGKPNEALTLFREMAS---EGVE--PDGYTMVSLFSACAELGALALGRRAHTYVWKV-----GLSDNVNVN 282 (616)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~ 282 (616)
-.+|..+.+.|++++.+..|.+|+. ..+. -.....++++.-.+...+.+.-..+++.-.+. +-..--.+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 3455555566666666655555532 1111 12334555555555455555444444432221 111112233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCHH
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKR---------------NAVSWSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGEV 346 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ 346 (616)
+-|...|...|.+.+-.+++.++... -...|..=|..|....+-.+...++++...- ...|..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP- 227 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP- 227 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-
Confidence 45666777777777777777666421 1235666677888777777777777766432 223433
Q ss_pred HHHHHHHHHh-----cCCChHHHHHHHHHhHHhhCCC--CChh---hHHHHHHHHHhcCCHHHHHHHHHhC---C--CCC
Q 007134 347 TFVGVLYACS-----HCGMVDEGFSYFKRMKDEYGIM--PKIE---HFGCMVDLLGRAGLVKQAYEYIQNM---L--MPP 411 (616)
Q Consensus 347 t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~--p~~~---~~~~li~~~~~~g~~~~A~~~~~~m---~--~~p 411 (616)
....+|+-|. +.|.+++|..-|-+.-+.|.-. |... -|..|..++.+.|- .-|+.- | -.|
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDP 302 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCH
Confidence 3345566554 4677887765444443433222 2222 24555666666651 122111 2 234
Q ss_pred cHHHHHHHHHHHHHc
Q 007134 412 NAVIWRTLLGACTIH 426 (616)
Q Consensus 412 d~~~~~~ll~a~~~~ 426 (616)
.......|+.+|..+
T Consensus 303 EIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHHHHHHHhcc
Confidence 556777888887654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.95 E-value=18 Score=31.62 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=50.6
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~ 430 (616)
-.+.++.+++..+++.+.- +.|. ..++. .-.+.+.|++.+|..+|+++. -.|....-.+|+..|.....-.
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 3456677777777777753 3344 33333 234667788888888888774 2344444456666665555545
Q ss_pred HHHHHHHHHHhcCCC
Q 007134 431 IAEIARSTLLQLEPK 445 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~ 445 (616)
.-....+++++.+++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 555556666665553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.64 E-value=2.9 Score=36.45 Aligned_cols=69 Identities=14% Similarity=-0.019 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHhCC-CCCcHHHHHHH-HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 393 RAGLVKQAYEYIQNML-MPPNAVIWRTL-LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 393 ~~g~~~~A~~~~~~m~-~~pd~~~~~~l-l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
+.++.+++..++..+. .+|.......+ ..-+...|++.+|.++++.+.+-.|..+..-..++.++...|
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 4455555555555552 33432221111 122345555555555555554444443333334444443333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.44 E-value=7.5 Score=34.95 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 280 NVNNALLDFYSKCGIIIAAQRVFREMRKRN------AVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
..+..+.+.|.+.|+++.|.+.|.++.+.. ...+-.+|......+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455677788888888888888888877542 23455667777777787777777766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=86.22 E-value=35 Score=33.30 Aligned_cols=17 Identities=18% Similarity=0.009 Sum_probs=11.1
Q ss_pred HHHHcCCHHHHHHHHHH
Q 007134 319 GLAVNGFGKEALELFKE 335 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~ 335 (616)
.+.+.+++++|.+.|+-
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 34456777777777763
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.07 E-value=37 Score=33.43 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=95.4
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKV---GLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
+|+..+|-..++++++. .+.|...+...=.+|...|+.+.-+..++++... +++....+...+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 56777777777777664 4556667777777888888888877777777654 2333344444555566788999999
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC---C-CcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 299 QRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIG---G-FVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 299 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
++.-++..+- |..+-.+....+-.+|+..++.++..+-... + +... ..|-...-.+...+.++.|+.+|+.-
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlas-HNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLAS-HNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHh-hhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9888877654 4445556667777788999998887664321 0 0011 11111222334558889999888764
Q ss_pred H
Q 007134 372 K 372 (616)
Q Consensus 372 ~ 372 (616)
.
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.89 E-value=1.1e+02 Score=38.59 Aligned_cols=310 Identities=12% Similarity=0.030 Sum_probs=166.2
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhHHHHHHHHHHhCCCcc
Q 007134 150 LKAISKLADVRMGEQTHSVAIRNGF--ESLVFVQNSLVHMYAAFGHVKDACKVFEL-MSERDLVAWNSVINGFASNGKPN 226 (616)
Q Consensus 150 l~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~ 226 (616)
..+--+.+.+..|...++.-..... ......+..+...|+.-+++|...-+... ...++ ...-|.-....|++.
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHH
Confidence 3344556677777777766311000 11223344455588888888887776663 33333 233455566789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhc
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVN-NALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A~~~f~~m 305 (616)
.|...|+.+.+.+ ++...+++.++......+.++...-..+-.... ..+....+ +.=+.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 9999999998764 333667887777777777777666544433332 22233333 333444456677776666655
Q ss_pred CCCChhhHHHH-H-HHHHHcC--CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHH----------h
Q 007134 306 RKRNAVSWSTL-V-VGLAVNG--FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR----------M 371 (616)
Q Consensus 306 ~~~~~~~~~~l-i-~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~----------m 371 (616)
.++..+|.+. + ..+.+.. +.-.-.++.+.+++.-+.| +.+|+..|.+..+.++.-. .
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655 2 2222221 1111122333333221111 2223332222222111111 1
Q ss_pred HHhhCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCc-----HHHHHHHHHHHHHcCCcHHHHHHH
Q 007134 372 KDEYGIMPKI------EHFGCMVDLLGRAGLVKQAYEYIQNM----LMPPN-----AVIWRTLLGACTIHGHSAIAEIAR 436 (616)
Q Consensus 372 ~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m----~~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~ 436 (616)
....+..++. ..|..-+..=....+..+-+--+++. ..+|+ ..+|-.....++..|.++.|....
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1111222321 12222222111111122221111111 12322 368889999999999999999988
Q ss_pred HHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 437 STLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 437 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
-.+.+.. -+..+.-.+......|+-..|..+++...+..
T Consensus 1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8876655 36788899999999999999999998887654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.84 E-value=30 Score=32.23 Aligned_cols=61 Identities=7% Similarity=-0.068 Sum_probs=33.4
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhCC-----CCCcHHHHHHHHH---HHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 386 CMVDLLGRA-GLVKQAYEYIQNML-----MPPNAVIWRTLLG---ACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 386 ~li~~~~~~-g~~~~A~~~~~~m~-----~~pd~~~~~~ll~---a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
.+...|..- .++++|+..++..+ -+.+...-..++. --...+++.+|+.+|+++.....++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444433 45666666665552 1222223333333 2367788999999999886544443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.63 E-value=20 Score=32.25 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh------h
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE--VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI------E 382 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~ 382 (616)
..+..+..-|.+.|+.++|++.|.++.+....|.. ..+..+|..+...+++..+.....+.........|. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35677889999999999999999999887555554 446677888888999999988888776531111111 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.|..+. +...+++.+|-+.|-+.
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 233332 34578899998888665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.47 E-value=5.2 Score=31.70 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 345666677777778999999999999999999999999999999988544 33447777764
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.27 E-value=1.6 Score=26.93 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=21.0
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 007134 167 SVAIRNGFESLVFVQNSLVHMYAAFGHVKDAC 198 (616)
Q Consensus 167 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 198 (616)
+++++.. |.+..+|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 556777777777788888777775
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.99 E-value=4.5 Score=34.65 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=40.7
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
..++.+++..++..+.-+.|+.+..-..-+.++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46777778888877777788877777777778888888888888888776554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.98 E-value=5.7 Score=31.14 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
+.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456667777777778899999999999999999999999999999886433 24456766653
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.19 E-value=2.4 Score=25.78 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.10 E-value=73 Score=35.17 Aligned_cols=60 Identities=15% Similarity=0.102 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCc-------hHHHHHHHHHHHCC
Q 007134 77 DLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANP-------LLAVELYSKMHVSG 138 (616)
Q Consensus 77 ~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~g 138 (616)
-+| ++|-.+-+|| .+++|.++-.... .+....+-..+..|+.+.+. ++...-|++..+..
T Consensus 113 p~W-a~Iyy~LR~G-~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIW-ALIYYCLRCG-DYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHH-HHHHHHHTTT--HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccH-HHHHHHHhcC-CHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 355 4566666898 8999999983322 34445667777777665332 24455566655443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.07 E-value=35 Score=31.45 Aligned_cols=160 Identities=13% Similarity=0.005 Sum_probs=82.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 388 (616)
+..||-+.--+...|+++.|.+.|+...+.. |. ..++..-.-++.-.|++..|.+-|...-+.-.-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4567777777777778888888877776643 32 22222222234456777777665554433212222233333322
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-------CCchhhhhHHhHhcc
Q 007134 389 DLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH-------SGDYVLLSNLYAYEQ 461 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g 461 (616)
.+.=++.+|..-+.+--...|..-|...|-.+---.-.+ +.+++++.....++ ..+|.-|+.-|...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 223345555443322212234445554443332211111 12233332222221 346778888889999
Q ss_pred cchHHHHHHHHHhhC
Q 007134 462 RWLNVQEVRRTMVKE 476 (616)
Q Consensus 462 ~~~~a~~~~~~m~~~ 476 (616)
..++|..+|+.....
T Consensus 252 ~~~~A~~LfKLaian 266 (297)
T COG4785 252 DLDEATALFKLAVAN 266 (297)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999999877653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.79 E-value=3.6 Score=26.99 Aligned_cols=27 Identities=22% Similarity=0.275 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
+|..+...|...|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555666666666666666666655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.79 E-value=31 Score=30.59 Aligned_cols=87 Identities=16% Similarity=0.133 Sum_probs=51.5
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChh--hH---HHH--HHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC
Q 007134 288 FYSKCGIIIAAQRVFREMRKRNAV--SW---STL--VVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM 360 (616)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~~~~--~~---~~l--i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 360 (616)
.....|+...|...|+++...+.+ .. ..| .-.+..+|-+++.....+.+-..+-.--...-..|.-+-.+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 345567777777777766532211 11 111 12345677777777777766655433333444455566677888
Q ss_pred hHHHHHHHHHhHHh
Q 007134 361 VDEGFSYFKRMKDE 374 (616)
Q Consensus 361 ~~~a~~~~~~m~~~ 374 (616)
+..|.+.|..+..+
T Consensus 183 ~a~A~~~F~qia~D 196 (221)
T COG4649 183 FAKAKSWFVQIAND 196 (221)
T ss_pred hHHHHHHHHHHHcc
Confidence 88888888887765
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.75 E-value=28 Score=30.03 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007134 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER 207 (616)
Q Consensus 156 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 207 (616)
.++++.+..+++.+.-.. +....+-..-.-.+...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444555555554443321 111122222233345566666666666666543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.70 E-value=50 Score=32.24 Aligned_cols=75 Identities=7% Similarity=-0.026 Sum_probs=40.5
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
.++..+-...+.++++.|+....-.+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3455555666666666666433333333333333 233566677777774 577777777653 34555544445444
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.45 E-value=22 Score=28.20 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHC
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE 238 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 238 (616)
.++|.-|-+.+...+- ....+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4556555555554431 233444444556788999999999999998899999988765 3567777777777777776
Q ss_pred CCCCCHHHHH
Q 007134 239 GVEPDGYTMV 248 (616)
Q Consensus 239 g~~p~~~t~~ 248 (616)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 45555553
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.48 E-value=38 Score=30.01 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLL 150 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 150 (616)
++...|..+|..+.+.|++. .+.++++.++-+|.......+
T Consensus 27 ~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHH
Confidence 44445666666666665543 234444455555555544444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.37 E-value=96 Score=34.61 Aligned_cols=76 Identities=7% Similarity=-0.012 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-cCCCCCCchhhhhHHhHhccc
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQ-LEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~y~~~g~ 462 (616)
-++..+.+..+.+.+..+.+..+-. |+..|..+++.+.+.+.++.-.+...++++ +....--.-..+.+++++.+.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 3555677778888888888887743 778888899988888877766666665542 111122223455666666553
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.27 E-value=14 Score=35.78 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=72.0
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC
Q 007134 273 VGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---------NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343 (616)
Q Consensus 273 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (616)
.|.+....+...++..-....+++++...+-++... ...+|-.++ ..-++++++.++..=+.-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhcccc
Confidence 355556666666777667777888888877776532 233333332 3346778888888888889999
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
|..|++.++..+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988887776653
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.01 E-value=7.5 Score=38.03 Aligned_cols=86 Identities=12% Similarity=0.011 Sum_probs=59.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC
Q 007134 317 VVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 395 (616)
..-|.++|.+++|++.|.+-+. +.| |.+++..-..+|.+...+..|+.-...... .| ...+.+|.|.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 4569999999999999998776 566 889999999999999888877765555543 11 23445555554
Q ss_pred -------CHHHHHHHHHhC-CCCCcH
Q 007134 396 -------LVKQAYEYIQNM-LMPPNA 413 (616)
Q Consensus 396 -------~~~~A~~~~~~m-~~~pd~ 413 (616)
...+|.+-++.. .++|+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 444544444333 366763
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.98 E-value=23 Score=37.63 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHH
Q 007134 191 FGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT 230 (616)
Q Consensus 191 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (616)
.|+++.|..++..++++ .-+.++.-+-+.|..++|++
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~ 635 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE 635 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhh
Confidence 35555555555444421 23334444445555555544
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=80.46 E-value=19 Score=30.33 Aligned_cols=62 Identities=10% Similarity=-0.021 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHc---CCcHHHHHHHHHHHh-cCCCCCCc-hhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIH---GHSAIAEIARSTLLQ-LEPKHSGD-YVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~---g~~~~a~~~~~~~~~-~~p~~~~~-~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+--.+..++... .++.+++.+++.+++ -.|..... ...|+-.+.+.|+++.+.++.+...+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444433 356778888888876 44443333 33567778888899999888887765
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.44 E-value=1.2e+02 Score=35.26 Aligned_cols=222 Identities=10% Similarity=-0.051 Sum_probs=99.1
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc
Q 007134 199 KVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278 (616)
Q Consensus 199 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (616)
.+...+..+|...--..+..+.+.+. .+++..+.+.... +|...-...+.++...+........+..+.+ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 34444445555555555555555554 3344444444432 2333333444444333221111122222222 134
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (616)
..+-.+.++.+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHh
Confidence 45555555555443311 12234445555565555555555555544322 112221 33444444444555554
Q ss_pred CChHH-HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHH
Q 007134 359 GMVDE-GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437 (616)
Q Consensus 359 g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 437 (616)
+..+. +...+..+.++ +|...-...+.++++.|..+.+...+..+...+|..+-...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~D----~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTGD----PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhcC----CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 44332 23333344332 55666666667777776654443333333334555555555556655554 33444444
Q ss_pred HHH
Q 007134 438 TLL 440 (616)
Q Consensus 438 ~~~ 440 (616)
.++
T Consensus 845 ~~L 847 (897)
T PRK13800 845 EAL 847 (897)
T ss_pred HHh
Confidence 444
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.29 E-value=73 Score=32.58 Aligned_cols=180 Identities=18% Similarity=0.179 Sum_probs=114.9
Q ss_pred cCCHHHHHHHHHhcCCC----ChhhHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCcCC----HHHHHHHHHHHhcCCChH
Q 007134 292 CGIIIAAQRVFREMRKR----NAVSWSTLVVGLA-VNGFGKEALELFKEMEIGGFVPG----EVTFVGVLYACSHCGMVD 362 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~ 362 (616)
.|+.++|.+.+..+... ....+-+|+.+-. ...++.+|+++|++..-. -|. +....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57778888888777643 3445666665544 456789999999987652 343 233444445567889999
Q ss_pred HHHHHHHHhHHhhCCCCChhhH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 007134 363 EGFSYFKRMKDEYGIMPKIEHF-GCMVDLLGRA---GLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARST 438 (616)
Q Consensus 363 ~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~---g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~ 438 (616)
++..+-.+...+|.-.|-...| ..++..+.+. ...+.-.+++..|.-.--..+|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888777777766555553333 2333333333 33445556666664222346888888888999999999999999
Q ss_pred HHhcCCCCCCchhhhhHHhHh-----cccchHHHHHHHHHh
Q 007134 439 LLQLEPKHSGDYVLLSNLYAY-----EQRWLNVQEVRRTMV 474 (616)
Q Consensus 439 ~~~~~p~~~~~~~~l~~~y~~-----~g~~~~a~~~~~~m~ 474 (616)
+..+... ...-...+.+|.. ..+.+++.+.++.+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9887744 4444455666643 345666666665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 616 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 3e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 7e-14
Identities = 94/610 (15%), Positives = 191/610 (31%), Gaps = 126/610 (20%)
Query: 52 CASSKHKLKQVHAFS---IRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNI 108
C + K + S I H + + G ++ + LS V N
Sbjct: 35 CKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFWTL-LSKQEEMVQKFVEEVLRIN- 90
Query: 109 FTW------------NTMIRGYAESANPLL-AVELYSKMHVSGIKPDTHTYPFLLKAISK 155
+ + + M R Y E + L ++++K +VS ++P K
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-----------YLK 139
Query: 156 LADVRMGEQTHSVAIRNGFESLVFVQNSLVH-MYAAFGH---VKDACKVFELMSERDL-V 210
L R L +N L+ + G D C +++ + D +
Sbjct: 140 L--------------RQALLELRPAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 211 AWNSVINGFASNGKPNEAL----TLFREMASEGVE-PDGY--TMVSLFSACAELGALALG 263
W +N + P L L ++ D + + S AEL L L
Sbjct: 185 FW---LN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LK 239
Query: 264 RRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323
+ + V L NV A F C I++ R + +A + + + +
Sbjct: 240 SKPYENCLLV-L-LNVQNAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSM 296
Query: 324 GFGK-EALELFK---EMEIGGFVPGEVTFVGVLYACSHCG-MVDEG---FSYFKRMKDEY 375
E L + +P EV S + +G + +K + +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQD-LPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCD- 353
Query: 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYI----QNMLMPPN--AVIWRTLLGACTIHGHS 429
+ IE +++L ++ ++ + + +P ++IW ++ + +
Sbjct: 354 KLTTIIESS---LNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---V 406
Query: 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK--ERVKKTPGHSLV 487
+ ++ + +L++ +PK + S + + N + R++V K L+
Sbjct: 407 VVNKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 488 --ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYVPRTENVFADIEEEEKEDAL 545
L + H H E +++ L VF D
Sbjct: 466 PPYLDQYFYSHIG----H------HLKNIEHPERMTL------FRMVFLD---------F 500
Query: 546 SYHSEKIAIAFMLVNTAPGTPVRVVKNLRVCADCHLAIKLISKVYSREIVVRDRSRFHHF 605
+ +KI A G+ + ++ L+ + I Y R +V F
Sbjct: 501 RFLEQKI-RHDSTAWNASGSILNTLQQLKFYKP-Y--ICDNDPKYER--LVNAILDFLPK 554
Query: 606 KDGHCSCRDY 615
+ + C Y
Sbjct: 555 IEENLICSKY 564
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.0 bits (159), Expect = 2e-11
Identities = 17/164 (10%), Positives = 42/164 (25%), Gaps = 7/164 (4%)
Query: 102 HVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRM 161
Q ++ + +A L + P LL+ + +
Sbjct: 51 PFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDV 110
Query: 162 GEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER-------DLVAWNS 214
+ + + + A + + + L +N+
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 215 VINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG 258
V+ G+A G E + + + G+ PD + +
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 1e-07
Identities = 26/284 (9%), Positives = 76/284 (26%), Gaps = 10/284 (3%)
Query: 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG----ALALGRRAHTY 269
++ + + + + +++ F C A L H
Sbjct: 97 RLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ 156
Query: 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR----NAVSWSTLVVGLAVNGF 325
+ +++ NA++ +++ G V ++ + +S++ + +
Sbjct: 157 -RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 326 GKEALE-LFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384
+E ++M G + +L ++ + P +
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 385 GCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444
+ D+ + G V ++ + + A + S S ++
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHAR 335
Query: 445 KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVE 488
K + R + + R P L++
Sbjct: 336 KTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLD 379
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.5 bits (124), Expect = 3e-07
Identities = 23/195 (11%), Positives = 53/195 (27%), Gaps = 7/195 (3%)
Query: 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNAL 285
A L P + L +L + + + LS A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 286 LDFYSKCGIIIAAQRVFREMRKR-------NAVSWSTLVVGLAVNGFGKEALELFKEMEI 338
+ A + + ++ +++G A G KE + + ++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 339 GGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398
G P +++ L + G+ + ++ RA ++K
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 399 QAYEYIQNMLMPPNA 413
++ +PP
Sbjct: 254 AVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.4 bits (116), Expect = 4e-06
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Query: 97 HNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKL 156
H + + +N ++ G+A V + + +G+ PD +Y L+ + +
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213
Query: 157 -ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205
D E+ + G + L+ +K KV S
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 616 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.47 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.45 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.45 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.45 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.27 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.26 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.25 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.0 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.96 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.83 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.73 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.69 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.67 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.67 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.67 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.64 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.63 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.6 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.57 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.56 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.53 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.53 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.52 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.51 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.51 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.45 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.41 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.41 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.4 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.39 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.21 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.21 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.17 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.16 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.16 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.14 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.14 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.13 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.12 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.12 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.09 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.05 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.05 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.04 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.02 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.02 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.99 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.99 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.97 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.96 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.95 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.92 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.9 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.87 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.86 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.84 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.83 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.81 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.81 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.8 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.78 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.76 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.76 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.7 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.67 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.66 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.6 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.55 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.5 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.49 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.45 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.23 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.23 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.17 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.17 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.05 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.04 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.02 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.99 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.98 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.93 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.69 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.53 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.52 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.46 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.39 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.36 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.35 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.32 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.28 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.97 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.62 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.35 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.13 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.11 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.86 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.68 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.46 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.38 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 91.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.94 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.87 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.3 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.99 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.96 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.71 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.47 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 87.29 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.59 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.96 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.82 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 83.52 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.62 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.08 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.03 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.51 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 81.49 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=335.26 Aligned_cols=424 Identities=9% Similarity=-0.045 Sum_probs=373.2
Q ss_pred HhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhC--CCCChhHHHHHHHHH
Q 007134 43 RKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHV--QDPNIFTWNTMIRGY 118 (616)
Q Consensus 43 ~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m--~~~~~~~~~~li~~~ 118 (616)
..+..+++.+. +..+.+.+++..+++.. | +...++.++.+|.+.| ++++|+.+|+.+ ..+++.+|+.++.+|
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDIT--G-NPNDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C-CHHHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHhhC--C-CchHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 44556666665 57889999999998654 3 5578889999999999 999999999998 468999999999999
Q ss_pred HhcCCchHHHHHHHHHHHC---------------CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHH---
Q 007134 119 AESANPLLAVELYSKMHVS---------------GIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFV--- 180 (616)
Q Consensus 119 ~~~g~~~~A~~l~~~m~~~---------------g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--- 180 (616)
.+.|++++|+++|+++... |.+++..++..++.++.+.|++++|.++|+.+++.+. .+...
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHH
Confidence 9999999999999853221 2234577899999999999999999999999998752 23333
Q ss_pred -----------------------------------HHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCC
Q 007134 181 -----------------------------------QNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWNSVINGFASNG 223 (616)
Q Consensus 181 -----------------------------------~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 223 (616)
++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 33336677889999999999999987 79999999999999999
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 007134 224 KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFR 303 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 303 (616)
++++|+++|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999998765 3477889999999999999999999999998764 6678999999999999999999999999
Q ss_pred hcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC
Q 007134 304 EMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380 (616)
Q Consensus 304 ~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 380 (616)
++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+.+.+. .+.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 875 3478899999999999999999999999998864 347789999999999999999999999999873 3456
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchh
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 451 (616)
..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|++++|...++++++.+|+++..|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 889999999999999999999999888 45787 789999999999999999999999999999999999999
Q ss_pred hhhHHhHhcccchHHHHHHHHHhhC
Q 007134 452 LLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 452 ~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
.++.+|.+.|++++|.+.++++.+.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=315.69 Aligned_cols=422 Identities=11% Similarity=-0.006 Sum_probs=358.6
Q ss_pred hHHHHHhhCCCCCCCCcchhhHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHH
Q 007134 22 RVKSLYHSTPASQENPITSVVRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNI 99 (616)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~ 99 (616)
++..+|..+....+.+ ..+..+..+|. +..+.+.+++..++.. +.++.+++.++.+|.++| ++++|+++
T Consensus 102 ~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g-~~~~A~~~ 172 (597)
T 2xpi_A 102 CAAFVGEKVLDITGNP-----NDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLY-DWQGALNL 172 (597)
T ss_dssp HHHHHHHHHHHHHCCH-----HHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHHHHHHHHhhCCCc-----hHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHh-hHHHHHHH
Confidence 3666666665322211 23344555554 5788888888877543 468899999999999999 99999999
Q ss_pred HhhC-CCC------------------ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHH----------
Q 007134 100 FSHV-QDP------------------NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTH-TYPFL---------- 149 (616)
Q Consensus 100 f~~m-~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~l---------- 149 (616)
|+++ +.. ++.+|+.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 250 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADE 250 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHH
T ss_pred HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchh
Confidence 9954 443 48899999999999999999999999999854 4433 22222
Q ss_pred ----------------------------HHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 007134 150 ----------------------------LKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVF 201 (616)
Q Consensus 150 ----------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 201 (616)
+..|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 44455678899999999998775 588999999999999999999999999
Q ss_pred hhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc
Q 007134 202 ELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN 278 (616)
Q Consensus 202 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 278 (616)
+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..++..++..|.+.|++++|.++++.+.+.. +.+
T Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 406 (597)
T 2xpi_A 329 TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQF 406 (597)
T ss_dssp HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCC
Confidence 99853 477899999999999999999999999998653 5678899999999999999999999999998864 557
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++..+
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 88999999999999999999999998753 478899999999999999999999999998754 34678999999999
Q ss_pred hcCCChHHHHHHHHHhHHhh---CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCC
Q 007134 356 SHCGMVDEGFSYFKRMKDEY---GIMPK--IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGH 428 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~ 428 (616)
.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.|+++. ..| +..+|..+..+|...|+
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 99999999999999997643 55777 7899999999999999999999998873 445 78999999999999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
+++|...++++++++|+++..+..++++|..
T Consensus 566 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=255.95 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCC---------ccHHHHHHHHHHHCCCCCCHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMS----ERDLVAWNSVINGFASNGK---------PNEALTLFREMASEGVEPDGYT 246 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~p~~~t 246 (616)
+++.+|++|+|.|++++|+++|++|. .||.++||+||.+|.+.+. .++|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 34445555555555555555555553 2455555555555554433 2345555555555555555555
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhhHHHHHHHHHH
Q 007134 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR----KRNAVSWSTLVVGLAV 322 (616)
Q Consensus 247 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~ 322 (616)
|+++|.+|++.|++++|.+++++|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+|++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 555555555555555555555555555555555555555555555555555555555443 2344455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHh
Q 007134 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 356 (616)
.|+.++|.++|++|.+.|..|+..||+.++..|.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555554444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-25 Score=231.30 Aligned_cols=366 Identities=11% Similarity=0.041 Sum_probs=243.4
Q ss_pred hCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHH
Q 007134 88 SLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQ 164 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 164 (616)
+.| ++++|.+.|+.+. ..+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+...|++++|.+
T Consensus 11 ~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 11 QAG-DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 344 5555555555432 1233444555555555555666655555555432 2334455555555555566666666
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCC
Q 007134 165 THSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREMASEGVE 241 (616)
Q Consensus 165 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 241 (616)
.++.+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ | +...+..+...+...|++++|++.|+++.... +
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 666555543 33344555566666666666666666655432 2 23345555555666666666666666665542 2
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHH
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVV 318 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~ 318 (616)
.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++.. ..+..+|..+..
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 234556666666666666666666666666553 3345666677777777777777777777553 235677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 007134 319 GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 398 (616)
.|...|++++|++.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+. .+.+...+..+...+.+.|+++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887743 223567788888888888899998888888763 3456788888889999999999
Q ss_pred HHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 399 QAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 399 ~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
+|.+.++++. ..| +..++..+...+...|++++|...++++++++|+++..|..++.+|...|
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 9999998873 445 57788899999999999999999999999999988888888888877665
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-28 Score=253.41 Aligned_cols=184 Identities=13% Similarity=0.133 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCC---------cHHHHHHHHHHHHhCCCCcHH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD---------VRMGEQTHSVAIRNGFESLVF 179 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 179 (616)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888899999999999999999999999999999999999999987654 578999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSE----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACA 255 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 255 (616)
+||+||++|++.|++++|.++|++|.+ ||.++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999863 7999999999999999999999999999999999999999999999999
Q ss_pred hcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007134 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC 292 (616)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 292 (616)
+.|+.++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-25 Score=226.91 Aligned_cols=352 Identities=13% Similarity=0.096 Sum_probs=307.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 007134 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTH-TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192 (616)
Q Consensus 114 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 192 (616)
+...+.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345677899999999999999875 45554 55566677788999999999999998875 677889999999999999
Q ss_pred CHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCchHHHHHHHH
Q 007134 193 HVKDACKVFELMSE--R-DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD-GYTMVSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 193 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (616)
++++|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998753 3 5568999999999999999999999999875 344 4456677788889999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-C
Q 007134 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-G 344 (616)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~ 344 (616)
.+.+.. +.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .| +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 999874 55678999999999999999999999998863 35678999999999999999999999999874 45 4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHH
Q 007134 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGA 422 (616)
Q Consensus 345 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a 422 (616)
..++..+...+...|++++|...|+.+.+. .+.+...|..+...+.+.|++++|.+.|+++. .+.+..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 678889999999999999999999999862 33347789999999999999999999998883 33478899999999
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999975
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=214.44 Aligned_cols=392 Identities=9% Similarity=-0.099 Sum_probs=314.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 007134 77 DLGKYLIYAIVSLSFPMSYAHNIFSHVQ--DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAIS 154 (616)
Q Consensus 77 ~~~~~li~~y~~~~~~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~ 154 (616)
..+..+...|.+.| ++++|...|+++. .||...|..+..+|.+.|++++|+..|+++.+.+ +.+..++..+..++.
T Consensus 7 ~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNK-KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTS-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44566677888888 9999999999875 3789999999999999999999999999998854 234467888899999
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHh--------------------------------
Q 007134 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFE-------------------------------- 202 (616)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~-------------------------------- 202 (616)
..|++++|...++.+.+.+ +++......++..+.+......+.+.+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999999876 3344444444444444332222222221
Q ss_pred ------hcCC---------C-ChhHHHHHHHHHHh---CCCccHHHHHHHHHHH-----CCC--------CCCHHHHHHH
Q 007134 203 ------LMSE---------R-DLVAWNSVINGFAS---NGKPNEALTLFREMAS-----EGV--------EPDGYTMVSL 250 (616)
Q Consensus 203 ------~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~~l 250 (616)
.... + +...+......+.. .|++++|+..|+++.. ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1100 1 13344444454554 8999999999999987 311 2234577788
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHH
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGK 327 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 327 (616)
...+...|++++|...+..+.+.... ..++..+...|...|++++|.+.|+.+.. .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88899999999999999999987633 88889999999999999999999998764 36778999999999999999
Q ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 328 EALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
+|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|...++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998854 224578888899999999999999999999874 3345778899999999999999999999877
Q ss_pred C----CCCc----HHHHHHHHHHHHH---cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 408 L----MPPN----AVIWRTLLGACTI---HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 408 ~----~~pd----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
. ..|+ ..+|..+...+.. .|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 2222 4488999999999 999999999999999999999999999999999999999999999998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-21 Score=204.35 Aligned_cols=291 Identities=10% Similarity=0.002 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY 188 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 188 (616)
..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344444444444444444444444444321 1223334444444444444444444444444433 22344444455555
Q ss_pred HhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHH------------HHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHH
Q 007134 189 AAFGHVKDACKVFELMSER---DL---VAWNSVIN------------GFASNGKPNEALTLFREMASEGVEPDGYTMVSL 250 (616)
Q Consensus 189 ~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 250 (616)
.+.|++++|.+.|+++.+. +. ..|..++. .+.+.|++++|+..|+++.... +.+..++..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 5555555555555544321 11 33333322 2444455555555555444331 2233344444
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhhHHHH-----------
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK--R-NAVSWSTL----------- 316 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~l----------- 316 (616)
..++...|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.. | +...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444332 22334444444444444444444444444321 1 22222222
Q ss_pred -HHHHHHcCCHHHHHHHHHHHHhCCCcCC-----HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 007134 317 -VVGLAVNGFGKEALELFKEMEIGGFVPG-----EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390 (616)
Q Consensus 317 -i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 390 (616)
...+...|++++|+..|+++.+. .|+ ...+..+...+.+.|++++|...++.+.+. .+.+...|..+..+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 44455555555555555555442 232 223444444555555555555555554431 11234445555555
Q ss_pred HHhcCCHHHHHHHHHhC
Q 007134 391 LGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m 407 (616)
|.+.|++++|.+.++++
T Consensus 339 ~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 55555555555555444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-21 Score=205.59 Aligned_cols=336 Identities=12% Similarity=0.017 Sum_probs=275.0
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007134 127 AVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE 206 (616)
Q Consensus 127 A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 206 (616)
+...+.+..... +.+..++..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|.+.|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344444444332 3345678888899999999999999999999874 56788999999999999999999999998764
Q ss_pred ---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHhcCchHHHHHHH
Q 007134 207 ---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDG----YTMVSL------------FSACAELGALALGRRAH 267 (616)
Q Consensus 207 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~~~ 267 (616)
.+..+|..+...|.+.|++++|++.|+++... .|+. ..+..+ ...+...|++++|...+
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45778999999999999999999999999875 3443 444444 44488899999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC
Q 007134 268 TYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG 344 (616)
Q Consensus 268 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 344 (616)
..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++... .|+
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 243 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQD 243 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 9999875 56788999999999999999999999998863 57889999999999999999999999999874 454
Q ss_pred HH-HHHHH------------HHHHhcCCChHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 345 EV-TFVGV------------LYACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 345 ~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (616)
.. .+..+ ...+.+.|++++|..+|+.+.+. .|+ ..+|..+...+.+.|++++|++.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 43 33333 78899999999999999999864 344 45789999999999999999999988
Q ss_pred C-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhh------------HHhHhcc-----cchHHH
Q 007134 407 M-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS------------NLYAYEQ-----RWLNVQ 467 (616)
Q Consensus 407 m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g-----~~~~a~ 467 (616)
+ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...| +.+++.
T Consensus 321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 7 3455 6899999999999999999999999999999999988888888 5566666 455666
Q ss_pred HHHHH
Q 007134 468 EVRRT 472 (616)
Q Consensus 468 ~~~~~ 472 (616)
+.+++
T Consensus 401 ~~y~~ 405 (450)
T 2y4t_A 401 KAYRK 405 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-21 Score=205.55 Aligned_cols=391 Identities=9% Similarity=-0.098 Sum_probs=308.9
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
+..+.+...+..+++.. | ++..+..+..+|.+.| ++++|...|+.+. ..+...|..+..+|.+.|++++|+..
T Consensus 20 g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVG-DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHh-hHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 68899999999999987 3 6889999999999999 9999999999754 34678999999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHH-----------------------------------HHhCC-
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVA-----------------------------------IRNGF- 174 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~-----------------------------------~~~g~- 174 (616)
|+++...+. ++......++..+........+.+.+..+ .....
T Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999998753 34444444444333222111111111100 00000
Q ss_pred --------CCcHHHHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------C-ChhHHHHHHHHHHhCCCcc
Q 007134 175 --------ESLVFVQNSLVHMYAA---FGHVKDACKVFELMSE----------------R-DLVAWNSVINGFASNGKPN 226 (616)
Q Consensus 175 --------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~ 226 (616)
+.+...+..+...+.. .|++++|...|+++.+ + +..+|..+...+...|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 1224445555555554 8999999999988654 1 3457888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR 306 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 306 (616)
+|+..|+++.... |+..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.
T Consensus 255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 331 (514)
T 2gw1_A 255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAK 331 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998865 447888889999999999999999999998764 4567788999999999999999999999875
Q ss_pred ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC---
Q 007134 307 ---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK--- 380 (616)
Q Consensus 307 ---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--- 380 (616)
..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+.+...-.++
T Consensus 332 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 410 (514)
T 2gw1_A 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410 (514)
T ss_dssp HTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS
T ss_pred HhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH
Confidence 3367789999999999999999999999998753 234577888899999999999999999998764333333
Q ss_pred -hhhHHHHHHHHHh---cCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhh
Q 007134 381 -IEHFGCMVDLLGR---AGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453 (616)
Q Consensus 381 -~~~~~~li~~~~~---~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 453 (616)
...+..+...+.+ .|++++|.+.+++.. ..| +..+|..+...+...|++++|...++++++++|+++..+..+
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3489999999999 999999999998873 344 678899999999999999999999999999999876655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=195.60 Aligned_cols=387 Identities=9% Similarity=-0.048 Sum_probs=298.9
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 007134 76 PDLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKA 152 (616)
Q Consensus 76 ~~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~ 152 (616)
...+..+...|.+.| ++++|...|+++. ..++..|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 455677778888888 8999999998754 3478889999999999999999999999998854 2345677888888
Q ss_pred HHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------Chh------------
Q 007134 153 ISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSER----------DLV------------ 210 (616)
Q Consensus 153 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~~------------ 210 (616)
+...|++++|...++ .+.. .|+ ..+..+..+...+...+|...++.+... +..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 889999999999886 3322 222 2233355666667778888888887542 111
Q ss_pred ------------------HHHHHHHHHHh--------CCCccHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHh
Q 007134 211 ------------------AWNSVINGFAS--------NGKPNEALTLFREMASEGVEPD--------GYTMVSLFSACAE 256 (616)
Q Consensus 211 ------------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~a~~~ 256 (616)
.+..+...+.. .|++++|+.+|+++.+.. |+ ..++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 12222222211 247899999999998753 33 2346666777888
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELF 333 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 333 (616)
.|++++|...+..+.+.. |+...+..+...|...|++++|.+.|+++. ..+..+|..+...+...|++++|++.|
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999875 447888899999999999999999999875 346788999999999999999999999
Q ss_pred HHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-----
Q 007134 334 KEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML----- 408 (616)
Q Consensus 334 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----- 408 (616)
++..+.. +.+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...+.+.|++++|.+.++++.
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9998753 224577888999999999999999999999874 33457789999999999999999999998861
Q ss_pred ---CCCcHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 409 ---MPPNAVIWRTLLGACTIH----------GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 409 ---~~pd~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.......+..+...+... |++++|...++++++.+|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111223455556677777 9999999999999999999999999999999999999999999999876
Q ss_pred C
Q 007134 476 E 476 (616)
Q Consensus 476 ~ 476 (616)
.
T Consensus 491 ~ 491 (537)
T 3fp2_A 491 L 491 (537)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-19 Score=188.14 Aligned_cols=384 Identities=10% Similarity=-0.016 Sum_probs=294.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCCchHHHHH
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ---DPNIFTWNTMIRGYAESANPLLAVEL 130 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 130 (616)
++.+.+...+..+++.. |.++..+..+...|.+.| ++++|.+.|++.. ..+...|..+...|.+.|++++|+..
T Consensus 39 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 57788999999999887 678999999999999998 9999999999764 34788999999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhC------CCCcH--------------------------
Q 007134 131 YSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNG------FESLV-------------------------- 178 (616)
Q Consensus 131 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~-------------------------- 178 (616)
|+.+ . ..|+... ..+..+...+....+...++.+++.. ..|+.
T Consensus 116 ~~~~-~--~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 116 LSVL-S--LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHH-h--cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 9743 3 2233221 11223333344456666666664320 11111
Q ss_pred ----HHHHHHHHHHHhc--------CCHHHHHHHHhhcCC--CC--------hhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 007134 179 ----FVQNSLVHMYAAF--------GHVKDACKVFELMSE--RD--------LVAWNSVINGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 179 ----~~~~~Li~~y~~~--------g~~~~A~~~f~~~~~--~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (616)
.....+...|... |++++|..+|+++.+ |+ ..+|..+...+...|++++|+..|++..
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~ 270 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 1333333333322 488999999998865 32 2357777788999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhH
Q 007134 237 SEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSW 313 (616)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~ 313 (616)
.. .|+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|
T Consensus 271 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 271 NL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred hc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 85 4667888889999999999999999999999875 5568889999999999999999999999875 3467889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHH
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVD 389 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~ 389 (616)
..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...|+.+.+...-.++ ...+..+..
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999998753 334567888899999999999999999998764321121 222445567
Q ss_pred HHHhc----------CCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 390 LLGRA----------GLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 390 ~~~~~----------g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.+.+. |++++|...|++.. ..| +..+|..+...+...|++++|...+++++++.|+++..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 77788 99999999998873 445 67899999999999999999999999999999986543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-18 Score=170.46 Aligned_cols=322 Identities=10% Similarity=-0.018 Sum_probs=219.5
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 186 (616)
|+..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667778888888888888888888887753 2345566677777777788888888887777764 445667777777
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCh------hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch
Q 007134 187 MYAAFGHVKDACKVFELMSERDL------VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 260 (616)
.|.+.|++++|.+.|++..+.+. ..+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 77777777777777777654222 22322211000 00112223455666666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...+...|++++|...|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666553 34556666777777777777777777776643 356677777777777888888888887777
Q ss_pred hCCCcCCH-HHHH------------HHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-h----hhHHHHHHHHHhcCCHHH
Q 007134 338 IGGFVPGE-VTFV------------GVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-I----EHFGCMVDLLGRAGLVKQ 399 (616)
Q Consensus 338 ~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~li~~~~~~g~~~~ 399 (616)
+. .|+. ..+. .+...+.+.|++++|...++.+.+.. |+ . ..+..+...+.+.|++++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHHH
Confidence 63 2332 2221 23556778889999998888887642 33 2 235567788889999999
Q ss_pred HHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 400 AYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 400 A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
|.+.+++.. ..| +..+|..+...+...|++++|...++++++++|+++.....+..++..
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 999887773 345 678888899999999999999999999999999877766666665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-17 Score=168.50 Aligned_cols=304 Identities=13% Similarity=0.022 Sum_probs=228.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 007134 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFA 220 (616)
Q Consensus 144 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 220 (616)
..+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345566666777777777777777777764 44566777777777777777777777776543 34566777777777
Q ss_pred hCCCccHHHHHHHHHHHCCCCC---CH-HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007134 221 SNGKPNEALTLFREMASEGVEP---DG-YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 296 (616)
+.|++++|+..|++..+. .| +. ..+..+... .. ...+..+...|...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCHH
Confidence 777777777777777654 33 21 111111111 00 112233467889999999
Q ss_pred HHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 297 AAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 297 ~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
+|.+.|+++. ..+...|..+...+...|++++|+..+++..+.. +.+..++..+...+...|++++|...|+...+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999875 3477889999999999999999999999998853 34567888899999999999999999999986
Q ss_pred hhCCCCChhhHH------------HHHHHHHhcCCHHHHHHHHHhCC-CCCc-H----HHHHHHHHHHHHcCCcHHHHHH
Q 007134 374 EYGIMPKIEHFG------------CMVDLLGRAGLVKQAYEYIQNML-MPPN-A----VIWRTLLGACTIHGHSAIAEIA 435 (616)
Q Consensus 374 ~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~-~~pd-~----~~~~~ll~a~~~~g~~~~a~~~ 435 (616)
.. +.+...+. .+...+.+.|++++|.+.+++.. ..|+ . ..+..+...+...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 42 22233333 23667899999999999998873 3343 3 3355677899999999999999
Q ss_pred HHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 436 RSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++++++.+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-18 Score=175.63 Aligned_cols=320 Identities=13% Similarity=0.067 Sum_probs=152.7
Q ss_pred hCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHH
Q 007134 88 SLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHS 167 (616)
Q Consensus 88 ~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~ 167 (616)
++| ++++|.+.+++++.|+ +|+.|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 15 ~~~-~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIG-NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc-CHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666 8999999999997764 9999999999999999999999753 677899999999999999999999888
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHH
Q 007134 168 VAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTM 247 (616)
Q Consensus 168 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 247 (616)
.+++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 45678899999999999999999988864 67789999999999999999999999987 378
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHH
Q 007134 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGK 327 (616)
Q Consensus 248 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 327 (616)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 99999999999999999999887 378999999999999999999988777655 44444557889999999999
Q ss_pred HHHHHHHHHHhCCCcCCHHHHH--HHHHHHhcCCChHHHHHHHHHhHHhhCCCC------ChhhHHHHHHHHHhcCCHHH
Q 007134 328 EALELFKEMEIGGFVPGEVTFV--GVLYACSHCGMVDEGFSYFKRMKDEYGIMP------KIEHFGCMVDLLGRAGLVKQ 399 (616)
Q Consensus 328 ~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 399 (616)
+|+.+++...... +-....|. .++-+-.+.+++.+..+.|..- -+++| +...|..++-.|...++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999987543 22233444 4444444556666666666532 25555 57789999999999999999
Q ss_pred HHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 400 AYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 400 A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
|....-+-+ ..-+...| .....+..+.+.-.++..--++..|
T Consensus 301 A~~tm~~h~~~a~~~~~f---~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 301 AIITMMNHPTDAWKEGQF---KDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHSTTTTCCHHHH---HHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHhCChhhhhhHHH---HHHHhchhHHHHHHHHHHHHHhcCH
Confidence 988765543 21122222 2333445555444444443344333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-16 Score=164.11 Aligned_cols=366 Identities=12% Similarity=0.008 Sum_probs=302.9
Q ss_pred CChHHHHHHHHHHHh----CCCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCcc
Q 007134 74 NNPDLGKYLIYAIVS----LSFPMSYAHNIFSHVQD-PNIFTWNTMIRGYAE----SANPLLAVELYSKMHVSGIKPDTH 144 (616)
Q Consensus 74 ~~~~~~~~li~~y~~----~~~~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~ 144 (616)
.++.....|-.+|.. .+ +++.|...|++..+ .++..+..|...|.. .+++++|++.|++..+.| +..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 356677777788887 66 89999999986543 578889999999998 899999999999998865 556
Q ss_pred hHHHHHHHHHc----CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHH
Q 007134 145 TYPFLLKAISK----LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAA----FGHVKDACKVFELMSE-RDLVAWNSV 215 (616)
Q Consensus 145 t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~l 215 (616)
.+..+...+.. .+++++|...++.+.+.| +...+..|..+|.. .+++++|.+.|++..+ .+..++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67777777777 789999999999999876 56778888899988 8899999999998654 577889999
Q ss_pred HHHHHh----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007134 216 INGFAS----NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNALLD 287 (616)
Q Consensus 216 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (616)
...|.+ .++.++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..+..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 999998 899999999999998865 55677777777775 789999999999988865 4566777888
Q ss_pred HHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc
Q 007134 288 FYSK----CGIIIAAQRVFREMRKR-NAVSWSTLVVGLAVN-----GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357 (616)
Q Consensus 288 ~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 357 (616)
+|.. .++.++|.+.|+...+. +..++..+...|... ++.++|+..|++..+.| +...+..+...+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 8888 89999999999988654 677888888888887 89999999999998875 34566666666766
Q ss_pred CC---ChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----c
Q 007134 358 CG---MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI----H 426 (616)
Q Consensus 358 ~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~ 426 (616)
.| +.++|..+|+...+. .+...+..|..+|.. .+++++|.+.|++..-..+...+..|...+.. .
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 56 789999999999874 567888899999998 89999999999887433467788889888888 8
Q ss_pred CCcHHHHHHHHHHHhcCCC---CCCchhhhhHHhHh
Q 007134 427 GHSAIAEIARSTLLQLEPK---HSGDYVLLSNLYAY 459 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 459 (616)
++.++|...++++.+.+|+ ++.....++.++..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999998854 56666667766654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-17 Score=164.88 Aligned_cols=281 Identities=12% Similarity=0.002 Sum_probs=162.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (616)
++..+...+...|++++|.++|+++.+ .+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 334444444444444444444444321 122333444444444444555555444444431 1223344444444444
Q ss_pred cC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHH
Q 007134 257 LG-ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALEL 332 (616)
Q Consensus 257 ~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l 332 (616)
.| ++++|...+..+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44 4455555554444432 22344455555555566666666665555432 2345555566666666666666666
Q ss_pred HHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhC-------CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 007134 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG-------IMPKIEHFGCMVDLLGRAGLVKQAYEYIQ 405 (616)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 405 (616)
|++..+.. +.+...+..+...+...|++++|...|+.+.+... .+.....+..+...|.+.|++++|.+.++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666542 22345566666666677777777777766655321 12335677788888888888888888887
Q ss_pred hCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh-Hhcccc
Q 007134 406 NML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY-AYEQRW 463 (616)
Q Consensus 406 ~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~ 463 (616)
+.. ..| +..+|..+...+...|++++|...++++++++|+++..+..++.++ ...|+.
T Consensus 261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 662 333 5677888888888888888888888888888888887777888777 344443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-15 Score=162.62 Aligned_cols=394 Identities=8% Similarity=0.021 Sum_probs=282.3
Q ss_pred CCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 007134 73 LNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--P-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFL 149 (616)
Q Consensus 73 ~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 149 (616)
|.+...|..++. +.+.| +++.|+.+|+++.+ | +...|...+..+.+.|++++|..+|++++.. .|+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~-~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQ-PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSS-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 578888888888 46677 89999999987654 3 5678999999999999999999999999875 3666666555
Q ss_pred HHHH-HcCCCcHHHHH----HHHHHHHh-CCC-CcHHHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CCh---
Q 007134 150 LKAI-SKLADVRMGEQ----THSVAIRN-GFE-SLVFVQNSLVHMYAA---------FGHVKDACKVFELMSE-RDL--- 209 (616)
Q Consensus 150 l~~~-~~~~~~~~a~~----~~~~~~~~-g~~-~~~~~~~~Li~~y~~---------~g~~~~A~~~f~~~~~-~~~--- 209 (616)
+... ...|+.+.|++ +++.+++. |.. ++..+|...+....+ .|+++.|.++|++..+ |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 5432 34567766655 67766653 543 346678877776655 7889999999988765 221
Q ss_pred hHHHHHHHHH-------------HhCCCccHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHHhc--
Q 007134 210 VAWNSVINGF-------------ASNGKPNEALTLFREMA------SEG---VEPDG--------YTMVSLFSACAEL-- 257 (616)
Q Consensus 210 ~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~t~~~ll~a~~~~-- 257 (616)
..|....... .+.+++.+|..++.++. +.. ++|+. ..|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 2333322210 12345677777776532 211 34442 2343333322221
Q ss_pred --Cch----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhcCC---C-ChhhH
Q 007134 258 --GAL----ALGRRAHTYVWKVGLSDNVNVNNALLDFYSK-------CGIII-------AAQRVFREMRK---R-NAVSW 313 (616)
Q Consensus 258 --~~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~f~~m~~---~-~~~~~ 313 (616)
++. +.+..+++++++.. +.+..+|..++..+.+ .|+++ +|.++|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 122 36677888888763 5578888888888876 79987 89999998764 3 57789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH--HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHH
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGE--VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDL 390 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 390 (616)
..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|..+|+...+. .|+ ...|...+..
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHH
Confidence 99999999999999999999999984 5543 47888888888899999999999999753 333 3333333322
Q ss_pred -HHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC----chhhhhHHhHhcccc
Q 007134 391 -LGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG----DYVLLSNLYAYEQRW 463 (616)
Q Consensus 391 -~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~y~~~g~~ 463 (616)
+...|+.++|..+|++. ...| +...|..++......|+.++|..++++++...|.++. .+...+......|+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 34689999999999876 2345 5789999999999999999999999999998776655 455556667788999
Q ss_pred hHHHHHHHHHhhC
Q 007134 464 LNVQEVRRTMVKE 476 (616)
Q Consensus 464 ~~a~~~~~~m~~~ 476 (616)
+.+.++.+++.+.
T Consensus 480 ~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 480 ASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-16 Score=156.82 Aligned_cols=286 Identities=12% Similarity=-0.011 Sum_probs=170.4
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 186 (616)
++..+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..++..+++.. +.+..++..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44455555555555666666666666655532 1223344444455555555555555555555543 333444555555
Q ss_pred HHHhcC-CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 007134 187 MYAAFG-HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265 (616)
Q Consensus 187 ~y~~~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 265 (616)
.|...| ++++|.+.|++ ..... +.+...+..+...+...|++++|..
T Consensus 99 ~~~~~~~~~~~A~~~~~~-------------------------------a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSK-------------------------------ATTLE-KTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHHHSCSCHHHHHHHHHH-------------------------------HHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHH-------------------------------HHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 555555 55555555554 43322 1123334444444444444444544
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC--
Q 007134 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG-- 340 (616)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 340 (616)
.+..+.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+...+...|++++|+..|++..+..
T Consensus 147 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 147 AYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 444444432 22334444566666667777777777766543 245667777777777888888888877776521
Q ss_pred ------CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-c
Q 007134 341 ------FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-N 412 (616)
Q Consensus 341 ------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d 412 (616)
...+..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++.. ..| +
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1233467778888888888888888888888763 23357778888888999999999999998873 556 5
Q ss_pred HHHHHHHHHHH-HHcCCc
Q 007134 413 AVIWRTLLGAC-TIHGHS 429 (616)
Q Consensus 413 ~~~~~~ll~a~-~~~g~~ 429 (616)
...+..+..++ ...|+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHTTTTC-
T ss_pred hHHHHHHHHHHHHHhCch
Confidence 66777777766 444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-15 Score=157.34 Aligned_cols=352 Identities=15% Similarity=0.056 Sum_probs=297.3
Q ss_pred CCChhHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHc----CCCcHHHHHHHHHHHHhCCCC
Q 007134 105 DPNIFTWNTMIRGYAE----SANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISK----LADVRMGEQTHSVAIRNGFES 176 (616)
Q Consensus 105 ~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 176 (616)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.+..+.+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3577888888888888 899999999999998864 55677777788877 899999999999999876
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCCHHHH
Q 007134 177 LVFVQNSLVHMYAA----FGHVKDACKVFELMSE-RDLVAWNSVINGFAS----NGKPNEALTLFREMASEGVEPDGYTM 247 (616)
Q Consensus 177 ~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 247 (616)
+...+..|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56777889999998 8999999999998765 467788888888988 789999999999998875 66777
Q ss_pred HHHHHHHHh----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHH
Q 007134 248 VSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK----CGIIIAAQRVFREMRK-RNAVSWSTLVV 318 (616)
Q Consensus 248 ~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~ 318 (616)
..+...+.. .++.++|...+....+.| +...+..+..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 788888877 789999999999999876 56678888888886 8899999999998765 46777888888
Q ss_pred HHHH----cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC-----CChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 319 GLAV----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC-----GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 319 ~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
.|.. .++.++|++.|++..+.| +...+..+...+... ++.++|...|+...+. .+...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8888 899999999999998765 445666666777766 8999999999999874 35667888888
Q ss_pred HHHhcC---CHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh---
Q 007134 390 LLGRAG---LVKQAYEYIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY--- 459 (616)
Q Consensus 390 ~~~~~g---~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 459 (616)
.|.+.| +.++|.+.|++.....+...+..|...+.. .+++++|...++++.+.+ ++..+..|+.+|.+
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888767 789999999887433578889999999988 899999999999998764 47788899999998
Q ss_pred -cccchHHHHHHHHHhhCC
Q 007134 460 -EQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 460 -~g~~~~a~~~~~~m~~~~ 477 (616)
.+++++|.+.+++..+.+
T Consensus 415 ~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 899999999999998765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-17 Score=165.72 Aligned_cols=281 Identities=14% Similarity=0.001 Sum_probs=213.2
Q ss_pred HHhcCCHHHHHH-HHhhcCC--C-----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc
Q 007134 188 YAAFGHVKDACK-VFELMSE--R-----DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA 259 (616)
Q Consensus 188 y~~~g~~~~A~~-~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 259 (616)
|...|++++|.+ .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334477777777 7775432 1 34567778888888888888888888887763 4456677777788888888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHH---------------HHHHHH
Q 007134 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWST---------------LVVGLA 321 (616)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~---------------li~~~~ 321 (616)
+++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888887765 456777888888888888888888888876532 2222221 233344
Q ss_pred HcCCHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 322 VNGFGKEALELFKEMEIGGFV-PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
..|++++|+..|+++.+.... ++..++..+...+...|++++|...|+.+.+. .+.+...|..+...+.+.|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999875322 14788889999999999999999999999863 234578899999999999999999
Q ss_pred HHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-----------CCchhhhhHHhHhcccchHHH
Q 007134 401 YEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH-----------SGDYVLLSNLYAYEQRWLNVQ 467 (616)
Q Consensus 401 ~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~a~ 467 (616)
.+.++++. ..| +..+|..+...+...|++++|...+++++++.|++ ...+..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99998873 445 67899999999999999999999999999988876 677889999999999999999
Q ss_pred HHHHH
Q 007134 468 EVRRT 472 (616)
Q Consensus 468 ~~~~~ 472 (616)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 98763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-19 Score=176.90 Aligned_cols=252 Identities=13% Similarity=0.094 Sum_probs=120.7
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 007134 189 AAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHT 268 (616)
Q Consensus 189 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 268 (616)
-+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36788999999999996654 8999999999999999999999653 577799999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHH
Q 007134 269 YVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTF 348 (616)
Q Consensus 269 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 348 (616)
...+. .+++.+.+.|+.+|.++|+++++.++|+ .|+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 4557889999999999999999998886 477789999999999999999999999977 368
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGH 428 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~ 428 (616)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCC
Confidence 89999999999999999999987 36899999999999999999997777666655654 3468889999999
Q ss_pred cHHHHHHHHHHHhcCCCCCCchhhhhHHhHh--cccchHHHHHHH
Q 007134 429 SAIAEIARSTLLQLEPKHSGDYVLLSNLYAY--EQRWLNVQEVRR 471 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~ 471 (616)
+++|..+++..+++++...+.|.-|+.+|++ -|+..|..+.|.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999998888889989888875 567777777764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-16 Score=161.12 Aligned_cols=284 Identities=12% Similarity=-0.024 Sum_probs=158.2
Q ss_pred hcCCchHHHH-HHHHHHHCCC---CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHH
Q 007134 120 ESANPLLAVE-LYSKMHVSGI---KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVK 195 (616)
Q Consensus 120 ~~g~~~~A~~-l~~~m~~~g~---~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 195 (616)
..|++++|++ .|++...... ..+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6665544211 1134556677777777788888888888877764 456677777888888888888
Q ss_pred HHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHHHHh
Q 007134 196 DACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY-TMVS---------------LFSACAE 256 (616)
Q Consensus 196 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~a~~~ 256 (616)
+|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.. .+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88888876542 456678888888888888888888888887653 2221 1111 1122224
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
.|++++|...+..+.+..... .+..+|..+...|...|++++|+..|+++
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444432110 02344455555555555555555555555
Q ss_pred HhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----
Q 007134 337 EIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP---- 411 (616)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---- 411 (616)
.... +.+..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|...|++.. ..|
T Consensus 244 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 244 LSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 4421 112344555555555555555555555555442 12234555555666666666666666555441 111
Q ss_pred --------cHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 007134 412 --------NAVIWRTLLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 412 --------d~~~~~~ll~a~~~~g~~~~a~~~~~~~ 439 (616)
...+|..+..++...|+.++|..++++.
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1466777777777777777777666544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-15 Score=148.64 Aligned_cols=270 Identities=11% Similarity=-0.041 Sum_probs=212.3
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCh----hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHH
Q 007134 187 MYAAFGHVKDACKVFELMSERDL----VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALAL 262 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 262 (616)
-....|+++.|+..++.....+. .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34567888888888877655332 2445567888888888888876644 135667777888888888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 263 GRRAHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 263 a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
|.+.++.+...+. +.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888887764 44566777888999999999999999998 567889999999999999999999999999885
Q ss_pred cCCHHHH---HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHH
Q 007134 342 VPGEVTF---VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIW 416 (616)
Q Consensus 342 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~ 416 (616)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3664321 12334444569999999999999884 4567889999999999999999999999886 3556 67899
Q ss_pred HHHHHHHHHcCCcHH-HHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHH
Q 007134 417 RTLLGACTIHGHSAI-AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVR 470 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 470 (616)
..++..+...|+.++ +.++++++++++|+++. +.+...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 999999999999976 67899999999999764 445566777777665443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=163.05 Aligned_cols=261 Identities=13% Similarity=-0.027 Sum_probs=203.7
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLD 287 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 287 (616)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44567778888888888888888888887653 3466777788888888888888888888887764 455777888888
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCc-CCHHHHHHHHH
Q 007134 288 FYSKCGIIIAAQRVFREMRKRN-------------AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFV-PGEVTFVGVLY 353 (616)
Q Consensus 288 ~y~~~g~~~~A~~~f~~m~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 353 (616)
.|.+.|++++|.+.|+++.+.+ ...+..+...+...|++++|++.|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888888775321 223344578888999999999999999885322 15778888999
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
.+...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|...|++.. ..| +..+|..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 33458899999999999999999999998873 455 57899999999999999999
Q ss_pred HHHHHHHHHhcCCCC------------CCchhhhhHHhHhcccchHHHHHHHH
Q 007134 432 AEIARSTLLQLEPKH------------SGDYVLLSNLYAYEQRWLNVQEVRRT 472 (616)
Q Consensus 432 a~~~~~~~~~~~p~~------------~~~~~~l~~~y~~~g~~~~a~~~~~~ 472 (616)
|...+++++++.|+. ...+..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999888773 45577899999999999988877654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-15 Score=155.73 Aligned_cols=243 Identities=10% Similarity=-0.032 Sum_probs=131.8
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 297 (616)
.++.++|++.|++..+.+ +.+..++..+...+.. .++.++|.+.++...+.. +.+..++..+...|.+.|++++
T Consensus 188 ~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence 445555555555554432 2223333333333322 234455555555554443 3344455555555555555555
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHH-------------------cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 298 AQRVFREMRK---RNAVSWSTLVVGLAV-------------------NGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 298 A~~~f~~m~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
|...|++..+ .+..+|..+...|.. .+..++|...|++..+.. +.+..++..+...+
T Consensus 266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHH
Confidence 5555555432 233344444333322 223567778887776643 22335566777888
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChh----hHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHcCCc
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIE----HFGCMVD-LLGRAGLVKQAYEYIQNM-LMPPNAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~~~~g~~ 429 (616)
...|++++|...|++..+. .|+.. .+..+.. .+.+.|+.++|+..|++. .+.|+...+... .
T Consensus 345 ~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~ 412 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------K 412 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------H
T ss_pred HHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------H
Confidence 8899999999999888752 23322 2233332 235678999999988776 466664433322 2
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
+.+..++++.++.+|+++.++..|+.+|...|++++|.+.+++..+.+-.
T Consensus 413 ~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 413 DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44566778888999999999999999999999999999999998876543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-14 Score=152.28 Aligned_cols=385 Identities=10% Similarity=0.030 Sum_probs=283.3
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC--CChhHHHHHHHHH-HhcCCchHHHH-
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD--PNIFTWNTMIRGY-AESANPLLAVE- 129 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~--~~~~~~~~li~~~-~~~g~~~~A~~- 129 (616)
+....++.++..+++.- |.++.+|..++.++.+.| ++++|+++|++... |++..|...+... ...|+.++|.+
T Consensus 26 ~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 26 QPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp SCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHH
Confidence 67899999999998764 678999999999999998 99999999998653 7888888888643 45688887765
Q ss_pred ---HHHHHHHC-CCCCCc-chHHHHHHHHHc---------CCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHH-------
Q 007134 130 ---LYSKMHVS-GIKPDT-HTYPFLLKAISK---------LADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY------- 188 (616)
Q Consensus 130 ---l~~~m~~~-g~~pd~-~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y------- 188 (616)
+|++.+.. |..|+. ..|...+..... .|+++.|..+|+.+++........+|.......
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~ 182 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHL 182 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhH
Confidence 77776653 555543 455555555443 578999999999998832222223443332211
Q ss_pred ------HhcCCHHHHHHHHhhc------CC-------CC--------hhHHHHHHHHHHhC----CCc----cHHHHHHH
Q 007134 189 ------AAFGHVKDACKVFELM------SE-------RD--------LVAWNSVINGFASN----GKP----NEALTLFR 233 (616)
Q Consensus 189 ------~~~g~~~~A~~~f~~~------~~-------~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~ 233 (616)
.+.++++.|..++... .+ |+ ...|...+.-.... ++. ++|+.+|+
T Consensus 183 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 183 AKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 1345677787766641 11 11 24566666443332 222 37888999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-------cCchH-------HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007134 234 EMASEGVEPDGYTMVSLFSACAE-------LGALA-------LGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 234 ~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 299 (616)
+..... +-+...|......+.+ .|+++ +|..+++..++.-.+.+..++..++..+.+.|++++|.
T Consensus 263 ~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 263 QCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 988752 4456677777777665 68887 89999999886334567889999999999999999999
Q ss_pred HHHHhcCC--C-Ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH-HHhcCCChHHHHHHHHHhHHh
Q 007134 300 RVFREMRK--R-NA-VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY-ACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 300 ~~f~~m~~--~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~ 374 (616)
.+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+... .+...+..... .+...|+.++|..+|+...+.
T Consensus 342 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 342 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 99998753 3 33 4799999999999999999999999987531 12233332222 233589999999999999875
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC----CCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML----MPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 375 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
. +.+...|..+++.+.+.|+.++|..+|++.. ..|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 421 ~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 421 Y--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp H--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred C--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3 3358899999999999999999999998872 3343 458999999999999999999999999988885
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.7e-16 Score=157.75 Aligned_cols=226 Identities=13% Similarity=-0.004 Sum_probs=129.1
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 007134 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFA 220 (616)
Q Consensus 144 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 220 (616)
..+..+...+...|++++|.++++.+++.. +.+..++..+..+|.+.|++++|.+.|++..+ .+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345555666666666666666666666653 44566677777777777777777777776542 34567777777777
Q ss_pred hCCCccHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 007134 221 SNGKPNEALTLFREMASEGVEPDG-----------YTMVSLFSACAELGALALGRRAHTYVWKVGLS-DNVNVNNALLDF 288 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~-----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~ 288 (616)
+.|++++|+..|+++.+.. |+. ..+..+...+...|++++|...+..+.+.... .+..++..+...
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 7777777777777776532 221 12223345556666666666666666655311 145555666666
Q ss_pred HHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHH
Q 007134 289 YSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 365 (616)
|.+.|++++|.+.|+++. ..+..+|+.+...|...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 666666666666665543 2245556666666666666666666666655531 112445555555555556666666
Q ss_pred HHHHHhHH
Q 007134 366 SYFKRMKD 373 (616)
Q Consensus 366 ~~~~~m~~ 373 (616)
..|+.+.+
T Consensus 302 ~~~~~al~ 309 (365)
T 4eqf_A 302 SNFLTALS 309 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-14 Score=155.51 Aligned_cols=346 Identities=12% Similarity=0.033 Sum_probs=265.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhhCCC-C-----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 007134 78 LGKYLIYAIVSLSFPMSYAHNIFSHVQD-P-----NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLK 151 (616)
Q Consensus 78 ~~~~li~~y~~~~~~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 151 (616)
--...+..|...| .+.+|.+++++..- | +...-|.++....+. +..+..+...+... .....+..
T Consensus 987 eVs~~vKaf~~ag-lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A 987 EVSVTVKAFMTAD-LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred HhHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence 3345566777776 77777777776542 2 234555666666555 44555555544321 22344666
Q ss_pred HHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHH
Q 007134 152 AISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL 231 (616)
Q Consensus 152 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 231 (616)
.|...|.+++|.++|++.. ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|++++|++.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7778888888888888752 1222223332 27788999999988774 467899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 007134 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAV 311 (616)
Q Consensus 232 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~ 311 (616)
|.+. -|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..++..
T Consensus 1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~a 1196 (1630)
T 1xi4_A 1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNA 1196 (1630)
T ss_pred HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHH
Confidence 9663 467788999999999999999999999888764 34444556999999999998644442 456777
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHH
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 391 (616)
.|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHH
Confidence 8888999999999999999999984 47899999999999999999999877 4468999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh--cccchHHHHH
Q 007134 392 GRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY--EQRWLNVQEV 469 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--~g~~~~a~~~ 469 (616)
...|++..|......+. .++..+..++..|...|.+++|+.+++..++++|.+.+.|.-|+.+|++ -++..|+.++
T Consensus 1261 ve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred hhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998877543 3455666889999999999999999999999999888888888888875 4677777777
Q ss_pred HH
Q 007134 470 RR 471 (616)
Q Consensus 470 ~~ 471 (616)
|.
T Consensus 1339 f~ 1340 (1630)
T 1xi4_A 1339 FW 1340 (1630)
T ss_pred HH
Confidence 65
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-15 Score=152.82 Aligned_cols=257 Identities=11% Similarity=-0.058 Sum_probs=172.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444444432 2334444455555555
Q ss_pred cCCHHHHHHHHHhcCCC---ChhhHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 292 CGIIIAAQRVFREMRKR---NAVSWSTL--------------VV-GLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
.|++++|.+.|+++.+. +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555544321 12222222 22 2667788999999999988753 235677888888
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
.+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 899999999999999998763 23457788999999999999999999998863 344 67889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 432 AEIARSTLLQLEPK------------HSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 432 a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
|...++++++..|+ ++..+..++.+|.+.|++++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999998 5777889999999999999999988644
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-15 Score=145.48 Aligned_cols=245 Identities=11% Similarity=0.028 Sum_probs=201.4
Q ss_pred HHHHHhCCCccHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007134 216 INGFASNGKPNEALTLFREMASEGVEPDG--YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293 (616)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 293 (616)
|.-....|++.+|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999998876543 4443 3556678899999999999876543 24667888899999999999
Q ss_pred CHHHHHHHHHhcC----CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 294 IIIAAQRVFREMR----KR-NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 294 ~~~~A~~~f~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
+.++|.+.|+++. .| +...+..+...+.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566777888999999999999999987 356778888999999999999999999
Q ss_pred HHhHHhhCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 007134 369 KRMKDEYGIMPKIEH---FGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443 (616)
Q Consensus 369 ~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 443 (616)
+.+.+. .|+... ..+++..+...|++++|..+|+++. .+.+..+|+.+..++...|++++|+..++++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 355321 1234455556699999999999883 33478899999999999999999999999999999
Q ss_pred CCCCCchhhhhHHhHhcccchH-HHHHHHHHhh
Q 007134 444 PKHSGDYVLLSNLYAYEQRWLN-VQEVRRTMVK 475 (616)
Q Consensus 444 p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~~ 475 (616)
|+++.++..++.++...|+.++ +.++++++.+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999987 5688888865
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.9e-17 Score=175.19 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=105.0
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHH
Q 007134 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMR-------KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVT 347 (616)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (616)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456788899999999999999999987753 57899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 007134 348 FVGVLYACSHCGMV-DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEY 403 (616)
Q Consensus 348 ~~~ll~a~~~~g~~-~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 403 (616)
|+++|.++++.|.. ++|.++|++|.++ |+.||..+|++++....+.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999988874 7888999999876 9999999999888777666544444333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.2e-17 Score=174.58 Aligned_cols=151 Identities=14% Similarity=0.095 Sum_probs=123.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHH
Q 007134 174 FESLVFVQNSLVHMYAAFGHVKDACKVFELMS-------ERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246 (616)
Q Consensus 174 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 246 (616)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 44456789999999999999999999997763 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHH
Q 007134 247 MVSLFSACAELGAL-ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----NAVSWSTLVVGL 320 (616)
Q Consensus 247 ~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~ 320 (616)
|+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+-+.|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999985 789999999999999999999999998877765555554444433321 123334455555
Q ss_pred HHcC
Q 007134 321 AVNG 324 (616)
Q Consensus 321 ~~~g 324 (616)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=145.63 Aligned_cols=364 Identities=9% Similarity=-0.072 Sum_probs=238.8
Q ss_pred ChHHHHHHHHHHHhCCCCHHHHHHHHhhCC-----------C-CChhHHHHHHHHHHhcCCchHHHHHHHHHHHC-----
Q 007134 75 NPDLGKYLIYAIVSLSFPMSYAHNIFSHVQ-----------D-PNIFTWNTMIRGYAESANPLLAVELYSKMHVS----- 137 (616)
Q Consensus 75 ~~~~~~~li~~y~~~~~~~~~A~~~f~~m~-----------~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 137 (616)
...++|.|...|...| ++++|++.|++.. . ...++|+.+...|...|++++|+..|++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3567899999999998 9999999987531 2 35678999999999999999999999887652
Q ss_pred C-CCCC-cchHHHHHHHHH--cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHH---HhcCCHHHHHHHHhhcC---CC
Q 007134 138 G-IKPD-THTYPFLLKAIS--KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMY---AAFGHVKDACKVFELMS---ER 207 (616)
Q Consensus 138 g-~~pd-~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y---~~~g~~~~A~~~f~~~~---~~ 207 (616)
+ ..++ ..++.....++. ..+++++|.+.|+.+++.. +.++..+..+..++ ...++.++|.+.|++.. ..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 1122 234444444443 3457899999999999875 44566666665553 45577778888887654 24
Q ss_pred ChhHHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHH
Q 007134 208 DLVAWNSVINGFAS----NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNN 283 (616)
Q Consensus 208 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 283 (616)
+..++..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 55666666655554 467889999999987754 4566788889999999999999999999998875 45666777
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 284 ALLDFYSKC-------------------GIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 284 ~li~~y~~~-------------------g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
.+...|... +..+.|...|+... ..+..+|..+...|...|++++|++.|++..+...
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 776666432 23566777776654 34677899999999999999999999999987543
Q ss_pred cCCHH--HHHHHHH-HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHH
Q 007134 342 VPGEV--TFVGVLY-ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIW 416 (616)
Q Consensus 342 ~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~ 416 (616)
.|... .+..+.. ...+.|+.++|+..|++..+ +.|+........ ..+.+++++. ...| +..+|
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHH
Confidence 33321 1222222 34578999999999998874 446543332222 2333444333 2344 67899
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhh
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLS 454 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 454 (616)
..|...+...|++++|++.++++++++|.+|.+..-++
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999999998887765544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-12 Score=145.68 Aligned_cols=370 Identities=12% Similarity=0.078 Sum_probs=282.4
Q ss_pred hcCHHHHHHHHHHHHHhCC-CCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHH
Q 007134 53 ASSKHKLKQVHAFSIRHGV-PLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY 131 (616)
Q Consensus 53 ~~~~~~~~~~h~~~~~~g~-~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 131 (616)
++.+..+.++.+.++..+- -.++..+.|.|+.+..+.. ........+....-+ ..-+...+...|.+++|..+|
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD--~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IY 1072 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKAD--RTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIF 1072 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhC--hhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHH
Confidence 3677888888888884321 0146678888887777653 444444444443222 455788888999999999999
Q ss_pred HHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH
Q 007134 132 SKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVA 211 (616)
Q Consensus 132 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 211 (616)
++.. -.....+.++. ..+++++|.++.+.+ .+..+|..+..++.+.|++++|.+.|.+. .|...
T Consensus 1073 kKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~sa 1136 (1630)
T 1xi4_A 1073 RKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS 1136 (1630)
T ss_pred HHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHH
Confidence 9852 11122233332 667899998888754 44788999999999999999999999775 67788
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 212 WNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
|..++..+.+.|++++|++.|...++.. ++....+.++.+|++.++++....+. + .++...+..+.+.|..
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHh
Confidence 9999999999999999999999877654 33333445888999999888644432 2 3455666779999999
Q ss_pred cCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 292 CGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
.|++++|...|... ..|..+...|.+.|++++|.+.+++.. +..+|..+-.+|...|++..|......+
T Consensus 1208 eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred cCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 99999999999986 589999999999999999999999863 5688999999999999999998876643
Q ss_pred HHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHc--CCcHHHHHHHHHHHhcCC---
Q 007134 372 KDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIH--GHSAIAEIARSTLLQLEP--- 444 (616)
Q Consensus 372 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~--g~~~~a~~~~~~~~~~~p--- 444 (616)
..+...+..++..|.+.|.+++|+.+++.. +..| ....|.-|...+.+. ++..++.+.|..-..+.|
T Consensus 1277 ------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r 1350 (1630)
T 1xi4_A 1277 ------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 1350 (1630)
T ss_pred ------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH
Confidence 245667889999999999999999999765 4555 345676666666554 466777777776666555
Q ss_pred --CCCCchhhhhHHhHhcccchHHHHH
Q 007134 445 --KHSGDYVLLSNLYAYEQRWLNVQEV 469 (616)
Q Consensus 445 --~~~~~~~~l~~~y~~~g~~~~a~~~ 469 (616)
.+...|.-++.+|.+.|+|+.|...
T Consensus 1351 ~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4456678899999999999999843
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=143.81 Aligned_cols=218 Identities=14% Similarity=0.027 Sum_probs=103.2
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccH
Q 007134 151 KAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNE 227 (616)
Q Consensus 151 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 227 (616)
..+...|++++|..+++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHH
Confidence 33333444444444444443332 22334444444444445555555544444321 233445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHH-------------HH--HHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 228 ALTLFREMASEGVEPDGY-TMVSL-------------FS--ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 228 A~~~~~~m~~~g~~p~~~-t~~~l-------------l~--a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
|++.|+++.... |+.. .+..+ .. .+...|++++|...+..+.+.. +.+..++..+...|.+
T Consensus 108 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 184 (327)
T 3cv0_A 108 ALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNL 184 (327)
T ss_dssp HHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 555555554432 1111 11111 02 1445556666666666665543 2345555555556666
Q ss_pred cCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 292 CGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
.|++++|.+.|+++. ..+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|
T Consensus 185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666666666555543 1234455555555555555555555555554432 112344445555555555555555555
Q ss_pred HHhHH
Q 007134 369 KRMKD 373 (616)
Q Consensus 369 ~~m~~ 373 (616)
+.+.+
T Consensus 264 ~~a~~ 268 (327)
T 3cv0_A 264 VRAIY 268 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-13 Score=132.95 Aligned_cols=212 Identities=9% Similarity=-0.025 Sum_probs=138.6
Q ss_pred HHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------C----hhhHHHHHHHH
Q 007134 251 FSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR------N----AVSWSTLVVGL 320 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~----~~~~~~li~~~ 320 (616)
...+...|++++|...+..+.+.. .+..++..+...|...|++++|.+.|++..+. + ..+|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 333333444444444444433333 33344444444444444444444444443321 1 35566667777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
...|++++|++.|++.... .|+.. .+...|++++|...++.+.. ..+.+...+..+...+.+.|++++|
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHH
Confidence 7777777777777777663 34432 34455677788887777765 2222356677778888888888888
Q ss_pred HHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 401 YEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 401 ~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+.+++.. ..| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88887762 333 5778888888888888999999999888888888888888888889899999999888887765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=132.80 Aligned_cols=223 Identities=9% Similarity=-0.070 Sum_probs=147.1
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC--CCc----hhHHHH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL--SDN----VNVNNA 284 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~----~~~~~~ 284 (616)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555555555555555555555555544 4455555555555566666666666555554321 111 456666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHH
Q 007134 285 LLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEG 364 (616)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 364 (616)
+...|.+.|++++|.+.|++....+.. ...+...|++++|+..++++.... +.+...+..+...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHH
Confidence 667777777777777777665432111 234556677788888888777642 22335666777777888888888
Q ss_pred HHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 365 FSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 365 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
...|+.+.+. .+.+...|..+...|.+.|++++|...+++.. ..| +..+|..+...+...|++++|...+++++++
T Consensus 159 ~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 159 VKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888888763 23456778888888888888888888887762 334 5778888888889999999999999998888
Q ss_pred C
Q 007134 443 E 443 (616)
Q Consensus 443 ~ 443 (616)
.
T Consensus 237 ~ 237 (258)
T 3uq3_A 237 D 237 (258)
T ss_dssp H
T ss_pred C
Confidence 7
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-13 Score=130.26 Aligned_cols=241 Identities=12% Similarity=-0.049 Sum_probs=181.2
Q ss_pred hCCCccHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007134 221 SNGKPNEALTLFREMASEGVE---PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIA 297 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 297 (616)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777765321 134566677777777888888888888777764 4467778888888888888888
Q ss_pred HHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 298 AQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 298 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
|.+.|++..+ .+..+|..+...|...|++++|++.|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887653 36778888999999999999999999999874 455555555555667779999999999887763
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN-----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 375 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.+++...+ .++..+...++.++|.+.+++.. ..|+ ..+|..+...+...|++++|...++++++.+|++.
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 249 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF- 249 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC-
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH-
Confidence 33444444 47777888888999999998763 3332 57889999999999999999999999999998753
Q ss_pred chhhhhHHhHhcccchHHHHHH
Q 007134 449 DYVLLSNLYAYEQRWLNVQEVR 470 (616)
Q Consensus 449 ~~~~l~~~y~~~g~~~~a~~~~ 470 (616)
...+.++...|++++|.+.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 44577888899999988765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-13 Score=128.44 Aligned_cols=194 Identities=14% Similarity=-0.013 Sum_probs=148.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHH
Q 007134 276 SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGV 351 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 351 (616)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777788888888888888888887654 35677888888888888899998888888874 34 34667777
Q ss_pred HHHHhcC-----------CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHH
Q 007134 352 LYACSHC-----------GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTL 419 (616)
Q Consensus 352 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~l 419 (616)
..++... |++++|...|+...+. -+.+...|..+...|...|++++|+..|++.. ...+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 7788888 9999999999998763 22347788899999999999999999998762 22678899999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
..++...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-13 Score=128.54 Aligned_cols=240 Identities=11% Similarity=-0.002 Sum_probs=133.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPD--GYTMVSLFSACA 255 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~ 255 (616)
.......|.+.|++++|.+.|++..+ .+...|..+...|.+.|++++|+..|++....+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455666777777777777776532 2344666677777777777777777777666321111 123555555666
Q ss_pred hcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHH
Q 007134 256 ELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALEL 332 (616)
Q Consensus 256 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l 332 (616)
..|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+. +...|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665543 233445555555555555555555555554431 333444444122223355555555
Q ss_pred HHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHhCC-
Q 007134 333 FKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL---VKQAYEYIQNML- 408 (616)
Q Consensus 333 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~- 408 (616)
|++..+. .|+ +...+..+...+...|+ .++|...+++..
T Consensus 165 ~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 165 FVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 5544442 222 23334444444444444 333444443331
Q ss_pred ---CCCc------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 409 ---MPPN------AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 409 ---~~pd------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
..|+ ..+|..+...+...|++++|...++++++++|+++.+...+.....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 1122 2467778888899999999999999999999998776666555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-13 Score=138.16 Aligned_cols=364 Identities=11% Similarity=0.006 Sum_probs=170.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCH---HHHHHHHhhCCCCChhHHHHHHHHHHhcC-----Cch
Q 007134 54 SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPM---SYAHNIFSHVQDPNIFTWNTMIRGYAESA-----NPL 125 (616)
Q Consensus 54 ~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~ 125 (616)
++.+.+.+++..+.+.|.. .....|-.+|...| +. ++|...|++..+.++..+..|...+...| +++
T Consensus 17 g~~~~A~~~~~~aa~~g~~----~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELGYS----EAQVGLADIQVGTR-DPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHTCC----TGGGTCC-----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 4566666666666665531 12223444444444 45 66666666555545555555555444444 455
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcH---HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC----CHHHHH
Q 007134 126 LAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR---MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG----HVKDAC 198 (616)
Q Consensus 126 ~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~~~A~ 198 (616)
+|+..|++..+.|. ...+..+...+...+..+ .+.+.+......| +......|..+|...+ +.+.+.
T Consensus 92 ~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 92 EAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 66666666665442 224444444444433322 2333333333333 2334444555555555 333444
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhCC---CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC
Q 007134 199 KVFELMSERDLVAWNSVINGFASNG---KPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL 275 (616)
Q Consensus 199 ~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 275 (616)
.++......+..++..|...|.+.| +.++|++.|++..+.|
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g------------------------------------ 209 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG------------------------------------ 209 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC------------------------------------
Confidence 4444444444445555555555555 5555555555555444
Q ss_pred CCchhHHHHHHHHHHhc----CCHHHHHHHHHhcCCCChhhHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCcCCHHHH
Q 007134 276 SDNVNVNNALLDFYSKC----GIIIAAQRVFREMRKRNAVSWSTLVVG-L--AVNGFGKEALELFKEMEIGGFVPGEVTF 348 (616)
Q Consensus 276 ~~~~~~~~~li~~y~~~----g~~~~A~~~f~~m~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 348 (616)
+++...+..|..+|... ++.++|.+.|+.....+...+..+... | ...+++++|++.|++..+.| +...+
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 22222223344444333 455566666655552244455555544 2 34566666666666666554 33444
Q ss_pred HHHHHHHhcCC-----ChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCcHHHHHHH
Q 007134 349 VGVLYACSHCG-----MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVKQAYEYIQNMLMPPNAVIWRTL 419 (616)
Q Consensus 349 ~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~l 419 (616)
..+...|. .| ++++|...|+... +-+...+..|..+|.. ..++++|...|++..-.-+......|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 44444444 33 6667766666554 2345555556655554 33677777777665322233344444
Q ss_pred HHHHHH----cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh--HhcccchHHHHHHHHHhh
Q 007134 420 LGACTI----HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY--AYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 420 l~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y--~~~g~~~~a~~~~~~m~~ 475 (616)
...|.. ..+.++|...++++.+.++. .....+..+. ...+..++|.++.+..++
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444432 34677777777777665543 2222333332 233456666666665543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-12 Score=121.02 Aligned_cols=195 Identities=12% Similarity=-0.006 Sum_probs=127.6
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLV 185 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 185 (616)
++...|..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|...++.+++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 355677777777777888888888888777643 2234556667777777788888888887777764 45566777777
Q ss_pred HHHHhc-----------CCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007134 186 HMYAAF-----------GHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLF 251 (616)
Q Consensus 186 ~~y~~~-----------g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 251 (616)
.+|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 777777 777777777776543 345667777777777777777777777777665 5666677777
Q ss_pred HHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007134 252 SACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 305 (616)
.++...|++++|...++.+.+.. +.+..++..+...|.+.|++++|.+.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777777654 445666666777777777777777766654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-12 Score=130.73 Aligned_cols=242 Identities=10% Similarity=0.027 Sum_probs=146.2
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007134 211 AWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA-LALGRRAHTYVWKVGLSDNVNVNNALLDFY 289 (616)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 289 (616)
.|+.+...+.+.|++++|++.|++.+... +-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..+|
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 34444445555555555555555554432 1233444444445555553 555555555555543 33455555555566
Q ss_pred HhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc-CCChHHH-
Q 007134 290 SKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH-CGMVDEG- 364 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a- 364 (616)
.+.|++++|...|+++. ..+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.+ .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 66666666666666554 2355666666667777777777777777776642 1234566666666666 4444555
Q ss_pred ----HHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---------
Q 007134 365 ----FSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAG--LVKQAYEYIQNMLMPP-NAVIWRTLLGACTIHG--------- 427 (616)
Q Consensus 365 ----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g--------- 427 (616)
+..|+...+ +.|+ ...|..+..+|.+.| ++++|++.++++...| +...+..+...+...|
T Consensus 256 ~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 256 LEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 466666654 2243 667777777777777 5778888777775455 4567777887777763
Q ss_pred CcHHHHHHHHHH-HhcCCCCCCchhhhhHHhH
Q 007134 428 HSAIAEIARSTL-LQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 428 ~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~ 458 (616)
.+++|+.+++++ ++++|.....|..++..+.
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 258899999998 8899887776766665544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-11 Score=117.63 Aligned_cols=224 Identities=10% Similarity=-0.111 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhCCCCchhHHHH
Q 007134 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNNA 284 (616)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 284 (616)
..++..+...|.+.|++++|++.|++..+.+ +...+..+...+.. .+++++|...+.+..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444555555555555555555555555421 23344444445555 555555555555555543 3445555
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 285 LLDFYSK----CGIIIAAQRVFREMRK-RNAVSWSTLVVGLAV----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 285 li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
+..+|.. .|++++|.+.|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 5555555 5666666666655432 244555556666666 666666666666666544 334444555555
Q ss_pred hc----CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH--
Q 007134 356 SH----CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI-- 425 (616)
Q Consensus 356 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~-- 425 (616)
.. .+++++|...|+...+. .+...+..+...|.+ .+++++|.+.|++..-..+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 55 66666776666666542 234555556666666 66666666666554211224455555666665
Q ss_pred --cCCcHHHHHHHHHHHhcCCC
Q 007134 426 --HGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 426 --~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+++++|...++++++++|+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCH
T ss_pred CcccCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-12 Score=124.43 Aligned_cols=214 Identities=11% Similarity=-0.041 Sum_probs=146.4
Q ss_pred cCCchHHHHHHHHHHHCCCC---CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHH
Q 007134 121 SANPLLAVELYSKMHVSGIK---PDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDA 197 (616)
Q Consensus 121 ~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 197 (616)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677888888887765321 123456667777777888888888888887764 45677788888888888888888
Q ss_pred HHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhC
Q 007134 198 CKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVG 274 (616)
Q Consensus 198 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 274 (616)
.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888887653 35677888888888888888888888888764 3444444444555566678888888887766653
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007134 275 LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-------AVSWSTLVVGLAVNGFGKEALELFKEMEIG 339 (616)
Q Consensus 275 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 339 (616)
+++...+ .++..+...++.++|.+.++.....+ ..+|..+...|...|++++|...|++....
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2333333 35666666777777777777765542 345666666666666666666666666653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-11 Score=118.49 Aligned_cols=205 Identities=15% Similarity=0.013 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007134 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288 (616)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (616)
...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 4556666667777777777777777666542 2234444444444455555555555554444432 1
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHH
Q 007134 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSY 367 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 367 (616)
.+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|...
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334455555555556666666666665554222332 34455555566666666666666
Q ss_pred HHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 368 FKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 368 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+...|+.++|...++++++..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666542 1233556666777777777777777777665 2333 4566667777777777777888777777777777
Q ss_pred CCC
Q 007134 446 HSG 448 (616)
Q Consensus 446 ~~~ 448 (616)
++.
T Consensus 242 ~~~ 244 (252)
T 2ho1_A 242 SLE 244 (252)
T ss_dssp SHH
T ss_pred CHH
Confidence 543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-12 Score=134.33 Aligned_cols=344 Identities=12% Similarity=0.007 Sum_probs=231.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCc---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADV---RMGEQTHSVAIRNGFESLVFVQNSLVHMYA 189 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 189 (616)
.+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|.+.++.+.+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677788999999999999998876 334444455555666777 8999999988854 5556667777555
Q ss_pred hcC-----CHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCCcc---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch
Q 007134 190 AFG-----HVKDACKVFELMSER-DLVAWNSVINGFASNGKPN---EALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260 (616)
Q Consensus 190 ~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 260 (616)
..| +.++|.+.|++..++ +..++..|...|...+..+ ++++.+.+....|. ......+...+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 555 788999999887653 5567888888888876644 45555555555443 34555666777777766
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCCC---ChhhHHHHHHHHHHc----CCHHHHH
Q 007134 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG---IIIAAQRVFREMRKR---NAVSWSTLVVGLAVN----GFGKEAL 330 (616)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~----g~~~~A~ 330 (616)
+.+......+.+.-...+...+..|..+|.+.| +.++|.+.|+...+. +...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555555444443333334458888999999999 899999999887543 334446677777554 6899999
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHH-H--hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC-----CHHHHHH
Q 007134 331 ELFKEMEIGGFVPGEVTFVGVLYA-C--SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG-----LVKQAYE 402 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~ 402 (616)
+.|++.. .| +...+..+... + ...++.++|..+|+...+. | +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 43 33444445544 3 4689999999999998764 3 6777788888887 55 9999999
Q ss_pred HHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh----cccchHHHHHHHHHh
Q 007134 403 YIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY----EQRWLNVQEVRRTMV 474 (616)
Q Consensus 403 ~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~ 474 (616)
.|++.. .-+...+..|...|.. ..++++|...++++.+. .++.....|+.+|.. ..+.++|...++...
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999988 5577888888877765 34899999999998764 457788899999975 458899999999988
Q ss_pred hCCC
Q 007134 475 KERV 478 (616)
Q Consensus 475 ~~~~ 478 (616)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-11 Score=117.93 Aligned_cols=223 Identities=10% Similarity=-0.062 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-ChhhHHHHH
Q 007134 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK----CGIIIAAQRVFREMRKR-NAVSWSTLV 317 (616)
Q Consensus 243 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li 317 (616)
+..++..+...+...+++++|...+....+. .+...+..+..+|.. .|++++|.+.|++..+. +..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567777888889999999999999999984 356778889999999 99999999999987643 778899999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc----CCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 318 VGLAV----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH----CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 318 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
..|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|...|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 66778888888888 99999999999999874 2 5677888888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh--
Q 007134 390 LLGR----AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY-- 459 (616)
Q Consensus 390 ~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~-- 459 (616)
.|.+ .+++++|.+.|++..-..+...+..+...+.. .+++++|...++++++.+| +..+..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8988 99999999999877423467788889999999 9999999999999998876 6678899999999
Q ss_pred --cccchHHHHHHHHHhhCC
Q 007134 460 --EQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 460 --~g~~~~a~~~~~~m~~~~ 477 (616)
.+++++|.+.+++..+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999988765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=122.94 Aligned_cols=212 Identities=12% Similarity=0.059 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007134 209 LVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDF 288 (616)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 288 (616)
..+|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...+..+.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3445555555666666666666666655432 2233344444444444444444444444443332
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 289 YSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 289 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+
T Consensus 88 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 88 ------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 1233444445555555555555555555554432 123344555555555666666666666
Q ss_pred HHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 369 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
+.+.+. .+.+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|++++|...++++++++|++
T Consensus 149 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 655542 22335556666666666666666666665542 223 45667777777777777777777777777777776
Q ss_pred CCchhhhhHH
Q 007134 447 SGDYVLLSNL 456 (616)
Q Consensus 447 ~~~~~~l~~~ 456 (616)
+..+..+..+
T Consensus 227 ~~~~~~~~~l 236 (243)
T 2q7f_A 227 MLALHAKKLL 236 (243)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHHHH
Confidence 6555544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-11 Score=119.15 Aligned_cols=227 Identities=9% Similarity=-0.051 Sum_probs=178.2
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh----hHHHHHH
Q 007134 143 THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDL----VAWNSVI 216 (616)
Q Consensus 143 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~----~~~~~li 216 (616)
...+......+...|+++.|...++.+++.. +.+..++..+...|.+.|++++|.+.|++..+ ++. .+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456667788899999999999999999875 45566888899999999999999999998754 222 2488999
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHH-HHHHhcCCH
Q 007134 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALL-DFYSKCGII 295 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~y~~~g~~ 295 (616)
..|...|++++|++.|++..+.. +.+..++..+...+...|++++|...+..+.+.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998864 3355788899999999999999999999988763 55677777777 5554 4599
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CcCCH------HHHHHHHHHHhcCCChH
Q 007134 296 IAAQRVFREMRK---RNAVSWSTLVVGLAVNGF---GKEALELFKEMEIGG-FVPGE------VTFVGVLYACSHCGMVD 362 (616)
Q Consensus 296 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 362 (616)
++|.+.|+++.+ .+...|..+...+...|+ +++|...|++..+.. -.|+. ..+..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998763 356778888888888888 888998888887531 12331 35556666677777777
Q ss_pred HHHHHHHHhHH
Q 007134 363 EGFSYFKRMKD 373 (616)
Q Consensus 363 ~a~~~~~~m~~ 373 (616)
+|...|+.+.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=122.52 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=154.4
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
.....+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|++.|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455667777888889999999999988754 367788889999999999999999999998753 235678888889
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAI 431 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~ 431 (616)
.+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++. ..| +..++..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999874 33467889999999999999999999998873 334 67889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 432 AEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 432 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999989999999999999999999999998764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-11 Score=114.34 Aligned_cols=166 Identities=14% Similarity=-0.011 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHH
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVN-GFGKEALELFKEMEIGGFVPG-EVTFVGVLYAC 355 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 355 (616)
++..+...|...|++++|.+.|+++. ..+..+|..+...+... |++++|+..|+++.+.+..|+ ...+..+...+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 33444444444444444444444332 12344455555555555 555566665555554222232 24445555555
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CC--CcHHHHHHHHHHHHHcCCcHHH
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MP--PNAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~--pd~~~~~~ll~a~~~~g~~~~a 432 (616)
...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|.+.+++.. .. .+...+..+...+...|+.+.+
T Consensus 124 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 5666666666666655542 12235555566666666666666666665541 11 2444555555555666666666
Q ss_pred HHHHHHHHhcCCCCCC
Q 007134 433 EIARSTLLQLEPKHSG 448 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~ 448 (616)
...++.+.+..|+++.
T Consensus 202 ~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhCCCCHH
Confidence 6666666666666543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=134.09 Aligned_cols=265 Identities=11% Similarity=-0.023 Sum_probs=150.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--C-Ch----hHHHHHHHHHHhCCCccHHHHHHHHHHHC----CC-CCCHHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSE--R-DL----VAWNSVINGFASNGKPNEALTLFREMASE----GV-EPDGYTM 247 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~ 247 (616)
.+..+...|...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++.... +- .....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344555666677777777777766542 2 22 35666666666667777777666665432 10 1112334
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007134 248 VSLFSACAELGALALGRRAHTYVWKV----G-LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV 322 (616)
Q Consensus 248 ~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 322 (616)
..+...+...|++++|...+..+.+. + .+. ...++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS-------------------------------EGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH-------------------------------HHHHHHHHHHHHHH
Confidence 44444445555555555555444332 0 011 12244445555555
Q ss_pred cCC-----------------HHHHHHHHHHHHhC----CCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC
Q 007134 323 NGF-----------------GKEALELFKEMEIG----GFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK 380 (616)
Q Consensus 323 ~g~-----------------~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 380 (616)
.|+ +++|++.+++..+. +..| ...++..+...+...|++++|...|++..+...-.++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 55555555544321 1111 1234555566666677777777776666542211111
Q ss_pred ----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-----CCC---cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--
Q 007134 381 ----IEHFGCMVDLLGRAGLVKQAYEYIQNML-----MPP---NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH-- 446 (616)
Q Consensus 381 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p---d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-- 446 (616)
...+..+...|...|++++|.+.+++.. ... ...++..+...+...|++++|...+++++++.+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2256667777777777777777776541 111 14567777777888888888888888876654432
Q ss_pred ----CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 447 ----SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 447 ----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+..++.+|...|++++|.+.+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23566788888888888888888877754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-11 Score=116.08 Aligned_cols=198 Identities=12% Similarity=0.021 Sum_probs=170.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Q 007134 277 DNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLY 353 (616)
Q Consensus 277 ~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 353 (616)
.+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|.+.|+++.... +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 356677788888999999999999998765 3467789999999999999999999999998753 335678888889
Q ss_pred HHhcC-CChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCc
Q 007134 354 ACSHC-GMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 354 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~ 429 (616)
.+... |++++|...++.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++. ..| +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999986 234444 6788899999999999999999998873 344 578899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 430 AIAEIARSTLLQLEP-KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++|...++++++..| .++..+..++.++...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88888888889999999999999999988653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.5e-11 Score=114.23 Aligned_cols=194 Identities=12% Similarity=-0.029 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSAC 254 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 254 (616)
..++..+...|...|++++|.+.|+++.+ .+..+|..+...|.+.|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 57888999999999999999999998753 467789999999999999999999999998764 34666777777788
Q ss_pred HhcCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHH
Q 007134 255 AELGALALGRRAHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
...|++++|..++..+.+.+. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888887766322 23455666666777777777777777766532 24556666666666666666666
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
..|+++.+.. +.+...+..+...+...|+.++|..+++.+.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666665532 23344455555556666666666666666654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-12 Score=130.40 Aligned_cols=272 Identities=12% Similarity=-0.003 Sum_probs=138.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-C----hhHHHHHHHHHHhCCCccHHHHHHHHHHHC----CCCCC-H
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSE--R-D----LVAWNSVINGFASNGKPNEALTLFREMASE----GVEPD-G 244 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 244 (616)
....+..+...+.+.|++++|...|++..+ + + ..+|..+...|...|++++|+..|++.... +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566666666666666666665532 2 2 234556666666666666666666655321 11111 2
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc
Q 007134 245 YTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN 323 (616)
Q Consensus 245 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 323 (616)
.++..+...+...|++++|...+..+.+... .++.. ....++..+...|...
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV---------------------------GEARALYNLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc---------------------------chHHHHHHHHHHHHHc
Confidence 2344444445555555555555554433210 00000 0022344444444555
Q ss_pred CC--------------------HHHHHHHHHHHHhC----CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCC
Q 007134 324 GF--------------------GKEALELFKEMEIG----GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378 (616)
Q Consensus 324 g~--------------------~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 378 (616)
|+ +++|++.+++.... +..|. ..++..+...+...|++++|...++...+...-.
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 55 55555555443321 11111 1344455555556666666666665554321111
Q ss_pred CC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC----CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 379 PK----IEHFGCMVDLLGRAGLVKQAYEYIQNML----MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 379 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
++ ...+..+...|...|++++|...+++.. ..++ ..++..+...+...|++++|...+++++++.+..
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 11 2245556666666666666666665441 0011 3456666666677777777777777666554332
Q ss_pred ------CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 447 ------SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 447 ------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+..++.+|...|++++|.+.+++..+
T Consensus 301 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23455667777777777777777666543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-12 Score=125.96 Aligned_cols=197 Identities=13% Similarity=-0.015 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCC--------------------HHHHH
Q 007134 280 NVNNALLDFYSKCGIIIAAQRVFREMRK-----RN----AVSWSTLVVGLAVNGF--------------------GKEAL 330 (616)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 330 (616)
.++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3444555555555665555555554331 11 2255556666666666 66666
Q ss_pred HHHHHHHhC----CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHH
Q 007134 331 ELFKEMEIG----GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAY 401 (616)
Q Consensus 331 ~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 401 (616)
+.+++.... +..|. ...+..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655431 11111 235566666777778888888777776543211122 336777778888888888888
Q ss_pred HHHHhCC----CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchhhhhHHhHhcccchHHH
Q 007134 402 EYIQNML----MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYVLLSNLYAYEQRWLNVQ 467 (616)
Q Consensus 402 ~~~~~m~----~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~ 467 (616)
+.+++.. ..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 8886651 1111 4577778888888899999999988887665442 225667888899999999999
Q ss_pred HHHHHHhhC
Q 007134 468 EVRRTMVKE 476 (616)
Q Consensus 468 ~~~~~m~~~ 476 (616)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 998887653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=8.9e-12 Score=126.72 Aligned_cols=226 Identities=11% Similarity=0.051 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CChhhHHHHHHHH
Q 007134 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGI-IIAAQRVFREMRK---RNAVSWSTLVVGL 320 (616)
Q Consensus 245 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~f~~m~~---~~~~~~~~li~~~ 320 (616)
..|..+..++...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|+..|++... .+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 466677778889999999999999999875 5678899999999999997 9999999998763 4778999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh-cCCHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR-AGLVKQ 399 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~ 399 (616)
...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..|+++.+. -+-+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999853 225678888999999999999999999999863 23358889999999999 666577
Q ss_pred H-----HHHHHhC-CCCC-cHHHHHHHHHHHHHcC--CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc---------
Q 007134 400 A-----YEYIQNM-LMPP-NAVIWRTLLGACTIHG--HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ--------- 461 (616)
Q Consensus 400 A-----~~~~~~m-~~~p-d~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g--------- 461 (616)
| ++.|++. ...| +...|..+...+...| ++++|...++++ +.+|+++..+..++.+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4677665 3566 6789999999998888 699999999998 889998888999999999875
Q ss_pred cchHHHHHHHHH-hh
Q 007134 462 RWLNVQEVRRTM-VK 475 (616)
Q Consensus 462 ~~~~a~~~~~~m-~~ 475 (616)
.+++|.++++++ .+
T Consensus 333 ~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 333 ILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 358999999988 55
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-11 Score=125.72 Aligned_cols=292 Identities=13% Similarity=0.022 Sum_probs=161.9
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHHcCCCcHHHHHHHHHHHHh----CCC-
Q 007134 106 PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT-----HTYPFLLKAISKLADVRMGEQTHSVAIRN----GFE- 175 (616)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~- 175 (616)
.....|......+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...+..+++. +..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 344555666666777777777777777776642 332 34555556666666776666666665432 111
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHHHHhCCC--------------------cc
Q 007134 176 SLVFVQNSLVHMYAAFGHVKDACKVFELMSE-----RD----LVAWNSVINGFASNGK--------------------PN 226 (616)
Q Consensus 176 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~ 226 (616)
....++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1234556666666666777666666655432 11 2245555555555555 45
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGL-SDNVNVNNALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 305 (616)
+|+..|.+....- .+.+. +....++..+...|...|++++|.+.|++.
T Consensus 165 ~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 165 AAVDFYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5554444432210 00010 011234444555555555555555555544
Q ss_pred CC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHh
Q 007134 306 RK-----RN----AVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRM 371 (616)
Q Consensus 306 ~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 371 (616)
.+ ++ ..+|..+...|...|++++|+..+++.... +..+. ..++..+...+...|++++|...++..
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 31 11 225566666666777777777777665432 11111 345666667777777777777777776
Q ss_pred HHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-cHHHHHHHHHHHHHcCCcH
Q 007134 372 KDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPP-NAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 372 ~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-d~~~~~~ll~a~~~~g~~~ 430 (616)
.+...-.++ ...+..+...|.+.|++++|.+.+++. +..+ ...++..+...+...|+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 543211122 456677777888888888887777654 1122 2456777777777777664
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=126.39 Aligned_cols=276 Identities=14% Similarity=0.033 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCc-----chHHHHHHHHHcCCCcHHHHHHHHHHHHh----C-CCCcH
Q 007134 109 FTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDT-----HTYPFLLKAISKLADVRMGEQTHSVAIRN----G-FESLV 178 (616)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~ 178 (616)
..+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++.+++. + .+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34455666677777777777777777764 2332 24455555566666666666666655442 1 01122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHC----CC-CCCHHHHHHHHHH
Q 007134 179 FVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASE----GV-EPDGYTMVSLFSA 253 (616)
Q Consensus 179 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~a 253 (616)
.++..+...|...|++++|.+.| ++.... +- .....++..+...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICC-------------------------------ERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-------------------------------HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH-------------------------------HHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 34444444555555555555444 443321 00 1112344455555
Q ss_pred HHhcCc-----------------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhhHH
Q 007134 254 CAELGA-----------------LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR--NAVSWS 314 (616)
Q Consensus 254 ~~~~~~-----------------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~ 314 (616)
+...|+ +++|...+.+..+. +.....+ ...+|.
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~ 227 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGDRGAQGRACG 227 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCCHHHHHHHHH
Confidence 555555 44444444433221 1111100 112333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-cCC----HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHH
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGF-VPG----EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFG 385 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~ 385 (616)
.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|...|+...+...-..+ ...+.
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 307 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444444444444444332100 001 124445555555566666666655555432111111 34566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNML-------MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~-------~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+...|.+.|++++|.+.+++.. ..+ ...++..+...+...|++++|...+++++++.+.
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 66677777777777777766541 111 2357777888889999999999999998877654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-12 Score=132.97 Aligned_cols=208 Identities=10% Similarity=-0.064 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII-IAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~-~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
+.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444443332 234667777777888888888 88888887764 235778888999999999999999999998
Q ss_pred HhCCCcCCHHHHHHHHHHHhcC---------CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc--------CCHHH
Q 007134 337 EIGGFVPGEVTFVGVLYACSHC---------GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA--------GLVKQ 399 (616)
Q Consensus 337 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 399 (616)
.+. .|+...+..+...+... |++++|...|++..+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57778888888889888 9999999999998863 234478899999999988 99999
Q ss_pred HHHHHHhCC-CCC----cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 400 AYEYIQNML-MPP----NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 400 A~~~~~~m~-~~p----d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998873 455 67899999999999999999999999999999999999999999999999999998765443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-11 Score=109.30 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=100.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 3455555566666666666666666655532 113345555555666666666666666665542 2223445555556
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHH
Q 007134 390 LLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQ 467 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 467 (616)
.+...+++++|.+.+++.. ..| +..++..+...+...|++++|+..++++++++|+++..+..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666665542 233 45666667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhC
Q 007134 468 EVRRTMVKE 476 (616)
Q Consensus 468 ~~~~~m~~~ 476 (616)
+.+++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 777766553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-11 Score=118.89 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-cHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNML-------MPP-NAV 414 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-d~~ 414 (616)
++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|...+++.. ..+ ...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3444444555555555555555544332111111 3445566666666677776666665541 111 134
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
++..+...+...|++++|...+++++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6777788888888888888888888776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-08 Score=110.21 Aligned_cols=398 Identities=7% Similarity=-0.002 Sum_probs=256.8
Q ss_pred hHhhHHHHHHhh--cCHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCC---HHHHHHHHhhCC--C---CChhHH
Q 007134 42 VRKCITLLQVCA--SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFP---MSYAHNIFSHVQ--D---PNIFTW 111 (616)
Q Consensus 42 ~~~~~~~l~ac~--~~~~~~~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~---~~~A~~~f~~m~--~---~~~~~~ 111 (616)
...+..+++.+. +....++.++..+++.- |.....|...+.+-.+.+ + .+.++.+|++.. . |++..|
T Consensus 66 ~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~-~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 66 IFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKM-EELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 345566666654 36778888888888764 567778888888877777 7 888888888643 2 778888
Q ss_pred HHHHHHHHhcCCc--------hHHHHHHHHHHHC-CC-CCCc-chHHHHHHHHHc---------CCCcHHHHHHHHHHHH
Q 007134 112 NTMIRGYAESANP--------LLAVELYSKMHVS-GI-KPDT-HTYPFLLKAISK---------LADVRMGEQTHSVAIR 171 (616)
Q Consensus 112 ~~li~~~~~~g~~--------~~A~~l~~~m~~~-g~-~pd~-~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 171 (616)
..-+....+.++. +...++|+..+.. |. .|+. ..|...+..... .+.++.++.+|..++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8877766555543 2234677766543 55 5544 345444443322 2345677788888775
Q ss_pred hCCCCcHHHHHHHHH---HH----------HhcCCHHHHHHHHhhc-------CC--------------C--C------h
Q 007134 172 NGFESLVFVQNSLVH---MY----------AAFGHVKDACKVFELM-------SE--------------R--D------L 209 (616)
Q Consensus 172 ~g~~~~~~~~~~Li~---~y----------~~~g~~~~A~~~f~~~-------~~--------------~--~------~ 209 (616)
.....-..+|..... .+ -...+++.|...+.++ .. | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 322222233321111 10 0012334445544331 00 0 0 1
Q ss_pred hHHHHHHHHHHhCCC-------ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHH-HHHHHHHHhCCCCchhH
Q 007134 210 VAWNSVINGFASNGK-------PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR-RAHTYVWKVGLSDNVNV 281 (616)
Q Consensus 210 ~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~ 281 (616)
..|...+.---.++. .+.+..+|++.+.. .+-+...|.....-+...|+.+.|. .+++..+.. ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 235555443322221 23345667777654 3445666767777777788888886 999998875 3566777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 282 NNALLDFYSKCGIIIAAQRVFREMRK-------------RN------------AVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 282 ~~~li~~y~~~g~~~~A~~~f~~m~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
+-..+...-+.|+++.|.++|+.+.. |+ ...|...+....+.|..+.|..+|.+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888999999999999987753 21 235777777777888999999999998
Q ss_pred HhC-CC-cCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC--
Q 007134 337 EIG-GF-VPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-- 411 (616)
Q Consensus 337 ~~~-g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-- 411 (616)
.+. +. .+......+.+.-. ..++.+.|..+|+...+.+ +.+...|...++.....|+.+.|..+|++.- ..|
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 875 21 12222222333322 2356899999999998854 3456677888888888999999999998863 223
Q ss_pred --cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 412 --NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 412 --d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 346888888888999999999999999999999854
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-10 Score=111.16 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=162.3
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 226 NEALTLFREMASEGVEPDGYTMVSLFSACA-------ELGAL-------ALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
++|+.+|++..... +-+...|......+. ..|+. ++|..++++.++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666776666542 334445555555443 34665 7888888887773224456678888888888
Q ss_pred cCCHHHHHHHHHhcCC--C-Chh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH-hcCCChHHHHH
Q 007134 292 CGIIIAAQRVFREMRK--R-NAV-SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC-SHCGMVDEGFS 366 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 366 (616)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999998888764 2 343 78888888889999999999999988754 22334444333332 23699999999
Q ss_pred HHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--cHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML----MPP--NAVIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 367 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p--d~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
+|+...+.. +.+...|..++..+.+.|++++|..+|++.. ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988743 3357889999999999999999999998772 355 35789999999999999999999999999
Q ss_pred hcCCCCCCc
Q 007134 441 QLEPKHSGD 449 (616)
Q Consensus 441 ~~~p~~~~~ 449 (616)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 999986543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=109.18 Aligned_cols=167 Identities=14% Similarity=0.038 Sum_probs=138.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYA 354 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 354 (616)
+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567788888888888999999888887653 467788888999999999999999999887753 2244566667778
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a 432 (616)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988763 3345778889999999999999999999877 3455 678999999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 007134 433 EIARSTLLQLEPKHS 447 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~ 447 (616)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-10 Score=118.44 Aligned_cols=228 Identities=7% Similarity=-0.001 Sum_probs=138.6
Q ss_pred HHHHhCCCccHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhC--C----CCchhHHHHH
Q 007134 217 NGFASNGKPNEALTLFREMASE----GVEP-DGYTMVSLFSACAELGALALGRRAHTYVWKVG--L----SDNVNVNNAL 285 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~~l 285 (616)
..+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+.. . +....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444555555555555555432 1011 12344455555555555555555555554321 1 0113455666
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-cCCHHHHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRK-----RN----AVSWSTLVVGLAVNGFGKEALELFKEMEIG----GF-VPGEVTFVGV 351 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~l 351 (616)
...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|++.|++..+. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 6777777777777777765542 11 236677777888888888888888777651 22 2234567777
Q ss_pred HHHHhcCCChHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCC---HHHHHHHHHhCCCCCc-HHHHHHHHHHHH
Q 007134 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRAGL---VKQAYEYIQNMLMPPN-AVIWRTLLGACT 424 (616)
Q Consensus 352 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~pd-~~~~~~ll~a~~ 424 (616)
...+.+.|++++|...++...+...-..+ ...+..+...|...|+ +++|+.++++.+..|+ ..++..+...+.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 77888888888888888776553211112 2335567777777887 7888888888765443 346667777788
Q ss_pred HcCCcHHHHHHHHHHHhcCC
Q 007134 425 IHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p 444 (616)
..|++++|...+++++++..
T Consensus 351 ~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 88888888888887765443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=120.11 Aligned_cols=239 Identities=13% Similarity=0.026 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhcCC--------C---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHH
Q 007134 178 VFVQNSLVHMYAAFGHVKDACKVFELMSE--------R---DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYT 246 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 246 (616)
..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|+..|++.....-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------ 100 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE------ 100 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------
Confidence 44556666666666666666666655432 1 123455555555555555555555555443200
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHH
Q 007134 247 MVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-------R----NAVSWST 315 (616)
Q Consensus 247 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~ 315 (616)
.......+....++..+...|...|++++|.+.|++..+ + ...++..
T Consensus 101 ----------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 101 ----------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ----------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ----------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 000000111233344444445555555555554444321 0 1234555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC------CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhh------CCCCCh-
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIG------GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEY------GIMPKI- 381 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~- 381 (616)
+...|...|++++|++.|+++... +..|+ ..++..+...+...|++++|...|+.+.+.. ...+..
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 555566666666666666655442 11222 2345555566666666666666666665421 011111
Q ss_pred hh------HHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 382 EH------FGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 382 ~~------~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
.. +..+...+...+.+.+|...++... ..| +..+|..+..++...|++++|...+++++++.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11 1111122222333333333333332 222 234555555555566666666666655555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=121.83 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=132.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRK-----------RNAVSWSTLVVGLAVNGFGKEALELFKEMEIG------GF 341 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 341 (616)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|++.|++..+. +.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455566666666666666666655431 13457888899999999999999999998764 22
Q ss_pred cC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh-----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC------
Q 007134 342 VP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-----GIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML------ 408 (616)
Q Consensus 342 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~------ 408 (616)
.| ....+..+...+...|++++|..+|+.+.+.. +..|. ...+..+...|.+.|++++|.+.++++.
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 23 23567788889999999999999999987631 11222 5578889999999999999999997762
Q ss_pred ----CCCc-------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 409 ----MPPN-------AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 409 ----~~pd-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+. ...+..+...+...+.+.++...++++....|..+..+..++.+|.+.|++++|.+.+++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 122333334455666777778888888877888788899999999999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-09 Score=107.91 Aligned_cols=83 Identities=16% Similarity=0.016 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CcCC--HHHHHHHHHHHhcCCChHHHH
Q 007134 292 CGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG-FVPG--EVTFVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~~~a~ 365 (616)
.|+.++|.++|+...+ .+...|..++..+.+.|+.++|..+|++..... +.|+ ...|..++....+.|+.+.|.
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4555555555555432 245556666666666666666666666666542 2332 345555555566666666666
Q ss_pred HHHHHhHHh
Q 007134 366 SYFKRMKDE 374 (616)
Q Consensus 366 ~~~~~m~~~ 374 (616)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-08 Score=109.52 Aligned_cols=410 Identities=10% Similarity=0.005 Sum_probs=275.6
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC---chHHHHHHHHHHH
Q 007134 63 HAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESAN---PLLAVELYSKMHV 136 (616)
Q Consensus 63 h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~ 136 (616)
+...++.. |.|...|..++...-+.+ .++.|+.+|+.+.. .....|..-+..-.+.|+ .+.+..+|++.+.
T Consensus 55 lE~~l~~n--p~d~~~W~~yi~~~~~~~-~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~ 131 (679)
T 4e6h_A 55 LNDMIEEQ--PTDIFLYVKLLKHHVSLK-QWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLS 131 (679)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTC
T ss_pred HHHHHHHC--cCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHH
Confidence 34444444 578999999999999988 89999999998753 466789999998888898 9999999999987
Q ss_pred CC-CCCCcchHHHHHHHHHcCCCc--------HHHHHHHHHHHH-hCC-CCc-HHHHHHHHHHHH---------hcCCHH
Q 007134 137 SG-IKPDTHTYPFLLKAISKLADV--------RMGEQTHSVAIR-NGF-ESL-VFVQNSLVHMYA---------AFGHVK 195 (616)
Q Consensus 137 ~g-~~pd~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~Li~~y~---------~~g~~~ 195 (616)
.. ..|+...|..-+....+.++. +...++|+.++. .|. .++ ..+|...+.... ..++++
T Consensus 132 ~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~ 211 (679)
T 4e6h_A 132 KELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQ 211 (679)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHH
Confidence 64 136776776666555444443 345578887765 365 453 568887776543 345678
Q ss_pred HHHHHHhhcCC-C--Ch-hHHH---HHHHHHH----------hCCCccHHHHHHHHHHH--CCCC---------------
Q 007134 196 DACKVFELMSE-R--DL-VAWN---SVINGFA----------SNGKPNEALTLFREMAS--EGVE--------------- 241 (616)
Q Consensus 196 ~A~~~f~~~~~-~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~--~g~~--------------- 241 (616)
.+.++|++... | +. ..|. .+...+. ...+++.|...+.++.. .++.
T Consensus 212 ~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~ 291 (679)
T 4e6h_A 212 YIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNL 291 (679)
T ss_dssp HHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTS
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccC
Confidence 89999998875 2 11 2332 2222110 01122334444444321 1111
Q ss_pred C-----CH---HHHHHHHHHHHhcC-------chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhc
Q 007134 242 P-----DG---YTMVSLFSACAELG-------ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQ-RVFREM 305 (616)
Q Consensus 242 p-----~~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~f~~m 305 (616)
| +. ..|...+.---..+ ..+.+..+|++++.. ++.+..+|-..+..+...|+.++|. ++|++.
T Consensus 292 p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 292 PKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1 00 12222222211111 123355678887776 3557788888888888899999996 999886
Q ss_pred CC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---------cCC------------HHHHHHHHHHHhcCCCh
Q 007134 306 RK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF---------VPG------------EVTFVGVLYACSHCGMV 361 (616)
Q Consensus 306 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~ 361 (616)
.. .+...|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|.+
T Consensus 371 i~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l 450 (679)
T 4e6h_A 371 QQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL 450 (679)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence 53 3556688888888899999999999999886310 142 23577777777788999
Q ss_pred HHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHH
Q 007134 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG-LVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARST 438 (616)
Q Consensus 362 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~ 438 (616)
+.|..+|..+.+.. -......|...+.+-.+.| +.+.|.++|+..- ..-+...|...+.-....|+.+.|..+|++
T Consensus 451 ~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 451 AASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999998731 1123444544444444554 4899999998762 223667788888888889999999999999
Q ss_pred HHhcCCC---CCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 439 LLQLEPK---HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 439 ~~~~~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
++...|+ ....+......-.+.|..+.+.++.+++.+.-
T Consensus 530 al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9988774 23345566666678899999999999998753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.9e-10 Score=113.02 Aligned_cols=220 Identities=7% Similarity=-0.121 Sum_probs=149.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----C----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCC--C---CC-CHHHHH
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE-----R----DLVAWNSVINGFASNGKPNEALTLFREMASEG--V---EP-DGYTMV 248 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p-~~~t~~ 248 (616)
+...|...|++++|.+.|++..+ + ...+|..+...|...|++++|+..+.+..+.- . .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55566777777777777776543 2 23457777777777888887777777765421 1 11 124566
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHH
Q 007134 249 SLFSACAELGALALGRRAHTYVWKV----GLS-DNVNVNNALLDFYSKCGIIIAAQRVFREMRK-----RN----AVSWS 314 (616)
Q Consensus 249 ~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~ 314 (616)
.+...+...|++++|...+..+.+. +.. ....++..+..+|...|++++|.+.|++..+ .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777888888888887776653 111 1124677788888888888888888877653 22 34677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC----CCcCCHHHHHHHHHHHhcCCC---hHHHHHHHHHhHHhhCCCCC-hhhHHH
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIG----GFVPGEVTFVGVLYACSHCGM---VDEGFSYFKRMKDEYGIMPK-IEHFGC 386 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~-~~~~~~ 386 (616)
.+...|...|++++|.+.+++..+. +-+.....+..+...+...|+ +++|..+++... ..|+ ...+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~----~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM----LYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----CHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----CHHHHHHHHHH
Confidence 7888888899999999988887652 111122335667777888888 777777777662 2233 556778
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 007134 387 MVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m 407 (616)
+...|.+.|++++|.+.+++.
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 889999999999999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-10 Score=127.99 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=79.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLY 353 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 353 (616)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 345555555555555555555555555431 23445555555555555555555555555542 232 344445555
Q ss_pred HHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcH
Q 007134 354 ACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 354 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~ 430 (616)
++...|++++|.+.|++..+. .|+ ...|+.+..+|.+.|++++|++.|++. ...| +...|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 555555555555555554431 122 444444555555555555555554443 2333 2344444444555555555
Q ss_pred HHHHHHHHHHhcC
Q 007134 431 IAEIARSTLLQLE 443 (616)
Q Consensus 431 ~a~~~~~~~~~~~ 443 (616)
+|.+.+++++++.
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 5555555444433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-10 Score=101.62 Aligned_cols=160 Identities=12% Similarity=-0.040 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhc
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSH 357 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 357 (616)
.+..+...|...|++++|.+.|+++.+. +...|..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555432 33444555555555555555555555554421 1123334444444444
Q ss_pred CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARS 437 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~ 437 (616)
.|++++|...|+.+.+. . +.+...+..+...+...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~--~--------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--N--------------------------------PINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--C--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--C--------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 44444444444444331 1 1234455555555555555555555555
Q ss_pred HHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 438 TLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 438 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
++++..|.++..+..++.+|...|++++|.+.++...+
T Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.6e-09 Score=104.73 Aligned_cols=193 Identities=15% Similarity=0.012 Sum_probs=97.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----cCCHHH
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRK-------R----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF----VPGEVT 347 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t 347 (616)
+.+...|...|++++|...|++... + ....+..+...+...|++++|...+++...... .....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3344445555555555555544321 0 112334445555566666666666665543211 011234
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCC-----cHHHH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFG-----CMVDLLGRAGLVKQAYEYIQNML-MPP-----NAVIW 416 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~-~~p-----d~~~~ 416 (616)
+..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++.. ..| ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44555556666666666666666543211111111111 12233556677777766666652 111 12244
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+...+...|++++|...++++++..+.. ...+..++.+|...|+.++|...++...+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555666666777777777776665433221 12344566667777777777777666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-09 Score=97.64 Aligned_cols=169 Identities=15% Similarity=0.007 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHH
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGL 320 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~ 320 (616)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3466777888899999999999999887653 4567888999999999999999999999875 34677899999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
...|++++|.+.|+++.... +.+...+..+...+...|++++|..+++.+.+. . |
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~-~--------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--R-P--------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C-T---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--C-c---------------------
Confidence 99999999999999998753 234566666667777777777777777776542 1 1
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 401 ~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
.+..++..+...+...|++++|...++++++..|+++.
T Consensus 142 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 142 ----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred ----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 13445556666666667777777777777666666443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.8e-10 Score=116.02 Aligned_cols=192 Identities=12% Similarity=-0.036 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007134 178 VFVQNSLVHMYAAFGHV-KDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA 253 (616)
Q Consensus 178 ~~~~~~Li~~y~~~g~~-~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 253 (616)
...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|++.|++..+. .|+...+..+..+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~ 179 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHH
Confidence 34444444444444444 444444444321 22344455555555555555555555555443 2444444455555
Q ss_pred HHhc---------CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------CCHHHHHHHHHhcCC------CCh
Q 007134 254 CAEL---------GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC--------GIIIAAQRVFREMRK------RNA 310 (616)
Q Consensus 254 ~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--------g~~~~A~~~f~~m~~------~~~ 310 (616)
+... |++++|...+.++++.. +.+...+..+..+|... |++++|.+.|++..+ .+.
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 258 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH
Confidence 5555 55555555555555543 33455555566666655 666666666665542 355
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
..|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+..+..
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 667777777777777777777777776632 12334566666777777777777777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=111.57 Aligned_cols=223 Identities=12% Similarity=0.032 Sum_probs=99.3
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhC--CC----CchhHHHHH
Q 007134 217 NGFASNGKPNEALTLFREMASEGV-EPD----GYTMVSLFSACAELGALALGRRAHTYVWKVG--LS----DNVNVNNAL 285 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~----~~~~~~~~l 285 (616)
..+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+....+.. .. ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666666543210 011 2344455555556666666666555554321 00 012344455
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcCCHHHHHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRK-----RN----AVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVPGEVTFVGVL 352 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 352 (616)
...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|++.|++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 5555555555555555544321 11 223444555555555555555555554430 1111133444444
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhcCC---HHHHHHHHHhCCCCCcH-HHHHHHHHHHHH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRAGL---VKQAYEYIQNMLMPPNA-VIWRTLLGACTI 425 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~pd~-~~~~~ll~a~~~ 425 (616)
..+.+.|++++|...++...+...-.++ ...+..+...+...|+ +.+|+..+++....|+. ..+..+...+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 5555555555555555554432111111 2223333334444444 44444444443322221 233334444444
Q ss_pred cCCcHHHHHHHHHH
Q 007134 426 HGHSAIAEIARSTL 439 (616)
Q Consensus 426 ~g~~~~a~~~~~~~ 439 (616)
.|++++|...++++
T Consensus 349 ~g~~~~A~~~~~~a 362 (378)
T 3q15_A 349 SCHFEQAAAFYRKV 362 (378)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44444444444444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-08 Score=103.95 Aligned_cols=222 Identities=8% Similarity=-0.083 Sum_probs=117.8
Q ss_pred HHHHhcCchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C-----ChhhHHHH
Q 007134 252 SACAELGALALGRRAHTYVWKVG--LS---DNVNVNNALLDFYSKCGIIIAAQRVFREMRK-----R-----NAVSWSTL 316 (616)
Q Consensus 252 ~a~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~-----~~~~~~~l 316 (616)
..+...|++++|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ . ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34456666666666666665431 11 1234555666666666666666666655431 1 12345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh---CCCCChhhHHHHH
Q 007134 317 VVGLAVNGFGKEALELFKEMEIG----GFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY---GIMPKIEHFGCMV 388 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li 388 (616)
...|...|++++|++.|++..+. +..+ ...++..+...+...|++++|...|++..+.. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 66666666666666666665432 1111 12345556666666666666666666655411 1112245566666
Q ss_pred HHHHhcCCHHHHHHHHHhCC------CCCc-HHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 389 DLLGRAGLVKQAYEYIQNML------MPPN-AVIWRTLLGACTIHGH---SAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m~------~~pd-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
..|.+.|++++|.+.+++.- -.|. ...+..+...+...++ +++|...+++. ...|.....+..++..|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 66666666666666665541 1121 2334444444455555 55555555542 111222334455666666
Q ss_pred hcccchHHHHHHHHHh
Q 007134 459 YEQRWLNVQEVRRTMV 474 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~ 474 (616)
..|++++|.+.+++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6666666666666554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=9.7e-10 Score=103.32 Aligned_cols=187 Identities=12% Similarity=-0.055 Sum_probs=115.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRK----RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVL 352 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 352 (616)
++..+..+...|.+.|++++|.+.|+...+ ++...|..+..++...|++++|++.|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445666667777777777777777776542 45556666777777777777777777777663 333 34566666
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc---HHHHHHHHH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKI-------EHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN---AVIWRTLLG 421 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd---~~~~~~ll~ 421 (616)
..+...|++++|...|+...+.. +.+. ..|..+...+.+.|++++|++.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 67777777777777777776531 1223 34666666667777777777777665 34555 345555555
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+.. .+...++++..+.+.++..|. .......+.+++|...+++..+
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 5543 334445555555554433332 2223445666888888888765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-08 Score=101.82 Aligned_cols=259 Identities=11% Similarity=-0.023 Sum_probs=133.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHcCCCcHHHHHHHHHHHHhCC-CCc----HHHHHHH
Q 007134 114 MIRGYAESANPLLAVELYSKMHVSGIKPDTH----TYPFLLKAISKLADVRMGEQTHSVAIRNGF-ESL----VFVQNSL 184 (616)
Q Consensus 114 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~L 184 (616)
+...+...|++++|...+++.+......+.. ++..+...+...|+++.|.+.+...++... ..+ ..+.+.+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777777766543111111 233344455566777777766666654210 011 2234556
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCC--C--CHHHHHH
Q 007134 185 VHMYAAFGHVKDACKVFELMSE-------R----DLVAWNSVINGFASNGKPNEALTLFREMASEGVE--P--DGYTMVS 249 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ 249 (616)
...|...|++++|.+.+++..+ + ...++..+...|...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6667777777777776665431 1 1223455566666777777777777666543211 1 1234555
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhCCCCc--hhHH-H---HHHHHHHhcCCHHHHHHHHHhcCCCCh-------hhHHHH
Q 007134 250 LFSACAELGALALGRRAHTYVWKVGLSDN--VNVN-N---ALLDFYSKCGIIIAAQRVFREMRKRNA-------VSWSTL 316 (616)
Q Consensus 250 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~-~---~li~~y~~~g~~~~A~~~f~~m~~~~~-------~~~~~l 316 (616)
+...+...|++++|...++......-.++ .... . ..+..+...|++++|...+++....+. ..+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55566666777777776666654311111 1111 1 223345566777777777666654321 134455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCcCCH-HHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 317 VVGLAVNGFGKEALELFKEMEIG----GFVPGE-VTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55666666666666666655431 111111 133333344445555555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-09 Score=100.19 Aligned_cols=203 Identities=11% Similarity=0.021 Sum_probs=157.7
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHH
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVV 318 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 318 (616)
.|...+......+...|++++|...+..+++...+++...+..+..+|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888899999999999999999999987446777777799999999999999999998764 35678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCcCC-H-------HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC---hhhHHHH
Q 007134 319 GLAVNGFGKEALELFKEMEIGGFVPG-E-------VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK---IEHFGCM 387 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 387 (616)
.|...|++++|++.|++..+. .|+ . ..|..+...+...|++++|...|+.+.+ +.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999874 344 3 3477777888899999999999999974 4455 5677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 388 VDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
...|...|+. .++++. ...+...+..+. ....+.+++|...++++++++|+++.....+..+
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766543 233321 122344444433 3455678999999999999999987666555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=2.8e-09 Score=104.54 Aligned_cols=163 Identities=8% Similarity=-0.047 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcC-CHHHHHHHHHHHhcC-CChHHHHHHHHHhHHhhCCCCC----
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVP-GEVTFVGVLYACSHC-GMVDEGFSYFKRMKDEYGIMPK---- 380 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~---- 380 (616)
.+|+.+...|...|++++|+..|++..+. |-.+ -..++..+...+... |++++|...|++..+.+.-..+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 35566666666666666666666665442 1111 124566777777775 8888888888887653211111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc---H-----HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch-
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN---A-----VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY- 450 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd---~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~- 450 (616)
..++..+...|.+.|++++|+..|++.. ..|+ . ..|..+..++...|++++|...+++.++++|+.....
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 3467788888999999999999987762 2222 1 2567777888899999999999999999998865432
Q ss_pred ----hhhhHHhH--hcccchHHHHHHHHH
Q 007134 451 ----VLLSNLYA--YEQRWLNVQEVRRTM 473 (616)
Q Consensus 451 ----~~l~~~y~--~~g~~~~a~~~~~~m 473 (616)
..++..|. ..+++++|.+.++.+
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 23455553 456788888777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-09 Score=115.49 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHH
Q 007134 244 GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGL 320 (616)
Q Consensus 244 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 320 (616)
..+++.+..++.+.|++++|.+.|+++++.. +.+...++.|..+|.+.|++++|.+.|++..+ .+..+|+.+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3466666667777777777777777766653 34456666677777777777777777766542 3456677777777
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 398 (616)
.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|+..|++..+. .|+ ...|..+...|...|+++
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhcccHH
Confidence 7777777777777776653 333 456666666777777777777777766542 243 566666777777777777
Q ss_pred HHHHHHHh
Q 007134 399 QAYEYIQN 406 (616)
Q Consensus 399 ~A~~~~~~ 406 (616)
+|.+.+++
T Consensus 163 ~A~~~~~k 170 (723)
T 4gyw_A 163 DYDERMKK 170 (723)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 77666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.4e-09 Score=101.72 Aligned_cols=221 Identities=15% Similarity=0.098 Sum_probs=154.6
Q ss_pred HhcCchHHHHHHHHHHHHh-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhhHHHH
Q 007134 255 AELGALALGRRAHTYVWKV-------GLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-------R----NAVSWSTL 316 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~l 316 (616)
...|+++.|...+++..+. ..+....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777652 2233567788899999999999999999987652 1 34578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC------CCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh-----CCCC-Chhh
Q 007134 317 VVGLAVNGFGKEALELFKEMEIG------GFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY-----GIMP-KIEH 383 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~ 383 (616)
...|...|++++|++.|++.... ...| ...++..+...+...|++++|..+|+++.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 1123 34677788889999999999999999987631 1122 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCc-HHHHHHHHHHHHHcCCcHHHH------HHHHHHHhcCCCC
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML----------MPPN-AVIWRTLLGACTIHGHSAIAE------IARSTLLQLEPKH 446 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~----------~~pd-~~~~~~ll~a~~~~g~~~~a~------~~~~~~~~~~p~~ 446 (616)
+..+...|.+.|++++|.+.+++.. ..+. ...|..+.......+....+. ..++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999997651 2232 234444444444333332222 2222222223444
Q ss_pred CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 447 SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 447 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+..+..++.+|...|++++|.+.+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677899999999999999999998765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-08 Score=98.94 Aligned_cols=242 Identities=13% Similarity=-0.039 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc--C-CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 007134 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAF--G-HVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMAS 237 (616)
Q Consensus 161 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (616)
+|.++..+..+.- ++....+ . |.+. + ++++|...|++. ...|...|++++|+..|.+...
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4666777776652 3221122 1 2233 2 488888777664 6678888888888888887754
Q ss_pred C----CCCCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhh
Q 007134 238 E----GVEPD-GYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVS 312 (616)
Q Consensus 238 ~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~ 312 (616)
. |-+++ ..+|..+..++...|++++|...+...++. +.+.|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHH-----------HHH
Confidence 2 21111 345566666666666666666666555432 1112222211 234
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhCCC----cCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCCh-----
Q 007134 313 WSTLVVGLAVN-GFGKEALELFKEMEIGGF----VPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKI----- 381 (616)
Q Consensus 313 ~~~li~~~~~~-g~~~~A~~l~~~m~~~g~----~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----- 381 (616)
|+.+...|... |++++|+..|++..+... .+. ..++..+...+...|++++|...|+...+...-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 56667777775 777777777777655210 001 2456777778888888888888888877632111221
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcH------HHHHHHHHHHH--HcCCcHHHHHHHHHHHhcCCC
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNA------VIWRTLLGACT--IHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~------~~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~p~ 445 (616)
..|..+..++...|++++|...+++. .+.|+. ..+..++.++. ..+++++|+..++++..++|.
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 14667777788888888888888776 344432 13444555554 345677888888777777765
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.3e-08 Score=94.12 Aligned_cols=204 Identities=10% Similarity=-0.032 Sum_probs=128.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-cCC-HHHHH
Q 007134 278 NVNVNNALLDFYSKCGIIIAAQRVFREMRKR---N---AVSWSTLVVGLAVNGFGKEALELFKEMEIGGF-VPG-EVTFV 349 (616)
Q Consensus 278 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 349 (616)
+...+-.+...+.+.|++++|...|+.+.+. + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455555666666777777777777766532 2 34566666667777777777777777665321 111 23344
Q ss_pred HHHHHHhc--------CCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHH
Q 007134 350 GVLYACSH--------CGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLL 420 (616)
Q Consensus 350 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll 420 (616)
.+..++.. .|++++|...|+.+.+.+ |+ ......+.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 45555555 666777777766666532 22 12221111110000000 11246677
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCC---CchhhhhHHhHhc----------ccchHHHHHHHHHhhCCCccCCceeeE
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHS---GDYVLLSNLYAYE----------QRWLNVQEVRRTMVKERVKKTPGHSLV 487 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~ 487 (616)
..+...|++++|+..++++++..|+++ ..+..++.+|... |++++|...++++.+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---------- 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----------
Confidence 889999999999999999999999854 3677889999876 89999999999886532
Q ss_pred EeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 007134 488 ELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKL 522 (616)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 522 (616)
..+|...++...+.++...+.+
T Consensus 226 -------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 -------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCChHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-08 Score=96.34 Aligned_cols=197 Identities=10% Similarity=-0.008 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C---
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKV------GL-SDNVNVNNALLDFYSKCGIIIAAQRVFREMRK-------R--- 308 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-------~--- 308 (616)
++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|++... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444555555555555444432 11 12234455555556666666666655554431 1
Q ss_pred -ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhh-----
Q 007134 309 -NAVSWSTLVVGLAVNGFGKEALELFKEMEIG------GFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEY----- 375 (616)
Q Consensus 309 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----- 375 (616)
...+|..+...|...|++++|++.|++..+. +..|+ ..++..+...+...|++++|..+|+.+.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 2345666666677777777777777766543 11222 3456667777777788888888777776521
Q ss_pred -CCCCC-hhhHHHHHHHHHhc------CCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 376 -GIMPK-IEHFGCMVDLLGRA------GLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 376 -~~~p~-~~~~~~li~~~~~~------g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
...+. ...|..+...+... ..+.++...++..+ ..| ...++..+...+...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 23333333333332 23445555555554 234 3467888999999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.3e-07 Score=91.33 Aligned_cols=238 Identities=10% Similarity=0.015 Sum_probs=159.9
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 007134 188 YAAFGHVKDACKVFELMSERDL-VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRA 266 (616)
Q Consensus 188 y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 266 (616)
..-.|.+..+..-...+...+. ..---+.++|...|++.... .-.|....+..+ ..|...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~l-a~~~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLY-VQFLDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHH-HHHHTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHH-HHHhccc----HHHH
Confidence 4456888887776665543222 22233457788888776421 123333333222 2233322 5566
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007134 267 HTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGF 341 (616)
Q Consensus 267 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 341 (616)
++..++.+ .++......+..+|...|++++|++++.+.... +...+-.++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66665554 344555567888889999999999999887432 455677788899999999999999999987 4
Q ss_pred cC-----CHHHHHHHHHHHh--c--CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-C--
Q 007134 342 VP-----GEVTFVGVLYACS--H--CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-M-- 409 (616)
Q Consensus 342 ~p-----~~~t~~~ll~a~~--~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-- 409 (616)
.| +..+...+..++. . .++..+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+. .
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56 3566666666632 2 34899999999998754 3553344445558889999999999987652 1
Q ss_pred --------CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 410 --------PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 410 --------~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
.| |+.+...++......|+ .|.++++++.+..|+++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 25 56777677766677786 88999999999999866
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.1e-08 Score=81.67 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHH
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 391 (616)
+|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+|+.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45555666666666666666666665532 123444555555556666666666666665542 122344455555555
Q ss_pred HhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 392 GRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+.|++++|.+.++++. ..| +..++..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 55555555555555441 122 3445555555555555555555555555555543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.9e-08 Score=92.64 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=144.1
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----Chhh
Q 007134 242 PDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDN---VNVNNALLDFYSKCGIIIAAQRVFREMRK--R----NAVS 312 (616)
Q Consensus 242 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~----~~~~ 312 (616)
.+...+......+...|++++|...+..+++.. +.+ ...+..+..+|.+.|++++|...|+...+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677778888899999999999999998864 223 67788899999999999999999998864 2 1346
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhH
Q 007134 313 WSTLVVGLAV--------NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHF 384 (616)
Q Consensus 313 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 384 (616)
+..+..++.. .|++++|+..|++..+. .|+.... ..+...+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 99999999999999874 3443111 1111111111110 01235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHc----------CCcHHHHHHHHHHHhcCCCCCCc
Q 007134 385 GCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIH----------GHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..+...|.+.|++++|+..|++.. ..|+ ...+..+..++... |++++|...++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 567788889999999999988762 2232 45677777778766 88899999999999999987533
Q ss_pred ---hhhhhHHhHhcccchH
Q 007134 450 ---YVLLSNLYAYEQRWLN 465 (616)
Q Consensus 450 ---~~~l~~~y~~~g~~~~ 465 (616)
...+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3344555545444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-08 Score=83.18 Aligned_cols=128 Identities=20% Similarity=0.236 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+...|++++|..+|+.+.+. .+.+...+..+...+...|++++|...++++. ..| +...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4566777888999999999999999863 23457788889999999999999999998873 333 6778899999999
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|...++++++..|.++..+..++.+|...|++++|.+.++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999998888899999999999999999999988754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.8e-09 Score=92.18 Aligned_cols=139 Identities=9% Similarity=-0.078 Sum_probs=95.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHH
Q 007134 320 LAVNGFGKEALELFKEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVK 398 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 398 (616)
+...|++++|++.+++.... .|+ ...+..+...|.+.|++++|...|++..+. -+-+...|..+...|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 34455666666666665442 232 233445556666777777777777766642 1223667777777788888888
Q ss_pred HHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHH-HHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 399 QAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIA-RSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 399 ~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
+|+..|++. ...| +..+|..+...+...|+.++|... ++++++++|+++..|.....++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888887765 3556 567888888889999988776654 588999999988888888888877764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-07 Score=90.41 Aligned_cols=238 Identities=12% Similarity=-0.002 Sum_probs=164.3
Q ss_pred HHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007134 217 NGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIII 296 (616)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 296 (616)
+-..-.|++..++.-..++.. ..+.....-+.+++..+|+.+.+ ..-.|.......+.. |.+.+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 344456888888774333221 22223444556788878876642 112233333333333 33332
Q ss_pred HHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 297 AAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 297 ~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
|...|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7778887653 455666778889999999999999999987765322 44667788889999999999999999997
Q ss_pred HhhCCCC-----ChhhHHHHHHH--HHh--cCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhc
Q 007134 373 DEYGIMP-----KIEHFGCMVDL--LGR--AGLVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQL 442 (616)
Q Consensus 373 ~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 442 (616)
+. .| +..+...|..+ ... .++..+|..+|+++. ..|+..+-..|++++.+.|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 45 24555555555 333 349999999999984 3456344445555889999999999999988776
Q ss_pred ----------CCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 443 ----------EPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 443 ----------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+|+++.+...++.++...|+ +|.++++++.+.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47788888777777777786 899999999763
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=112.96 Aligned_cols=168 Identities=11% Similarity=-0.060 Sum_probs=121.2
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhc
Q 007134 290 SKCGIIIAAQRVFREMR-----------KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSH 357 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 357 (616)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56777888888887765 235567777777888888888888888887763 33 44566677777778
Q ss_pred CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIA 435 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~ 435 (616)
.|++++|...|++..+. -+.+...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887652 22246677778888888888888 7777765 2445 567778888888888888888888
Q ss_pred HHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 436 RSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888877777777777766444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-07 Score=88.05 Aligned_cols=180 Identities=14% Similarity=0.008 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH----HHH
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRK--RN----AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE----VTF 348 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~ 348 (616)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|++..+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 33445566677788888888888887753 22 2356677778888888888888888887642 332 123
Q ss_pred HHHHHHHhc------------------CCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 007134 349 VGVLYACSH------------------CGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNMLM 409 (616)
Q Consensus 349 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 409 (616)
..+..++.. .|+.++|...|+.+.+.+ |+ ...+.+.... +.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHH----HHHHHHH--------
Confidence 333333332 355666666666665422 32 2222111110 0000000
Q ss_pred CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC---CchhhhhHHhHhcccchHHHHHHHHHhhCCC
Q 007134 410 PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS---GDYVLLSNLYAYEQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 410 ~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 478 (616)
......+...+...|++++|+..++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01113456678899999999999999999999865 4578899999999999999999998887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-07 Score=92.95 Aligned_cols=174 Identities=10% Similarity=-0.058 Sum_probs=126.9
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 296 IAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 296 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
+...+.+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444555555445556667777778888888888888887764 34 3456677777888888888888888877643
Q ss_pred hCCCCChhhHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CCc
Q 007134 375 YGIMPKIEHFGCM-VDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH--SGD 449 (616)
Q Consensus 375 ~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 449 (616)
.|+....... ...+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3553332222 23356677777787777665 2445 67888899999999999999999999999999987 667
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHh
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 8899999999999999988877643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.7e-07 Score=84.51 Aligned_cols=171 Identities=8% Similarity=-0.107 Sum_probs=122.2
Q ss_pred HHHHHHhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC----ChHHHHHHHHHhH
Q 007134 298 AQRVFREMR-KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG----MVDEGFSYFKRMK 372 (616)
Q Consensus 298 A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 372 (616)
|.+.|++.. ..++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + +.++|..+|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 2355666666677777777777777777777654 44555556666666 5 7888888888776
Q ss_pred HhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCc---HHHHHHHHHHHHH----cCCcHHHHHHHHHHH
Q 007134 373 DEYGIMPKIEHFGCMVDLLGR----AGLVKQAYEYIQNML-MPPN---AVIWRTLLGACTI----HGHSAIAEIARSTLL 440 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~-~~pd---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~ 440 (616)
+. -+...+..|...|.. .+++++|++.|++.. ..|. ...+..|...|.. .++.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 346667777777776 778888888887774 3332 6778888888877 778999999999998
Q ss_pred hcCCCCCCchhhhhHHhHhc-c-----cchHHHHHHHHHhhCC
Q 007134 441 QLEPKHSGDYVLLSNLYAYE-Q-----RWLNVQEVRRTMVKER 477 (616)
Q Consensus 441 ~~~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 477 (616)
+. |.++.++..|+.+|... | ++++|.+.+++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 87 55577888899888754 3 8899999998887765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4e-07 Score=98.12 Aligned_cols=160 Identities=11% Similarity=-0.071 Sum_probs=118.2
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHH
Q 007134 292 CGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYF 368 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 368 (616)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3667778887777653 256678888888888899999999998888743 224567778888888999999999999
Q ss_pred HHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHc---CCcHHHHHHHHHHHhcC
Q 007134 369 KRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIH---GHSAIAEIARSTLLQLE 443 (616)
Q Consensus 369 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~ 443 (616)
++..+. -+.+...+..+...|.+.|++++|.+.+++.- ..| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 988763 23347788889999999999999999998762 445 577888999999999 99999999999999999
Q ss_pred CCCCCchhhhh
Q 007134 444 PKHSGDYVLLS 454 (616)
Q Consensus 444 p~~~~~~~~l~ 454 (616)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99887777666
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=88.11 Aligned_cols=122 Identities=11% Similarity=-0.051 Sum_probs=101.7
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcC
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHG 427 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g 427 (616)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33456677889999999888753 3343 556778899999999999999999887 3566 6789999999999999
Q ss_pred CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHH-HHHHhh
Q 007134 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEV-RRTMVK 475 (616)
Q Consensus 428 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 475 (616)
++++|+..++++++++|+++..+..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 476654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-05 Score=82.17 Aligned_cols=335 Identities=10% Similarity=0.000 Sum_probs=169.3
Q ss_pred CHHHHHHHHhhCC--CCChhHHHHHHHHHHhcCC-chHHHHHHHHHHHC-CCCC-CcchHHHHHHHHHc----CCCcHHH
Q 007134 92 PMSYAHNIFSHVQ--DPNIFTWNTMIRGYAESAN-PLLAVELYSKMHVS-GIKP-DTHTYPFLLKAISK----LADVRMG 162 (616)
Q Consensus 92 ~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p-d~~t~~~ll~~~~~----~~~~~~a 162 (616)
+.+.++.+|++-. .|++..|..-+....+.+. .+....+|+..+.. |..| +...|...+..+.. .++.+.+
T Consensus 29 ~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~v 108 (493)
T 2uy1_A 29 DYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI 108 (493)
T ss_dssp CHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHH
Confidence 5666666666433 2566666666666555542 23455566655543 3222 22333333333221 2345566
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHH-------------hcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCC-
Q 007134 163 EQTHSVAIRNGFESLVFVQNSLVHMYA-------------AFGHVKDACKVFELMSE----RDLVAWNSVINGFASNGK- 224 (616)
Q Consensus 163 ~~~~~~~~~~g~~~~~~~~~~Li~~y~-------------~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~- 224 (616)
..+|+.+++.....-..+|......-. ..+.+..|..+++.+.. .+...|...+.--..++.
T Consensus 109 R~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~ 188 (493)
T 2uy1_A 109 RNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMK 188 (493)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCcc
Confidence 666666665321111112221111000 01123333433333221 233456555443222211
Q ss_pred ------ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 007134 225 ------PNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAA 298 (616)
Q Consensus 225 ------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 298 (616)
.+.+..+|++++... +.+...|...+.-+.+.|+.+.|..+++..++. +.+...+.. |+...+.++.
T Consensus 189 ~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~ 261 (493)
T 2uy1_A 189 LGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV 261 (493)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH
T ss_pred CcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH
Confidence 234567787777642 445566666666677788888888888888877 444333332 2222111111
Q ss_pred -HHHHHhcC--C-------C---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHH--HHHHHHhcCCChHH
Q 007134 299 -QRVFREMR--K-------R---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFV--GVLYACSHCGMVDE 363 (616)
Q Consensus 299 -~~~f~~m~--~-------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~ 363 (616)
..+.+... . + ....|...+....+.+..+.|..+|.+. ... ..+...|. +.+... ..++.+.
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ 338 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRAT 338 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHH
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHH
Confidence 11111110 0 0 1234555555555666777777787777 211 12233332 222221 1235777
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
|..+|+...+.++ -+...|...++...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++.+
T Consensus 339 ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 339 PYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888877776432 223445666777777777777777777763 245667777766667777777777666664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.67 E-value=6e-07 Score=88.44 Aligned_cols=219 Identities=12% Similarity=-0.013 Sum_probs=147.6
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (616)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467788888888776431 110 0 01135666666655543 4567777888888877
Q ss_pred HHhcCCC-----C----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcC-CHHHHHHHHHHHhcCCChHHHHHH
Q 007134 302 FREMRKR-----N----AVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVP-GEVTFVGVLYACSHCGMVDEGFSY 367 (616)
Q Consensus 302 f~~m~~~-----~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 367 (616)
|.+...- + ..+|+.+...|...|++++|+..|++..+. |-.+ -..++..+...+.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7765421 1 346788888899999999999998876542 2111 13567778888888 999999999
Q ss_pred HHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCc----HHHHHHHHHHHHHcCCcHHHHHH
Q 007134 368 FKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNML-M---PPN----AVIWRTLLGACTIHGHSAIAEIA 435 (616)
Q Consensus 368 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~pd----~~~~~~ll~a~~~~g~~~~a~~~ 435 (616)
|++..+.+.-..+ ...+..+...|.+.|++++|++.|++.. + .++ ...+..++..+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988763211111 4578888999999999999999998762 1 111 23666777778888999999999
Q ss_pred HHHHHhcCCCCCCch-----hhhhHHhHhcccchHHHH
Q 007134 436 RSTLLQLEPKHSGDY-----VLLSNLYAYEQRWLNVQE 468 (616)
Q Consensus 436 ~~~~~~~~p~~~~~~-----~~l~~~y~~~g~~~~a~~ 468 (616)
+++++ +.|...... ..++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 999765442 2344444 4566555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=5.7e-08 Score=84.48 Aligned_cols=101 Identities=10% Similarity=-0.009 Sum_probs=88.1
Q ss_pred CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhh
Q 007134 376 GIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 376 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
.+.|+ ...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34454 5667788888999999999999998873 556 67899999999999999999999999999999999999999
Q ss_pred hhHHhHhcccchHHHHHHHHHhhC
Q 007134 453 LSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 453 l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++.+|.+.|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-07 Score=99.92 Aligned_cols=188 Identities=12% Similarity=-0.008 Sum_probs=140.5
Q ss_pred HhcCchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHc
Q 007134 255 AELGALALGRRAHTYVW--------KVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVN 323 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 323 (616)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888887 32 245667788888889999999999999988763 4677888889999999
Q ss_pred CCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 007134 324 GFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYE 402 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 402 (616)
|++++|++.|++..+. .| +...+..+..++.+.|++++ ...|+++.+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998874 34 44677788888999999999 9999988763 22347788899999999999999999
Q ss_pred HHHhCC-CCCc-HHHHHHHHHHHHHcCC-----cHHHHHHHHHHHhcCCCCCC
Q 007134 403 YIQNML-MPPN-AVIWRTLLGACTIHGH-----SAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 403 ~~~~m~-~~pd-~~~~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 448 (616)
.|++.. ..|+ ...|..+..++...++ .+...++.+.+.++.+..+.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 999884 6775 5677777777766555 23344444444445554443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=102.51 Aligned_cols=151 Identities=17% Similarity=-0.025 Sum_probs=116.3
Q ss_pred cCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHH
Q 007134 323 NGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAY 401 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 401 (616)
.|++++|++.|++..+. .| +...+..+...+...|++++|...|++..+ --+.+...|..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999999998774 34 467788888999999999999999999975 22334788999999999999999999
Q ss_pred HHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhc---ccchHHHHHHHHHhhC
Q 007134 402 EYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE---QRWLNVQEVRRTMVKE 476 (616)
Q Consensus 402 ~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~~~ 476 (616)
+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999887 3445 6789999999999999999999999999999999999999999999999 9999999999887654
Q ss_pred C
Q 007134 477 R 477 (616)
Q Consensus 477 ~ 477 (616)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-07 Score=82.37 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=55.2
Q ss_pred HHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC--CCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 400 AYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH--SGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 400 A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
|...+++. ...| +...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44444443 2345 56777888888888888888888888888888864 3467788888888888888888877654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-07 Score=84.00 Aligned_cols=126 Identities=9% Similarity=-0.024 Sum_probs=90.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR 393 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 393 (616)
.+...|.+.|++++|+..|++..+. .| +...+..+...+...|++++|...|+++.+. -+.+...|..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3777888888888888888888774 34 4567777888888889999999888888763 22347778888877766
Q ss_pred cCC--HHHHHHHHHhCCCCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 394 AGL--VKQAYEYIQNMLMPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 394 ~g~--~~~A~~~~~~m~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.|. .+.+...++... .|+ ...+..+..++...|++++|+..+++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 554 344555565543 333 344555566677788999999999999999887
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-06 Score=81.52 Aligned_cols=149 Identities=13% Similarity=0.176 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChH--HHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC-----
Q 007134 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD--EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL----- 396 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----- 396 (616)
+++++++++++++.+.. +-|...|..-...+.+.|.++ ++++.++.+.+. -+.|...|+.-...+.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 45555556555555432 123344444444444455554 555555555542 12334445444444444444
Q ss_pred -HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHH-HHHHHHHHHhcC---CCCCCchhhhhHHhHhcccchHHHHH
Q 007134 397 -VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAI-AEIARSTLLQLE---PKHSGDYVLLSNLYAYEQRWLNVQEV 469 (616)
Q Consensus 397 -~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~~~ 469 (616)
++++++.++++ ...| |...|+.+...+...|+... .....+++++++ |.++.+...++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 66666666554 2344 56677776666666666333 444555555554 55555666777777777777777777
Q ss_pred HHHHhh
Q 007134 470 RRTMVK 475 (616)
Q Consensus 470 ~~~m~~ 475 (616)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.2e-07 Score=79.80 Aligned_cols=154 Identities=14% Similarity=0.035 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSA-CAE 256 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 256 (616)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34556667778888888888887764 356677778888888888888888887776542 333222211111 112
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----hhhHHHHHHHHHHcCCHHHHHH
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRN-----AVSWSTLVVGLAVNGFGKEALE 331 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~ 331 (616)
.+....+...++..++.. +.+...+..+...|.+.|++++|...|+++.+.+ ...|..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222233555666665543 3345666666666677777777777666654322 3356666666666666666666
Q ss_pred HHHHHH
Q 007134 332 LFKEME 337 (616)
Q Consensus 332 l~~~m~ 337 (616)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.3e-07 Score=78.02 Aligned_cols=109 Identities=8% Similarity=-0.072 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 423 (616)
..+......+.+.|++++|...|++..+. -+.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34455556666667777777777666542 2234666666777777777777777777655 2344 456777777777
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
...|++++|+..++++++++|+++..+..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777766655555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-06 Score=80.08 Aligned_cols=128 Identities=12% Similarity=-0.067 Sum_probs=55.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCC
Q 007134 285 LLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGM 360 (616)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 360 (616)
+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+. .| +..++..+..++...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhH
Confidence 4445555555555555555443 124445555555555555555555555555542 22 23344444444433322
Q ss_pred --hHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCcHHHHH
Q 007134 361 --VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPNAVIWR 417 (616)
Q Consensus 361 --~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~ 417 (616)
.+.+...++.... ..|....+..+..++...|++++|...|++. ...|+.....
T Consensus 138 ~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~ 194 (208)
T 3urz_A 138 QEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHH
Confidence 2223333333221 1111112222333444455566666666544 3455544333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-06 Score=83.81 Aligned_cols=158 Identities=9% Similarity=0.003 Sum_probs=86.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHH-HHHHHHH
Q 007134 144 HTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE--RDLVAWN-SVINGFA 220 (616)
Q Consensus 144 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~-~li~~~~ 220 (616)
..+..+...+...|+++.|.+.++.+++.. +.+...+..|...|.+.|++++|...|++... |+..... .....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344555556666677777777777766654 44556666667777777777777777776654 3322221 1222344
Q ss_pred hCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHH
Q 007134 221 SNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLS-DNVNVNNALLDFYSKCGIIIAAQ 299 (616)
Q Consensus 221 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~ 299 (616)
+.++.++|+..|++..... +.+...+..+..++...|++++|...+..+++.... .+...+..++..|...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 5556666666666665542 234445555555555556666666655555554311 11344455555555555555554
Q ss_pred HHHH
Q 007134 300 RVFR 303 (616)
Q Consensus 300 ~~f~ 303 (616)
..|+
T Consensus 276 ~~~r 279 (287)
T 3qou_A 276 SXYR 279 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-07 Score=79.71 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=89.5
Q ss_pred CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhh
Q 007134 377 IMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453 (616)
Q Consensus 377 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 453 (616)
+.|+ ...+......|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4455 566778889999999999999999886 3555 688999999999999999999999999999999999999999
Q ss_pred hHHhHhcccchHHHHHHHHHhh
Q 007134 454 SNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 454 ~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998876
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.8e-08 Score=83.14 Aligned_cols=95 Identities=8% Similarity=-0.044 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5567777888888999999999888763 445 67888888899999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHhh
Q 007134 459 YEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~ 475 (616)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.58 E-value=9.2e-07 Score=87.08 Aligned_cols=91 Identities=8% Similarity=-0.095 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C----hh
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKV----GLS-DNVNVNNALLDFYSKCGIIIAAQRVFREMRKR-----N----AV 311 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~----~~ 311 (616)
+|..+...+...|++++|...+.+.++. |-. ....+++.+...|.+ |++++|...|++...- + ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3444444445555555555555444332 100 012334444555555 5555555555443210 0 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
+++.+...|.+.|++++|+..|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-06 Score=82.15 Aligned_cols=160 Identities=8% Similarity=-0.058 Sum_probs=116.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC-CcCCHH----HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHH
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGG-FVPGEV----TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGC 386 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 386 (616)
.+..+...|++++|.+++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566778888888888888877632 223321 2334666677778899999999888763222223 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC--------CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchh
Q 007134 387 MVDLLGRAGLVKQAYEYIQNML--------MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYV 451 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~--------~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 451 (616)
+...|...|++++|+..|++.- ..+. ..++..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999988887652 1122 2478889999999999999999999998765443 34577
Q ss_pred hhhHHhHhccc-chHHHHHHHHHhh
Q 007134 452 LLSNLYAYEQR-WLNVQEVRRTMVK 475 (616)
Q Consensus 452 ~l~~~y~~~g~-~~~a~~~~~~m~~ 475 (616)
.++.+|.+.|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999995 5999998887653
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-06 Score=79.74 Aligned_cols=186 Identities=11% Similarity=-0.033 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-hh---hHH
Q 007134 243 DGYTMVSLFSACAELGALALGRRAHTYVWKVGLS-D-NVNVNNALLDFYSKCGIIIAAQRVFREMRK--RN-AV---SWS 314 (616)
Q Consensus 243 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~-~~---~~~ 314 (616)
+...+......+...|++++|...++.+++.... + ....+..+..+|.+.|++++|...|+++.+ |+ .. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677889999999999999999986422 1 245777889999999999999999999763 32 22 455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhCCCcCCHH-HHHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 315 TLVVGLAV------------------NGFGKEALELFKEMEIGGFVPGEV-TFVGVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 315 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
.+..++.. .|+.++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999884 45542 1111110 001111111
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 376 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.....+...|.+.|++++|...|+++. ..|+ ...+..+..++...|+.++|...++++....|++...
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 122356778899999999999998873 3343 2578889999999999999999999999988886543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=9e-07 Score=81.63 Aligned_cols=123 Identities=9% Similarity=-0.070 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHc
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIH 426 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~ 426 (616)
..+...+...|++++|...|+... .|+...|..+...|.+.|++++|++.+++.. ..| +...|..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334445556677777777776553 3566677777777777777777777776652 334 567788888888888
Q ss_pred CCcHHHHHHHHHHHhcCCCCC----------------CchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 427 GHSAIAEIARSTLLQLEPKHS----------------GDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
|++++|...++++++..|.+. ..+..++.+|.+.|++++|.+.+++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888888888766 67788999999999999999999888764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.1e-05 Score=76.65 Aligned_cols=224 Identities=11% Similarity=0.013 Sum_probs=159.0
Q ss_pred CccHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC--chHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---C
Q 007134 224 KPNEALTLFREMASEGVEPDG-YTMVSLFSACAELG--ALALGRRAHTYVWKVGLSDNVNVNNALLDFY----SKC---G 293 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~---g 293 (616)
..++|++++.+++.. .|+. ..++.--.++...+ +++++...++.++... +-+..+|+.-...+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 345777777777764 3433 34455555556666 7777777777777664 33445555443333 444 7
Q ss_pred CHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC------hH
Q 007134 294 IIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGK--EALELFKEMEIGGFVPGEVTFVGVLYACSHCGM------VD 362 (616)
Q Consensus 294 ~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 362 (616)
++++++++++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.......+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHH
Confidence 7888888888876 357778888877888888888 99999999988653 356677666666666666 88
Q ss_pred HHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHhCC-C----CCcHHHHHHHHHHHHHcCCcHHHHHHH
Q 007134 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ-AYEYIQNML-M----PPNAVIWRTLLGACTIHGHSAIAEIAR 436 (616)
Q Consensus 363 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~-~----~pd~~~~~~ll~a~~~~g~~~~a~~~~ 436 (616)
++++.++.+.. --+-|...|+-+-..+.+.|+..+ +.++.++.- . ..+...+..+...+.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 89999888876 334568889888888888888555 455666652 1 236788999999999999999999999
Q ss_pred HHHHh-cCCCCCCchhhh
Q 007134 437 STLLQ-LEPKHSGDYVLL 453 (616)
Q Consensus 437 ~~~~~-~~p~~~~~~~~l 453 (616)
+.+.+ .+|.....+...
T Consensus 282 ~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHTTCGGGHHHHHHH
T ss_pred HHHHhccChHHHHHHHHH
Confidence 99986 798765555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.2e-06 Score=78.12 Aligned_cols=172 Identities=13% Similarity=0.005 Sum_probs=118.1
Q ss_pred HHHHHHhhCC-CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCC----CcHHHHHHHHHH
Q 007134 95 YAHNIFSHVQ-DPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLA----DVRMGEQTHSVA 169 (616)
Q Consensus 95 ~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~----~~~~a~~~~~~~ 169 (616)
+|.+.|+... ..++.++..|...|...+++++|++.|++..+.| +...+..+-..+.. + +.++|.+.++..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3445554333 2467777777777777788888888888877654 44555556666655 5 788888888888
Q ss_pred HHhCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhhcCCCC-----hhHHHHHHHHHHh----CCCccHHHHHHHHHH
Q 007134 170 IRNGFESLVFVQNSLVHMYAA----FGHVKDACKVFELMSERD-----LVAWNSVINGFAS----NGKPNEALTLFREMA 236 (616)
Q Consensus 170 ~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 236 (616)
.+.| +...+..|..+|.. .+++++|.+.|++..+.+ ..+++.|...|.. .+++++|+..|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7755 45666777777776 778888888888876643 4677778888877 777888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhc-C-----chHHHHHHHHHHHHhCC
Q 007134 237 SEGVEPDGYTMVSLFSACAEL-G-----ALALGRRAHTYVWKVGL 275 (616)
Q Consensus 237 ~~g~~p~~~t~~~ll~a~~~~-~-----~~~~a~~~~~~~~~~g~ 275 (616)
+. ..+...+..+...|... | +.++|...+....+.|.
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 65 22334555555555432 2 67888888887777763
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-06 Score=84.27 Aligned_cols=163 Identities=7% Similarity=-0.088 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC-H----HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCC--CCC--hh
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG-E----VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGI--MPK--IE 382 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~~ 382 (616)
.+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...++...+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677788888888888877765422111 1 12333445567778888888888877642111 111 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC----CCCc-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------C
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNML----MPPN-----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------S 447 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~ 447 (616)
.|+.+...|...|++++|...+++.. ..|+ ..++..+...|...|++++|...+++++++.++. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 77888888889999998888887652 1122 2588888899999999999999999987654321 3
Q ss_pred CchhhhhHHhHhcccchHH-HHHHHHHh
Q 007134 448 GDYVLLSNLYAYEQRWLNV-QEVRRTMV 474 (616)
Q Consensus 448 ~~~~~l~~~y~~~g~~~~a-~~~~~~m~ 474 (616)
..|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4567889999999999999 77677654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-06 Score=76.67 Aligned_cols=144 Identities=8% Similarity=-0.108 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChH
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVD 362 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 362 (616)
..+...|...|++++|.+.|++...++...|..+...|...|++++|++.|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566677777777777777766666677777777777777777777777766532 223455666666666666676
Q ss_pred HHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 363 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
+|...|+...+...-.+... +...| +...| +...|..+..++...|++++|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666654211111000 00000 01233 236777788888888888888888888888
Q ss_pred cCCCC
Q 007134 442 LEPKH 446 (616)
Q Consensus 442 ~~p~~ 446 (616)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 88874
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=75.91 Aligned_cols=127 Identities=6% Similarity=-0.034 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555566677777777777766552 22346667777777778888888887776652 334 5678888888899
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhh--hHHhHhcccchHHHHHHHHHhh
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLL--SNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..|++++|...+++++++.|.+...+..+ +..+.+.|++++|.+.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999877766444 4447788999999998876643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=5.1e-07 Score=87.66 Aligned_cols=191 Identities=9% Similarity=-0.105 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHh
Q 007134 280 NVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACS 356 (616)
Q Consensus 280 ~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 356 (616)
..+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344445555555666666666665543 2245556666666666666666666666665532 123345555566666
Q ss_pred cCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHH
Q 007134 357 HCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIAR 436 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~ 436 (616)
..|++++|...|+...+...-.+ ..+...+....+..+...... .......++..+...+.. + ..|+.++|.+.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQR--LNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTT--CCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHH
Confidence 66666666666666544211001 011111111111111111111 222223334444333322 2 268888999999
Q ss_pred HHHHhcCCCCCCchhhhhHHhHhc-ccchHHHHHHHHHhhC
Q 007134 437 STLLQLEPKHSGDYVLLSNLYAYE-QRWLNVQEVRRTMVKE 476 (616)
Q Consensus 437 ~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 476 (616)
+++++++|++......+...+.+. +.+++|.++|....+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988887665556666666665 7788999999887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.8e-06 Score=71.41 Aligned_cols=114 Identities=22% Similarity=0.224 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+...|++++|...|+.+.+. .+.+...+..+...+.+.|++++|...++++. ..| +..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555555666666666666666666542 12345566667777777777777777776652 223 567777888888
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcc
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQ 461 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 461 (616)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888887777777777665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-06 Score=75.50 Aligned_cols=95 Identities=11% Similarity=-0.115 Sum_probs=79.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4455666777888888888888887762 445 67788888889999999999999999999999999988999999999
Q ss_pred hcccchHHHHHHHHHhh
Q 007134 459 YEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~ 475 (616)
..|++++|.+.++...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=72.53 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHH
Q 007134 345 EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGA 422 (616)
Q Consensus 345 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a 422 (616)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666777777777777776652 22346667777777778888888887776652 334 56778888888
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
+...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999988988887888888888877765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-06 Score=72.44 Aligned_cols=115 Identities=7% Similarity=-0.049 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+...|++++|...|+...+ ..+.+...+..+...|...|++++|.+.+++.. ..| +...|..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4455555556666666666666666553 122245566666666667777777776666552 233 567777888888
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
...|++++|...++++++.+|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888877777777777776553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-06 Score=87.97 Aligned_cols=94 Identities=14% Similarity=0.000 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888888899999999999999876 3445 67899999999999999999999999999999999999999999999
Q ss_pred hcccchHH-HHHHHHHh
Q 007134 459 YEQRWLNV-QEVRRTMV 474 (616)
Q Consensus 459 ~~g~~~~a-~~~~~~m~ 474 (616)
+.|++++| .+.++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-05 Score=83.38 Aligned_cols=340 Identities=8% Similarity=-0.057 Sum_probs=186.1
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCC-cHHHHHHHHHHHH
Q 007134 93 MSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD-VRMGEQTHSVAIR 171 (616)
Q Consensus 93 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~ 171 (616)
++.|+.+|+... ..+-. |+++.+..+|++.+.. .|+...|..-++...+.++ .+....+|+.++.
T Consensus 11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~ 76 (493)
T 2uy1_A 11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG 76 (493)
T ss_dssp -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 666777776542 22222 8899999999998874 4787787777776655553 4567788888776
Q ss_pred h-CC-CCcHHHHHHHHHHHH----hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHH
Q 007134 172 N-GF-ESLVFVQNSLVHMYA----AFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGY 245 (616)
Q Consensus 172 ~-g~-~~~~~~~~~Li~~y~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 245 (616)
. |. ..+..+|...+..+. ..|+++.+.++|++...-....+..+-..| ..+... .+..
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y-------------~~fE~~---~~~~ 140 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDF-------------ENFELE---LNKI 140 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHH-------------HHHHHH---HCHH
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHH-------------HHHHHH---hccc
Confidence 4 53 335677777776554 346788899999887541111112222222 111111 0111
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--C-----HHHHHHHHHhcCC---CChhhHHH
Q 007134 246 TMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG--I-----IIAAQRVFREMRK---RNAVSWST 315 (616)
Q Consensus 246 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~-----~~~A~~~f~~m~~---~~~~~~~~ 315 (616)
+...++... .+.+..|+.++..+.+.--..+...|...++.-...+ - .+.+..+|+++.. .+...|..
T Consensus 141 ~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ 218 (493)
T 2uy1_A 141 TGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFF 218 (493)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 112222111 1233334444444332100012334444444322211 0 2345566666543 35667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhC--------CCC---ChhhH
Q 007134 316 LVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYG--------IMP---KIEHF 384 (616)
Q Consensus 316 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p---~~~~~ 384 (616)
.+.-+.+.|+.++|.++|++.... |+...+... +......++ +++.+.+.+- ..+ ....|
T Consensus 219 ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 219 YSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTH---HHHHHHHHTC----------CHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 777777888888888888888876 444322211 111111111 1233322210 001 13456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC-CcHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 385 GCMVDLLGRAGLVKQAYEYIQNMLMP-PNAVIWRTLLGACT-IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m~~~-pd~~~~~~ll~a~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
...+..+.+.|.++.|..+|++.... .+..+|......-. ..++.+.|..+++.+++..|+++..+...++...+.|+
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 77777777788889999888877311 13344433222222 23368899999999888778766555566666677888
Q ss_pred chHHHHHHHHH
Q 007134 463 WLNVQEVRRTM 473 (616)
Q Consensus 463 ~~~a~~~~~~m 473 (616)
.+.|+.+++..
T Consensus 370 ~~~aR~l~er~ 380 (493)
T 2uy1_A 370 EENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHH
Confidence 88888888876
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-05 Score=77.22 Aligned_cols=87 Identities=13% Similarity=-0.001 Sum_probs=43.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCC---Ch------hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 007134 185 VHMYAAFGHVKDACKVFELMSER---DL------VAWNSVINGFASNGKPNEALTLFREMASEGVE-PD----GYTMVSL 250 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~l 250 (616)
+..+.+.|++++|.+.+++..+. +. ..+..+...+...|++++|+..|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566666666666666654331 11 12223444455555666666666666553211 11 1134445
Q ss_pred HHHHHhcCchHHHHHHHHHHH
Q 007134 251 FSACAELGALALGRRAHTYVW 271 (616)
Q Consensus 251 l~a~~~~~~~~~a~~~~~~~~ 271 (616)
...+...|++++|...+..+.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-05 Score=78.89 Aligned_cols=162 Identities=6% Similarity=-0.116 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ch------hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CcCC--HH
Q 007134 281 VNNALLDFYSKCGIIIAAQRVFREMRKR---NA------VSWSTLVVGLAVNGFGKEALELFKEMEIGG---FVPG--EV 346 (616)
Q Consensus 281 ~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~ 346 (616)
.+...+..|...|++++|.+.++...+. +. ..+..+...+...|++++|+..+++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667778888898888888755321 11 223445566777889999999999887532 1222 34
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-------CCC-cH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVKQAYEYIQNML-------MPP-NA 413 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~p-d~ 413 (616)
+++.+...+...|++++|...|++..+.....|+ ..++..+...|.+.|++++|++.+++.- ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999988742222232 2578888999999999999999987651 111 25
Q ss_pred HHHHHHHHHHHHcCCcHHH-HHHHHHHHhc
Q 007134 414 VIWRTLLGACTIHGHSAIA-EIARSTLLQL 442 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a-~~~~~~~~~~ 442 (616)
.+|..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7888899999999999999 7778887643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-06 Score=82.58 Aligned_cols=135 Identities=12% Similarity=-0.065 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC--hhhHHHHHHHH
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK--IEHFGCMVDLL 391 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 391 (616)
-.....+...|++++|.++|..+...+ |+....-.+...+.+.+++++|+..|+..... ..|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 345566777788888888887776543 44434444445677788888888888755431 0111 23566777788
Q ss_pred HhcCCHHHHHHHHHhCC---CCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhh
Q 007134 392 GRAGLVKQAYEYIQNML---MPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m~---~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 453 (616)
.+.|++++|+..|++.. ..|. ...+..+..++...|+.++|...+++++..+|+ +.....|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 88888888888888762 2243 346677777888889999999999999888887 5444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=1e-06 Score=78.71 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=84.8
Q ss_pred hcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHH-HHHcCCc--H
Q 007134 356 SHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGA-CTIHGHS--A 430 (616)
Q Consensus 356 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a-~~~~g~~--~ 430 (616)
...|++++|...++...+. .+.+...|..+...|...|++++|...|++.. ..| +...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456677777777776653 22346677777777888888888888777652 333 56677777777 6778887 8
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+|...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888878888888888888888888888887654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=72.81 Aligned_cols=96 Identities=10% Similarity=-0.038 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...|..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888766 2344 67888888889999999999999999999999998888899999999
Q ss_pred hcccchHHHHHHHHHhhC
Q 007134 459 YEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999887653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-06 Score=75.14 Aligned_cols=102 Identities=11% Similarity=-0.074 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|++.|++.. ..| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555666777888888888888887652 23357777888888888888888888887762 445 567888889999
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
...|++++|...+++++++.|+++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999987654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-06 Score=72.04 Aligned_cols=95 Identities=16% Similarity=0.027 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
..+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345667778889999999999998773 455 678899999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhC
Q 007134 460 EQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 460 ~g~~~~a~~~~~~m~~~ 476 (616)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=1e-05 Score=73.56 Aligned_cols=151 Identities=13% Similarity=-0.022 Sum_probs=77.5
Q ss_pred hcCCHHHHHH---HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCcC-CHHHHHHHHHHHhcCCChH
Q 007134 291 KCGIIIAAQR---VFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI----GGFVP-GEVTFVGVLYACSHCGMVD 362 (616)
Q Consensus 291 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 362 (616)
..|++++|.+ .+..-+.....+++.+...+...|++++|+..+++... .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3556666666 44332222345566666666666777777766666544 11122 1234555555666667777
Q ss_pred HHHHHHHHhHHhhCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHhCC------CCCc--HHHHHHHHHHHHHcCCc
Q 007134 363 EGFSYFKRMKDEYGIMP-K----IEHFGCMVDLLGRAGLVKQAYEYIQNML------MPPN--AVIWRTLLGACTIHGHS 429 (616)
Q Consensus 363 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~pd--~~~~~~ll~a~~~~g~~ 429 (616)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++.. ..+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 76666666544311112 1 2334555556666666666666554431 0111 12344555555666666
Q ss_pred HHHHHHHHHHHh
Q 007134 430 AIAEIARSTLLQ 441 (616)
Q Consensus 430 ~~a~~~~~~~~~ 441 (616)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.3e-06 Score=74.99 Aligned_cols=46 Identities=13% Similarity=-0.065 Sum_probs=21.4
Q ss_pred cCCHHHHHH---HHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 007134 191 FGHVKDACK---VFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 191 ~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (616)
.|++++|.+ .+..-+.....+++.+...|...|++++|+..|++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555555 3333222233445555555555555555555555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.3e-06 Score=67.57 Aligned_cols=97 Identities=10% Similarity=0.045 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC--CCCchhhhhHH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK--HSGDYVLLSNL 456 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 456 (616)
...+..+...+.+.|++++|...+++.. ..| +..+|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5566677777888888888888887662 333 5677888888888888999999999988888888 77788888888
Q ss_pred hHhc-ccchHHHHHHHHHhhCC
Q 007134 457 YAYE-QRWLNVQEVRRTMVKER 477 (616)
Q Consensus 457 y~~~-g~~~~a~~~~~~m~~~~ 477 (616)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 99999998888886543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=7.8e-06 Score=74.48 Aligned_cols=95 Identities=11% Similarity=-0.087 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
..|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|...++++++++|+++..+..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 567778888888999999988887762 344 678888999999999999999999999999999998888999999998
Q ss_pred cccchHHH-HHHHHHhhC
Q 007134 460 EQRWLNVQ-EVRRTMVKE 476 (616)
Q Consensus 460 ~g~~~~a~-~~~~~m~~~ 476 (616)
.|+.+++. ..++.|..+
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888777 555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.1e-06 Score=78.19 Aligned_cols=181 Identities=8% Similarity=-0.095 Sum_probs=129.9
Q ss_pred hcCCHHHHHHHHHhcCC---CChhhHHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCcCCH---------------
Q 007134 291 KCGIIIAAQRVFREMRK---RNAVSWSTL-------VVGLAVNGFGKEALELFKEMEIGGFVPGE--------------- 345 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 345 (616)
..++...|.+.|.+... .....|+.+ ...+...++..+++..+++-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46777777777777653 245567766 3455555555555555555443 22211
Q ss_pred -------HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCc----HH
Q 007134 346 -------VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPN----AV 414 (616)
Q Consensus 346 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd----~~ 414 (616)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223455667789999999999998874 235533666677789999999999999987754443 24
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcC--CC-CCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLE--PK-HSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...++++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888999999999999999999997433 43 3345678899999999999999999999763
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.22 E-value=6.1e-06 Score=79.98 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHhC
Q 007134 395 GLVKQAYEYIQNM 407 (616)
Q Consensus 395 g~~~~A~~~~~~m 407 (616)
+.+++|.++|.+.
T Consensus 184 ~~~~~a~~~f~~a 196 (281)
T 2c2l_A 184 KYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh
Confidence 4566666666655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-06 Score=74.31 Aligned_cols=100 Identities=11% Similarity=-0.024 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+.+.|++++|...|+...+. .+.+...|..+...|.+.|++++|+..|++. ...| +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444455555555555555554431 1123444444444444555555554444443 1222 2344444444444
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
..|++++|...++++++++|+++.
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HccCHHHHHHHHHHHHHhCCCchH
Confidence 445555555555544444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.3e-06 Score=73.96 Aligned_cols=125 Identities=9% Similarity=0.019 Sum_probs=90.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHH-HHhcCCH--
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL-LGRAGLV-- 397 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 397 (616)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+... +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34567777777777776642 2345667777777788888888888888776532 2346667777777 6788887
Q ss_pred HHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 398 KQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 398 ~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
++|...+++.. ..| +...|..+...+...|++++|...+++++++.|+++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 88888887762 345 5678888888999999999999999999999998654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6.4e-06 Score=71.37 Aligned_cols=99 Identities=8% Similarity=-0.048 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+.+.|++++|...|+.+.+. -+.+...|..+..+|.+.|++++|++.|++. ...| +...|..+..++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 34555556666677777777777776642 2234667777777777788888887777666 2445 457788888888
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCC
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
...|++++|+..+++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 88888888888888888888873
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.6e-06 Score=70.66 Aligned_cols=94 Identities=5% Similarity=-0.091 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-------chhh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG-------DYVL 452 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 452 (616)
..+..+...+.+.|++++|++.|++. .+.| +..+|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888999999999999776 3556 6788999999999999999999999999999887655 4556
Q ss_pred hhHHhHhcccchHHHHHHHHHhh
Q 007134 453 LSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 453 l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888889999999999988754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.1e-06 Score=70.69 Aligned_cols=105 Identities=13% Similarity=-0.029 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGAC 423 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~ 423 (616)
..+..+...+.+.|++++|...|+.+... -+.+...|..+..+|.+.|++++|+..|++.. ..| +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34445556677788888888888877652 22356777788888888888888888887762 444 567788888899
Q ss_pred HHcCCcHHHHHHHHHHHhcCCCCCCchhh
Q 007134 424 TIHGHSAIAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
...|++++|...+++++++.|+++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 99999999999999999999987755443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=7.8e-06 Score=69.14 Aligned_cols=98 Identities=10% Similarity=-0.048 Sum_probs=76.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
.+...|..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34666777777788888888888887765 2334 567788888888888888888888888888888888888888888
Q ss_pred hHhcccchHHHHHHHHHhhC
Q 007134 457 YAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 457 y~~~g~~~~a~~~~~~m~~~ 476 (616)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888877653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.6e-05 Score=64.72 Aligned_cols=107 Identities=12% Similarity=0.017 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|...+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3344444555555555555555555442 12234555555666666666666666665541 233 4556666666777
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
..|++++|...++++++.+|+++..+..++.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 7777777777777777777765544444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=70.95 Aligned_cols=96 Identities=8% Similarity=-0.132 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHH
Q 007134 309 NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMV 388 (616)
Q Consensus 309 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 388 (616)
+...|..+...+.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|...|+...+. -+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34566677777777777777777777777642 224566667777777777777777777777653 223366777777
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 007134 389 DLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m 407 (616)
.+|.+.|++++|.+.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 7777777777777777665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0011 Score=65.27 Aligned_cols=178 Identities=10% Similarity=-0.025 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHHcCC-CcHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 007134 111 WNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHT-YPFLLKAISKLA-DVRMGEQTHSVAIRNGFESLVFVQNSLVHMY 188 (616)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 188 (616)
|+.+-....+.+..++|++++++++.. .|+..| |+.--..+...+ +++++.+.++.+++.. +.+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344334444455567888888888874 455544 454444555556 4788888888887764 55666777766666
Q ss_pred Hhc-C-CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCCcc--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007134 189 AAF-G-HVKDACKVFELMSER---DLVAWNSVINGFASNGKPN--------EALTLFREMASEGVEPDGYTMVSLFSACA 255 (616)
Q Consensus 189 ~~~-g-~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 255 (616)
.+. + ++++++++++.+.+. |-.+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666 6 777888888877653 4556665555555545555 6777777776654 235555555555554
Q ss_pred hcCc-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007134 256 ELGA-------LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293 (616)
Q Consensus 256 ~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 293 (616)
+.+. ++++.+....++... +.|...++-+-..+.+.|
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4443 344444444444443 334444444443443333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00074 Score=66.48 Aligned_cols=172 Identities=13% Similarity=-0.000 Sum_probs=91.9
Q ss_pred HHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 007134 219 FASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG-ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKC-G-II 295 (616)
Q Consensus 219 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~ 295 (616)
..+.+..++|++++++++..+ +-+...++.--..+...+ .++++..+++.+.+.. +-+..+|+.-...+.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334445567777777777643 223334444444555555 4677777777766654 44555565555555554 5 66
Q ss_pred HHHHHHHHhcCCC---ChhhHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC----
Q 007134 296 IAAQRVFREMRKR---NAVSWSTLVVGLAVNGFGK--------EALELFKEMEIGGFVPGEVTFVGVLYACSHCGM---- 360 (616)
Q Consensus 296 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 360 (616)
++++++++.+.+. |..+|+--.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccc
Confidence 7777777777653 4455655444444444444 66666666666432 244555555555555543
Q ss_pred ---hHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC
Q 007134 361 ---VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395 (616)
Q Consensus 361 ---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 395 (616)
++++++.++++.. --+-|...|+-+-..+.+.|
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence 4455555554443 12223444444444444433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.5e-05 Score=67.25 Aligned_cols=127 Identities=7% Similarity=-0.103 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 390 (616)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...|+...+. .+.+...|..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345556666677777777777777766532 224556666666777777777777777777653 22346667777777
Q ss_pred HHhcCCHHHHHHHHHhCC-CCC-cHHHHH--HHHHHHHHcCCcHHHHHHHHHHH
Q 007134 391 LGRAGLVKQAYEYIQNML-MPP-NAVIWR--TLLGACTIHGHSAIAEIARSTLL 440 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m~-~~p-d~~~~~--~ll~a~~~~g~~~~a~~~~~~~~ 440 (616)
+.+.|++++|...+++.. ..| +...+. .+...+...|++++|...+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 778888888887776652 233 344443 33334666778888888777664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.14 E-value=4.2e-05 Score=62.80 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007134 181 QNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL 257 (616)
Q Consensus 181 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 257 (616)
+..+...|.+.|++++|.+.|+++.+ .+..+|..+...+.+.|++++|+..|+++.... +.+..++..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 33344444444444444444443321 123334444444444444444444444443321 12233333344444444
Q ss_pred CchHHHHHHHHHHHH
Q 007134 258 GALALGRRAHTYVWK 272 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~ 272 (616)
|++++|...+..+.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=1e-05 Score=67.47 Aligned_cols=95 Identities=7% Similarity=-0.149 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~ 424 (616)
.+..+...+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444455555666666666666666542 2233566666677777777777777777655 2344 4667777777888
Q ss_pred HcCCcHHHHHHHHHHHhcC
Q 007134 425 IHGHSAIAEIARSTLLQLE 443 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~ 443 (616)
..|++++|...++++++++
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888777
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=65.77 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...+..+...+...|++++|...+++.. ..| +...|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 5567788889999999999999998873 344 67889999999999999999999999999999999989999999999
Q ss_pred hcccchHHHHHHHHHhhC
Q 007134 459 YEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 459 ~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|.+.++...+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999988753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2e-05 Score=82.20 Aligned_cols=95 Identities=13% Similarity=0.034 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|++...+..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678888889999999999999998763 445 67899999999999999999999999999999999999999999999
Q ss_pred hcccchHHHH-HHHHHhh
Q 007134 459 YEQRWLNVQE-VRRTMVK 475 (616)
Q Consensus 459 ~~g~~~~a~~-~~~~m~~ 475 (616)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998874 4565543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=67.86 Aligned_cols=95 Identities=14% Similarity=-0.030 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPPN----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSN 455 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 455 (616)
...+..+...+.+.|++++|.+.|++. ...|+ ..+|..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 445555666666666666666666554 34454 4566666666666677777777777666666666666666666
Q ss_pred HhHhcccchHHHHHHHHHhh
Q 007134 456 LYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 456 ~y~~~g~~~~a~~~~~~m~~ 475 (616)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66677777777766666544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.8e-05 Score=64.10 Aligned_cols=114 Identities=10% Similarity=0.034 Sum_probs=74.7
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 186 (616)
++..|..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++.+++.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45677777788888888888888888877642 2244556666667777777777777777777664 345666666777
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhC
Q 007134 187 MYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASN 222 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 222 (616)
+|.+.|++++|.+.|++..+ .+...+..+...+.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 77777777777777766532 2333444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=4e-05 Score=65.44 Aligned_cols=108 Identities=11% Similarity=-0.043 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTL 419 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~l 419 (616)
..+..+...+...|++++|...|+...+ ..|+ ...|..+...|.+.|++++|.+.+++. ...| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3344444444555555555555555442 2233 445556666666667777776666554 2334 56677777
Q ss_pred HHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 420 LGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 420 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
..++...|++++|...++++++++|++...+..+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7888888888888888888888888766555444444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=4.3e-05 Score=79.97 Aligned_cols=116 Identities=8% Similarity=-0.095 Sum_probs=54.4
Q ss_pred HHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHH
Q 007134 287 DFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDE 363 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 363 (616)
..|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 34455566666666665543 2244555555555556666666666665555532 1123444555555555555555
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDL--LGRAGLVKQAYEYIQ 405 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 405 (616)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555554421 1112233333333 444455555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=9.5e-06 Score=85.03 Aligned_cols=115 Identities=6% Similarity=-0.034 Sum_probs=73.8
Q ss_pred HhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIA 432 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a 432 (616)
+.+.|++++|.+.|++..+. -+.+...|..+...|.+.|++++|++.+++. ...| +..+|..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44566666666666666542 1223566666777777777777777777655 2444 456777777777777777777
Q ss_pred HHHHHHHHhcCCCCCCchhhhhHH--hHhcccchHHHHHHH
Q 007134 433 EIARSTLLQLEPKHSGDYVLLSNL--YAYEQRWLNVQEVRR 471 (616)
Q Consensus 433 ~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 471 (616)
+..++++++++|+++..+..++.+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777777666666666 666777777777766
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=69.57 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 413 AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 413 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 467888888889999999999999999999999888899999999999999999999888765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0007 Score=66.29 Aligned_cols=187 Identities=11% Similarity=-0.006 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC-HHHHHHHH
Q 007134 260 LALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG--IIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGF-GKEALELF 333 (616)
Q Consensus 260 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g--~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~l~ 333 (616)
++++..+++.+.... +-+..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455666666666553 445566665555555666 36777777776653 456666666666666666 47777777
Q ss_pred HHHHhCCCcCCHHHHHHHHHHHhcC--------------CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc-----
Q 007134 334 KEMEIGGFVPGEVTFVGVLYACSHC--------------GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA----- 394 (616)
Q Consensus 334 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----- 394 (616)
.++.+..+ -|...|+.....+.+. +.++++.+.+..... --+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 77776542 2444554443333332 335566666666554 2223355555444444333
Q ss_pred ------CCHHHHHHHHHhC-CCCCcHHHHHHHHHHH-----HHcCCcHHHHHHHHHHHhcCCCCCCchh
Q 007134 395 ------GLVKQAYEYIQNM-LMPPNAVIWRTLLGAC-----TIHGHSAIAEIARSTLLQLEPKHSGDYV 451 (616)
Q Consensus 395 ------g~~~~A~~~~~~m-~~~pd~~~~~~ll~a~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 451 (616)
+.++++++.++++ ...||. .|..+..+. ...|..++....+.++.+++|...+-|.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~ 313 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 313 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHH
Confidence 3456666666555 244543 232211111 1234555666666666666665443333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.4e-05 Score=76.99 Aligned_cols=162 Identities=7% Similarity=-0.144 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcCCH----HHHHHHHHHHhcCCChHHHHHHHHHhHHhh---CCCCC-hhh
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIG-GFVPGE----VTFVGVLYACSHCGMVDEGFSYFKRMKDEY---GIMPK-IEH 383 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~ 383 (616)
+..+...|...|++++|.+.+.++... +..++. ...+.+-..+...|+.+.+..+++...... +..+. ...
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777788888888888888776542 111121 122223334455788888888887765421 22222 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-------CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC-------C
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNML-------MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS-------G 448 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-------~ 448 (616)
+..+...|...|++++|..++++.. .+|. ..++..++..|...|++++|...+++++...+... .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7788888889999999988887651 2332 45778888889999999999999888865443221 2
Q ss_pred chhhhhHHhHhcccchHHHHHHHHHh
Q 007134 449 DYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 449 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
.+..++..+...|++++|.+.+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34466777778888988888776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=9.2e-05 Score=61.29 Aligned_cols=116 Identities=15% Similarity=-0.042 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 390 (616)
..|..+...+...|++++|++.|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHH
Confidence 344455555556666666666666655432 123445555555666666666666666666542 12235556666666
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCc
Q 007134 391 LGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~ 429 (616)
+.+.|++++|...+++. ...| +...+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 66666666666666554 2233 445555555555555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.2e-05 Score=65.27 Aligned_cols=101 Identities=8% Similarity=-0.169 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHH
Q 007134 344 GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLG 421 (616)
Q Consensus 344 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~ 421 (616)
+...+..+...+...|++++|...|+..... .+.+...|..+...+.+.|++++|...+++.. ..| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3455666666666777777777777766552 22335667777777777777777777776652 334 5678888888
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 422 ACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
++...|++++|...+++++++.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhH
Confidence 8888889999999998888888773
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.99 E-value=3.3e-05 Score=76.86 Aligned_cols=143 Identities=7% Similarity=-0.066 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 007134 107 NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVH 186 (616)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 186 (616)
+...|..+...|.+.|++++|+..|++.++.. |+...+ ..+.+.++. +....++..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 45677888888888888888888888887743 333110 001111110 011345566666
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHH
Q 007134 187 MYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALG 263 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 263 (616)
+|.+.|++++|...|++..+ .+..+|..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665532 345566666666666677777776666666542 22445555666666666666666
Q ss_pred -HHHHHHHH
Q 007134 264 -RRAHTYVW 271 (616)
Q Consensus 264 -~~~~~~~~ 271 (616)
..++..|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 33444443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00045 Score=67.67 Aligned_cols=180 Identities=11% Similarity=0.023 Sum_probs=131.2
Q ss_pred HHHHHHHHHhcC---CCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC-hHHHHHHH
Q 007134 295 IIAAQRVFREMR---KRNAVSWSTLVVGLAVNG--FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM-VDEGFSYF 368 (616)
Q Consensus 295 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 368 (616)
+++++.+++.+. .++..+|+.-.-.+...| .++++++++.++.+.. +-|...|+.-...+.+.|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777765 357788988888888888 4899999999999864 2366777777777777888 58999999
Q ss_pred HHhHHhhCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHc------
Q 007134 369 KRMKDEYGIMPKIEHFGCMVDLLGRA--------------GLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIH------ 426 (616)
Q Consensus 369 ~~m~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~------ 426 (616)
+.+.+. -+-|...|+.....+.+. +.++++++.+++.- ..| |...|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999873 345677787776666655 55888999887763 556 788898766655544
Q ss_pred -----CCcHHHHHHHHHHHhcCCCCCCchhhhhHHh---HhcccchHHHHHHHHHhhCC
Q 007134 427 -----GHSAIAEIARSTLLQLEPKHSGDYVLLSNLY---AYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 427 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y---~~~g~~~~a~~~~~~m~~~~ 477 (616)
+.++++++.++++++++|++.-.+..++... ...|..++....+.++.+.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578999999999999998743333332221 23567778888888887643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=9.2e-06 Score=73.97 Aligned_cols=161 Identities=11% Similarity=-0.086 Sum_probs=78.7
Q ss_pred HHHHHHhCCCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCC
Q 007134 82 LIYAIVSLSFPMSYAHNIFSHVQD---PNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLAD 158 (616)
Q Consensus 82 li~~y~~~~~~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~ 158 (616)
.+......| +++.|.+.|+.... .....|..+...+.+.|++++|+..|++..... |+...+... .
T Consensus 10 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~ 78 (198)
T 2fbn_A 10 HSSGRENLY-FQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------H
T ss_pred hhhhhhhhh-hccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------h
Confidence 334444455 77777777764332 245678888889999999999999999998742 222100000 0
Q ss_pred cHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHH
Q 007134 159 VRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREM 235 (616)
Q Consensus 159 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 235 (616)
... ... .....++..+..+|.+.|++++|...|++..+ .+..+|..+..+|...|++++|+..|++.
T Consensus 79 ~~~----~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 79 LLD----KKK------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH----HHH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH----HHH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 000 00123444555555555666655555554432 24445555555666666666666666655
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCchHHHH
Q 007134 236 ASEGVEPDGYTMVSLFSACAELGALALGR 264 (616)
Q Consensus 236 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 264 (616)
.... +-+...+..+..++...++.+++.
T Consensus 149 l~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 149 ASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 223344444444445555544444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.96 E-value=6.1e-05 Score=60.54 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---cHHHHHHHHHHH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP---NAVIWRTLLGAC 423 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---d~~~~~~ll~a~ 423 (616)
+..+...+...|++++|...|+...+. .+.+...|..+...+.+.|++++|.+.+++.. ..| +..+|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344445555666666666666665542 22335566666777777777777777776652 333 467778888888
Q ss_pred HHc-CCcHHHHHHHHHHHhcCCCCC
Q 007134 424 TIH-GHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 424 ~~~-g~~~~a~~~~~~~~~~~p~~~ 447 (616)
... |++++|.+.++++++..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888887643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.6e-05 Score=68.43 Aligned_cols=61 Identities=10% Similarity=-0.127 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhc-------CCCCCCch----hhhhHHhHhcccchHHHHHHHHHhh
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQL-------EPKHSGDY----VLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.|..+..++...|++++|+..+++++++ +|++...| ..++.++...|++++|...+++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777777 77777777 7777777777777777777777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.9e-05 Score=64.52 Aligned_cols=107 Identities=7% Similarity=-0.083 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-C----CCc----HHHHHH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-M----PPN----AVIWRT 418 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~----~pd----~~~~~~ 418 (616)
+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...+++.. . .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444455555555555554432 12234445555555555566666655555441 1 112 556667
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 457 (616)
+...+...|++++|...++++++..|+ +.....+..++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 777777788888888888888777763 44444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.4e-06 Score=68.26 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHhCC-C---CC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHH
Q 007134 394 AGLVKQAYEYIQNML-M---PP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQE 468 (616)
Q Consensus 394 ~g~~~~A~~~~~~m~-~---~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 468 (616)
.|++++|+..|++.. . .| +..+|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455666666665542 2 24 345666666677777777777777777777777777677777777777777777777
Q ss_pred HHHHHhh
Q 007134 469 VRRTMVK 475 (616)
Q Consensus 469 ~~~~m~~ 475 (616)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766644
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.8e-05 Score=63.59 Aligned_cols=97 Identities=10% Similarity=0.019 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHc
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIH 426 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~ 426 (616)
..+...+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|+..|++. ...| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33445566777777777777777652 2234677777778888888888888888766 3455 567888888888888
Q ss_pred CCcHHHHHHHHHHHhcCCCCC
Q 007134 427 GHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~~~ 447 (616)
|++++|+..++++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999888888743
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-05 Score=65.29 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCc-H---HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---CCchhhhhHHh
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNML-MPPN-A---VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH---SGDYVLLSNLY 457 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~-~~pd-~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y 457 (616)
.+...+.+.|++++|.+.|++.. ..|+ . ..+..+..++...|++++|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34455666667777766666542 2222 2 356666667777777777777777777777776 44566777777
Q ss_pred HhcccchHHHHHHHHHhh
Q 007134 458 AYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 458 ~~~g~~~~a~~~~~~m~~ 475 (616)
...|++++|.+.++...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00012 Score=63.23 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=26.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCc-CC----HHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFV-PG----EVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
+..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555554431100 11 1233444444555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=3.2e-05 Score=64.27 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC-------CCchh
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH-------SGDYV 451 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 451 (616)
...|..+...+...|++++|...|++.. ..| +..++..+...+...|++++|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4567788889999999999999998773 334 67889999999999999999999999999988876 56778
Q ss_pred hhhHHhHhcccchHHHHHHHHHhh
Q 007134 452 LLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 452 ~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++.+|...|++++|.+.++...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 899999999999999999998876
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.8e-05 Score=76.13 Aligned_cols=138 Identities=7% Similarity=-0.076 Sum_probs=102.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMV 388 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 388 (616)
...|..+...+.+.|++++|++.|++..+. .|+.. .....++ .. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~-------~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDAD-------GA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHH-------HG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHH-------HH---HHHHHHHHHHHHHH
Confidence 345777777788888888888888877652 11100 0001111 10 1112 356788889
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHH
Q 007134 389 DLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466 (616)
Q Consensus 389 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 466 (616)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877 4566 6789999999999999999999999999999999888888899998888888777
Q ss_pred HHH
Q 007134 467 QEV 469 (616)
Q Consensus 467 ~~~ 469 (616)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00037 Score=71.66 Aligned_cols=122 Identities=10% Similarity=-0.107 Sum_probs=77.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-----C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--C--CcCC-HHHHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRK-----R----NAVSWSTLVVGLAVNGFGKEALELFKEMEIG--G--FVPG-EVTFVGV 351 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g--~~p~-~~t~~~l 351 (616)
...+...|+.+.|.++++.... . -..++..+...|...|++++|..++++.... + -+|. ...+..+
T Consensus 102 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (434)
T 4b4t_Q 102 EKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLE 181 (434)
T ss_dssp HHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 3344445666666666654431 1 1235666777788888888888888776542 1 1222 2456777
Q ss_pred HHHHhcCCChHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 352 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
+..|...|++++|..+++.......-.++ ...+..+...+...|++++|...|.+.
T Consensus 182 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 182 SKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 78888888888888888876543211121 345666777778888888887777554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.5e-05 Score=67.45 Aligned_cols=67 Identities=18% Similarity=0.020 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 567888888999999999999998776 3455 678999999999999999999999999999999866
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=6e-05 Score=65.11 Aligned_cols=130 Identities=12% Similarity=-0.033 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC----CCCc----H
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNML----MPPN----A 413 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~pd----~ 413 (616)
.++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.. ..++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45677778888999999999999988763221122 2467888899999999999999997751 1112 4
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577888889999999999999999997653321 34567899999999999999999987754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.6e-05 Score=77.75 Aligned_cols=147 Identities=12% Similarity=-0.076 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 310 AVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 310 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
...|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 445667777777888888888888887763 454332 223333443332221 236778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh-HhcccchHH
Q 007134 390 LLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY-AYEQRWLNV 466 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~a 466 (616)
+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999776 3445 6788999999999999999999999999999999888888888774 345677778
Q ss_pred HHHHHHHhhC
Q 007134 467 QEVRRTMVKE 476 (616)
Q Consensus 467 ~~~~~~m~~~ 476 (616)
.+.++.|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888877543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00065 Score=72.44 Aligned_cols=168 Identities=8% Similarity=-0.065 Sum_probs=128.1
Q ss_pred HHHHHHHHHhcCC---CChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCC--
Q 007134 295 IIAAQRVFREMRK---RNAVSWSTLVVGLAVNGF----------GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCG-- 359 (616)
Q Consensus 295 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 359 (616)
-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+... -+...|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccc
Confidence 4566777776653 345567766666666666 8889999998887542 24566777777777888
Q ss_pred ChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHc----------
Q 007134 360 MVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG-LVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIH---------- 426 (616)
Q Consensus 360 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~---------- 426 (616)
+++++.+.++.+.+. -+.+...|+.-.-.+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 669999999998873 3345777887777788888 889999998887 3556 778898888777663
Q ss_pred ----CCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchH
Q 007134 427 ----GHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465 (616)
Q Consensus 427 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 465 (616)
+.++++.+.+++++.++|++..+|..+..++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999998888655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00018 Score=74.96 Aligned_cols=123 Identities=9% Similarity=0.006 Sum_probs=93.9
Q ss_pred HhcCCChHHHHHHHHHhHHhhC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCcH-HHHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYG--IMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM---------LMPPNA-VIWRT 418 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ 418 (616)
+...|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4467888888877777655321 1222 556788888888889988888888665 245654 68899
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHh-----cCCCCCCc---hhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQ-----LEPKHSGD---YVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
|...|...|++++|+.+++++++ ++|+.|.+ ...+..++...|++++|..+++++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 57776544 3468888889999999999999998754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00013 Score=62.78 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCc-HHHH----HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM--------LMPPN-AVIW----RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd-~~~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.|..+..++.+.|++++|+..+++. .+.|| ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666665444 24785 5688 999999999999999999999999999998876
Q ss_pred hhhhh
Q 007134 450 YVLLS 454 (616)
Q Consensus 450 ~~~l~ 454 (616)
+.-+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00017 Score=59.87 Aligned_cols=96 Identities=11% Similarity=-0.002 Sum_probs=58.5
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc----HHHHHHHHHHHHHc
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN----AVIWRTLLGACTIH 426 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~ll~a~~~~ 426 (616)
..+...|++++|...|+.+.+...-.+. ...+..+...+.+.|++++|...|++.. ..|+ ...+..+..++...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444556666666666655543111110 1355556666667777777776666552 2232 45667777778888
Q ss_pred CCcHHHHHHHHHHHhcCCCCCC
Q 007134 427 GHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 427 g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
|++++|...++++++..|+++.
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHH
T ss_pred CCHHHHHHHHHHHHHHCCCChH
Confidence 8888888888888888887543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.76 E-value=7.2e-05 Score=74.50 Aligned_cols=152 Identities=9% Similarity=-0.042 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcC
Q 007134 279 VNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHC 358 (616)
Q Consensus 279 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 358 (616)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888899999999999999998653222111 1222333444433221 13677788888999
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCc-HHHHHHHHHH-HHHcCCcHHHHHH
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPN-AVIWRTLLGA-CTIHGHSAIAEIA 435 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd-~~~~~~ll~a-~~~~g~~~~a~~~ 435 (616)
|++++|...++...+. -+.+...|..+..+|...|++++|...|++.. ..|+ ...+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998763 23457889999999999999999999998873 6664 4555555554 3455677888999
Q ss_pred HHHHHhcCCCCC
Q 007134 436 RSTLLQLEPKHS 447 (616)
Q Consensus 436 ~~~~~~~~p~~~ 447 (616)
++++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00036 Score=58.13 Aligned_cols=25 Identities=12% Similarity=-0.096 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 314 STLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 314 ~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444445555555555554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.70 E-value=2.8e-05 Score=63.88 Aligned_cols=91 Identities=10% Similarity=0.039 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHhHHhhC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHH
Q 007134 358 CGMVDEGFSYFKRMKDEYG--IMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAE 433 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~ 433 (616)
.|++++|...|++..+. + -+.+...+..+...|.+.|++++|++.|++.. ..| +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45556666666665531 1 01224556667777777777777777776652 344 4667777888888888888888
Q ss_pred HHHHHHHhcCCCCCCc
Q 007134 434 IARSTLLQLEPKHSGD 449 (616)
Q Consensus 434 ~~~~~~~~~~p~~~~~ 449 (616)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888876543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=7.6e-05 Score=60.11 Aligned_cols=92 Identities=15% Similarity=-0.044 Sum_probs=73.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC------CCchh
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH------SGDYV 451 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 451 (616)
+...+..+...+.+.|++++|.+.|++. ...| +..+|..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888999999999988776 2444 67888999999999999999999999999999987 55666
Q ss_pred hhhHHhHhcccchHHHHHHH
Q 007134 452 LLSNLYAYEQRWLNVQEVRR 471 (616)
Q Consensus 452 ~l~~~y~~~g~~~~a~~~~~ 471 (616)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777776655444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0001 Score=58.57 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5778889999999999999999999999999999999999999999999999999999988765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00022 Score=71.81 Aligned_cols=112 Identities=4% Similarity=-0.105 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-cHHHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPP-NAVIWRTLLGACT 424 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~ll~a~~ 424 (616)
..+..+...+.+.|++++|...|++..+.. ++ .......+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345555566666677777776666665410 00 00000111111 1234 4578899999999
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=4.2e-05 Score=65.70 Aligned_cols=85 Identities=18% Similarity=0.081 Sum_probs=67.6
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCC----------cHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 392 GRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGH----------SAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4556677777777655 2445 56677777777766665 4699999999999999999999999999998
Q ss_pred cc-----------cchHHHHHHHHHhhC
Q 007134 460 EQ-----------RWLNVQEVRRTMVKE 476 (616)
Q Consensus 460 ~g-----------~~~~a~~~~~~m~~~ 476 (616)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999998764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00034 Score=53.81 Aligned_cols=81 Identities=23% Similarity=0.220 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
...+..+...+.+.|++++|...+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888766 2334 56788888888999999999999999999999988888888887776
Q ss_pred hcc
Q 007134 459 YEQ 461 (616)
Q Consensus 459 ~~g 461 (616)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00029 Score=57.36 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=59.9
Q ss_pred HHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 400 AYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 400 A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455444 3445 5678888888888888888888888888888888888888888888888888888888887765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00088 Score=69.62 Aligned_cols=120 Identities=5% Similarity=-0.137 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCC----------------HHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPG----------------EVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
..|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|...|+.+.+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34555666666677777777777666652 222 356777777788888888888888887752
Q ss_pred hCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHH
Q 007134 375 YGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEI 434 (616)
Q Consensus 375 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~ 434 (616)
-+.+...|..+..+|.+.|++++|...|++. .+.| +..++..+..++...++.+++..
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334777778888888888888888888776 4556 44577777777777777776654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.001 Score=51.81 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=59.5
Q ss_pred CcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCC
Q 007134 411 PNAVIWRTLLGACTIHGH---SAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKER 477 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 477 (616)
+|...+..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|...++++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467788888888865555 7999999999999999999999999999999999999999999998754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00082 Score=68.88 Aligned_cols=116 Identities=13% Similarity=0.115 Sum_probs=82.5
Q ss_pred HHHHHhcCCHHHHHHHHHhCC---------CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cCCCCC---Cc
Q 007134 388 VDLLGRAGLVKQAYEYIQNML---------MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQ-----LEPKHS---GD 449 (616)
Q Consensus 388 i~~~~~~g~~~~A~~~~~~m~---------~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 449 (616)
+.-+.+.|++++|++++++.- ..|+ ..+++.|..+|...|++++|+.+++++++ +.|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556777777777776541 2232 35788888888888999999888888853 345544 34
Q ss_pred hhhhhHHhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 007134 450 YVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLK 521 (616)
Q Consensus 450 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 521 (616)
+..|+.+|..+|++++|..++++..+--.. .-...||...+++..|.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 668999999999999999999887652111 112469999999988888776665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00062 Score=54.55 Aligned_cols=66 Identities=8% Similarity=-0.032 Sum_probs=61.0
Q ss_pred CcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 411 PNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
++...|..+...+...|++++|...++++++++|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356788889999999999999999999999999999999999999999999999999999998764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.002 Score=67.08 Aligned_cols=123 Identities=14% Similarity=-0.060 Sum_probs=84.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhC---CCc---CC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhh----CC-CCC-hhhHH
Q 007134 319 GLAVNGFGKEALELFKEMEIG---GFV---PG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEY----GI-MPK-IEHFG 385 (616)
Q Consensus 319 ~~~~~g~~~~A~~l~~~m~~~---g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~~-~p~-~~~~~ 385 (616)
.+...|++++|+.++++..+. -+- |+ ..+++.|..+|...|++++|..++++..+-+ |- -|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345677888888877776542 112 22 2567777888888888888888887765421 21 122 55688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--------C-CCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNM--------L-MPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m--------~-~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
.|...|...|++++|+.++++. | -.|+. .+...|-.++...+.+++|+..++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999988888665 2 34544 3455566677788889999999888753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00075 Score=69.06 Aligned_cols=103 Identities=11% Similarity=0.022 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHhC---------CCCCcH-HHHHHHHHHHHHcCCcHHHHHHHHHHHh-----cCCCCC---CchhhhhH
Q 007134 394 AGLVKQAYEYIQNM---------LMPPNA-VIWRTLLGACTIHGHSAIAEIARSTLLQ-----LEPKHS---GDYVLLSN 455 (616)
Q Consensus 394 ~g~~~~A~~~~~~m---------~~~pd~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 455 (616)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++ ++|+++ ..+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666543 133443 5788888888888888888888888753 455544 34678899
Q ss_pred HhHhcccchHHHHHHHHHhhCCCccCCceeeEEeCCEEEEEEeCCCCCcchHHHHHHHH
Q 007134 456 LYAYEQRWLNVQEVRRTMVKERVKKTPGHSLVELGNRVFEFFMGDRSHPQTEEIHAMLA 514 (616)
Q Consensus 456 ~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 514 (616)
+|..+|++++|..++++..+--.+ .-...||...++...|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 999999999999998887652111 11246888777776553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0061 Score=64.90 Aligned_cols=150 Identities=13% Similarity=0.024 Sum_probs=119.9
Q ss_pred cCCHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHhcCCC----------hHHHHHHHHHhHHhhCCCCChhhHHHHHHHH
Q 007134 323 NGFGKEALELFKEMEIGGFVPGE-VTFVGVLYACSHCGM----------VDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 391 (616)
....++|++.++++.+. .|+. ..|+.--.++.+.|+ ++++...++.+.+. -+.+...|+.-.-.+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34567889999999984 5654 445555555555666 89999999999873 344577888888888
Q ss_pred HhcC--CHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcC-CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhc------
Q 007134 392 GRAG--LVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHG-HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE------ 460 (616)
Q Consensus 392 ~~~g--~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~------ 460 (616)
.+.| +++++++.++++. ..| |...|+.-..+....| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8999 7799999999883 445 7889999888888999 899999999999999999999999888887764
Q ss_pred --------ccchHHHHHHHHHhhC
Q 007134 461 --------QRWLNVQEVRRTMVKE 476 (616)
Q Consensus 461 --------g~~~~a~~~~~~m~~~ 476 (616)
++++++.+.++...+.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 6678888888777653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.011 Score=49.76 Aligned_cols=110 Identities=9% Similarity=-0.107 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHH
Q 007134 324 GFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVKQ 399 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 399 (616)
+++++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35667777777777666 33333 555566666677777777776653 345556666666655 566666
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhc
Q 007134 400 AYEYIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEIARSTLLQL 442 (616)
Q Consensus 400 A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~ 442 (616)
|.+.|++.-..-+...+..|...|.. .++.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 66666554322344555555555555 55566666666655544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00034 Score=59.98 Aligned_cols=87 Identities=9% Similarity=0.011 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHc
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL----------VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIH 426 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~ 426 (616)
+.+++|.+.++...+. -+.+...|..+..++.+.|+ +++|+..|++. .+.| +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445555555555432 12234555555555555444 35777777665 3556 456777788887766
Q ss_pred -----------CCcHHHHHHHHHHHhcCCCCC
Q 007134 427 -----------GHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 427 -----------g~~~~a~~~~~~~~~~~p~~~ 447 (616)
|++++|+..|+++++++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 489999999999999999854
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0037 Score=52.72 Aligned_cols=112 Identities=7% Similarity=-0.067 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHH
Q 007134 359 GMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEI 434 (616)
Q Consensus 359 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~ 434 (616)
++.++|..+|+...+. + .|+ .. |...|...+.+++|.+.|++.-..-+...+..|...|.. .+++++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999998874 3 233 33 777888888999999999887544578888888888888 889999999
Q ss_pred HHHHHHhcCCCCCCchhhhhHHhHh----cccchHHHHHHHHHhhCCC
Q 007134 435 ARSTLLQLEPKHSGDYVLLSNLYAY----EQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 435 ~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 478 (616)
.++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999876 457788999999998 8999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0015 Score=52.87 Aligned_cols=80 Identities=15% Similarity=0.034 Sum_probs=56.5
Q ss_pred HHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 364 GFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 364 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
|...|+...+ .-+.+...+..+...|.+.|++++|+..|++.. ..| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555543 222346677777777888888888888776652 344 566788888888888888888888888887
Q ss_pred cCCC
Q 007134 442 LEPK 445 (616)
Q Consensus 442 ~~p~ 445 (616)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0016 Score=49.89 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+...|..+...+...|++++|+..++++++.+|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678888899999999999999999999999999989999999999999999999999988663
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.12 Score=57.60 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=78.8
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCcc
Q 007134 147 PFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPN 226 (616)
Q Consensus 147 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 226 (616)
..++..+.+.|..+.|.++.+ +. ..-.......|++++|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 445555555666665554432 11 111334567788888888877663 4567888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 007134 227 EALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREM 305 (616)
Q Consensus 227 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m 305 (616)
.|.+.|.++.. |..+...+...++.+...++-......|. ++.-..+|.+.|++++|.++|.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887743 33444445556666665555554444441 233344566677777766665443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.01 Score=46.65 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
..|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444321 1122334444444444444444444444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.029 Score=55.17 Aligned_cols=138 Identities=12% Similarity=-0.017 Sum_probs=71.4
Q ss_pred CCChhhHHHHHHHHHH--cC---CHHHHHHHHHHHHhCCCcCCH-HHHHHHHHHHh----cCC-C---hHHHHHHHHHhH
Q 007134 307 KRNAVSWSTLVVGLAV--NG---FGKEALELFKEMEIGGFVPGE-VTFVGVLYACS----HCG-M---VDEGFSYFKRMK 372 (616)
Q Consensus 307 ~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~----~~g-~---~~~a~~~~~~m~ 372 (616)
..+..+|...+.+... .+ ...+|..+|++..+ ..|+- ..+..+..++. ..+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3466666666655432 22 24678888888877 35653 33333322222 000 0 001111111111
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH 446 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 446 (616)
.....+.+...|..+...+...|++++|...+++.. ..|+...|..+...+...|+.++|.+.+++++.++|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 101223445566666555555677777776666652 44666666666666666677777777777777666653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.011 Score=60.54 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=65.6
Q ss_pred cCCChHHHHHHHHHhHHhhC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCcH-HHHHHHH
Q 007134 357 HCGMVDEGFSYFKRMKDEYG--IMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM---------LMPPNA-VIWRTLL 420 (616)
Q Consensus 357 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ll 420 (616)
+.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35677777777776654321 2222 456778888888888888888887665 245654 6889999
Q ss_pred HHHHHcCCcHHHHHHHHHHHh-----cCCCCC
Q 007134 421 GACTIHGHSAIAEIARSTLLQ-----LEPKHS 447 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~-----~~p~~~ 447 (616)
..|...|++++|+.+++++++ ++|+.|
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 999999999999999999864 456654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.11 Score=42.41 Aligned_cols=140 Identities=11% Similarity=0.023 Sum_probs=97.1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 321 AVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 321 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+- .|. ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SCG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------HhhhcHHHH
Confidence 3467788888888887653 24455666665555555666666666666432 332 245566666
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 401 YEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 401 ~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
...+-.++ .+....+..+......|+-++-.++...++..++.++....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66665554 234455666777888899998888888876666666888889999999999999999999999998875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.11 Score=57.74 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=23.1
Q ss_pred HhcCCHHHHHH-HHhhcCCCChhHHHHHHHHHHhCCCccHHHHHH
Q 007134 189 AAFGHVKDACK-VFELMSERDLVAWNSVINGFASNGKPNEALTLF 232 (616)
Q Consensus 189 ~~~g~~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (616)
...+++++|.+ ++..++. ......++..+.+.|.+++|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecC
Confidence 45677777776 5543330 112255556666666666666544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.018 Score=58.78 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=63.0
Q ss_pred HhcCCChHHHHHHHHHhHHhhC--CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCcH-HHHHH
Q 007134 355 CSHCGMVDEGFSYFKRMKDEYG--IMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNM---------LMPPNA-VIWRT 418 (616)
Q Consensus 355 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~pd~-~~~~~ 418 (616)
+.+.|++++|..++++..+... +.|+ ..+++.+..+|...|++++|+.++++. +..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4455666666666666553211 1222 445677777777777777777777654 245554 67888
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHh-----cCCCCCCc
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQ-----LEPKHSGD 449 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 449 (616)
|...|...|++++|+.+++++++ ++|+.|.+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 88999999999999999988853 56765543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.012 Score=49.73 Aligned_cols=65 Identities=6% Similarity=-0.109 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcC-C-CCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 411 PNAVIWRTLLGACTIHG---HSAIAEIARSTLLQLE-P-KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
++..+...+..++.+.+ ++++|+.+++.+++.+ | +....+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666667777777777 5668888888888777 6 3456667788888888888888888888765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.014 Score=45.42 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=59.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCC-cHH-HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 387 MVDLLGRAGLVKQAYEYIQNML-MPP-NAV-IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m~-~~p-d~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
....+.+.|++++|.+.+++.. ..| +.. .|..+..++...|++++|+..++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556778888999988887762 445 556 88888889999999999999999999999987765421 455
Q ss_pred hHHHHHHHHH
Q 007134 464 LNVQEVRRTM 473 (616)
Q Consensus 464 ~~a~~~~~~m 473 (616)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5666555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.005 Score=48.03 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=53.1
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCCCCCC-chhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEPKHSG-DYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
....+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455678899999999999999999999988 9999999999999999999999998764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.25 Score=42.83 Aligned_cols=129 Identities=16% Similarity=0.135 Sum_probs=87.7
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHH
Q 007134 287 DFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFS 366 (616)
Q Consensus 287 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 366 (616)
+...++|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... |..+.-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456788999998888776 4677899999999999999999999988653 3334444555677766555
Q ss_pred HHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 007134 367 YFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTL 439 (616)
Q Consensus 367 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~ 439 (616)
+-+....+ .-++.-...+.-.|+++++.+++.+.+.-|....+ ...+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 44443331 12455556677789999999999887744433222 24467777777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.039 Score=54.20 Aligned_cols=131 Identities=11% Similarity=0.041 Sum_probs=88.9
Q ss_pred cCCHHHHHHHHHHHh--cC---CChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHH----hcC-------CHHHHHHHH
Q 007134 342 VPGEVTFVGVLYACS--HC---GMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLG----RAG-------LVKQAYEYI 404 (616)
Q Consensus 342 ~p~~~t~~~ll~a~~--~~---g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~~ 404 (616)
+.+...|...+.+.. .. ....+|..+|++..+ +.|+ ...|..+.-+|. ..+ .+..+.+-.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 344555666665443 22 345789999999885 3466 444443333332 111 112233322
Q ss_pred HhCCC-CCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 405 QNMLM-PPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 405 ~~m~~-~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
..+.. ..+..+|..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++....
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33332 347788888888788889999999999999999975 567789999999999999999999888664
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.47 E-value=1.1 Score=38.86 Aligned_cols=129 Identities=12% Similarity=0.094 Sum_probs=79.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 007134 186 HMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRR 265 (616)
Q Consensus 186 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 265 (616)
+...++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456788888888887776 3567788888888888888888888887643 3344445555666666555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 007134 266 AHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEM 336 (616)
Q Consensus 266 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 336 (616)
+-+.....| -+|.-...+.-.|+++++.++|.+..+.... ......+|..+.|.++..++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence 555544444 1233344455567777777777655432111 11112255666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.042 Score=51.80 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=63.3
Q ss_pred HHHHHHHHhC-CCCCc---HHHHHHHHHHHHH-----cCCcHHHHHHHHHHHhcCCCC-CCchhhhhHHhHhc-ccchHH
Q 007134 398 KQAYEYIQNM-LMPPN---AVIWRTLLGACTI-----HGHSAIAEIARSTLLQLEPKH-SGDYVLLSNLYAYE-QRWLNV 466 (616)
Q Consensus 398 ~~A~~~~~~m-~~~pd---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~a 466 (616)
.+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ...++..+..++.. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4444444443 24555 4577777777777 489999999999999999974 88888888888874 889999
Q ss_pred HHHHHHHhhCCCccCC
Q 007134 467 QEVRRTMVKERVKKTP 482 (616)
Q Consensus 467 ~~~~~~m~~~~~~~~~ 482 (616)
.+.+++....+....|
T Consensus 260 ~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 260 DEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHcCCCCCCC
Confidence 9999888876655334
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.092 Score=41.39 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 381 IEHFGCMVDLLGRAGLVKQAYEYIQNML---------MPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
..-+-.|...+.+.|+++.|...|+... -.+...++..|..++.+.|+++.|...++++++++|+++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3344455566666666666666664431 12356788889999999999999999999999999987554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.11 Score=40.13 Aligned_cols=67 Identities=10% Similarity=-0.025 Sum_probs=52.2
Q ss_pred CChhhHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCC
Q 007134 379 PKIEHFGCMVDLLGRAGL---VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..++++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677777777755444 68888888776 3556 5678888888889999999999999999999888
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.0035 Score=62.92 Aligned_cols=239 Identities=12% Similarity=0.020 Sum_probs=148.0
Q ss_pred CChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 007134 74 NNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAI 153 (616)
Q Consensus 74 ~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~ 153 (616)
+.+.+|..|..++...+ .+.+|..-| +...|+..|..+|.+..+.|.+++-+..+.-.++.. -+...=+.++-+|
T Consensus 52 n~p~VWs~LgkAqL~~~-~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKG-MVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSS-SCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccC-chHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 45567777777777776 777777766 334566667778888888888887777765444432 2334445677778
Q ss_pred HcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCC------------------------CCh
Q 007134 154 SKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSE------------------------RDL 209 (616)
Q Consensus 154 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~------------------------~~~ 209 (616)
++.+++.+-.+.. -.|+..-...+.+-+...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 8777765543332 134444445566777777777777777766542 356
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007134 210 VAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFY 289 (616)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 289 (616)
.||-.+-.+|...+.+.-|.-.--.+.- .|| ....++.-|...|.+++-..+++.-... -.....+++-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHH
Confidence 6788888888888877766554433331 222 1223444566667777766666654421 134667788888788
Q ss_pred HhcCCHHHHHHHHHhcCC----C-------ChhhHHHHHHHHHHcCCHHHHHH
Q 007134 290 SKCGIIIAAQRVFREMRK----R-------NAVSWSTLVVGLAVNGFGKEALE 331 (616)
Q Consensus 290 ~~~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 331 (616)
+|- +.++-.+.++..-. | ....|..++-.|.+..+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 775 33444444433221 1 45578888888888888887753
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.11 E-value=0.18 Score=42.55 Aligned_cols=84 Identities=14% Similarity=-0.093 Sum_probs=54.9
Q ss_pred HHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHhCC-CC-C--cHHHHHHHHHHHHHcCCcHHHHH
Q 007134 362 DEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG---LVKQAYEYIQNML-MP-P--NAVIWRTLLGACTIHGHSAIAEI 434 (616)
Q Consensus 362 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~-p--d~~~~~~ll~a~~~~g~~~~a~~ 434 (616)
..+++.|.+..+ .-.++..+.-.+.-++.+.+ +.++++.++++.- .. | +...+-.|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344444544433 12255666666666666666 4456666665552 22 4 23455667778899999999999
Q ss_pred HHHHHHhcCCCCC
Q 007134 435 ARSTLLQLEPKHS 447 (616)
Q Consensus 435 ~~~~~~~~~p~~~ 447 (616)
.++.+++.+|++.
T Consensus 93 y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 93 YVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHhcCCCCH
Confidence 9999999999854
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.13 Score=41.78 Aligned_cols=64 Identities=6% Similarity=-0.100 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHcCCcH---HHHHHHHHHHhcC-C-CCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSA---IAEIARSTLLQLE-P-KHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+..+--.+..++.+..+.. +++.+++.+++.+ | ..-.....|+-++.+.|++++|.+..+.+.+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333444444444332 2555555554433 2 1122333455555555555555555555543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.68 E-value=8.5 Score=40.85 Aligned_cols=115 Identities=10% Similarity=-0.021 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHhCC-CcCCHH--HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 324 GFGKEALELFKEMEIGG-FVPGEV--TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
.+.+.|..+|....... ..+... ....+.......+...++...+...... .++.....-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998886543 222221 2223333444455355666666665432 23333333344445578999999
Q ss_pred HHHHHhCCCCC-c-HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 401 YEYIQNMLMPP-N-AVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 401 ~~~~~~m~~~p-d-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
...|+.|+..+ + ..-.-=+..+....|+.++|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999997443 2 22222344577788999999999999875
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.15 E-value=1.1 Score=37.05 Aligned_cols=91 Identities=5% Similarity=-0.037 Sum_probs=60.2
Q ss_pred CCcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHhcCCCC-CCchhhhhHHhHhcccchHHHHHHHHHhhCCCccCCcee
Q 007134 410 PPNAVIWRTLLGACTIHGH---SAIAEIARSTLLQLEPKH-SGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVKKTPGHS 485 (616)
Q Consensus 410 ~pd~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s 485 (616)
.|+..+--.+..++.+..+ ..+++.+++.+++..|.. -.....|+-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4555555555566665553 557888888888777753 333457788888889999998888888652
Q ss_pred eEEeCCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 007134 486 LVELGNRVFEFFMGDRSHPQTEEIHAMLAEITKKLKLEGYV 526 (616)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 526 (616)
.|...++...-..+.++|.+.|++
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 233345555555556777777774
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.43 Score=44.95 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=63.5
Q ss_pred HHHHHHHHHhHHhhCCCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHhC-CCCCc--HHHHHHHHHHHHH-cCCc
Q 007134 362 DEGFSYFKRMKDEYGIMPK---IEHFGCMVDLLGRA-----GLVKQAYEYIQNM-LMPPN--AVIWRTLLGACTI-HGHS 429 (616)
Q Consensus 362 ~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~pd--~~~~~~ll~a~~~-~g~~ 429 (616)
..|...+++.. .+.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34444444443 34455 44667777777773 7888888888766 35562 5666666776666 4888
Q ss_pred HHHHHHHHHHHhcCCCC-CCchhhhhHHhHhcccchHHHHHHHHH
Q 007134 430 AIAEIARSTLLQLEPKH-SGDYVLLSNLYAYEQRWLNVQEVRRTM 473 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m 473 (616)
+++.+.+++++...|.. |.. .+. ..++-++|..+++++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~--~la----n~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHN--KLL----VILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSC--HHH----HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCCh--hHH----HHHHHHHHHHHHHHh
Confidence 88888888888877763 432 233 334445666665544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.38 E-value=0.38 Score=37.71 Aligned_cols=64 Identities=9% Similarity=-0.104 Sum_probs=52.5
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC-------CCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLE-------PKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+..-...|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44455678889999999999999999997643 22345577899999999999999999998865
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=91.05 E-value=5.6 Score=32.54 Aligned_cols=82 Identities=11% Similarity=0.008 Sum_probs=51.2
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007134 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 370 (616)
+||++......|-.+. .+....+.-+..+...|+-++-.+++.++.. +.+|+......+..||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555555554442 2334445556667777777777777777533 2456666667777777777777777777777
Q ss_pred hHHh
Q 007134 371 MKDE 374 (616)
Q Consensus 371 m~~~ 374 (616)
+.++
T Consensus 151 AC~k 154 (172)
T 1wy6_A 151 ACKK 154 (172)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7664
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.86 Score=49.44 Aligned_cols=54 Identities=11% Similarity=-0.014 Sum_probs=48.9
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
.-|...|+++.|+.+.+++...-|.+..++..|+.+|...|+|+.|.-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446778999999999999999999999999999999999999999999998884
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.87 E-value=0.0034 Score=63.00 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=117.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE 256 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 256 (616)
.+.+|+.|..++.+.|++.+|.+.| +...|...|..+|.+..+.|.+++-++.+.-.++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 3456777777777777777777665 333455667777777777888877777665555443223 233456777777
Q ss_pred cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhh
Q 007134 257 LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK------------------------RNAVS 312 (616)
Q Consensus 257 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~ 312 (616)
.+++.+-.++. -.|+..-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 77765543332 135555556667777777777777777766541 26788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCC-CChhhHHHHHHHH
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM-PKIEHFGCMVDLL 391 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~ 391 (616)
|..+-.+|...+.+.-|.-.--.++- .||. ...++..|...|.+++-+.+++.-. |.+ .....++-|.-.|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaILY 273 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILY 273 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHHHH
Confidence 99998899888877666544333331 2221 1223444556666666655555443 222 2244455444444
Q ss_pred Hh
Q 007134 392 GR 393 (616)
Q Consensus 392 ~~ 393 (616)
++
T Consensus 274 sK 275 (624)
T 3lvg_A 274 SK 275 (624)
T ss_dssp HS
T ss_pred Hh
Confidence 43
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.30 E-value=13 Score=35.50 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHH----HHHHHHHCCCCCCHHHHHHHHHHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALT----LFREMASEGVEPDGYTMVSLFSACA 255 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~a~~ 255 (616)
.|.++..-|.+.+++++|.+++..- ...+.+.|+...|-+ +.+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777789999999999886542 334556677655544 3455566788888888887777765
Q ss_pred hcCchH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHc---CC
Q 007134 256 ELGALA-LGRRAHTYVW----KVG--LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVN---GF 325 (616)
Q Consensus 256 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g~ 325 (616)
....-+ .-.++...++ +.| -.-++.....+...|.+.|++.+|+..|-.-...|...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 543211 1233333343 333 2247788899999999999999999988633223455565555544443 43
Q ss_pred HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHh
Q 007134 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDE 374 (616)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 374 (616)
..++ |...-.++| -+...|++..|..+|+...+.
T Consensus 184 ~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3332 112222233 234578899998888877654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.36 E-value=1.3 Score=36.09 Aligned_cols=65 Identities=3% Similarity=-0.143 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhcCCCC-CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 411 PNAVIWRTLLGACTIHG---HSAIAEIARSTLLQLEPKH-SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 411 pd~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
|...+--.+..++.+.. +..+|+.+++.+++.+|.. -.....|+-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444334444444444 3446666676666666532 33344666677777777777777776654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.99 E-value=3.1 Score=33.65 Aligned_cols=71 Identities=14% Similarity=-0.090 Sum_probs=47.4
Q ss_pred CChhhHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 379 PKIEHFGCMVDLLGRAGLVKQ---AYEYIQNML-MP-P--NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~-~~-p--d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
++..+--.+.-++.+..+..+ ++.++++.- .. | .....-.|.-++.+.|++++|.+.++.+++.+|++..+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 555555555566666665554 666666552 22 3 12334456668899999999999999999999986543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.96 E-value=5.1 Score=33.44 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=56.5
Q ss_pred CCCChhHHHHHHHHHHhcCCc------hHHHHHHHHHHHCCCCCCcc----hHHHHHHH---HHcCCCcHHHHHHHHHHH
Q 007134 104 QDPNIFTWNTMIRGYAESANP------LLAVELYSKMHVSGIKPDTH----TYPFLLKA---ISKLADVRMGEQTHSVAI 170 (616)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~----t~~~ll~~---~~~~~~~~~a~~~~~~~~ 170 (616)
...|..+|=..+...-+.|++ ++.+++|++.... ++|+.. .|..+.-- +...+|.+.|+++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345778888888888888888 7778888877764 566532 12211111 112256777777777776
Q ss_pred HhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007134 171 RNGFESLVFVQNSLVHMYAAFGHVKDACKVFEL 203 (616)
Q Consensus 171 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 203 (616)
+..-.- ..+|......=.+.|+++.|++++..
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 552222 44454444444555555555555544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.71 E-value=3 Score=32.03 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 007134 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404 (616)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (616)
+.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ +...+|..+++ +-.-+.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq---------ElkPtl 93 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ---------ELRPTL 93 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH---------HHhhHH
Confidence 4557777778888888999999999999999999999999999999987543 44556877764 334555
Q ss_pred HhCC
Q 007134 405 QNML 408 (616)
Q Consensus 405 ~~m~ 408 (616)
+++|
T Consensus 94 ~ELG 97 (109)
T 1v54_E 94 NELG 97 (109)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 5555
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.47 E-value=21 Score=34.32 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 007134 180 VQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTL----FREMASEGVEPDGYTMVSLFSACA 255 (616)
Q Consensus 180 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 255 (616)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445666778999999999987643 23345556665554444 355566778888888777777776
Q ss_pred hcCchHH-HHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHH
Q 007134 256 ELGALAL-GRRAHTYVW----KVG--LSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKE 328 (616)
Q Consensus 256 ~~~~~~~-a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 328 (616)
....-+- =..+...++ +.| -.-|......+...|.+.|++.+|+..|-.-.++.+..+..|+.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 5553221 122333333 333 33467788889999999999999999884222222356655554444433211
Q ss_pred HHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 329 ALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 329 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
.+|.+.-.++| -|...+++..|..+|+...+
T Consensus 185 -------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 22223333333 34457888888887777654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=87.29 E-value=2 Score=35.80 Aligned_cols=54 Identities=6% Similarity=-0.160 Sum_probs=36.0
Q ss_pred cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 426 HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 426 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
.+|.++|.++|+.++++...-+..+...+..-.++|+.+.|++++......+.+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 378888888888887763333233334444456788888888888887765543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.59 E-value=23 Score=33.79 Aligned_cols=168 Identities=9% Similarity=0.076 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHH----HHHHHHCCCCCCcchHHHHHHH
Q 007134 77 DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVEL----YSKMHVSGIKPDTHTYPFLLKA 152 (616)
Q Consensus 77 ~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~~ 152 (616)
..+.++..-|.+.+ ++++|..++..- ...+.+.|+...|-++ .+...+.++++|......++..
T Consensus 34 Q~~Rtl~~Ry~~~~-~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 34 QTLRTIANRYVRSK-SYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45667778888888 899998886432 3344556776666554 4444556788888877777777
Q ss_pred HHcCCCcH-HHHHHHHHHH----HhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC---
Q 007134 153 ISKLADVR-MGEQTHSVAI----RNG--FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASN--- 222 (616)
Q Consensus 153 ~~~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~--- 222 (616)
+.....-+ .=..+...++ +.| ..-|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+...
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCC
Confidence 65533111 1233333343 333 2347788899999999999999999988533222455666555554443
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 007134 223 GKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 271 (616)
|...++ |.+.-..++. +...+++..|..+++...
T Consensus 182 ~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 182 IEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred CCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 433332 1111222232 335677777777776554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.96 E-value=25 Score=33.75 Aligned_cols=168 Identities=10% Similarity=0.026 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHH----HHHHHCCCCCCcchHHHHHHH
Q 007134 77 DLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELY----SKMHVSGIKPDTHTYPFLLKA 152 (616)
Q Consensus 77 ~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~pd~~t~~~ll~~ 152 (616)
..+.++..-|.+.+ ++++|+.++-. -...+.+.|+...|-++- +-..+.++++|..+...++..
T Consensus 36 Q~~RTi~~Ry~~~k-~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 36 QETRLVAARYSKQG-NWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-CHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35666777788888 89999887533 133455667766655554 444556788888888778777
Q ss_pred HHcCCCcHH-HHHHHHHH----HHhC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCc
Q 007134 153 ISKLADVRM-GEQTHSVA----IRNG--FESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKP 225 (616)
Q Consensus 153 ~~~~~~~~~-a~~~~~~~----~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 225 (616)
+.....-+- =..+...+ .+.| ..-|+.....+...|.+.+++.+|+.-|=.-.++....+..|+.-+.+.+..
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~ 183 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDES 183 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCG
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCC
Confidence 766553221 12233333 3334 3446778888889999999999999888432222235665665555554432
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 007134 226 NEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVW 271 (616)
Q Consensus 226 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 271 (616)
.++ |.+.-..+|. |...+++..|..+++...
T Consensus 184 ~e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 184 HTA--------------PLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GGH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred ccH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 222 2222223333 344566666766655443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.82 E-value=9.7 Score=29.09 Aligned_cols=87 Identities=15% Similarity=0.025 Sum_probs=63.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 007134 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 157 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (616)
...++|.-|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-+|-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 456777777777776653 444444555678889999999999999999999999888664 5677777777777777
Q ss_pred HCCCCCCHHHHH
Q 007134 237 SEGVEPDGYTMV 248 (616)
Q Consensus 237 ~~g~~p~~~t~~ 248 (616)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 45444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.05 E-value=9.2 Score=29.17 Aligned_cols=87 Identities=10% Similarity=-0.055 Sum_probs=64.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 007134 157 ADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMA 236 (616)
Q Consensus 157 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 236 (616)
...++|.-|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456777777777776653 44444455567888999999999999999999999988765 47788888888777887
Q ss_pred HCCCCCCHHHHH
Q 007134 237 SEGVEPDGYTMV 248 (616)
Q Consensus 237 ~~g~~p~~~t~~ 248 (616)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45544443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.52 E-value=8.9 Score=41.60 Aligned_cols=124 Identities=8% Similarity=-0.014 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHhhCCCCCh--hH--HHHHHHHHHhcCC-chHHHHHHHHHHHC------CCCCCcc---
Q 007134 80 KYLIYAIVSLSFP-MSYAHNIFSHVQDPNI--FT--WNTMIRGYAESAN-PLLAVELYSKMHVS------GIKPDTH--- 144 (616)
Q Consensus 80 ~~li~~y~~~~~~-~~~A~~~f~~m~~~~~--~~--~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~pd~~--- 144 (616)
..|+..+.-.+ + .+.|..+|+++...+. .+ ..++|..+.+.++ --+|++++.+.++. ...+...
T Consensus 252 ~~Ll~~~~~t~-~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 252 YSLKSFIAITP-SLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHTCG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHcccc-cHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444455 4 5779989987764332 22 2233333333332 23566666555421 1222211
Q ss_pred --------hHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 145 --------TYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 145 --------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
.+..-.+.|...|+++.|+++-+.++..- +.+-.+|..|...|.+.|+++.|+-.++.+|
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11122345667899999999999988874 5667789999999999999999999999887
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.62 E-value=14 Score=28.16 Aligned_cols=87 Identities=10% Similarity=0.030 Sum_probs=62.7
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007134 259 ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEI 338 (616)
Q Consensus 259 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 338 (616)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 56777777777766653 33333333445677899999999999999999999988765 467888888888878887
Q ss_pred CCCcCCHHHHHH
Q 007134 339 GGFVPGEVTFVG 350 (616)
Q Consensus 339 ~g~~p~~~t~~~ 350 (616)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.08 E-value=6.5 Score=31.94 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 007134 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404 (616)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (616)
+.-+..+-++.+....+.|+.....+.|.+|.+.+++..|..+|+.++.+. .+....|..+++ +-.-+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq---------ElkPtl 136 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ---------ELRPTL 136 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH---------HHhhHH
Confidence 344666777777778899999999999999999999999999999998754 344667877764 445556
Q ss_pred HhCCC
Q 007134 405 QNMLM 409 (616)
Q Consensus 405 ~~m~~ 409 (616)
+++|+
T Consensus 137 ~ELGI 141 (152)
T 2y69_E 137 NELGI 141 (152)
T ss_dssp HHHTC
T ss_pred HHhCC
Confidence 66653
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.03 E-value=15 Score=28.06 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=62.8
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007134 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 337 (616)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.+.|-++-. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356777777777766653 33333333445677899999999999999999999988765 46688888888887887
Q ss_pred hCCCcCCHHHHHH
Q 007134 338 IGGFVPGEVTFVG 350 (616)
Q Consensus 338 ~~g~~p~~~t~~~ 350 (616)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.51 E-value=57 Score=36.28 Aligned_cols=295 Identities=9% Similarity=0.028 Sum_probs=145.7
Q ss_pred HHHHHHHHhcCCchHH-HHHH-HHHHHCCCCCCcchHHHH-HHHHHcCCCcHHHHHHHHHHHHhC--CCCcHHHHHHHHH
Q 007134 112 NTMIRGYAESANPLLA-VELY-SKMHVSGIKPDTHTYPFL-LKAISKLADVRMGEQTHSVAIRNG--FESLVFVQNSLVH 186 (616)
Q Consensus 112 ~~li~~~~~~g~~~~A-~~l~-~~m~~~g~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~ 186 (616)
.++..++...|-..+. +... .++-+. + +..-+.++ --+....|+.+++..++...+..+ -.+.......+.-
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL 419 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL 419 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence 3567788888865443 2222 222221 1 11122222 224556788888877776554321 1222334444555
Q ss_pred HHHhcCCHHHHHHHHhhcCC-CC----------hhHHHHHHHHHHhCCCc-cHHHHHHHHHHHCCCCCCHHHHH--HHHH
Q 007134 187 MYAAFGHVKDACKVFELMSE-RD----------LVAWNSVINGFASNGKP-NEALTLFREMASEGVEPDGYTMV--SLFS 252 (616)
Q Consensus 187 ~y~~~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~--~ll~ 252 (616)
+...+|.-+++..++..... .+ +..-.++.-|++-.|.- +++.+.+..+....- +...... ++..
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGl 498 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGL 498 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Confidence 56666665566665554322 22 11122333344444432 466777777665321 1111112 2222
Q ss_pred HHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHH--hcCCHHHHHHHHHhcCC-CChh-hHH---HHHHHHHHcCC
Q 007134 253 ACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYS--KCGIIIAAQRVFREMRK-RNAV-SWS---TLVVGLAVNGF 325 (616)
Q Consensus 253 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~--~~g~~~~A~~~f~~m~~-~~~~-~~~---~li~~~~~~g~ 325 (616)
.+...|+.+....++..+.+.. +..+...+.-+.+ -.|+.+.+..+.+.+.. .|.. -|. ++..+|+..|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 3345567677777777666532 2233333333333 56776666666666542 2322 233 23445667778
Q ss_pred HHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCH-HHHHHHH
Q 007134 326 GKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV-KQAYEYI 404 (616)
Q Consensus 326 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~ 404 (616)
.....++++.+.... ..+......+.-++...|+.+.+.++++.+.+ ...|.+..-.++.-+....|.. .+|.+++
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 766666888777642 12222222222234445666666777766654 2345555444555455545443 5677777
Q ss_pred HhCCCCCcHHHH
Q 007134 405 QNMLMPPNAVIW 416 (616)
Q Consensus 405 ~~m~~~pd~~~~ 416 (616)
..+...+|..+-
T Consensus 653 ~~L~~D~d~~Vr 664 (963)
T 4ady_A 653 DPLTKDPVDFVR 664 (963)
T ss_dssp HHHHTCSSHHHH
T ss_pred HHHccCCCHHHH
Confidence 777545554433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.49 E-value=48 Score=33.47 Aligned_cols=185 Identities=12% Similarity=0.079 Sum_probs=118.1
Q ss_pred CCccHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH-hCCCCchhH--HHHHHHHHHhcCC
Q 007134 223 GKPNEALTLFREMASE-----GVEPDGYTMVSLFSACAELGALALGRRAHTYVWK-VGLSDNVNV--NNALLDFYSKCGI 294 (616)
Q Consensus 223 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~--~~~li~~y~~~g~ 294 (616)
|++++|++.+..+.+. +..........++..|...++++.....+..+.+ +|......+ .+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788999888776542 2444566788899999999999988877766654 343222211 1222233333333
Q ss_pred HH--HHHHHHHhcCCC-C---------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcCCH---HHHHHHHHHHhc
Q 007134 295 II--AAQRVFREMRKR-N---------AVSWSTLVVGLAVNGFGKEALELFKEMEIG--GFVPGE---VTFVGVLYACSH 357 (616)
Q Consensus 295 ~~--~A~~~f~~m~~~-~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~---~t~~~ll~a~~~ 357 (616)
.+ .-..+.+..... + ......|...|...|++.+|.+++.++... |..+.. ..+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 223333333211 1 112345778888999999999999998743 332221 345666778899
Q ss_pred CCChHHHHHHHHHhHHh-hCCCC--C--hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 007134 358 CGMVDEGFSYFKRMKDE-YGIMP--K--IEHFGCMVDLLGRAGLVKQAYEYIQNM 407 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~-~~~~p--~--~~~~~~li~~~~~~g~~~~A~~~~~~m 407 (616)
.+++..|..++..+... ....+ + ...|.+++..+...+++.+|...|.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999987532 12222 2 345778888888999999998877664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 616 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.99 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.96 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.87 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.82 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.35 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.3 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.28 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.23 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.12 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.1 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.98 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.96 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.93 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.89 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.83 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.82 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.8 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.73 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.72 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.68 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.37 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.34 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.22 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.22 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.22 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.17 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.14 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.96 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.78 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.47 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.31 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.73 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.6 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.99 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.0 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 91.71 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.95 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.86 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.35 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.5e-20 Score=188.28 Aligned_cols=371 Identities=11% Similarity=0.036 Sum_probs=278.8
Q ss_pred HHHHhCCCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcH
Q 007134 84 YAIVSLSFPMSYAHNIFSHVQD--P-NIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160 (616)
Q Consensus 84 ~~y~~~~~~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 160 (616)
..+.+.| ++++|.+.|+++.+ | ++..|..+...|.+.|++++|+..|++.++.. +-+..++..+...+...|+++
T Consensus 7 ~~~~~~G-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAG-DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 3444566 78888888776532 3 56777778888888888888888888877643 123456777777777888888
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 007134 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELM---SERDLVAWNSVINGFASNGKPNEALTLFREMAS 237 (616)
Q Consensus 161 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (616)
+|...+..+.+.. +.+..........+...+....+....... .......+..........+....+...+.+...
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 8888888777765 333334444444444444444443333322 233445556666667777777888887777765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHH
Q 007134 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWS 314 (616)
Q Consensus 238 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~ 314 (616)
.. +-+...+..+...+...++.+.|...+....+.. +.+...+..+...|...|++++|...|+... ..+...|.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 43 3345666777777888888888888888887764 4466778888889999999999999888765 34667788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhc
Q 007134 315 TLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRA 394 (616)
Q Consensus 315 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 394 (616)
.+...+.+.|++++|++.|++..+.. +-+..++..+...+...|++++|...++.... ..+.+...+..+...+.+.
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHC
Confidence 88889999999999999999988743 22456788888899999999999999998876 4455678888999999999
Q ss_pred CCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 395 GLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 395 g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++.+|..|+.+|.+.|+
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999886 4667 567889999999999999999999999999999999999999999988774
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2e-19 Score=181.58 Aligned_cols=354 Identities=12% Similarity=0.067 Sum_probs=292.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcC
Q 007134 114 MIRGYAESANPLLAVELYSKMHVSGIKPD-THTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFG 192 (616)
Q Consensus 114 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 192 (616)
+...+.+.|++++|++.|+++.+.. |+ ...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 3456678899999999999998853 54 5577888888999999999999999999875 556788999999999999
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 007134 193 HVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269 (616)
Q Consensus 193 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 269 (616)
++++|.+.+....+ .+...+..........+....+............ ................+....+......
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHH
Confidence 99999999988754 3445556666666677777777777776665543 3334444555566677778888887777
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHH
Q 007134 270 VWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEV 346 (616)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 346 (616)
..... +.+...+..+...+...|++++|...++... ..+..+|..+...+...|++++|+..+++....+ ..+..
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 77654 4567788888999999999999999998764 3467789999999999999999999999998754 34556
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC--CCCcHHHHHHHHHHHH
Q 007134 347 TFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML--MPPNAVIWRTLLGACT 424 (616)
Q Consensus 347 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ll~a~~ 424 (616)
.+..+...+.+.|++++|...|+++.+ -.+.+...|..+...+.+.|++++|.+.++... .+.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 777888899999999999999999876 233447889999999999999999999998763 3447788999999999
Q ss_pred HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 425 IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 425 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..|++++|+..+++++++.|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.1e-12 Score=128.52 Aligned_cols=249 Identities=12% Similarity=0.003 Sum_probs=154.4
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCch
Q 007134 184 LVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGAL 260 (616)
Q Consensus 184 Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 260 (616)
....|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|.+..+.. +-+...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 34445566666666666665532 234456666666666666666666666655432 12344455555555556666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007134 261 ALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG 340 (616)
Q Consensus 261 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 340 (616)
++|.+.+..+...... ............. ..+.......+..+...+...+|.+.|.+.....
T Consensus 104 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 104 RQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 6666555555443211 0000000000000 0011111112233445566788888888877632
Q ss_pred -CcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHH
Q 007134 341 -FVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWR 417 (616)
Q Consensus 341 -~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~ 417 (616)
-.++...+..+...+...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...| +..+|.
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 244 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY 244 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence 2345567778888899999999999999998763 2234778899999999999999999999876 3556 577899
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhh
Q 007134 418 TLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL 452 (616)
Q Consensus 418 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 452 (616)
.+..+|...|++++|+..++++++++|++...+..
T Consensus 245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 279 (323)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence 99999999999999999999999999987665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.8e-13 Score=130.54 Aligned_cols=240 Identities=14% Similarity=0.005 Sum_probs=168.8
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007134 214 SVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG 293 (616)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 293 (616)
.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|+++.|...+..+++.. +.+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45566778888888888888887753 2345667777777777777777777777777654 335566666666777777
Q ss_pred CHHHHHHHHHhcCCCChh---hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007134 294 IIIAAQRVFREMRKRNAV---SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370 (616)
Q Consensus 294 ~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 370 (616)
++++|.+.++.....+.. .+........ ..+.......+..+...+...++...|..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 777777766655322111 0000000000 00000011111222344567788888888
Q ss_pred hHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 371 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
..+...-.++...+..+...+.+.|++++|+..+++. ...| +..+|..+...+...|++++|...++++++++|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7764344456778889999999999999999999886 3455 5789999999999999999999999999999999999
Q ss_pred chhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 449 DYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 449 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
++..++.+|.+.|++++|.+.+++..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998876
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=1.8e-08 Score=98.39 Aligned_cols=193 Identities=16% Similarity=0.015 Sum_probs=110.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC-------CC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcCCHHH
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMR-------KR----NAVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVPGEVT 347 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~-------~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t 347 (616)
..+...|...|++..|...+.... .+ ....+..+...+...|+++.+...+.+.... +......+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 334445555555555555554332 11 1123344555666667777777666665542 22222334
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-----cHHHH
Q 007134 348 FVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-----IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-----NAVIW 416 (616)
Q Consensus 348 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-----d~~~~ 416 (616)
+......+...+....+...+........-..+ ...+..+...+...|++++|...+++.. ..| ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 444555556667777776666655443222111 2234455566777778888877776652 111 23455
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHh------cCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQ------LEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+..++...|++++|...+++++. ..|.....+..++.+|...|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667777778888888888777752 2333345566778888888888888887776644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.00 E-value=3.9e-08 Score=94.69 Aligned_cols=187 Identities=11% Similarity=0.010 Sum_probs=147.1
Q ss_pred CchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C-hhhHHHHHHHHHHcCCHHHHHHHH
Q 007134 258 GALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKR---N-AVSWSTLVVGLAVNGFGKEALELF 333 (616)
Q Consensus 258 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~-~~~~~~li~~~~~~g~~~~A~~l~ 333 (616)
+..+.+..+++..++...+.+...+...+..+.+.|+.+.|..+|+.+... + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345778888888887655667778888889999999999999999987542 3 346889999999999999999999
Q ss_pred HHHHhCCCcCCHHHHHHHHH-HHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 007134 334 KEMEIGGFVPGEVTFVGVLY-ACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM----L 408 (616)
Q Consensus 334 ~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 408 (616)
+++.+.+... ...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9998765332 233333222 234468999999999999874 3445788999999999999999999999875 3
Q ss_pred CCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 409 MPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 409 ~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
..|+ ...|...+.--..+|+.+.+..+.+++.+..|...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 4443 46899999888999999999999999988888754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=3.1e-08 Score=96.69 Aligned_cols=162 Identities=9% Similarity=-0.064 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcCC--HHHH
Q 007134 283 NALLDFYSKCGIIIAAQRVFREMRK--------RNAVSWSTLVVGLAVNGFGKEALELFKEMEIG----GFVPG--EVTF 348 (616)
Q Consensus 283 ~~li~~y~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~ 348 (616)
..+...|...|+++.+...+..... ....++..+...+...++..++...+.+.... +..+. ...+
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 3444555556666666655554321 01223444455556666666666666554331 11111 1234
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCc-HHHHHH
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMP--KIEHFGCMVDLLGRAGLVKQAYEYIQNM-------LMPPN-AVIWRT 418 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~pd-~~~~~~ 418 (616)
..+...+...|+.+.|...++.......-.+ ....+..+...+...|++++|...+++. +..|+ ..++..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 4445566677788888777776654211111 1234455677778888888887777654 33443 357777
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHhcCC
Q 007134 419 LLGACTIHGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 419 ll~a~~~~g~~~~a~~~~~~~~~~~p 444 (616)
+...+...|++++|.+.+++++++.+
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 88888889999999999888876644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=1.1e-09 Score=107.31 Aligned_cols=228 Identities=11% Similarity=-0.079 Sum_probs=160.8
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCc--hHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGA--LALGRRAHTYVWKVGLSDNVNVN-NALLDFYSKCGIIIAA 298 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~~~g~~~~A 298 (616)
.|++++|+.++++..+.. +-+...+.....++...+. .+++...+..+.+.. +.+...+ ......+...|..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 344667777777776643 2244455555555555553 667777777777764 3334443 3445677778899999
Q ss_pred HHHHHhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhh
Q 007134 299 QRVFREMRKR---NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEY 375 (616)
Q Consensus 299 ~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 375 (616)
...++..... +..+|+.+...+.+.|++++|...+++.... .|+.. .+...+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~-- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL-- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--
Confidence 9999887753 6678888888999999888877666554442 23222 222334455666777777777765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhh
Q 007134 376 GIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453 (616)
Q Consensus 376 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 453 (616)
..+++...+..+...+...|+.++|.+.+.+. ...| +..+|..+..++...|++++|...++++++++|.....|..|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 34455666777888888999999999999776 4666 457888999999999999999999999999999877777777
Q ss_pred hHHhH
Q 007134 454 SNLYA 458 (616)
Q Consensus 454 ~~~y~ 458 (616)
...+.
T Consensus 317 ~~~~~ 321 (334)
T d1dcea1 317 RSKFL 321 (334)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=3e-08 Score=95.76 Aligned_cols=212 Identities=13% Similarity=0.119 Sum_probs=118.7
Q ss_pred HhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHH
Q 007134 255 AELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCG-IIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEAL 330 (616)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 330 (616)
.+.+..++|.++++.+++.. +.+...|+....++.+.| ++++|.+.++... ..+..+|+.+...+...|++++|+
T Consensus 54 ~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl 132 (315)
T d2h6fa1 54 QRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL 132 (315)
T ss_dssp HHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHH
Confidence 33344444444444444432 333444444444444443 3555555555443 234556666666666666666666
Q ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCC------HHHHHHHH
Q 007134 331 ELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGL------VKQAYEYI 404 (616)
Q Consensus 331 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~ 404 (616)
+.++++.+.. +-+...|..+...+.+.|++++|.+.|+.+.+. -+.+...|+.+...+.+.+. +++|++.+
T Consensus 133 ~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~ 209 (315)
T d2h6fa1 133 EFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 209 (315)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhhhhHHhHHHH
Confidence 6666666532 123455666666666666666666666666542 12235556555555555444 56777777
Q ss_pred HhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCch--hhhhHHhHhc--ccchHHHHHHH
Q 007134 405 QNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDY--VLLSNLYAYE--QRWLNVQEVRR 471 (616)
Q Consensus 405 ~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~--~~l~~~y~~~--g~~~~a~~~~~ 471 (616)
.+. ...| |...|..+...+.. ...+++...+++++++.|+....+ ..++.+|... +..+.+...++
T Consensus 210 ~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 210 LEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 654 3455 67778777666544 446788888888888888754443 3566666443 34344444333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.2e-08 Score=95.32 Aligned_cols=219 Identities=11% Similarity=-0.019 Sum_probs=131.4
Q ss_pred ccHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007134 225 PNEALTLFREMASEGV-EP--DGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301 (616)
Q Consensus 225 ~~~A~~~~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (616)
.+.++.-+++...... .+ ...++..+..++.+.|++++|...|...++.. +.+..+++.+..+|.+.|++++|.+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3445555555544321 11 12355555666777777777777777777654 45667777788888888888888888
Q ss_pred HHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCC
Q 007134 302 FREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIM 378 (616)
Q Consensus 302 f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 378 (616)
|+++.+ .+..+|..+...|...|++++|++.|++..+.. +.+......+..+..+.+..+....+...... ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence 877653 356678888888888888888888888887643 12333333333344445555555444444433 22
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHh-CC----CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 379 PKIEHFGCMVDLLGRAGLVKQAYEYIQN-ML----MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~----~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
++...++ ++..+............... .. ..|+ ..+|..+...+...|++++|...+++++..+|++...
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 2222222 22222222222222222111 11 2232 3577778889999999999999999999999986433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.3e-07 Score=91.07 Aligned_cols=186 Identities=9% Similarity=0.025 Sum_probs=81.8
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007134 213 NSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELG-ALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK 291 (616)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 291 (616)
+.+...+.+.+.+++|+++++++++.+ +-+...|.....++...+ ++++|...++.+++.. +-+..+|+.+...+.+
T Consensus 47 ~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 47 DYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHh
Confidence 333344444444444444444444431 112223333333333333 2444444444444432 2334444444555555
Q ss_pred cCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCC------hH
Q 007134 292 CGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGM------VD 362 (616)
Q Consensus 292 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 362 (616)
.|++++|.+.|+.+.+ .+...|+.+...+.+.|++++|++.|+++.+.. +-+...|+.+...+.+.+. ++
T Consensus 125 l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~ 203 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLE 203 (315)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhH
Confidence 5555555555554432 244555555555555555555555555555532 1123334333333332222 44
Q ss_pred HHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 007134 363 EGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI 404 (616)
Q Consensus 363 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 404 (616)
+|...+..+.+. .+.+...|..+...+...| .+++.+.+
T Consensus 204 ~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~ 242 (315)
T d2h6fa1 204 REVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLL 242 (315)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHH
T ss_pred HhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHH
Confidence 555555555431 1223445555544443332 34444444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=4.6e-07 Score=86.96 Aligned_cols=179 Identities=12% Similarity=0.046 Sum_probs=76.9
Q ss_pred HHHHHHHHhhcCC----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 007134 194 VKDACKVFELMSE----RDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTY 269 (616)
Q Consensus 194 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 269 (616)
.++|..+|++..+ .+...|...+..+.+.|+.++|..+|+++...........|...+..+.+.+..+.|++++..
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444555544321 233345555555555555555555555554432222223444445555555555555555555
Q ss_pred HHHhCCCCchhHHHHHHHH-HHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CcCC
Q 007134 270 VWKVGLSDNVNVNNALLDF-YSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGG-FVPG 344 (616)
Q Consensus 270 ~~~~g~~~~~~~~~~li~~-y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 344 (616)
+.+.+ +.+...+...... +...|+.+.|..+|+.+.+ .+...|...+..+...|+.++|..+|++..... ..|+
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 54433 1122222222211 2223444445555444432 133444444444444555555555555444321 2222
Q ss_pred --HHHHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007134 345 --EVTFVGVLYACSHCGMVDEGFSYFKRMKD 373 (616)
Q Consensus 345 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 373 (616)
...|...+.--...|+.+.+..+++++.+
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12333333333344555555555544444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=1.7e-08 Score=94.29 Aligned_cols=212 Identities=10% Similarity=-0.059 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHHhCC-CC--chhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhhHHHHHHHHHHcCCHHHHHHHH
Q 007134 260 LALGRRAHTYVWKVGL-SD--NVNVNNALLDFYSKCGIIIAAQRVFREMR---KRNAVSWSTLVVGLAVNGFGKEALELF 333 (616)
Q Consensus 260 ~~~a~~~~~~~~~~g~-~~--~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 333 (616)
.+.+..-++++..... .+ ...++..+..+|.+.|++++|.+.|++.. ..++.+|+.+..+|.+.|++++|++.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 3444445555554321 11 24567778899999999999999999875 347889999999999999999999999
Q ss_pred HHHHhCCCcCC-HHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC
Q 007134 334 KEMEIGGFVPG-EVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP 411 (616)
Q Consensus 334 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 411 (616)
++..+. .|+ ..++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+..... ..+
T Consensus 95 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 95 DSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 999984 343 467888888999999999999999999863 22334444444455556665555544443331 122
Q ss_pred cHHHHHHHHHHHH----HcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 412 NAVIWRTLLGACT----IHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 412 d~~~~~~ll~a~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
+...+.. +..+. ..+..+.+...+.......|....+|..++.+|...|++++|.+.+++....
T Consensus 171 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 171 EQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2112221 11111 1122333333333334455655667888999999999999999999988754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.63 E-value=6.6e-07 Score=86.86 Aligned_cols=243 Identities=9% Similarity=-0.015 Sum_probs=150.6
Q ss_pred CHHHHHHHHhhCC--CC-ChhHHHHHHHHH----------HhcCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHHcCC
Q 007134 92 PMSYAHNIFSHVQ--DP-NIFTWNTMIRGY----------AESANPLLAVELYSKMHVSGIKPD-THTYPFLLKAISKLA 157 (616)
Q Consensus 92 ~~~~A~~~f~~m~--~~-~~~~~~~li~~~----------~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~ 157 (616)
..++|+.+++... .| +...|+..-..+ ...|++++|+.+|+...+.. |+ ...+.....++...+
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhc
Confidence 3456666666443 23 233454332222 22344678888888887743 43 334555555555544
Q ss_pred --CcHHHHHHHHHHHHhCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHH
Q 007134 158 --DVRMGEQTHSVAIRNGFESLVFVQ-NSLVHMYAAFGHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTL 231 (616)
Q Consensus 158 --~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 231 (616)
+.+.+...+..+++.. +++...+ ..+...+...|..++|+..++...+ .+..+|+.+...+.+.|++++|...
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4678888888888774 3344444 3455677778899999999988765 3567888888888898888887666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-
Q 007134 232 FREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNA- 310 (616)
Q Consensus 232 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~- 310 (616)
+.+.... .|+. ......+...+..+++...+....... +++...+..+...+...|+.++|...|.+..+.++
T Consensus 201 ~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 201 GRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp CSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 5544332 1221 122333455566666666666665543 34445555666666777777777777777666543
Q ss_pred --hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCH
Q 007134 311 --VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGE 345 (616)
Q Consensus 311 --~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 345 (616)
.+|..+...|...|+.++|++.|++..+ +.|+.
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~ 309 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMR 309 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCccc
Confidence 4555666677777777777777777766 45543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=2.7e-07 Score=82.22 Aligned_cols=116 Identities=7% Similarity=-0.206 Sum_probs=78.8
Q ss_pred CCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHH
Q 007134 343 PGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLL 420 (616)
Q Consensus 343 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll 420 (616)
|+...+......+.+.|++++|+..|+.+.+. -+.+...|..+..+|.+.|++++|+..|++. .+.| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 56666666777777777777777777776652 2334666777777777777777777777665 3556 456777777
Q ss_pred HHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhc
Q 007134 421 GACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYE 460 (616)
Q Consensus 421 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 460 (616)
.++...|++++|...++++++++|++...+...+..+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~ 119 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 7777777777777777777777776555555444444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=1e-06 Score=78.25 Aligned_cols=94 Identities=10% Similarity=-0.064 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh
Q 007134 380 KIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457 (616)
Q Consensus 380 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 457 (616)
+..........|.+.|++++|+..|++. ...| +..+|..+..+|...|++++|+..++++++++|+++.+|..++.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3333334444455555555555555443 2233 3444555555555555555555555555555555555555555555
Q ss_pred HhcccchHHHHHHHHH
Q 007134 458 AYEQRWLNVQEVRRTM 473 (616)
Q Consensus 458 ~~~g~~~~a~~~~~~m 473 (616)
.+.|++++|...+++.
T Consensus 83 ~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 83 LEMESYDEAIANLQRA 98 (201)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5555555555555444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=9.7e-07 Score=70.94 Aligned_cols=102 Identities=13% Similarity=0.049 Sum_probs=62.1
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~ 430 (616)
..+.+.|++++|...|+...+. -+.+...|..+..+|.+.|++++|+..+++.. +.| +...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3455566666666666666542 22335566666666666666666666665552 333 5566666666677777777
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 431 IAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
+|+..++++++++|+++..+..+.++
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 77777777777777665555444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=6.3e-06 Score=72.53 Aligned_cols=140 Identities=8% Similarity=-0.091 Sum_probs=96.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHH
Q 007134 286 LDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGF 365 (616)
Q Consensus 286 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 365 (616)
...+...|+++.|.+.|+++..++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3456778888888888888888888888888888888888888888888887743 223466777777888888888888
Q ss_pred HHHHHhHHhhCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcC
Q 007134 366 SYFKRMKDEYGIMPKIE-HFGCMVDLLGRAGLVKQAYEYIQNMLMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLE 443 (616)
Q Consensus 366 ~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 443 (616)
..|+..... .+++.. .|. ..| +..+++ ..++..+..++...|++++|.+.+++++++.
T Consensus 91 ~~~~kAl~~--~~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHT--TTTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh--CccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888777642 112110 000 000 011122 2455667777888888888888888888888
Q ss_pred CCC
Q 007134 444 PKH 446 (616)
Q Consensus 444 p~~ 446 (616)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 763
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=7.9e-07 Score=71.49 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=82.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccch
Q 007134 387 MVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWL 464 (616)
Q Consensus 387 li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 464 (616)
-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456788999999999999887 3556 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC
Q 007134 465 NVQEVRRTMVKE 476 (616)
Q Consensus 465 ~a~~~~~~m~~~ 476 (616)
+|...+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=3.3e-06 Score=79.97 Aligned_cols=189 Identities=9% Similarity=-0.035 Sum_probs=123.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-cCCHHHHHH
Q 007134 285 LLDFYSKCGIIIAAQRVFREMRK-----RN----AVSWSTLVVGLAVNGFGKEALELFKEMEIG----GF-VPGEVTFVG 350 (616)
Q Consensus 285 li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~ 350 (616)
...+|...|++++|.+.|.+..+ .+ ..+|+.+..+|.+.|++++|++.+++..+. |. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 35567778888888887776542 12 346788888888899999998888876542 11 111345556
Q ss_pred HHHHHh-cCCChHHHHHHHHHhHHhhCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-------cH-HHH
Q 007134 351 VLYACS-HCGMVDEGFSYFKRMKDEYGIMPK----IEHFGCMVDLLGRAGLVKQAYEYIQNML-MPP-------NA-VIW 416 (616)
Q Consensus 351 ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-------d~-~~~ 416 (616)
+...+. ..|++++|...++...+-+....+ ..++..+...|.+.|++++|.+.|++.. ..| .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 469999999999887643221111 4457788899999999999999998762 111 11 233
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc--h---hhhhHHhHh--cccchHHHHHHHHH
Q 007134 417 RTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD--Y---VLLSNLYAY--EQRWLNVQEVRRTM 473 (616)
Q Consensus 417 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~--~---~~l~~~y~~--~g~~~~a~~~~~~m 473 (616)
...+..+...|+++.|...+++..+++|..+.+ + ..++.+|.. .+.+++|.+.++.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445556778899999999999999998874433 2 234445543 34677888777654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=6e-07 Score=71.54 Aligned_cols=89 Identities=16% Similarity=0.025 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhccc
Q 007134 385 GCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQR 462 (616)
Q Consensus 385 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 462 (616)
-.+...+.+.|++++|...|++. ...| +..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34566788999999999999887 3566 678999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHH
Q 007134 463 WLNVQEVRRTM 473 (616)
Q Consensus 463 ~~~a~~~~~~m 473 (616)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=1.5e-05 Score=69.99 Aligned_cols=142 Identities=10% Similarity=-0.120 Sum_probs=92.2
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHH
Q 007134 185 VHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGR 264 (616)
Q Consensus 185 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 264 (616)
...+...|+++.|.+.|+++..++..+|..+...|...|++++|++.|++.++.+ +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4456778888888888888888888888888888888888888888888887754 345667777777778888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcC
Q 007134 265 RAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVP 343 (616)
Q Consensus 265 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 343 (616)
..++..++.........+..+ +....+ ....++..+..++.+.|++++|.+.|.+.......|
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~----~~~~~~------------~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKIL----GLQFKL------------FACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGG----TBCCEE------------EHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHhCccCchHHHHHh----hhhccc------------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 877777653211100000000 000000 011234455666777777777777777776644444
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3.5e-06 Score=71.74 Aligned_cols=116 Identities=6% Similarity=-0.045 Sum_probs=91.3
Q ss_pred HHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCc
Q 007134 352 LYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHS 429 (616)
Q Consensus 352 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~ 429 (616)
...+.+.|++++|...|+.+.+. -+.+...|..+...|.+.|++++|.+.|++. ...| +..+|..+..++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 44567888888888888888763 2334778888889999999999999999877 3556 568999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhhHHh--HhcccchHHHHH
Q 007134 430 AIAEIARSTLLQLEPKHSGDYVLLSNLY--AYEQRWLNVQEV 469 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y--~~~g~~~~a~~~ 469 (616)
++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999887776666554 334456666544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=1.5e-05 Score=75.29 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHC----CCCCC-cchHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 007134 113 TMIRGYAESANPLLAVELYSKMHVS----GIKPD-THTYPFLLKAISKLADVRMGEQTHSVAIR 171 (616)
Q Consensus 113 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 171 (616)
.....|...|++++|++.|.+.... +-+++ ..+|..+...+.+.|++++|.+.+..+++
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 3455666777777777777766542 11111 12455555555555666665555555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=4.2e-06 Score=71.24 Aligned_cols=91 Identities=14% Similarity=0.048 Sum_probs=82.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 386 CMVDLLGRAGLVKQAYEYIQNML-MPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 386 ~li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
.....|.+.|++++|+..|++.- ..| +...|..+...+...|++++|...++++++++|++..++..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34567889999999999998873 556 6789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhC
Q 007134 464 LNVQEVRRTMVKE 476 (616)
Q Consensus 464 ~~a~~~~~~m~~~ 476 (616)
++|.+.+++..+.
T Consensus 95 ~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 95 RAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988763
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=4.8e-06 Score=67.08 Aligned_cols=106 Identities=14% Similarity=-0.087 Sum_probs=80.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHhCC-CCCcH---HHHHHHHH
Q 007134 349 VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLV---KQAYEYIQNML-MPPNA---VIWRTLLG 421 (616)
Q Consensus 349 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~-~~pd~---~~~~~ll~ 421 (616)
..+++.+...+++++|.+.|+.... --+.+..++..+..++.+.++. ++|+.++++.- ..|+. .+|..|..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3466777778888899988888876 2334577888888888775554 56888898863 44433 37888999
Q ss_pred HHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHH
Q 007134 422 ACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNL 456 (616)
Q Consensus 422 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 456 (616)
+|...|++++|+..++++++++|++..+...+..+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999977655444433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.5e-05 Score=68.48 Aligned_cols=133 Identities=14% Similarity=-0.029 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHH
Q 007134 312 SWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLL 391 (616)
Q Consensus 312 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 391 (616)
.+......+.+.|++++|+..|++.+..- |.. .+..+.-......+. ...|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 44555667788888888888888776521 110 000001111111111 23577788899
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHH
Q 007134 392 GRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNV 466 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 466 (616)
.+.|++++|+..+++. ...| ++.+|..+..++...|++++|+..++++++++|+++.....+..++.+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999776 3566 7889999999999999999999999999999999998888888887766555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.10 E-value=0.00037 Score=64.15 Aligned_cols=227 Identities=11% Similarity=-0.036 Sum_probs=124.6
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHhCCCCchhHHH
Q 007134 208 DLVAWNSVINGFASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAE----LGALALGRRAHTYVWKVGLSDNVNVNN 283 (616)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 283 (616)
|+..+..|...+.+.+++++|++.|++..+.| |...+..+...+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34456666666667777777777777776655 33333334433333 234444444444444433
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHH--Hhc
Q 007134 284 ALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLVVGLAV----NGFGKEALELFKEMEIGGFVPGEVTFVGVLYA--CSH 357 (616)
Q Consensus 284 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~ 357 (616)
+...+..+...+.. .++.+.|...+++....|.......+ ..... ...
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~ 122 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVV 122 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcc
Confidence 22222222222222 23455666666665554422211111 11111 112
Q ss_pred CCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCc
Q 007134 358 CGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVKQAYEYIQNMLMPPNAVIWRTLLGACTI----HGHS 429 (616)
Q Consensus 358 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~ 429 (616)
......+...+...... .+...+..|...|.. ..+...+...++...-..+......|...+.. ..++
T Consensus 123 ~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 34455555555554432 445555666666554 34555666666554323355555556555544 4678
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhhhHHhHh----cccchHHHHHHHHHhhCCC
Q 007134 430 AIAEIARSTLLQLEPKHSGDYVLLSNLYAY----EQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 430 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 478 (616)
+.|...++++.+.+ ++.++..|+.+|.+ ..+.++|.+.+++..+.|.
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 89999999987764 46677888888875 3478889999998877663
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=3.9e-05 Score=65.74 Aligned_cols=63 Identities=6% Similarity=-0.108 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 467778888999999999999999999999999999999999999999999999999998763
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.96 E-value=4.8e-05 Score=65.07 Aligned_cols=93 Identities=10% Similarity=-0.047 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh
Q 007134 382 EHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY 459 (616)
Q Consensus 382 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 459 (616)
..|+.+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.....+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888899999999999999876 3455 778999999999999999999999999999999998888888888776
Q ss_pred cccchH-HHHHHHHHh
Q 007134 460 EQRWLN-VQEVRRTMV 474 (616)
Q Consensus 460 ~g~~~~-a~~~~~~m~ 474 (616)
.+...+ ..+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 665543 445555553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.93 E-value=5.9e-05 Score=63.29 Aligned_cols=62 Identities=11% Similarity=-0.054 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.+|..+..++.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...++...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677888889999999999999999999999999999999999999999999999988765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.89 E-value=0.0057 Score=55.71 Aligned_cols=227 Identities=9% Similarity=-0.093 Sum_probs=123.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007134 177 LVFVQNSLVHMYAAFGHVKDACKVFELMSE-RDLVAWNSVINGFAS----NGKPNEALTLFREMASEGVEPDGYTMVSLF 251 (616)
Q Consensus 177 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 251 (616)
|+..+..|...+.+.|++++|.+.|++..+ .|..++..|...|.. ..+...|...+......+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 455677788888999999999999998754 467777777777776 567888888888887765 223333333
Q ss_pred HHHHh----cCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhhHHHHHHHHHH
Q 007134 252 SACAE----LGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSK----CGIIIAAQRVFREMRK-RNAVSWSTLVVGLAV 322 (616)
Q Consensus 252 ~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~ 322 (616)
..+.. ..+.+.+...+....+.|.. .....+...+.. ......|...+..... .+...+..|...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 33332 34667777777777776532 112222222221 2334444444444322 344445545444443
Q ss_pred cCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHh----cCCHH
Q 007134 323 NGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGR----AGLVK 398 (616)
Q Consensus 323 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~ 398 (616)
.. + ...+...+...++...+. .+......+...|.. ..+.+
T Consensus 155 ~~---------------~----------------~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 155 GR---------------G----------------TPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp TS---------------S----------------SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred CC---------------C----------------cccccccchhhhhccccc----cccccccchhhhcccCcccccchh
Confidence 11 0 122333333333333221 123333333333332 34566
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHH----cCCcHHHHHHHHHHHhcCC
Q 007134 399 QAYEYIQNMLMPPNAVIWRTLLGACTI----HGHSAIAEIARSTLLQLEP 444 (616)
Q Consensus 399 ~A~~~~~~m~~~pd~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p 444 (616)
+|...|++....-++..+..|...+.. ..+.++|.+.++++.+.+.
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 666666554222244455555555543 3367778888877766654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=4.8e-05 Score=65.09 Aligned_cols=64 Identities=5% Similarity=-0.122 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 412 NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 412 d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 4457777888888999999999999999999999888899999999999999999999988876
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.83 E-value=4.6e-05 Score=65.24 Aligned_cols=131 Identities=8% Similarity=-0.054 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCC-ChhhHHHHHHHH
Q 007134 313 WSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMP-KIEHFGCMVDLL 391 (616)
Q Consensus 313 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~ 391 (616)
+......+...|++++|++.|.+..+. .+.. ......... . .+.| ....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~----------~~~~~~~~~------~----~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADG------A----KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHH------G----GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh----------hhhhhhHHH------H----HhChhhHHHHHHHHHHH
Confidence 445566677888888888888876541 0000 000000000 0 1112 355677888999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchH
Q 007134 392 GRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLN 465 (616)
Q Consensus 392 ~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 465 (616)
.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..++++++++|++...+..+..++.+.....+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877 4667 678999999999999999999999999999999988877777777655444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=2e-05 Score=64.09 Aligned_cols=92 Identities=10% Similarity=0.053 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhh-------hh
Q 007134 384 FGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVL-------LS 454 (616)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~ 454 (616)
+..+...+.+.|++++|++.|++. ...| +..+|..+..+|...|++++|+..++++++++|+++..+.. ++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677888999999999999776 3455 67899999999999999999999999999999988775554 55
Q ss_pred HHhHhcccchHHHHHHHHHhh
Q 007134 455 NLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 455 ~~y~~~g~~~~a~~~~~~m~~ 475 (616)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 666777899999999877643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.81 E-value=6.1e-05 Score=63.20 Aligned_cols=126 Identities=11% Similarity=-0.155 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHH
Q 007134 311 VSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDL 390 (616)
Q Consensus 311 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 390 (616)
..+......+.+.|++.+|+..|.+....- |.. ....-......... .....|+.+...
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 456667778888899999999998877521 100 00000000000011 123467788899
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHh
Q 007134 391 LGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLY 457 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 457 (616)
|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+..++++++++|+++.....+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999886 3556 7789999999999999999999999999999999877665555444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=0.015 Score=54.55 Aligned_cols=237 Identities=10% Similarity=-0.005 Sum_probs=92.0
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh
Q 007134 142 DTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGFAS 221 (616)
Q Consensus 142 d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 221 (616)
|..-...+..-|-+.|.++.|..++..+. -|..++..|.+.++++.|.+++.+.. +..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHh
Confidence 33333344444445555555555444221 12334444555555555555544332 33455555555554
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007134 222 NGKPNEALTLFREMASEGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRV 301 (616)
Q Consensus 222 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 301 (616)
.....-| .+.......+......++..|-..|..++...+++..... -..+..+++-++.+|++.+. ++-.+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HHHHHH
Confidence 4433221 1112222233334444555555555555555555544322 13344455555555555432 222233
Q ss_pred HHhcCCC-----------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007134 302 FREMRKR-----------NAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370 (616)
Q Consensus 302 f~~m~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 370 (616)
+...... ....|..++-.|.+.|++++|+.+.-+ -.++.......+..+.+.++.+...++...
T Consensus 155 l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~ 229 (336)
T d1b89a_ 155 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQF 229 (336)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence 3222111 111234444444555555555443322 112221222233444555555555444444
Q ss_pred hHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHh
Q 007134 371 MKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQN 406 (616)
Q Consensus 371 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 406 (616)
..+. .| ...+.++......-+..+..+.+++
T Consensus 230 yL~~---~p--~~i~~lL~~v~~~~d~~r~V~~~~k 260 (336)
T d1b89a_ 230 YLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSK 260 (336)
T ss_dssp HHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHc---CH--HHHHHHHHHhccCCCHHHHHHHHHh
Confidence 4331 12 2334444444444555555555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=0.0063 Score=57.28 Aligned_cols=210 Identities=10% Similarity=-0.008 Sum_probs=122.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcH
Q 007134 81 YLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVR 160 (616)
Q Consensus 81 ~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~ 160 (616)
.+.+.+-+.| .++.|..++..+. .|..++..|.+.++++.|++++.+. -+..+|..+..+|.......
T Consensus 19 ~i~~~c~~~~-lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 19 QVGDRCYDEK-MYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp -----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHH
Confidence 3445555666 7888888887665 4778888888899999988887654 24567888888887766554
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 007134 161 MGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS---ERDLVAWNSVINGFASNGKPNEALTLFREMAS 237 (616)
Q Consensus 161 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 237 (616)
.+ .+.......++.-...++..|-..|.+++...+++... ..+...++.++..|++.+ .++-++.++..
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~-- 158 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF-- 158 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--
Confidence 32 22223334455555678899999999999999998653 346667888888888864 33433333332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhhHHHHH
Q 007134 238 EGVEPDGYTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRKRNAVSWSTLV 317 (616)
Q Consensus 238 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li 317 (616)
+.. .-...++..|.+.+.+++ ++-.|.+.|++++|..+.-.-. +++......+
T Consensus 159 -s~~---y~~~k~~~~c~~~~l~~e----------------------lv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~ 211 (336)
T d1b89a_ 159 -WSR---VNIPKVLRAAEQAHLWAE----------------------LVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFK 211 (336)
T ss_dssp -STT---SCHHHHHHHHHTTTCHHH----------------------HHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHH
T ss_pred -ccc---CCHHHHHHHHHHcCChHH----------------------HHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHH
Confidence 111 222334555554444333 4455666666666655443221 1222233445
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 007134 318 VGLAVNGFGKEALELFKEME 337 (616)
Q Consensus 318 ~~~~~~g~~~~A~~l~~~m~ 337 (616)
..+.+..+.+...++.....
T Consensus 212 e~~~k~~N~e~~~~~i~~yL 231 (336)
T d1b89a_ 212 DIITKVANVELYYRAIQFYL 231 (336)
T ss_dssp HHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHccCChHHHHHHHHHHH
Confidence 55566666555555444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00029 Score=56.18 Aligned_cols=97 Identities=10% Similarity=-0.048 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHHhcCCCC-----hhhHHHHHHH
Q 007134 248 VSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGII---IAAQRVFREMRKRN-----AVSWSTLVVG 319 (616)
Q Consensus 248 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~m~~~~-----~~~~~~li~~ 319 (616)
..+++.+...+++++|++.|....+.+ +.+..++..+..++.+.++. ++|..+|+++...+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777778888888888888888876 55677777777777765544 45888888876532 2256677888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCcCCHHH
Q 007134 320 LAVNGFGKEALELFKEMEIGGFVPGEVT 347 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t 347 (616)
|.+.|++++|++.|++..+ +.|+..-
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHH
Confidence 8888888888888888877 4566543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.68 E-value=0.00025 Score=60.31 Aligned_cols=63 Identities=6% Similarity=-0.065 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 414 VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 414 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
.+|..+..++...|++++|+..++++++++|++..+|..++.+|...|++++|.+.++...+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667788899999999999999999999999999999999999999999999999998763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=5.4e-06 Score=84.96 Aligned_cols=108 Identities=9% Similarity=-0.030 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHH
Q 007134 346 VTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGA 422 (616)
Q Consensus 346 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a 422 (616)
..+..+...+.+.|+.+.|...+..... ++ ...+..+.+.+...|++++|...|++. ...| +...|+.|...
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCS-----YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAIL 195 (497)
T ss_dssp ----------------------CCHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 3344444555555666666555544432 11 234555556666666666666666554 2444 33566666666
Q ss_pred HHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 423 CTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 423 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
+...|+..+|...|.+++..+|..+.++..|+.++.
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 666666666666666666666655555555555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.54 E-value=0.00025 Score=55.65 Aligned_cols=85 Identities=8% Similarity=-0.078 Sum_probs=37.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCcC-CHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcC
Q 007134 317 VVGLAVNGFGKEALELFKEMEIGGFVP-GEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAG 395 (616)
Q Consensus 317 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 395 (616)
...+.+.|++++|+..|++.... .| +...|..+..++.+.|++++|...|+...+. -+.+...|..+...|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence 33444445555555555554442 22 2344444444444455555555555444431 1122444444444444444
Q ss_pred CHHHHHHHHH
Q 007134 396 LVKQAYEYIQ 405 (616)
Q Consensus 396 ~~~~A~~~~~ 405 (616)
++++|++.++
T Consensus 99 ~~~~A~~~l~ 108 (112)
T d1hxia_ 99 NANAALASLR 108 (112)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=0.00029 Score=60.49 Aligned_cols=113 Identities=11% Similarity=0.012 Sum_probs=79.8
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCcH
Q 007134 351 VLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNMLMPPNAVIWRTLLGACTIHGHSA 430 (616)
Q Consensus 351 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~ 430 (616)
........|++++|.+.|.....-+.-.+-.. +....-......-++. -....+..+..++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 33466778999999999888875322111000 0000001111111111 12357788899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 431 IAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 431 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
+|...++++++.+|.+...|..++.+|.+.|++++|.+.|+.+.+
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988743
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.34 E-value=7.6e-05 Score=61.91 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=47.0
Q ss_pred HHHHHHHHHhC-CCCC-cHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccc
Q 007134 397 VKQAYEYIQNM-LMPP-NAVIWRTLLGACTIHG-----------HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRW 463 (616)
Q Consensus 397 ~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 463 (616)
+++|+..|++. .+.| +..+|..+..++...| ++++|...|+++++++|++...+..|.. .
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~-------~ 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM-------T 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHH-------H
Confidence 45555555544 2444 4556666666665443 3688999999999999997654444443 3
Q ss_pred hHHHHHHHHHhhCCC
Q 007134 464 LNVQEVRRTMVKERV 478 (616)
Q Consensus 464 ~~a~~~~~~m~~~~~ 478 (616)
..|.+++.+..+.|+
T Consensus 130 ~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 456666666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0014 Score=52.64 Aligned_cols=91 Identities=8% Similarity=-0.036 Sum_probs=45.6
Q ss_pred HHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHHHHHHHhCC-CC---C----c-HHHHHHHHHHH
Q 007134 353 YACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYIQNML-MP---P----N-AVIWRTLLGAC 423 (616)
Q Consensus 353 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~---p----d-~~~~~~ll~a~ 423 (616)
..+...|++++|...|....+. -+.+...|..+..+|.+.|++++|++.++++. +. + + ..+|..+...+
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444431 11224444444555555555555555544431 00 1 0 23555666666
Q ss_pred HHcCCcHHHHHHHHHHHhcCCC
Q 007134 424 TIHGHSAIAEIARSTLLQLEPK 445 (616)
Q Consensus 424 ~~~g~~~~a~~~~~~~~~~~p~ 445 (616)
...+++++|+..+++.+..+|+
T Consensus 90 ~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHhCCHHHHHHHHHHHHhcCCC
Confidence 6777777777777777666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.22 E-value=9.5e-05 Score=61.29 Aligned_cols=85 Identities=16% Similarity=0.056 Sum_probs=61.0
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-cHHHHHHHHHHHHH----------cCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhH
Q 007134 391 LGRAGLVKQAYEYIQNM-LMPP-NAVIWRTLLGACTI----------HGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYA 458 (616)
Q Consensus 391 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~ll~a~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 458 (616)
|-+.+.+++|.+.|+.. ...| |+.++..+..++.. .+.+++|+..++++++++|+++.+|..++.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34445566666666555 2344 45555555555543 345688999999999999999999999999998
Q ss_pred hccc-----------chHHHHHHHHHhh
Q 007134 459 YEQR-----------WLNVQEVRRTMVK 475 (616)
Q Consensus 459 ~~g~-----------~~~a~~~~~~m~~ 475 (616)
..|+ +++|.+.+++..+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 7764 5788888887765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.22 E-value=0.00048 Score=57.66 Aligned_cols=86 Identities=13% Similarity=-0.097 Sum_probs=61.4
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCC----------cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCC---------
Q 007134 390 LLGRAGLVKQAYEYIQNM----LMPP----------NAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKH--------- 446 (616)
Q Consensus 390 ~~~~~g~~~~A~~~~~~m----~~~p----------d~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--------- 446 (616)
.+.+.|++++|++.|++. +..| ....|+.+..++...|++++|...+++++++.|..
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666544 1111 13577888888899999999998888887654431
Q ss_pred --CCchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 447 --SGDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 447 --~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
...+..++.+|...|++++|.+.+++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12466789999999999999999998765
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=0.00013 Score=74.34 Aligned_cols=107 Identities=9% Similarity=-0.061 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhhHHHHHHHHH
Q 007134 245 YTMVSLFSACAELGALALGRRAHTYVWKVGLSDNVNVNNALLDFYSKCGIIIAAQRVFREMRK---RNAVSWSTLVVGLA 321 (616)
Q Consensus 245 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 321 (616)
..+..+...+.+.++.+.|...+....+.. ....+..+.+.+...|++++|...|++..+ .+..+|+.|...+.
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~ 197 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS 197 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344455555556666666665555444321 123455566666666777777776666542 24456666766666
Q ss_pred HcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Q 007134 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYAC 355 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 355 (616)
..|+..+|+..|.+..... .|-..++..|...+
T Consensus 198 ~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 198 SKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 6777777777666666543 34445555555444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.00083 Score=50.69 Aligned_cols=72 Identities=14% Similarity=0.027 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----C----CCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhh
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM----L----MPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLL 453 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m----~----~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 453 (616)
.+-.+...+.+.|++++|...|++. + ..++ ..++..|..++.+.|++++|+..++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3445566677777777777766554 1 1233 46888899999999999999999999999999987766555
Q ss_pred h
Q 007134 454 S 454 (616)
Q Consensus 454 ~ 454 (616)
.
T Consensus 87 ~ 87 (95)
T d1tjca_ 87 K 87 (95)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.06 E-value=0.0034 Score=53.50 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhc
Q 007134 112 NTMIRGYAESANPLLAVELYSKMHVSGIKPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAF 191 (616)
Q Consensus 112 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 191 (616)
..........|++++|.+.|.+.+.. .+.... ....+.+-+...-..+.. .....+..+...+.+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALRE--WRGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence 34445677889999999999988764 222110 000110111111111111 1234567788888899
Q ss_pred CCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHH-----HCCCCCCHHH
Q 007134 192 GHVKDACKVFELMSE---RDLVAWNSVINGFASNGKPNEALTLFREMA-----SEGVEPDGYT 246 (616)
Q Consensus 192 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~t 246 (616)
|++++|...+++... .+...|..++.+|.+.|+..+|++.|+++. +.|+.|...|
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 999999998888754 467788999999999999999999888873 3577777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.96 E-value=0.0037 Score=51.93 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCc-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCc
Q 007134 383 HFGCMVDLLGRAGLVKQAYEYIQNM--------LMPPN-----AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGD 449 (616)
Q Consensus 383 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~pd-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 449 (616)
.|+.+..+|.+.|++++|.+.+++. ...++ ...+..+..++...|++++|...|++++++.|.....
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 4555566666666666665555443 12221 2356778889999999999999999999887764443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.78 E-value=0.0013 Score=60.22 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=77.4
Q ss_pred HcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 007134 322 VNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPK-IEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 322 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 400 (616)
+.|++++|+..+++.++.. +-|...+..+...++..|++++|...|+...+. .|+ ...+..+...+...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHHH
Confidence 4577777777777776643 234466666777777777777777777777642 244 33444444444444444443
Q ss_pred HHHHHhC--CCCCc-HHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchh
Q 007134 401 YEYIQNM--LMPPN-AVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYV 451 (616)
Q Consensus 401 ~~~~~~m--~~~pd-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 451 (616)
..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 3322221 12343 344455566778889999999999999999988765543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.47 E-value=0.006 Score=45.64 Aligned_cols=62 Identities=8% Similarity=-0.131 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC-------CchhhhhHHhHhcccchHHHHHHHHHhhC
Q 007134 415 IWRTLLGACTIHGHSAIAEIARSTLLQLEPKHS-------GDYVLLSNLYAYEQRWLNVQEVRRTMVKE 476 (616)
Q Consensus 415 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 476 (616)
.+-.+...+.+.|+++.|+..+++++++.|.++ .++..|+.+|.+.|++++|.+.+++..+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 344678889999999999999999988766543 24667999999999999999999998763
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.31 E-value=0.002 Score=58.92 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=28.0
Q ss_pred cCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007134 155 KLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMS 205 (616)
Q Consensus 155 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 205 (616)
+.|++++|.+.++..++.. +.|...+..|...|+..|++++|.+.|+...
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455555555555555553 4455555555555666666666655555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.73 E-value=0.084 Score=40.39 Aligned_cols=141 Identities=11% Similarity=0.040 Sum_probs=99.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHH
Q 007134 320 LAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQ 399 (616)
Q Consensus 320 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 399 (616)
+.-.|..++..++..+.... .+..-|+.++--....-+-+...++++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 34467888888888887763 355667777766666677777777777765432222 3344444
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCCchhhhhHHhHhcccchHHHHHHHHHhhCCCc
Q 007134 400 AYEYIQNMLMPPNAVIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSGDYVLLSNLYAYEQRWLNVQEVRRTMVKERVK 479 (616)
Q Consensus 400 A~~~~~~m~~~pd~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 479 (616)
....+-.+. .+...++.-+......|+-+.-.++++.+++.+.-+|....-++++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444433 233445556777888899899999999888766666778889999999999999999999999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=2.1 Score=41.18 Aligned_cols=373 Identities=9% Similarity=-0.040 Sum_probs=210.1
Q ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHhCCCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 007134 60 KQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSFPMSYAHNIFSHVQDPNIFTWNTMIRGYAESANPLLAVELYSKMHVSGI 139 (616)
Q Consensus 60 ~~~h~~~~~~g~~~~~~~~~~~li~~y~~~~~~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 139 (616)
.++-.++.+..-.|....+-...+..+++.+ +.......|..-| .++..--....+..+.|+..+|...+...-..|.
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~-~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNELARRE-DWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT-CHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhcc-CHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3566666664322212223344456677777 7887777665433 2454445677788889999999988888776552
Q ss_pred CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHH
Q 007134 140 KPDTHTYPFLLKAISKLADVRMGEQTHSVAIRNGFESLVFVQNSLVHMYAAFGHVKDACKVFELMSERDLVAWNSVINGF 219 (616)
Q Consensus 140 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 219 (616)
. ..... ..++....+.|. .+...+-.-+......|+...|..+...++..........+...
T Consensus 134 ~-~p~~c----------------~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~ 195 (450)
T d1qsaa1 134 S-QPNAC----------------DKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA 195 (450)
T ss_dssp C-CCTHH----------------HHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred C-CchHH----------------HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHH
Confidence 1 22222 234444444442 33333445566677789999999999888765555555555544
Q ss_pred HhCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhCCCCchhHH---HHHHHHHHhcCC
Q 007134 220 ASNGKPNEALTLFREMASEGVEPDGYTMVSLFSACAEL--GALALGRRAHTYVWKVGLSDNVNVN---NALLDFYSKCGI 294 (616)
Q Consensus 220 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~y~~~g~ 294 (616)
. +...+...... ..++......+..+..+. .+.+.+..++............... ..+.......+.
T Consensus 196 ~---~p~~~~~~~~~-----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 267 (450)
T d1qsaa1 196 N---NPNTVLTFART-----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDV 267 (450)
T ss_dssp H---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTC
T ss_pred h---ChHhHHHHHhc-----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCc
Confidence 3 23333333222 123333333333343332 4667777777776654322222111 122223334566
Q ss_pred HHHHHHHHHhcCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhH
Q 007134 295 IIAAQRVFREMRK--RNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMK 372 (616)
Q Consensus 295 ~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 372 (616)
.+.+...++.... .+.....-.+......+++..+...+..|... ..-.....--+..+....|+.+.|..+|..+.
T Consensus 268 ~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 268 TDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 6777777765532 23332223444455678899999999888643 22233444567788889999999999999886
Q ss_pred HhhCCCCChhhHHHHHHHHHhcCCHHHHHHHH-HhCCCCCc-HHH---HHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCC
Q 007134 373 DEYGIMPKIEHFGCMVDLLGRAGLVKQAYEYI-QNMLMPPN-AVI---WRTLLGACTIHGHSAIAEIARSTLLQLEPKHS 447 (616)
Q Consensus 373 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~pd-~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 447 (616)
.. ++ -|.-|.. .+.|..- .+- ...+..++ ... -..-+..+...|....|...+..+.+.. ++
T Consensus 347 ~~----~~--fYG~LAa--~~Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~ 413 (450)
T d1qsaa1 347 QQ----RG--FYPMVAA--QRIGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SK 413 (450)
T ss_dssp TS----CS--HHHHHHH--HHTTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CH
T ss_pred cC----CC--hHHHHHH--HHcCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CH
Confidence 41 33 3433321 1222100 000 00011111 111 1123455678899999999888876432 34
Q ss_pred CchhhhhHHhHhcccchHHHHHHHHHh
Q 007134 448 GDYVLLSNLYAYEQRWLNVQEVRRTMV 474 (616)
Q Consensus 448 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 474 (616)
.....++.+..+.|.++.|+.......
T Consensus 414 ~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 414 TEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 566678888889999999988776653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.99 E-value=2.9 Score=40.23 Aligned_cols=115 Identities=10% Similarity=-0.003 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHhCC-CcCCHH-HH-HHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHHHHHhcCCHHHH
Q 007134 324 GFGKEALELFKEMEIGG-FVPGEV-TF-VGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVDLLGRAGLVKQA 400 (616)
Q Consensus 324 g~~~~A~~l~~~m~~~g-~~p~~~-t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 400 (616)
.+.+.|..++....... ..++.. .. ..+.......+..+.+...+...... ..+.....-.+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHH
Confidence 46777888877765532 222221 11 12222334456677777777666542 23444444455556677888888
Q ss_pred HHHHHhCCCCCc--HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 007134 401 YEYIQNMLMPPN--AVIWRTLLGACTIHGHSAIAEIARSTLLQ 441 (616)
Q Consensus 401 ~~~~~~m~~~pd--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 441 (616)
...++.|+..|. ..-.-=+..+....|+.+.|...+..+..
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 888888864442 22223456778888888888888888764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.01 E-value=0.84 Score=35.54 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=8.3
Q ss_pred CccHHHHHHHHHHHCC
Q 007134 224 KPNEALTLFREMASEG 239 (616)
Q Consensus 224 ~~~~A~~~~~~m~~~g 239 (616)
++++|++.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 3455555555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.00 E-value=1.9 Score=32.75 Aligned_cols=82 Identities=11% Similarity=0.010 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007134 291 KCGIIIAAQRVFREMRKRNAVSWSTLVVGLAVNGFGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKR 370 (616)
Q Consensus 291 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 370 (616)
+|+++......|-.+ ..+....+.-+..+.+.|+-++-.++++++.+. -+|+......+..||.+.|+..++.+++.+
T Consensus 68 ~C~Nlk~vv~C~~~~-n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ 145 (161)
T d1wy6a1 68 KCQNLKSVVECGVIN-NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 145 (161)
T ss_dssp GCSCTHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHh-cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 455555554444444 234445556677788888888888888887664 366777777888888888888888888888
Q ss_pred hHHh
Q 007134 371 MKDE 374 (616)
Q Consensus 371 m~~~ 374 (616)
..++
T Consensus 146 ACe~ 149 (161)
T d1wy6a1 146 ACKK 149 (161)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=91.71 E-value=1.3 Score=34.35 Aligned_cols=49 Identities=8% Similarity=-0.107 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHhcCCCCCCchhhhhHHhHh----cccchHHHHHHHHHhhCCC
Q 007134 428 HSAIAEIARSTLLQLEPKHSGDYVLLSNLYAY----EQRWLNVQEVRRTMVKERV 478 (616)
Q Consensus 428 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 478 (616)
+.++|.+.++++.+.+ ++.+...|+.+|.. ..+.++|.+.+++..+.|.
T Consensus 74 d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 3455555555554432 23445555555544 2355666666666555543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.95 E-value=0.46 Score=36.48 Aligned_cols=47 Identities=4% Similarity=-0.076 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHhcCCCCC-CchhhhhHHhHhcccchHHHHHHHHHhh
Q 007134 429 SAIAEIARSTLLQLEPKHS-GDYVLLSNLYAYEQRWLNVQEVRRTMVK 475 (616)
Q Consensus 429 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 475 (616)
.++|+.+++.+++.+|.+. ..+..|+-+|.+.|++++|.+.++.+.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3455555555555554432 2334555555555555555555555543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.86 E-value=1.7 Score=31.23 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHhcCCChHHHHHHHHHhHHhhCCCCChhhHHHHHH
Q 007134 325 FGKEALELFKEMEIGGFVPGEVTFVGVLYACSHCGMVDEGFSYFKRMKDEYGIMPKIEHFGCMVD 389 (616)
Q Consensus 325 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 389 (616)
+.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4557777778888888999999999999999999999999999999987543 44567776654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.35 E-value=3 Score=31.65 Aligned_cols=70 Identities=13% Similarity=0.019 Sum_probs=44.9
Q ss_pred CChhhHHHHHHHHHhcC---CHHHHHHHHHhCC-CCC-cH-HHHHHHHHHHHHcCCcHHHHHHHHHHHhcCCCCCC
Q 007134 379 PKIEHFGCMVDLLGRAG---LVKQAYEYIQNML-MPP-NA-VIWRTLLGACTIHGHSAIAEIARSTLLQLEPKHSG 448 (616)
Q Consensus 379 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~-~~p-d~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 448 (616)
+++.+--...-++.++. +.++++.++++.- ..| +. ..+-.|.-+|.+.|++++|...++++++++|++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 33334334444444443 3455666665552 233 33 46667777889999999999999999999998653
|