Citrus Sinensis ID: 007155

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----

MVAGKVRMAMGLQKSPANPKHETPPPAKPPSPSPSSAKASSQKTAFSRSFGVYFPRSSAQVQPRPVPDVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASERSKVAELSIESDELSSSQRFQGLVEVSVKSNLIKNLKRAKSSDGVISSLSSDTPNHNHKLERQDSKREEPEGERPRHSRCNSEELAFSFSFDSTQASLRSRVPRVPNPPPKPSSSSSLPADNKLSAGKQFPPPPPPPPSAPKPLPAPAKSAPPPPPPPPKGLRAGPAKVRRIPEVVEFYHSLMRRDSRRDSGAGQSEVLPATSNARDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETVGGSPEEEELIVQGVRFAFRVHQFAGGFDVETMRAFQELRDKARSCHIQCQNQHQQKLVCRSTAC

cccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc

ccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHcccccccccHHHHHHHHHccccccccccccccccccccEEEEccccccccccccccccccccHHHccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHccccccEEEEEcccc

MVAGKVRMAmglqkspanpkhetpppakppspspssakassqktafsrsfgvyfprssaqvqprpvpdVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASERSKVAELSIESDELSSSQRFQGLVEVSVKSNLIKNLkrakssdgvisslssdtpnhnhklerqdskreepegerprhsrcnseelafsfsfdstqaslrsrvprvpnpppkpssssslpadnklsagkqfppppppppsapkplpapaksappppppppkglragpakvrriPEVVEFYHSLMrrdsrrdsgagqsevlpatsnARDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVEsaaftdiedvvPFVKWLDDELSYLVDERAvlkhfdwpeqKADALREAAFGyfdlkkveteassfhddarqpcGLAFKKMQALLEKLEHGVYNLSRMRESATKRyrgfqipmdwmlETGIVSQIKLASVKLAMKYMKRVSAEletvggspeeeELIVQGVRFAFRVhqfaggfdVETMRAFQELRDKARSCHIQCQNQHQQKlvcrstac

mvagkvrmamglqkspanpkhetpppAKPPSPSPSSAKASSQKTAFSRSFGVYFprssaqvqprpvpDVAELLRLVEELRERESLlktelvehklvkasaaivpvLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASERSKVAELsiesdelsssqrfqglVEVSVKSNLIKnlkrakssdgvisslssdtpnhnhklerqdskreepegerprhsrcnseeLAFSFSFDSTQASLRsrvprvpnpppkpssssslPADNKLSAGKQFPPPPPPPPSAPKPLPAPAKSAPPPPPPPPKGLRAGPAKVRRIPEVVEFYHSlmrrdsrrdsgagqsevlpatsnarDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVesaaftdiedVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAEletvggspeeEELIVQGVRFAFRVHQFAGGFDVETMRAFQELRDKARSCHIQcqnqhqqklvcrstac

MVAGKVRMAMGLQKSPANPKHETpppakppspspssakassQKTAFSRSFGVYFPRSSAQVQPRPVPDVAellrlveelreresllktelVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLeqnkrerekkmkemeqeieelkkAASERSKVAelsiesdelsssQRFQGLVEVSVKSNLIKNLKRAKssdgvisslssDTPNHNHKLERQDSKREEPEGERPRHSRCNSEELAFSFSFDSTQAslrsrvprvpnpppkpssssslpADNKLSAGKQFppppppppsapkplpapaksappppppppkglragpakVRRIPEVVEFYHSLMRRDSRRDSGAGQSEVLPATSNARDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETVGGSPEEEELIVQGVRFAFRVHQFAGGFDVETMRAFQELRDKARSCHIQCQNQHQQKLVCRSTAC

**************************************************GVYF**************VAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFK************************************************************************************************************************************************************************************************************************EVVEFYH*******************************IENRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETVG*****EELIVQGVRFAFRVHQFAGGFDVETMRAFQELRDKARSCHIQCQ**************

****KV*****************************************************************LLRLV*************LVEHKLVKASAAIVPVLESE*****************************************************************************************************************************************************************************************************************************************************************************NRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYN***********YRGFQIPMDWMLETGIVSQIKLASVKLA**********************LIVQGVRFAFRVHQFAGGFDVETMRAFQEL**************************

MVAGKVRMAMGLQKS******************************FSRSFGVYFPR********PVPDVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNK*****************************************RFQGLVEVSVKSNLIKNLK*******************************************NSEELAFSFSFDS***************************DNKLSA***************************************PAKVRRIPEVVEFYHSLMR************EVLPATSNARDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETVGGSPEEEELIVQGVRFAFRVHQFAGGFDVETMRAFQELRDKARSC*******************

**************************************************************PRPVPDVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASERS**A*LS*******SSQ**QGLVEVSVKSNLIKNLKRAKSSDGVISSLSS********************************************************************************PPP**************************************PE*********R*********************RDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETVGGSPEEEELIVQGVRFAFRVHQFAGGFDVETMRAFQELRDKARSCHIQCQNQHQQKLVCRST*C

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo

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MVAGKVRMAMGLQKSPANPKHETPPPAKPPSPSPSSAKASSQKTAFSRSFGVYFPRSSAQVQPRPVPDxxxxxxxxxxxxxxxxxxxxxLVEHKLVKASAAIVPVLESEIAAKNTExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAELSIESDELSSSQRFQGLVEVSVKSNLIKNLKRAKSSDGVISSLSSDTPNHNHKLERQDSKREEPEGERPRHSRCNSEELAFSFSFDSTQASLRSRVPRVPNPPPKPSSSSSLPADNKLSAGKQFPPPPPPPPSAPKPLPAPAKSAPPPPPPPPKGLRAGPAKVRRIPEVVEFYHSLMRRDSRRDSGAGQSEVLPATSNARDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETVGGSPEEEELIVQGVRFAFRVHQFAGGFDVETMRAFQELRDKARSCHIQCQNQHQQKLVCRSTAC

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		615	2.2.26 [Sep-21-2011]
Q9LI74		1004	Protein CHUP1, chloroplas	no	no	0.417	0.255	0.602	4e-90

>sp\|Q9LI74\|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1	Back alignment and function desciption

 Score =  332 bits (852), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 165/274 (60%), Positives = 206/274 (75%), Gaps = 17/274 (6%)

Query: 333 KVRRIPEVVEFYHSLMRRDSRRD-------SGAGQSEVLPATSNARD-MIGEIENRSAHL 384
           KV R PE+VEFY SLM+R+S+++       SG G S      S AR+ MIGEIENRS  L
Sbjct: 717 KVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNS------SAARNNMIGEIENRSTFL 770

Query: 385 LAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPE 444
           LA+K DVETQGDF++ L  EV +++FTDIED++ FV WLD+ELS+LVDERAVLKHFDWPE
Sbjct: 771 LAVKADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPE 830

Query: 445 QKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRE 504
            KADALREAAF Y DL K+E + +SF DD    C  A KKM  LLEK+E  VY L R R+
Sbjct: 831 GKADALREAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRD 890

Query: 505 SATKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETVGGS---PEEEELI 561
            A  RY+ F IP+DW+ +TG+V +IKL+SV+LA KYMKRV+ EL++V GS   P  E L+
Sbjct: 891 MAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLL 950

Query: 562 VQGVRFAFRVHQFAGGFDVETMRAFQELRDKARS 595
           +QGVRFAFRVHQFAGGFD E+M+AF+ELR +A++
Sbjct: 951 LQGVRFAFRVHQFAGGFDAESMKAFEELRSRAKT 984

Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		615
449433760		620	PREDICTED: uncharacterized protein LOC10	0.973	0.966	0.713	0.0
255563102		616	conserved hypothetical protein [Ricinus	0.975	0.974	0.711	0.0
224116928		613	predicted protein [Populus trichocarpa]	0.962	0.965	0.685	0.0
297740484		522	unnamed protein product [Vitis vinifera]	0.848	1.0	0.661	0.0
356519651		617	PREDICTED: uncharacterized protein LOC10	0.954	0.951	0.671	1e-179
356548627		615	PREDICTED: uncharacterized protein LOC10	0.959	0.959	0.667	1e-179
356546591		664	PREDICTED: uncharacterized protein LOC10	0.951	0.881	0.589	1e-170
356557732		603	PREDICTED: uncharacterized protein LOC10	0.946	0.965	0.597	1e-168
30684447		642	uncharacterized protein [Arabidopsis tha	0.957	0.917	0.561	1e-165
297804306		636	hypothetical protein ARALYDRAFT_493003 [	0.954	0.922	0.569	1e-163

>gi\|449433760\|ref\|XP_004134665.1\| PREDICTED: uncharacterized protein LOC101215972 [Cucumis sativus] gi\|449479232\|ref\|XP_004155543.1\| PREDICTED: uncharacterized protein LOC101228184 [Cucumis sativus]	Back alignment and taxonomy information

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/636 (71%), Positives = 518/636 (81%), Gaps = 37/636 (5%)

Query: 1   MVAGKVRMAMGLQKSPANPKHETPPPAKPPS-PSPSSAKASSQKTAFSRSFGVYFPRSSA 59
           MVAGKV++AMGLQKSPA+ K E+ P    P+ PSPSS K S QKT FSRSFGVYFPRSSA
Sbjct: 1   MVAGKVKVAMGLQKSPASRKVESSPKTSTPAQPSPSSGKVS-QKTVFSRSFGVYFPRSSA 59

Query: 60  QVQPRPVPDVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELEL 119
           QVQPRP PDV ELLR+VEELR+RE+ LKT+L+EHKL+K S AIVPVLE+EI+ K+ E+E 
Sbjct: 60  QVQPRP-PDVTELLRMVEELRDREARLKTDLLEHKLLKESVAIVPVLENEISTKDAEIER 118

Query: 120 SFKKIESLQCENERLKEMLEQNKR-------EREKKMKEMEQEIEELKKAASERSKVAEL 172
           + K+I  L+ ENERL+  +E+ K+       E ++++K ME E+ ELKK A +RS++ EL
Sbjct: 119 ASKRILFLEAENERLRVQVEEAKQSVEEERRESQERIKAMEGEVAELKKMALDRSRM-EL 177

Query: 173 SIESDELSSSQRFQGLVEVSVKSNLIKNLKRA-KSSDGVISSLSSDTPNHNHKLERQDSK 231
            +E+DELS+SQRFQGL+EVS KSNLI+NLKRA K SD V++         NHK+E  ++K
Sbjct: 178 ILENDELSASQRFQGLMEVSGKSNLIRNLKRATKCSDAVVN-------QDNHKVEHPEAK 230

Query: 232 REEPEGERPRHSRCNSEELAFSFSFDSTQASLRSRVPRVPNPPPKPSSSSSLPADNKLSA 291
           +EE E ERPRHSRCNSEELA     +ST ++++SR+PRVP PPPKPSSSSS  A    S+
Sbjct: 231 KEEVETERPRHSRCNSEELA-----ESTLSNIKSRIPRVPKPPPKPSSSSSSSATTSTSS 285

Query: 292 G---------KQFPPPPPPPPSA-PKPLPAPAKSAPPPPPPPPKGLRAGPAKVRRIPEVV 341
                     K  P PPP P  A P P P P+KSAPPPPPPPPKG R  PAKVRRIPEVV
Sbjct: 286 SSTGSSADIEKAIPAPPPVPTKAMPPPPPPPSKSAPPPPPPPPKGKRLMPAKVRRIPEVV 345

Query: 342 EFYHSLMRRDSRRDSGAGQSEVLPATSNARDMIGEIENRSAHLLAIKTDVETQGDFIRYL 401
           EFYHSLMRRDSRRDSG+G +E  P+T+NARDMIGEIENRSAHLLAIKTDVETQGDFIR+L
Sbjct: 346 EFYHSLMRRDSRRDSGSGVTEP-PSTANARDMIGEIENRSAHLLAIKTDVETQGDFIRFL 404

Query: 402 IKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLK 461
           IKEVE+A+FTDIEDVVPFVKWLDDELS+LVDERAVLKHF WPEQKADALREAAFGY DLK
Sbjct: 405 IKEVENASFTDIEDVVPFVKWLDDELSFLVDERAVLKHFQWPEQKADALREAAFGYCDLK 464

Query: 462 KVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWML 521
           K+E+EASSF  DARQPCG A KKMQALLEKLEHGVYNLSRMRESA KRY+ FQIP++WML
Sbjct: 465 KLESEASSFRGDARQPCGSALKKMQALLEKLEHGVYNLSRMRESAAKRYKAFQIPVEWML 524

Query: 522 ETGIVSQIKLASVKLAMKYMKRVSAELETVGGSPEEEELIVQGVRFAFRVHQFAGGFDVE 581
           + GIVSQIKL SVKLAMKYMKRVSAELETVGG PEEEELIVQGVRFAFRVHQFAGGFDVE
Sbjct: 525 DGGIVSQIKLVSVKLAMKYMKRVSAELETVGGGPEEEELIVQGVRFAFRVHQFAGGFDVE 584

Query: 582 TMRAFQELRDKARSCHIQCQNQHQQKLV--CRSTAC 615
           TMRAFQELRDKA SCH+QCQNQ Q K V   R T C
Sbjct: 585 TMRAFQELRDKASSCHVQCQNQQQHKYVWSSRPTTC 620

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255563102\|ref\|XP_002522555.1\| conserved hypothetical protein [Ricinus communis] gi\|223538246\|gb\|EEF39855.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224116928\|ref\|XP_002317429.1\| predicted protein [Populus trichocarpa] gi\|222860494\|gb\|EEE98041.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297740484\|emb\|CBI30666.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356519651\|ref\|XP_003528484.1\| PREDICTED: uncharacterized protein LOC100784618 [Glycine max]	Back alignment and taxonomy information

>gi\|356548627\|ref\|XP_003542702.1\| PREDICTED: uncharacterized protein LOC100799946 [Glycine max]	Back alignment and taxonomy information

>gi\|356546591\|ref\|XP_003541708.1\| PREDICTED: uncharacterized protein LOC100814896 [Glycine max]	Back alignment and taxonomy information

>gi\|356557732\|ref\|XP_003547165.1\| PREDICTED: uncharacterized protein LOC100782144 [Glycine max]	Back alignment and taxonomy information

>gi\|30684447\|ref\|NP_193591.2\| uncharacterized protein [Arabidopsis thaliana] gi\|22135814\|gb\|AAM91093.1\| AT4g18560/F28J12_220 [Arabidopsis thaliana] gi\|28416477\|gb\|AAO42769.1\| At4g18560/F28J12_220 [Arabidopsis thaliana] gi\|332658661\|gb\|AEE84061.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297804306\|ref\|XP_002870037.1\| hypothetical protein ARALYDRAFT_493003 [Arabidopsis lyrata subsp. lyrata] gi\|297315873\|gb\|EFH46296.1\| hypothetical protein ARALYDRAFT_493003 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		615
TAIR\|locus:2831359		642	AT4G18570 [Arabidopsis thalian	0.458	0.439	0.8	3.2e-136
TAIR\|locus:2102385		1004	CHUP1 "CHLOROPLAST UNUSUAL POS	0.422	0.258	0.609	1.5e-83
TAIR\|locus:2007477		392	AT1G07120 "AT1G07120" [Arabido	0.414	0.650	0.523	1.2e-65
TAIR\|locus:2007755		558	AT1G48280 "AT1G48280" [Arabido	0.429	0.473	0.472	4.8e-64
TAIR\|locus:2206066		907	AT1G61080 "AT1G61080" [Arabido	0.255	0.173	0.253	0.00034

TAIR\|locus:2831359 AT4G18570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1156 (412.0 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
 Identities = 232/290 (80%), Positives = 253/290 (87%)

Query:   334 VRRIPEVVEFYHSLMRRDS---RRDS-GAGQS--EVLPATSNARDMIGEIENRSAHLLAI 387
             VRR+PEVVEFYHSLMRRDS   RRDS G G +  E + A SNARDMIGEIENRS +LLAI
Sbjct:   353 VRRVPEVVEFYHSLMRRDSTNSRRDSTGGGNAAAEAILANSNARDMIGEIENRSVYLLAI 412

Query:   388 KTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKA 447
             KTDVETQGDFIR+LIKEV +AAF+DIEDVVPFVKWLDDELSYLVDERAVLKHF+WPEQKA
Sbjct:   413 KTDVETQGDFIRFLIKEVGNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHFEWPEQKA 472

Query:   448 DALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESAT 507
             DALREAAF YFDLKK+ +EAS F +D RQ    A KKMQAL EKLEHGVY+LSRMRESA 
Sbjct:   473 DALREAAFCYFDLKKLISEASRFREDPRQSSSSALKKMQALFEKLEHGVYSLSRMRESAA 532

Query:   508 KRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETV-GGSPEEEELIVQGVR 566
              +++ FQIP+DWMLETGI SQIKLASVKLAMKYMKRVSAELE + GG PEEEELIVQGVR
Sbjct:   533 TKFKSFQIPVDWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEGGGPEEEELIVQGVR 592

Query:   567 FAFRVHQFAGGFDVETMRAFQELRDKARSCHIQCQNQ-HQQKLVCRSTAC 615
             FAFRVHQFAGGFD ETM+AF+ELRDKARSCH+QCQ+Q HQ KL  RST C
Sbjct:   593 FAFRVHQFAGGFDAETMKAFEELRDKARSCHVQCQSQTHQHKLCFRSTPC 642

GO:0009507 "chloroplast" evidence=ISM

TAIR\|locus:2102385 CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007477 AT1G07120 "AT1G07120" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007755 AT1G48280 "AT1G48280" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2206066 AT1G61080 "AT1G61080" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		615
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	2e-06
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	2e-06
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-06
pfam12868		135	pfam12868, DUF3824, Domain of unknwon function (DU	5e-06
pfam07174		297	pfam07174, FAP, Fibronectin-attachment protein (FA	6e-06
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
pfam07174		297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-05
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-05
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-05
PRK14950		585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
PTZ00108		1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	6e-05
pfam13851		201	pfam13851, GAS, Growth-arrest specific micro-tubul	9e-05
PTZ00144		418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	9e-05
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	1e-04
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	1e-04
pfam05518		753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-04
PRK12270		1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-04
PRK12270		1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
pfam03154		979	pfam03154, Atrophin-1, Atrophin-1 family	2e-04
PRK12270		1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
PRK14965		576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
PLN03188		1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	4e-04
pfam04652		315	pfam04652, DUF605, Vta1 like	4e-04
PRK12323		700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-04
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	5e-04
pfam04156		186	pfam04156, IncA, IncA protein	5e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PRK03427		333	PRK03427, PRK03427, cell division protein ZipA; Pr	6e-04
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	7e-04
COG5178		2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	7e-04
PRK14951		618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-04
pfam04652		315	pfam04652, DUF605, Vta1 like	8e-04
PLN02745		596	PLN02745, PLN02745, Putative pectinesterase/pectin	8e-04
PHA03247		3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-04
PRK14951		618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
PRK00404		141	PRK00404, tatB, sec-independent translocase; Provi	0.001
pfam12526		115	pfam12526, DUF3729, Protein of unknown function (D	0.001
PHA03291		401	PHA03291, PHA03291, envelope glycoprotein I; Provi	0.001
PHA03307		1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK11855		547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.001
PHA03201		318	PHA03201, PHA03201, uracil DNA glycosylase; Provis	0.001
pfam07174		297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.002
PRK12270		1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK12270		1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK14951		618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.002
PRK14948		620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK07764		824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
pfam10152		147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.002
COG1293		564	COG1293, COG1293, Predicted RNA-binding protein ho	0.002
PRK14950		585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.003
pfam12526		115	pfam12526, DUF3729, Protein of unknown function (D	0.003
pfam04554		57	pfam04554, Extensin_2, Extensin-like region	0.003
pfam06346		160	pfam06346, Drf_FH1, Formin Homology Region 1	0.004
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
PRK12270		1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.004

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

 Score = 50.7 bits (122), Expect = 2e-06
 Identities = 32/150 (21%), Positives = 63/150 (42%), Gaps = 8/150 (5%)

Query: 69  VAELLRL----VEELRERESLLKTELVEHKLVKASAAIV---PVLESEIAAKNTELELSF 121
           +  L  L    +E+L+E  S  +   +   L K S A+      L      +  + ++S 
Sbjct: 22  LEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSV 81

Query: 122 KKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASERSKVAELSIESDELSS 181
           K +E L  + E   E +E+  +E E+++ E+E EI+EL++            ++   L  
Sbjct: 82  KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLG 141

Query: 182 SQRFQGLVEVSVKSNLIKNLKRAKSSDGVI 211
            +     V  +V  + ++ LK     + V 
Sbjct: 142 FKYVSVFV-GTVPEDKLEELKLESDVENVE 170

Length = 646

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)	Back alignment and domain information

>gnl\|CDD\|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

>gnl\|CDD\|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	Back alignment and domain information

>gnl\|CDD\|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding	Back alignment and domain information

>gnl\|CDD\|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

>gnl\|CDD\|218621 pfam05518, Totivirus_coat, Totivirus coat protein	Back alignment and domain information

>gnl\|CDD\|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|217393 pfam03154, Atrophin-1, Atrophin-1 family	Back alignment and domain information

>gnl\|CDD\|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

>gnl\|CDD\|217933 pfam04156, IncA, IncA protein	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

>gnl\|CDD\|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|218191 pfam04652, DUF605, Vta1 like	Back alignment and domain information

>gnl\|CDD\|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor	Back alignment and domain information

>gnl\|CDD\|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional	Back alignment and domain information

>gnl\|CDD\|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|166942 PRK00404, tatB, sec-independent translocase; Provisional	Back alignment and domain information

>gnl\|CDD\|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)	Back alignment and domain information

>gnl\|CDD\|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional	Back alignment and domain information

>gnl\|CDD\|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	Back alignment and domain information

>gnl\|CDD\|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	Back alignment and domain information

>gnl\|CDD\|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional	Back alignment and domain information

>gnl\|CDD\|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)	Back alignment and domain information

>gnl\|CDD\|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>gnl\|CDD\|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)	Back alignment and domain information

>gnl\|CDD\|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]	Back alignment and domain information

>gnl\|CDD\|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>gnl\|CDD\|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)	Back alignment and domain information

>gnl\|CDD\|218146 pfam04554, Extensin_2, Extensin-like region	Back alignment and domain information

>gnl\|CDD\|148139 pfam06346, Drf_FH1, Formin Homology Region 1	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		615
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.88
KOG1924		1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.57
KOG1923		830	consensus Rac1 GTPase effector FRL [Signal transdu	98.49
KOG3671		569	consensus Actin regulatory protein (Wiskott-Aldric	96.96
KOG1923		830	consensus Rac1 GTPase effector FRL [Signal transdu	96.02
KOG3671		569	consensus Actin regulatory protein (Wiskott-Aldric	95.33
KOG1830		518	consensus Wiskott Aldrich syndrome proteins [Cytos	94.88
PF05308		253	Mito_fiss_reg: Mitochondrial fission regulator; In	94.5
PF15290		305	Syntaphilin: Golgi-localised syntaxin-1-binding cl	94.24
PHA03247		3151	large tegument protein UL36; Provisional	94.03
PHA01732		94	proline-rich protein	93.99
PHA03247		3151	large tegument protein UL36; Provisional	93.44
KOG1925		817	consensus Rac1 GTPase effector FHOS [Signal transd	93.09
PF10226		195	DUF2216: Uncharacterized conserved proteins (DUF22	91.54
COG5178		2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	91.53
PRK10884		206	SH3 domain-containing protein; Provisional	90.99
KOG2391		365	consensus Vacuolar sorting protein/ubiquitin recep	90.69
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	88.51
PRK09752		1250	adhesin; Provisional	87.95
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	87.21
KOG1853		333	consensus LIS1-interacting protein NUDE [Cytoskele	85.46
PRK11637		428	AmiB activator; Provisional	84.82
KOG4590		409	consensus Signal transduction protein Enabled, con	84.18
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	81.77
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	81.77
KOG0162		1106	consensus Myosin class I heavy chain [Cytoskeleton	81.36
PF03276		582	Gag_spuma: Spumavirus gag protein; InterPro: IPR00	81.21
COG2433		652	Uncharacterized conserved protein [Function unknow	80.84
KOG1830		518	consensus Wiskott Aldrich syndrome proteins [Cytos	80.67
KOG3997		281	consensus Major apurinic/apyrimidinic endonuclease	80.56
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	80.22

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

Probab=99.88  E-value=4.6e-21  Score=213.41  Aligned_cols=100  Identities=17%  Similarity=0.164  Sum_probs=88.4

Q ss_pred             CCcchhhHhHHHHHHhhhhhhhhhhccccc---chhhHHHHHHHHhhccccC--------------hhhhhhhhhhhHHH
Q 007155          364 LPATSNARDMIGEIENRSAHLLAIKTDVET---QGDFIRYLIKEVESAAFTD--------------IEDVVPFVKWLDDE  426 (615)
Q Consensus       364 ~~~k~~~~DL~~ELenrSs~l~aiK~DVEd---~~k~IkkL~kELrvld~kd--------------~eeV~~fv~wvDee  426 (615)
                      --+++++.|||++|+.+|+++.+++++.++   .++..+|+++||+++|.|+              |++|+.+|++||+.
T Consensus       649 ~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~  728 (1102)
T KOG1924|consen  649 NEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNED  728 (1102)
T ss_pred             chhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHH
Confidence            346899999999999999999999988777   3334599999999999984              68899999999999


Q ss_pred             HhHHHhHHHHHhcCCCchHHHHHHHHHHhcccchhhHH
Q 007155          427 LSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVE  464 (615)
Q Consensus       427 L~~l~de~~VLK~Fp~PekkldaLreaa~~Y~dL~eLe  464 (615)
                      +.+...+++++||+|.+++ ++.|++.+.+|.+|.+.+
T Consensus       729 vLse~~iqnLik~lPe~E~-l~~L~e~Kaeye~l~e~E  765 (1102)
T KOG1924|consen  729 VLSESMIQNLIKHLPEQEQ-LNKLSELKAEYEDLPEPE  765 (1102)
T ss_pred             HHHHHHHHHHHHhCCCHHH-HHHHHHHHHhccCCCCHH
Confidence            8888889999999997666 999999999999998876

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]	Back alignment and domain information

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function	Back alignment and domain information

>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp	Back alignment and domain information

>PHA03247 large tegument protein UL36; Provisional	Back alignment and domain information

>PHA01732 proline-rich protein	Back alignment and domain information

>PHA03247 large tegument protein UL36; Provisional	Back alignment and domain information

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain	Back alignment and domain information

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PRK09752 adhesin; Provisional	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]	Back alignment and domain information

>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein	Back alignment and domain information

>COG2433 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]	Back alignment and domain information

>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		615
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3pgw_B		231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-06
3pgw_B		231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
3pgw_B		231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-04
3pgw_B		231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-04
3pgw_B		231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	6e-04
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-06
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
1pk8_A		422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-05
3v1v_A		433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-05
3v1v_A		433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
2yew_A		253	Capsid protein, coat protein; alphavirus, molecula	3e-04
2z73_A		448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-04
1m2v_B		926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 23/108 (21%), Positives = 46/108 (42%), Gaps = 3/108 (2%)

Query: 70   AELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQC 129
                   E+LR     L+    E    K +   V  L+ EIA    EL  +  + ++++ 
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEE---AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE 1012

Query: 130  ENERLKEMLEQNKREREKKMKEMEQEIEELKKAASERSKVAELSIESD 177
              ++ K   EQ   E +++   ++ E EEL +   +++K    ++E  
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060

PyMOL of 2dfs

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231	Back alignment and structure

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231	Back alignment and structure

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231	Back alignment and structure

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231	Back alignment and structure

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422	Back alignment and structure

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433	Back alignment and structure

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433	Back alignment and structure

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253	Back alignment and structure

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448	Back alignment and structure

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		615
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	93.16
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	87.88
3obv_E		457	Protein diaphanous homolog 1; autoinhibition, acti	86.76
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	85.98
3mq9_A		471	Bone marrow stromal antigen 2 fused to maltose-BI	85.49
2v66_B		111	Nuclear distribution protein NUDE-like 1; structur	84.99
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	84.44
3ghg_A		562	Fibrinogen alpha chain; triple-stranded coiled coi	83.48
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	80.92

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

Probab=93.16  E-value=0.97  Score=44.00  Aligned_cols=106  Identities=21%  Similarity=0.252  Sum_probs=73.6

Q ss_pred             HHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 007155           76 VEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQE  155 (615)
Q Consensus        76 VeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkq  155 (615)
                      ..++..++..++.+|.+  .--.+-+.=.+||.+|.+.++.+..++..+..+..++..++.+++....+....+..|+..
T Consensus        19 ~~~~~q~~~~le~El~E--FqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~e   96 (189)
T 2v71_A           19 SMKYKQSFQEARDELVE--FQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDD   96 (189)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666777777766  2233444555888899999998888888888999999999999888888888888888888


Q ss_pred             HHHHHHHhh-hhhhhhcccccccccchhh
Q 007155          156 IEELKKAAS-ERSKVAELSIESDELSSSQ  183 (615)
Q Consensus       156 L~ELeKe~~-~~~~~~~~~~~~~~~~ss~  183 (615)
                      +..|..... ....+.++-..+||.-...
T Consensus        97 l~~l~~~~~~l~~~ireLEq~NDdlEr~~  125 (189)
T 2v71_A           97 LSQTRAIKEQLHKYVRELEQANDDLERAK  125 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            888876653 2223333333445554333

PyMOL of 2v71

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}	Back alignment and structure

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		615
d2bdea1		458	c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'	0.002

>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]} Length = 458	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5' nucleotidase-like
domain: Cytosolic IMP-GMP specific 5'-nucleotidase
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)

Query: 99  SAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNK-REREKKMKEMEQEIE 157
           +A +V  L  EIA++   L +  KKI       + L++       R  ++  ++ +QEI 
Sbjct: 319 TALVVEELGEEIASQIRALPI-EKKIGEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIH 377

Query: 158 ELKKAASE-RSKVAELSIESDEL 179
           +L+   S    +++ L  E +  
Sbjct: 378 DLQLQISTVDLQISRLLQEQNSF 400

PyMOL of d2bdea1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00