Citrus Sinensis ID: 007162


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
MGGACSGGTKRQNQKIGQNTSRFSGKLKSVNASNQGKNHHSNANLDDHVKKKEKMNLEDTSSLPFSCELASRPDKKGSNKMTQKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGFISGVTSKGNKISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGHEFGKGTATNDNLTRLQTLYHADKQKTDKYILELVIWLNRLISILRHKDHGSQPLPTRFPTQKGTVSHSQMPRTLSLNYGTKTHRIQLSQEEQNLLDKTNGRRLIPGISKSQEFSVAKKKGSKVWALCKSTGSSPNREMSGRQNLDHPKANILDVMDGLDSWY
ccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccEEEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHcccccccccccccccccccccccccccccccccccHHHccccccc
cccEEccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHccHHHHHHHHHHccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccccHHHHHHHHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcHccccccccccccccccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHccccccccccccccccccccccccEcccHHHcHcEEccccccc
mggacsggtkrqnqkigqntsrfsgklksvnasnqgknhhsnanlddhVKKKekmnledtsslpfscelasrpdkkgsnkmtqkrsfmgrggaaGLAMTVDVLDALGSSmsslnassgfisgvtskgnkISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFgnlckdpqwhnldrYFSNLKSEylnhrqprgeAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLeeldslnlprkgegvtflhSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFgsdgrtlisddpakipeslgsagLALHYANIINQIdnivsrpsslppnmrdtlynglpaTVKMNLRSRlqtvngkeelpaFQIKAEMEKTLQWLVPVatnttkahqgfgwvgewantghefgkgtatndnltRLQTLYHADKQKTDKYILELVIWLNRLISILrhkdhgsqplptrfptqkgtvshsqmprtlslnygtkthRIQLSQEEQNLldktngrrlipgisksQEFSVAKKKGSKVWALCKstgsspnremsgrqnldhpkanILDVMDGLDSWY
mggacsggtkrqnqkigqntsrfsgKLKSVNasnqgknhhsnanlddhVKKKEKMNledtsslpfscelasrpdkkgsnkmtqKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGFISGVTSKGNKISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRfgnlckdpqwhNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLEEldslnlprkgegvtflhsdlkqqRKLVRslkkkslwsrnLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGHEFGKGTATNDNLTRLQTLYHADKQKTDKYILELVIWLNRLISILRHkdhgsqplptrfptqkgtvshsqmpRTLSLNYGTKTHRIQLSQEEQNLLDKTNGRRLipgisksqefsvakkkgskvwALCKstgsspnremsgrqnldhpkanildVMDGLDSWY
MGGACSGGTKRQNQKIGQNTSRFSGKLKSVNASNQGKNHHSNANLDDHVKKKEKMNLEDTSSLPFSCELASRPDKKGSNKMTQKRSFMGRGGAAGLAMTVDVLDalgssmsslnassgFISGVTSKGNKISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDlkqqrklvrslkkkslwsrnlEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGHEFGKGTATNDNLTRLQTLYHADKQKTDKYILELVIWLNRLISILRHKDHGSQPLPTRFPTQKGTVSHSQMPRTLSLNYGTKTHRIQLSQEEQNLLDKTNGRRLIPGISKSQEFSVAKKKGSKVWALCKSTGSSPNREMSGRQNLDHPKANILDVMDGLDSWY
*********************************************************************************************AGLAMTVDVLDAL***********GFISGVTSKGNKISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYL*****************TLAQHTSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISD***KIPESLGSAGLALHYANIINQIDNIVS***********TLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGHEFGKGTATNDNLTRLQTLYHADKQKTDKYILELVIWLNRLISILRH****************************************************************************VWAL************************************
**G*******************************************************************************************GLAMTVDVLDAL*************************ILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPR***ETRMKELTTLAQHTSELYHEYNALDRFELD**********************************RSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFG*************************HYANIINQIDN************RDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGE******************TRLQTLYHADKQKTDKYILELVIWLNRLIS*************************************************QNLLDKTNGRR******************************************DHPKANILDVMDGLDSW*
*****************QNTSRFSGKLKSVNASNQGKNHHSNANLDDHVKKKEKMNLEDTSSLPFSCELA*************KRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGFISGVTSKGNKISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGHEFGKGTATNDNLTRLQTLYHADKQKTDKYILELVIWLNRLISILRHKDHGSQPLPTRFP***********PRTLSLNYGTKTHRIQLSQEEQNLLDKTNGRRLIPGISKSQ***********VWALCKS************QNLDHPKANILDVMDGLDSWY
***********************************************************************************************LAMTVDVLDALGSS**********IS*****GNKISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLEEL********GEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSD**************SLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGHEF***TATNDNLTRLQTLYHADKQKTDKYILELVIWLNRLISILRH*********************************************QNLLDKTNGRR**************************************RQNLDHPKANILDVMDGLDSWY
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MGGACSGGTKRQNQKIGQNTSRFSGKLKSVNASNQGKNHHSNANLDDHVKKKEKMNLEDTSSLPFSCELASRPDKKGSNKMTQKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGFISGVTSKGNKISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGHEFGKGTATNDNLTRLQTLYHADKQKTDKYILELVIWLNRLISILRHKDHGSQPLPTRFPTQKGTVSHSQMPRTLSLNYGTKTHRIQLSQEEQNLLDKTNGRRLIPGISKSQEFSVAKKKGSKVWALCKSTGSSPNREMSGRQNLDHPKANILDVMDGLDSWY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
255538958620 conserved hypothetical protein [Ricinus 0.990 0.982 0.648 0.0
225457955669 PREDICTED: uncharacterized protein LOC10 0.986 0.907 0.656 0.0
224083022594 predicted protein [Populus trichocarpa] 0.949 0.983 0.609 0.0
297851522613 hypothetical protein ARALYDRAFT_473306 [ 0.969 0.972 0.547 1e-178
356509628604 PREDICTED: uncharacterized protein LOC10 0.972 0.990 0.534 1e-174
18397646615 uncharacterized protein [Arabidopsis tha 0.964 0.964 0.538 1e-174
356517972605 PREDICTED: uncharacterized protein LOC10 0.973 0.990 0.523 1e-173
356562407593 PREDICTED: uncharacterized protein LOC10 0.962 0.998 0.517 1e-168
224065855483 predicted protein [Populus trichocarpa] 0.782 0.995 0.575 1e-167
357466969608 hypothetical protein MTR_3g114010 [Medic 0.975 0.986 0.515 1e-164
>gi|255538958|ref|XP_002510544.1| conserved hypothetical protein [Ricinus communis] gi|223551245|gb|EEF52731.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/621 (64%), Positives = 490/621 (78%), Gaps = 12/621 (1%)

Query: 1   MGGACSGGTKRQNQKIGQ---NTSRFSGKLKSVNASNQGK---NHHSNANLDDHVKKKEK 54
           MGG CSGGTK ++ K+G    N S FSGKLKSV + ++ K   +H  N N DD   K+  
Sbjct: 1   MGGVCSGGTKPRHAKVGDGENNKSGFSGKLKSVKSFSKLKEKNSHLYNTNKDDDFGKRTT 60

Query: 55  MNLEDTSSL--PFSCEL-ASRPDKKGSNKMTQKRSFMGRGGAAGLAMTVDVLDALGSSMS 111
            +  ++  L   FS EL  S P + G+ K +QK SF+G+ GA  L   V+VLD LGSSMS
Sbjct: 61  RSRYNSGELLLNFSRELKPSTPARVGAVKDSQKSSFIGKAGAVSLEKAVEVLDTLGSSMS 120

Query: 112 SLNASSGFISGVTSKGNKISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQE 171
           +LNA SGF+SG+ S+GN+ISILAFEVANTIAKGANLFQSLSEEN+QFL+ E+LHS GVQ+
Sbjct: 121 NLNARSGFVSGMASRGNRISILAFEVANTIAKGANLFQSLSEENVQFLRKEILHSEGVQQ 180

Query: 172 LVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQP 231
           LVSTDM ELL IAA+DKREE DVF REVIRFG+LCKDPQWHNL RYFS L SEY   +QP
Sbjct: 181 LVSTDMTELLCIAASDKREELDVFAREVIRFGDLCKDPQWHNLGRYFSKLDSEYSTDKQP 240

Query: 232 RGEAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSD 291
           R E+E  M+ELTTLAQHTSELYHE NALDRFE DY++KLEE++SL LPRKGE ++ L S+
Sbjct: 241 REESEMIMQELTTLAQHTSELYHELNALDRFEQDYQQKLEEVESLQLPRKGESLSILQSE 300

Query: 292 LKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPE 351
           L+QQRKLVRSLKKKSLWS++L EVMEKFV+I  Y+HQ I++AFG+ G  L ++ P K  +
Sbjct: 301 LRQQRKLVRSLKKKSLWSKSLAEVMEKFVDIVTYLHQIIVDAFGNSGVGLANERPGKNSQ 360

Query: 352 SLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEE 411
            LG+AGLALHYAN+I+QIDNI SRP+SLPPN RD LY GLP  VK  LRS+LQ V+ KEE
Sbjct: 361 RLGAAGLALHYANVIHQIDNIASRPTSLPPNTRDNLYRGLPTYVKKALRSQLQMVDNKEE 420

Query: 412 LPAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGHEFGKGTATNDNLTRLQTL 471
           L   Q+KAEMEKTL WLVPVATNTTKAHQGFGWVGEWANTG+EFGK + T +NL RLQTL
Sbjct: 421 LTVVQVKAEMEKTLHWLVPVATNTTKAHQGFGWVGEWANTGNEFGKNSTTQNNLIRLQTL 480

Query: 472 YHADKQKTDKYILELVIWLNRLISILRHKDHGSQPLPTRFPTQKGTVSHSQMPRTLSLNY 531
           YHADKQKTD YI ELV WL+RLI+++RH+DHG + +P R PT+KG + H++M R  SLN+
Sbjct: 481 YHADKQKTDNYIFELVTWLHRLINLVRHRDHGLKTMPFRSPTRKGKIFHAKMQRLFSLNH 540

Query: 532 GTKTHRIQLSQEEQNLLDKTNGRRLIPGISKSQEFSVAKKKGSKVWALCKSTGSSPNREM 591
            T  + IQLSQE+++LL+K   RRL+PGISKSQEFS+A+K+  K+WA  KSTGSSP R +
Sbjct: 541 DTAAYSIQLSQEDRDLLNKVCRRRLVPGISKSQEFSIARKR-EKIWAFSKSTGSSPVRGI 599

Query: 592 SGRQNLDHPKANILDVMDGLD 612
             RQN++ P+ N+LDVMDGL+
Sbjct: 600 GTRQNVE-PQ-NMLDVMDGLN 618




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457955|ref|XP_002274931.1| PREDICTED: uncharacterized protein LOC100241980 [Vitis vinifera] gi|302142673|emb|CBI19876.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224083022|ref|XP_002306933.1| predicted protein [Populus trichocarpa] gi|222856382|gb|EEE93929.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297851522|ref|XP_002893642.1| hypothetical protein ARALYDRAFT_473306 [Arabidopsis lyrata subsp. lyrata] gi|297339484|gb|EFH69901.1| hypothetical protein ARALYDRAFT_473306 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356509628|ref|XP_003523548.1| PREDICTED: uncharacterized protein LOC100780634 [Glycine max] Back     alignment and taxonomy information
>gi|18397646|ref|NP_564362.1| uncharacterized protein [Arabidopsis thaliana] gi|20466802|gb|AAM20718.1| unknown protein [Arabidopsis thaliana] gi|332193147|gb|AEE31268.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356517972|ref|XP_003527658.1| PREDICTED: uncharacterized protein LOC100795719 [Glycine max] Back     alignment and taxonomy information
>gi|356562407|ref|XP_003549463.1| PREDICTED: uncharacterized protein LOC100785193 [Glycine max] Back     alignment and taxonomy information
>gi|224065855|ref|XP_002301974.1| predicted protein [Populus trichocarpa] gi|222843700|gb|EEE81247.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357466969|ref|XP_003603769.1| hypothetical protein MTR_3g114010 [Medicago truncatula] gi|355492817|gb|AES74020.1| hypothetical protein MTR_3g114010 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query615
TAIR|locus:505006158615 AT1G30755 [Arabidopsis thalian 0.969 0.969 0.503 2.8e-146
TAIR|locus:2026135657 AT1G34320 [Arabidopsis thalian 0.813 0.761 0.489 9.1e-116
TAIR|locus:504956337649 AT5G08660 "AT5G08660" [Arabido 0.843 0.799 0.422 8.4e-97
TAIR|locus:2086218531 AT3G23160 "AT3G23160" [Arabido 0.217 0.252 0.306 8.3e-24
TAIR|locus:2184417599 AT5G04550 "AT5G04550" [Arabido 0.214 0.220 0.362 2e-23
TAIR|locus:2151451474 AT5G51670 [Arabidopsis thalian 0.224 0.291 0.367 5.2e-20
TAIR|locus:505006158 AT1G30755 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
 Identities = 316/627 (50%), Positives = 408/627 (65%)

Query:     1 MGGACSGGTKRQNQK--IGQNT---SR-FSGKLKSVNASNQGKNHHSNANLDDHVKKKEK 54
             MGG CS   K  ++K  +  N    SR FSGKLKS+  S    +++S    D++   + K
Sbjct:     1 MGGVCSCVFKDDDKKKKLRSNDDDKSRGFSGKLKSMRRSKTSDSYYS----DNYGGSRRK 56

Query:    55 MNLEDTSSLPFSCELASRPD-KKGSNKMTQKRSFMGRGGAAGLAMTVDVLDXXXXXXXXX 113
              +  D     FS EL   P  +  S K  Q+ SFMGR G  GL   V+VLD         
Sbjct:    57 SSKPDEVVFNFSGELGPMPPLRNDSTKFMQRNSFMGRAGVMGLEKAVEVLDTLGSSMTRM 116

Query:   114 XXXXXFISGVTS-KGNKISILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQEL 172
                  ++SGVTS +G K++ILAFEVANTIAKGA L QSLSEEN++F+K ++LHS  V++L
Sbjct:   117 NPSNAYLSGVTSSRGGKVTILAFEVANTIAKGAALLQSLSEENLKFMKKDMLHSEEVKKL 176

Query:   173 VSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPR 232
             VSTD  EL  +AA+DKREE D+F  EVIRFGN+CKD QWHNLDRYF  L +E   H+  +
Sbjct:   177 VSTDTTELQILAASDKREELDLFSGEVIRFGNMCKDLQWHNLDRYFMKLDTENSQHKLLK 236

Query:   233 GEAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDX 292
              +AE RM+EL TLA+ TSELYHE  ALDRFE DYRRKL E++SLNLPR+GEG+  L ++ 
Sbjct:   237 DDAEARMQELVTLARITSELYHELQALDRFEQDYRRKLAEVESLNLPRRGEGIVILQNEL 296

Query:   293 XXXXXXXXXXXXXXXXXXXXEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPES 352
                                  E++EK V++ +Y+ Q I+E FG++G  L  ++  +  E 
Sbjct:   297 KQQKKLVKSLQKKSLWSQNLAEIIEKLVDVVSYIRQTIVEVFGNNG--LRDNEGEQGRER 354

Query:   353 LGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEEL 412
             LG AGL+LHYAN+I QIDNI SRPSSLP N+RDTLYN LPATVK  LR RLQT++ +EEL
Sbjct:   355 LGEAGLSLHYANLIQQIDNIASRPSSLPSNVRDTLYNALPATVKTALRPRLQTLDQEEEL 414

Query:   413 PAFQIKAEMEKTLQWLVPVATNTTKAHQGFGWVGEWANTGHEFGKGTA---TNDNLTRLQ 469
                +IKAEMEK+LQWLVP A NTTKAHQGFGWVGEWAN+  EFGKG      N N TRLQ
Sbjct:   415 SVPEIKAEMEKSLQWLVPFAENTTKAHQGFGWVGEWANSRIEFGKGKGKGENNGNPTRLQ 474

Query:   470 TLYHADKQKTDKYILELVIWLNRLISILRHKDHGSQPLPTRF--PTQKGTVSHSQMPRTL 527
             TL+HADK   D Y+LELV+WL+RL+   + + HG +   T    P    T+S++Q+  +L
Sbjct:   475 TLHHADKPIVDSYVLELVVWLHRLMKSSKKRAHGVKLQETNHVSPPNNRTISNTQL--SL 532

Query:   528 SLNYGTKTHRIQLSQEEQNLLDKTNGRRLIPGISKSQEFSVAKK--KGSKVWALCKSTGS 585
             S ++   T++ QLS E++ LLD+    R  P +SKSQE    KK  KG K+WAL +STG+
Sbjct:   533 SPDF---TYKNQLSLEDRLLLDRVQSIRFGPNLSKSQELVGLKKNKKGFKIWALSRSTGN 589

Query:   586 SPNREMSGRQNLDHPKANILDVMDGLD 612
             SP  ++S     D   ++ LDV+DGLD
Sbjct:   590 SPKVDLS-----DKNSSSDLDVLDGLD 611




GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2026135 AT1G34320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956337 AT5G08660 "AT5G08660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086218 AT3G23160 "AT3G23160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184417 AT5G04550 "AT5G04550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151451 AT5G51670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
pfam0500387 pfam05003, DUF668, Protein of unknown function (DU 6e-33
pfam1196157 pfam11961, DUF3475, Domain of unknown function (DU 2e-22
>gnl|CDD|218374 pfam05003, DUF668, Protein of unknown function (DUF668) Back     alignment and domain information
 Score =  121 bits (305), Expect = 6e-33
 Identities = 41/86 (47%), Positives = 56/86 (65%), Gaps = 1/86 (1%)

Query: 353 LGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVN-GKEE 411
           LG AGLALHYAN+I QI+ + S P S+P   RD LY  LPAT++  LRS+L+      +E
Sbjct: 2   LGGAGLALHYANVIIQIEKLASVPHSVPLEARDDLYQMLPATIRAALRSKLKPYLKDYDE 61

Query: 412 LPAFQIKAEMEKTLQWLVPVATNTTK 437
             A + K  M++ L+WL P+A NT +
Sbjct: 62  GLATEWKDAMDRILEWLAPMAHNTIR 87


Uncharacterized plant protein. Length = 87

>gnl|CDD|192898 pfam11961, DUF3475, Domain of unknown function (DUF3475) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 615
PF0500389 DUF668: Protein of unknown function (DUF668); Inte 100.0
PF1196157 DUF3475: Domain of unknown function (DUF3475); Int 99.93
>PF05003 DUF668: Protein of unknown function (DUF668); InterPro: IPR007700 This is a family of uncharacterised plant proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=9.8e-44  Score=307.70  Aligned_cols=86  Identities=56%  Similarity=0.893  Sum_probs=84.8

Q ss_pred             CcchhhhhhhHHHHHHHHHHhhhCCCCCCCchhHHhhccCchHHHHHHhhhcccccCC---CCCcHHHHHHHHHHHhhhh
Q 007162          352 SLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGK---EELPAFQIKAEMEKTLQWL  428 (615)
Q Consensus       352 TLG~AgLALHYANIIi~IEklvs~P~~v~~~aRD~LYqmLP~sIRsaLRsrLr~~~~~---de~~a~ewk~amekiL~WL  428 (615)
                      |||+|||||||||||+|||+|+++|++||+|+||+||||||++||++||+|||++.+.   |+.+++||+++|+|||+||
T Consensus         1 tLG~AgLALhYANvI~~ie~l~~~p~~v~~~aRD~LY~mLP~~ir~aLr~kL~~~~~~~~~d~~~a~~~~~~m~kiL~WL   80 (89)
T PF05003_consen    1 TLGGAGLALHYANVIIQIEKLVSRPSSVPPNARDDLYQMLPPSIRSALRSKLRSYWKKAIYDELLAAEWKDAMEKILEWL   80 (89)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHcCcccCCchHHHHHHhhCcHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999988   9999999999999999999


Q ss_pred             hhhhhhhhc
Q 007162          429 VPVATNTTK  437 (615)
Q Consensus       429 aPmAhNTir  437 (615)
                      +||||||+|
T Consensus        81 ~P~A~nt~r   89 (89)
T PF05003_consen   81 APMAHNTIR   89 (89)
T ss_pred             HHHHHhccC
Confidence            999999997



>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query615
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 73.3 bits (179), Expect = 1e-13
 Identities = 67/427 (15%), Positives = 122/427 (28%), Gaps = 131/427 (30%)

Query: 249 TSELYHEYN-ALDRFELDYRRKLEELDSLNLPR---KGEGVTFL---HSDLKQQRKLVRS 301
           T E  ++Y   L  FE  +    +  D  ++P+     E +  +      +    +L  +
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 302 LKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALH 361
           L  K       EE+++KFVE                                    L ++
Sbjct: 71  LLSKQ------EEMVQKFVE----------------------------------EVLRIN 90

Query: 362 YANIINQI---DNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNG-KEELPAFQI 417
           Y  +++ I       S  + +    RD LYN      K N+ SRLQ     ++ L   ++
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQAL--LEL 147

Query: 418 KAE-------ME---KTLQWLVPVATNTTKAHQGFGWVGEWANTGHEFGKGTATNDNLTR 467
           +         +    KT  W+      + K      +   W N         +    L  
Sbjct: 148 RPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEM 201

Query: 468 LQTLYH---------ADKQKTDKYILELVI-WLNRLISILRHK----------------- 500
           LQ L +         +D     K  +  +   L RL+    ++                 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 501 -DHGSQPLPTRFPTQKGTVSHSQMPRTLSLNYGTKTHRIQLSQEEQNLLDKTNGRRLIPG 559
            +   + L T   T+   V       T  L+  T TH           L     + L+  
Sbjct: 262 FNLSCKILLT---TRFKQV-------TDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLK 309

Query: 560 I--SKSQEFSVAKKKG-----SKVWALCKSTGSSPNREMSGR-QNLDHP----KANILDV 607
               + Q+             S +            R+      N  H        I++ 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESI--------RDGLATWDNWKHVNCDKLTTIIES 361

Query: 608 -MDGLDS 613
            ++ L+ 
Sbjct: 362 SLNVLEP 368


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 615
d1dgsa3314 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dep 0.004
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]} Length = 314 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: DNA ligase/mRNA capping enzyme, catalytic domain
family: Adenylation domain of NAD+-dependent DNA ligase
domain: Adenylation domain of NAD+-dependent DNA ligase
species: Thermus filiformis [TaxId: 276]
 Score = 37.2 bits (85), Expect = 0.004
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 10/160 (6%)

Query: 234 EAETRMKELTTLAQHTSELYH----------EYNALDRFELDYRRKLEELDSLNLPRKGE 283
           EA  R+ EL  L ++ +  Y+          EY+ L R   +   +  E  S + P +  
Sbjct: 5   EARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQV 64

Query: 284 GVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLIS 343
           G   L    +  R   R     + ++       E+ +E  A            DG +++ 
Sbjct: 65  GARPLEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLEREAEAPSLYTVEHKVDGLSVLY 124

Query: 344 DDPAKIPESLGSAGLALHYANIINQIDNIVSRPSSLPPNM 383
            +        G   +       +  I  I  R   +P  +
Sbjct: 125 YEEGVWSTGSGDGEVGEEVTQNLLTIPTIPRRLKGVPDRL 164


Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00