Citrus Sinensis ID: 007246


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-
MAHIHVHTLFSPTFCIPRSPLTSSRNHFAALSCTSPKTTASLSSEQDVLQAVVESDGKTLPCVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERATISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVLFRPGTERNMEDLGNQREVPASFALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLTAALEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPIQ
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccEEcEEEEEcccccEEEEcccccHHHHHHHHHHccccHHHHHHHcccccEEEEEEcccccccccccEEEEEccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccEEEEEccccccccHHcccccccccEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEccccccEEEccccEEEEEccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccHHHHcccccccccEEccccccccccccccccccccccEEEHHHHHHHHHHHHHHcccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHcccccccEEEEcccccEEcccHHHHHcccccccccccccccccccccHHHHHHHHcccEEEEEEEccccEEEEEcccccccccccccHHHHHHHcccccccccccccccccccccEEEEEEEHHcccccccccccccc
cccEEEEccccccccccccccccccccccEEEccccccccccccHHHHHHHHHccccccccEEEEEcHHcEEEEEEccccHHHHHHHHHHcccHHHHHHHHccccEEEEEEEcccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccEEEEEccccccccHccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccEEEcccccEEEEEccHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccHHHHHHHccccHHHHHHHcccccEEEEEcHHHHccccccccHHcccccEEEEEEHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHHHccccccEEEEccccEEEcccHHHHHHcccHcccccccccccHHHccHHHHHHHHHHHcEEEEEEccccEEEcccccHHHEHcHHHcHHHHHHHcccccccccccccccccccccEEEEEEEEEEcccccEEEEcccc
mahihvhtlfsptfciprspltssrnhfaalsctspkttaslSSEQDVLQAVVesdgktlpcvrtyenDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVvetvfpgpsgeratistrlflpasKVKEKAFKLRKSLSKdvlngsssrNILAMTFRQVVMHQLWSFELVlfrpgternmedlgnqrevpasfaltssdERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRwfqkpkritskdsSVVVYKLFEDEIVENAKTLLETFNStkesikpvkmrskhlwwtpsahsklekiggrefsiwtsenvpayrlEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDifslpnkqlscsvvtnytnlpskkrdssFLKILSVTLASGIFLVAISAlgqrssphlhkgekfsGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIkdtfdwpgdimtEMSIGAWIGEipnylklsheddstsegnLTAALEkidpdikssMQDIASYQVVLSTegkivgfqptsrvgvnhwaasplakemyggrklspgliepslkihlpnEVVLIELLMSvnpdscfalarpiq
mahihvhtlfsptfciPRSPLTSSRNHFAALSCTSPKTTASLSSEQDVLQAVvesdgktlpcVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGpsgeratistrlflpaskVKEKAFKLrkslskdvlngsssrNILAMTFRQVVMHQLWSFELVLFRPGTERNMEDLGNQREVPASFALTSSDERVISVLAEVVCLSALqsteshfldnslRKTSSYFFRwfqkpkritskdssvVVYKLFEDEIVENAKTLLEtfnstkesikpvkmrskhlwwtpsahsklekigGREFSIWtsenvpayrleidvsryndVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTnlpskkrdssFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKrikdtfdwpgDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLTAALEKIDPDIKSSMQDIASYQVVLSTEGKIVgfqptsrvgvNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPIQ
MAHIHVHTLFSPTFCIPRSPLTSSRNHFAALSCTSPKTTASLSSEQDVLQAVVESDGKTLPCVRTYENDLVRLSLFGAVGFdqaltaaaadggqaaNEHVVSGIPAMVVETVFPGPSGERATISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVLFRPGTERNMEDLGNQREVPASFALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLTAALEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPIQ
***IHVHTLFSPTFCIPR******************************LQAVVESDGKTLPCVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERATISTRLFLPA************************RNILAMTFRQVVMHQLWSFELVLFRPG*****************FALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALG********************ASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKL****************************DIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFAL*****
*********FSPTFCIPRS*******************************AVVESDGKTLPCVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERATISTRLFLPASK*****************NGSSSRNILAMTFRQVVMHQLWSFELVLFRPGTE************PASFALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKES***VKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVT************SFLKILSVTLASGIFLVAISALGQRSSPHL************************PVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLS*************************MQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPI*
MAHIHVHTLFSPTFCIPRSPLTSSRNHFAALSC***************LQAVVESDGKTLPCVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERATISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVLFRPGTERNMEDLGNQREVPASFALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLS*********NLTAALEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPIQ
*AHIHVHTLFSPTFCIPRSPLTSSRNHFAALSCTSPK*****SSEQDVLQAVVESDGKTLPCVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERATISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVLFRPGTERNMEDLGNQREVPASFALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGE*********AS*EIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSH************ALEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARP**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAHIHVHTLFSPTFCIPRSPLTSSRNHFAALSCTSPKTTASLSSEQDVLQAVVESDGKTLPCVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAMVVETVFPGPSGERATISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVLFRPGTERNMEDLGNQREVPASFALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSEGNLTAALEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query611
359483503624 PREDICTED: uncharacterized protein LOC10 0.996 0.975 0.594 0.0
297740449625 unnamed protein product [Vitis vinifera] 0.996 0.974 0.593 0.0
356546067603 PREDICTED: uncharacterized protein LOC10 0.965 0.978 0.601 0.0
356533747607 PREDICTED: uncharacterized protein LOC10 0.960 0.967 0.597 0.0
255563006628 conserved hypothetical protein [Ricinus 0.962 0.936 0.616 0.0
357446797614 hypothetical protein MTR_2g014890 [Medic 0.968 0.964 0.586 0.0
449434316627 PREDICTED: uncharacterized protein LOC10 0.986 0.961 0.571 0.0
79605744613 uncharacterized protein [Arabidopsis tha 0.954 0.951 0.572 0.0
297851306616 hypothetical protein ARALYDRAFT_473074 [ 0.924 0.917 0.595 0.0
30690476614 uncharacterized protein [Arabidopsis tha 0.954 0.949 0.571 0.0
>gi|359483503|ref|XP_002273236.2| PREDICTED: uncharacterized protein LOC100248663 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/626 (59%), Positives = 471/626 (75%), Gaps = 17/626 (2%)

Query: 1   MAHIHVHTLFSPTFCI-PRSPLT------------SSRNHFAALSCTSPKTTASLSSEQD 47
           MA IH   L  P     PRS  T            + RN    +SC++PK  A  ++EQ+
Sbjct: 1   MAFIHPPALRIPLLTFQPRSSSTRILTFFPKLLFKNPRNSLYIVSCSTPK--AIPATEQE 58

Query: 48  VLQAVVESDGKTLPCVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAM 107
           VL A+ ESD K+LP VR++ENDL RL++ GA+  +QALTAAAADGG  A+EH+ SG+ AM
Sbjct: 59  VLDAIAESDEKSLPAVRSFENDLARLTMVGAIDVEQALTAAAADGGNTADEHIASGMAAM 118

Query: 108 VVETVFPGPSGERATISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMTFRQVV 167
           VVETVFPG S E +T+STRLFLPA KVKEKA +LR+S ++D L+ ++S++ILAMTFRQVV
Sbjct: 119 VVETVFPGASDEHSTVSTRLFLPARKVKEKANRLRRSFTEDFLSSTTSKDILAMTFRQVV 178

Query: 168 MHQLWSFELVLFRPGTERNMEDLGNQREVPASFALTSSDERVISVLAEVVCLSALQSTES 227
           + QLW+FELVLF PGTERNME+L + R+VPASF L+SSDE VISVLAEV+C+SALQ+TE 
Sbjct: 179 LQQLWNFELVLFIPGTERNMEELQDSRKVPASFFLSSSDEGVISVLAEVICISALQTTER 238

Query: 228 HFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIK 287
           HFL+N L +TS+ FF+WF KPK + SKDSSV++Y+LFEDEIVENAK LLE FNS K + K
Sbjct: 239 HFLNNLLGQTSNNFFKWFHKPKSVASKDSSVIMYELFEDEIVENAKNLLENFNSMKANYK 298

Query: 288 PVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAE 347
            ++ ++K+ WWT SA SKLEKIGG EFS WTSE +PAYRL+ID  +   VK EGW++SAE
Sbjct: 299 CIETKTKYHWWTSSAISKLEKIGGPEFSTWTSEYIPAYRLQIDPDKLKSVKFEGWKRSAE 358

Query: 348 NRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSV-VTNYTNLPSKKRDSSFLKILS 406
           NRWE+LLTHSQMV LA+ILDMYYED+++LP+KQL C     N+TNL   KR SS LKIL+
Sbjct: 359 NRWEVLLTHSQMVALANILDMYYEDLYTLPDKQLLCGAGFANFTNLSKNKRISSLLKILT 418

Query: 407 VTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVS 466
           +++ASGIFLVAI+ LG+   P +++  K  G   SL  SEI       ++  K+E  C+S
Sbjct: 419 ISIASGIFLVAINVLGRLYFPRVNEVGKGPGNQPSLLPSEINCVQHNSLETTKMEAFCIS 478

Query: 467 IIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSE-GNLTAALEKIDPDIKS 525
           I+K+IKD F W G+IM E S+GAW G++P YL++   + S  +  N TA L++ D + K+
Sbjct: 479 IVKKIKDAFGWSGEIMAESSVGAWTGDLPIYLRVDKANHSGEDISNGTALLQRSDEEKKT 538

Query: 526 SMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHL 585
           S QDIASYQVVLS +G IVGFQPTSRV VN+WA +PLAKE+Y G+KLSPGL E  LKI  
Sbjct: 539 STQDIASYQVVLSVDGDIVGFQPTSRVAVNNWAVNPLAKELYKGKKLSPGLFETGLKIPR 598

Query: 586 PNEVVLIELLMSVNPDSCFALARPIQ 611
           PNEVV+IELLMSVN D+CFALARP+Q
Sbjct: 599 PNEVVIIELLMSVNSDACFALARPVQ 624




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740449|emb|CBI30631.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356546067|ref|XP_003541453.1| PREDICTED: uncharacterized protein LOC100785118 [Glycine max] Back     alignment and taxonomy information
>gi|356533747|ref|XP_003535421.1| PREDICTED: uncharacterized protein LOC100782020 [Glycine max] Back     alignment and taxonomy information
>gi|255563006|ref|XP_002522507.1| conserved hypothetical protein [Ricinus communis] gi|223538198|gb|EEF39807.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357446797|ref|XP_003593674.1| hypothetical protein MTR_2g014890 [Medicago truncatula] gi|355482722|gb|AES63925.1| hypothetical protein MTR_2g014890 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449434316|ref|XP_004134942.1| PREDICTED: uncharacterized protein LOC101222138 [Cucumis sativus] Back     alignment and taxonomy information
>gi|79605744|ref|NP_973929.2| uncharacterized protein [Arabidopsis thaliana] gi|10764862|gb|AAF24552.2|AC007508_15 F1K23.23 [Arabidopsis thaliana] gi|332192867|gb|AEE30988.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297851306|ref|XP_002893534.1| hypothetical protein ARALYDRAFT_473074 [Arabidopsis lyrata subsp. lyrata] gi|297339376|gb|EFH69793.1| hypothetical protein ARALYDRAFT_473074 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30690476|ref|NP_174175.2| uncharacterized protein [Arabidopsis thaliana] gi|28973742|gb|AAO64187.1| unknown protein [Arabidopsis thaliana] gi|30793961|gb|AAP40432.1| unknown protein [Arabidopsis thaliana] gi|110737261|dbj|BAF00578.1| hypothetical protein [Arabidopsis thaliana] gi|332192868|gb|AEE30989.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query611
TAIR|locus:2018728614 AT1G28530 "AT1G28530" [Arabido 0.952 0.947 0.550 1.1e-167
TAIR|locus:2018728 AT1G28530 "AT1G28530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1631 (579.2 bits), Expect = 1.1e-167, P = 1.1e-167
 Identities = 327/594 (55%), Positives = 421/594 (70%)

Query:    21 LTSSRNHFAALSCTSPKTTASLSSEQDVLQAVVESDGKTLPCVRTYENDLVRLSLFGAVG 80
             L   R+  + + C S  +    S+E+D+L+ V ESDGK LPCVRTYEN+  RLSL G V 
Sbjct:    26 LPQQRSSVSFVRCFSKNS----STEEDILRFVAESDGKALPCVRTYENNSARLSLVGTVA 81

Query:    81 FXXXXXXXXXXXXXXXNEHVVSGIPAMVVETVFPGPSGERATISTRLFLPASKVKEKAFK 140
             F               ++H+   +P MVVETVFPG S  +AT+STRLFLP  KVKE+A +
Sbjct:    82 FDQALTAAAADGGEAADDHLRENVPVMVVETVFPGGSDPKATVSTRLFLPTKKVKERAKR 141

Query:   141 LRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVLFRPGTERNMEDLGNQRE-VPAS 199
             LR+SLS+D+ +G  S+NILAMTFRQVV+ QLW+F+LVLF PG ER M D  N RE V  S
Sbjct:   142 LRRSLSEDLSSGDLSKNILAMTFRQVVLRQLWNFQLVLFAPGAEREMGDFENPREQVSTS 201

Query:   200 FALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVV 259
             F L+SSDERVISV+AEV+C+SALQSTE HFLD+ L K    F +W  K +RI S+D SVV
Sbjct:   202 FTLSSSDERVISVIAEVICISALQSTEKHFLDDYLGKAKFPFMKWLSKRRRIASRDCSVV 261

Query:   260 VYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTS 319
             ++KLF+DE  +N K LLE + S KE+ K    + +  WW  SA+SKLEKIGG  FS W S
Sbjct:   262 LHKLFDDE--QNTKLLLEYYQSRKENFKLADTKQRSRWWDLSANSKLEKIGGPGFSSWAS 319

Query:   320 ENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNK 379
             E +PAYRLE+D +   D+KLEGWRKS+EN+WE+LLTHSQMVGLA+ LD+Y+ED +SLP K
Sbjct:   320 EYLPAYRLEMDSTILADLKLEGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDTYSLPRK 379

Query:   380 QLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGE-KFSGE 438
             QL C V  NY NLP++K+  S LK +SVT+ASGIFL+A+SA  Q   P   K E K+ G+
Sbjct:   380 QLPCDVPGNYANLPNEKKGLSLLKFISVTMASGIFLLAVSAAAQFCLPQ--KSERKYPGK 437

Query:   439 LRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYL 498
              + +  SE      Q  D+ +L+  C  ++ ++KD + W G+I  E SIGAWIGE+P+YL
Sbjct:   438 RQEILWSESELLSHQSSDSSELDSFCGLLVNKLKDAYSWVGEITLESSIGAWIGEVPDYL 497

Query:   499 KLSHEDDSTSEGNLTAA--LEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNH 556
             K +    S  +  +T++  LE ++ D K+S QDIA+YQVVLS+EGKI+GFQPTSRV VNH
Sbjct:   498 KETSRAKSVEDHIVTSSSLLEILNEDAKASAQDIATYQVVLSSEGKIIGFQPTSRVAVNH 557

Query:   557 WAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPI 610
             WAA+PLA+E+YGG+KL PGLIEP LK H P +VV++ELLMSVN D  FAL RP+
Sbjct:   558 WAANPLARELYGGKKLKPGLIEPGLKSHPPKKVVVLELLMSVNSDRPFALVRPL 611


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      611       596   0.00084  120 3  11 22  0.40    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  326 KB (2166 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  52.34u 0.12s 52.46t   Elapsed:  00:00:02
  Total cpu time:  52.35u 0.12s 52.47t   Elapsed:  00:00:02
  Start:  Tue May 21 13:04:33 2013   End:  Tue May 21 13:04:35 2013


GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00003025001
SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (624 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 611
PF14233189 DUF4335: Domain of unknown function (DUF4335) 90.98
>PF14233 DUF4335: Domain of unknown function (DUF4335) Back     alignment and domain information
Probab=90.98  E-value=0.35  Score=46.85  Aligned_cols=71  Identities=27%  Similarity=0.309  Sum_probs=48.0

Q ss_pred             eeeeehhhhhhhhhhHhhhhccccccCCCCcccccccccccCCCCccc-----CcchhHHHHHHhhhchhHHhhhhhhhc
Q 007246          350 WEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKR-----DSSFLKILSVTLASGIFLVAISALGQR  424 (611)
Q Consensus       350 wEVLLTHsQMv~LA~iLDmY~eD~ytLP~K~ls~~v~~n~~n~s~~kk-----~~s~lk~L~~~lasg~fl~aisa~~q~  424 (611)
                      =+|-|+.+|+-+|++.||=|+.|.-|+|+.+...      ..+++...     .-..++. .+..+.|++-+++.+.+-|
T Consensus       111 ~~I~L~~~QLfDLv~aLDq~~~D~~~lp~l~~~~------~~~~~r~~~w~~~~~~~~~~-~~~~~~g~~sla~~a~~~~  183 (189)
T PF14233_consen  111 LEIDLSTSQLFDLVEALDQFFADSQTLPNLSLQL------QPPSRRYPAWLRSAAPLLQR-LGPPTVGVSSLAIAASAFF  183 (189)
T ss_pred             cEEEcChhHHHHHHHHHHHHhhcccccCCccccc------ccccccccccchhhhHHHHH-hhhhhHHHHHHHHHHHHhh
Confidence            6899999999999999999999999999887765      12222111     1122222 2233445666777777777


Q ss_pred             ccc
Q 007246          425 SSP  427 (611)
Q Consensus       425 c~P  427 (611)
                      -+|
T Consensus       184 l~p  186 (189)
T PF14233_consen  184 LLP  186 (189)
T ss_pred             cCC
Confidence            666




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query611
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 67/414 (16%), Positives = 129/414 (31%), Gaps = 142/414 (34%)

Query: 211 SVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVE 270
           + +A  VCLS     +               F W      + + +S         + ++E
Sbjct: 164 TWVALDVCLS--YKVQCKMDFK--------IF-WL----NLKNCNS--------PETVLE 200

Query: 271 NAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEID 330
             + LL   +    S      RS H                       S N+        
Sbjct: 201 MLQKLLYQIDPNWTS------RSDH-----------------------SSNIK------- 224

Query: 331 VSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSV-VTNY 389
             R + ++ E  R      +E  L    +V L ++ +    + F+     LSC + +T  
Sbjct: 225 -LRIHSIQAELRRLLKSKPYENCL----LV-LLNVQNAKAWNAFN-----LSCKILLT-- 271

Query: 390 TNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFS-GELRSLASSEIW 448
           T      R       LS    + I L            H       +  E++SL    + 
Sbjct: 272 T------RFKQVTDFLSAATTTHISLD-----------HHSMT--LTPDEVKSLLLKYLD 312

Query: 449 NALRQ-PVDAVKLEEMCVSII-KRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDS 506
              +  P + +      +SII + I+D                 +    N+  ++ +  +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRD----------------GLATWDNWKHVNCDKLT 356

Query: 507 TSEGNLTAALEKIDP-DIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASP---- 561
           T    + ++L  ++P + +     ++    V      I    PT  + +  W        
Sbjct: 357 TI---IESSLNVLEPAEYRKMFDRLS----VFPPSAHI----PTILLSL-IWFDVIKSDV 404

Query: 562 --LAKEMYGGRKLSPGLIE---PSLKIHLPNEVVLIELLMSVNPDSCFALARPI 610
             +  ++    K S  L+E       I +P+    I L + V  ++ +AL R I
Sbjct: 405 MVVVNKL---HKYS--LVEKQPKESTISIPS----IYLELKVKLENEYALHRSI 449


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00