Citrus Sinensis ID: 007246
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 611 | ||||||
| 359483503 | 624 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.975 | 0.594 | 0.0 | |
| 297740449 | 625 | unnamed protein product [Vitis vinifera] | 0.996 | 0.974 | 0.593 | 0.0 | |
| 356546067 | 603 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.978 | 0.601 | 0.0 | |
| 356533747 | 607 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.967 | 0.597 | 0.0 | |
| 255563006 | 628 | conserved hypothetical protein [Ricinus | 0.962 | 0.936 | 0.616 | 0.0 | |
| 357446797 | 614 | hypothetical protein MTR_2g014890 [Medic | 0.968 | 0.964 | 0.586 | 0.0 | |
| 449434316 | 627 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.961 | 0.571 | 0.0 | |
| 79605744 | 613 | uncharacterized protein [Arabidopsis tha | 0.954 | 0.951 | 0.572 | 0.0 | |
| 297851306 | 616 | hypothetical protein ARALYDRAFT_473074 [ | 0.924 | 0.917 | 0.595 | 0.0 | |
| 30690476 | 614 | uncharacterized protein [Arabidopsis tha | 0.954 | 0.949 | 0.571 | 0.0 |
| >gi|359483503|ref|XP_002273236.2| PREDICTED: uncharacterized protein LOC100248663 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/626 (59%), Positives = 471/626 (75%), Gaps = 17/626 (2%)
Query: 1 MAHIHVHTLFSPTFCI-PRSPLT------------SSRNHFAALSCTSPKTTASLSSEQD 47
MA IH L P PRS T + RN +SC++PK A ++EQ+
Sbjct: 1 MAFIHPPALRIPLLTFQPRSSSTRILTFFPKLLFKNPRNSLYIVSCSTPK--AIPATEQE 58
Query: 48 VLQAVVESDGKTLPCVRTYENDLVRLSLFGAVGFDQALTAAAADGGQAANEHVVSGIPAM 107
VL A+ ESD K+LP VR++ENDL RL++ GA+ +QALTAAAADGG A+EH+ SG+ AM
Sbjct: 59 VLDAIAESDEKSLPAVRSFENDLARLTMVGAIDVEQALTAAAADGGNTADEHIASGMAAM 118
Query: 108 VVETVFPGPSGERATISTRLFLPASKVKEKAFKLRKSLSKDVLNGSSSRNILAMTFRQVV 167
VVETVFPG S E +T+STRLFLPA KVKEKA +LR+S ++D L+ ++S++ILAMTFRQVV
Sbjct: 119 VVETVFPGASDEHSTVSTRLFLPARKVKEKANRLRRSFTEDFLSSTTSKDILAMTFRQVV 178
Query: 168 MHQLWSFELVLFRPGTERNMEDLGNQREVPASFALTSSDERVISVLAEVVCLSALQSTES 227
+ QLW+FELVLF PGTERNME+L + R+VPASF L+SSDE VISVLAEV+C+SALQ+TE
Sbjct: 179 LQQLWNFELVLFIPGTERNMEELQDSRKVPASFFLSSSDEGVISVLAEVICISALQTTER 238
Query: 228 HFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVENAKTLLETFNSTKESIK 287
HFL+N L +TS+ FF+WF KPK + SKDSSV++Y+LFEDEIVENAK LLE FNS K + K
Sbjct: 239 HFLNNLLGQTSNNFFKWFHKPKSVASKDSSVIMYELFEDEIVENAKNLLENFNSMKANYK 298
Query: 288 PVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEIDVSRYNDVKLEGWRKSAE 347
++ ++K+ WWT SA SKLEKIGG EFS WTSE +PAYRL+ID + VK EGW++SAE
Sbjct: 299 CIETKTKYHWWTSSAISKLEKIGGPEFSTWTSEYIPAYRLQIDPDKLKSVKFEGWKRSAE 358
Query: 348 NRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSV-VTNYTNLPSKKRDSSFLKILS 406
NRWE+LLTHSQMV LA+ILDMYYED+++LP+KQL C N+TNL KR SS LKIL+
Sbjct: 359 NRWEVLLTHSQMVALANILDMYYEDLYTLPDKQLLCGAGFANFTNLSKNKRISSLLKILT 418
Query: 407 VTLASGIFLVAISALGQRSSPHLHKGEKFSGELRSLASSEIWNALRQPVDAVKLEEMCVS 466
+++ASGIFLVAI+ LG+ P +++ K G SL SEI ++ K+E C+S
Sbjct: 419 ISIASGIFLVAINVLGRLYFPRVNEVGKGPGNQPSLLPSEINCVQHNSLETTKMEAFCIS 478
Query: 467 IIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDSTSE-GNLTAALEKIDPDIKS 525
I+K+IKD F W G+IM E S+GAW G++P YL++ + S + N TA L++ D + K+
Sbjct: 479 IVKKIKDAFGWSGEIMAESSVGAWTGDLPIYLRVDKANHSGEDISNGTALLQRSDEEKKT 538
Query: 526 SMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASPLAKEMYGGRKLSPGLIEPSLKIHL 585
S QDIASYQVVLS +G IVGFQPTSRV VN+WA +PLAKE+Y G+KLSPGL E LKI
Sbjct: 539 STQDIASYQVVLSVDGDIVGFQPTSRVAVNNWAVNPLAKELYKGKKLSPGLFETGLKIPR 598
Query: 586 PNEVVLIELLMSVNPDSCFALARPIQ 611
PNEVV+IELLMSVN D+CFALARP+Q
Sbjct: 599 PNEVVIIELLMSVNSDACFALARPVQ 624
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740449|emb|CBI30631.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356546067|ref|XP_003541453.1| PREDICTED: uncharacterized protein LOC100785118 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356533747|ref|XP_003535421.1| PREDICTED: uncharacterized protein LOC100782020 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255563006|ref|XP_002522507.1| conserved hypothetical protein [Ricinus communis] gi|223538198|gb|EEF39807.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357446797|ref|XP_003593674.1| hypothetical protein MTR_2g014890 [Medicago truncatula] gi|355482722|gb|AES63925.1| hypothetical protein MTR_2g014890 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449434316|ref|XP_004134942.1| PREDICTED: uncharacterized protein LOC101222138 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|79605744|ref|NP_973929.2| uncharacterized protein [Arabidopsis thaliana] gi|10764862|gb|AAF24552.2|AC007508_15 F1K23.23 [Arabidopsis thaliana] gi|332192867|gb|AEE30988.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297851306|ref|XP_002893534.1| hypothetical protein ARALYDRAFT_473074 [Arabidopsis lyrata subsp. lyrata] gi|297339376|gb|EFH69793.1| hypothetical protein ARALYDRAFT_473074 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|30690476|ref|NP_174175.2| uncharacterized protein [Arabidopsis thaliana] gi|28973742|gb|AAO64187.1| unknown protein [Arabidopsis thaliana] gi|30793961|gb|AAP40432.1| unknown protein [Arabidopsis thaliana] gi|110737261|dbj|BAF00578.1| hypothetical protein [Arabidopsis thaliana] gi|332192868|gb|AEE30989.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 611 | ||||||
| TAIR|locus:2018728 | 614 | AT1G28530 "AT1G28530" [Arabido | 0.952 | 0.947 | 0.550 | 1.1e-167 |
| TAIR|locus:2018728 AT1G28530 "AT1G28530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1631 (579.2 bits), Expect = 1.1e-167, P = 1.1e-167
Identities = 327/594 (55%), Positives = 421/594 (70%)
Query: 21 LTSSRNHFAALSCTSPKTTASLSSEQDVLQAVVESDGKTLPCVRTYENDLVRLSLFGAVG 80
L R+ + + C S + S+E+D+L+ V ESDGK LPCVRTYEN+ RLSL G V
Sbjct: 26 LPQQRSSVSFVRCFSKNS----STEEDILRFVAESDGKALPCVRTYENNSARLSLVGTVA 81
Query: 81 FXXXXXXXXXXXXXXXNEHVVSGIPAMVVETVFPGPSGERATISTRLFLPASKVKEKAFK 140
F ++H+ +P MVVETVFPG S +AT+STRLFLP KVKE+A +
Sbjct: 82 FDQALTAAAADGGEAADDHLRENVPVMVVETVFPGGSDPKATVSTRLFLPTKKVKERAKR 141
Query: 141 LRKSLSKDVLNGSSSRNILAMTFRQVVMHQLWSFELVLFRPGTERNMEDLGNQRE-VPAS 199
LR+SLS+D+ +G S+NILAMTFRQVV+ QLW+F+LVLF PG ER M D N RE V S
Sbjct: 142 LRRSLSEDLSSGDLSKNILAMTFRQVVLRQLWNFQLVLFAPGAEREMGDFENPREQVSTS 201
Query: 200 FALTSSDERVISVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVV 259
F L+SSDERVISV+AEV+C+SALQSTE HFLD+ L K F +W K +RI S+D SVV
Sbjct: 202 FTLSSSDERVISVIAEVICISALQSTEKHFLDDYLGKAKFPFMKWLSKRRRIASRDCSVV 261
Query: 260 VYKLFEDEIVENAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTS 319
++KLF+DE +N K LLE + S KE+ K + + WW SA+SKLEKIGG FS W S
Sbjct: 262 LHKLFDDE--QNTKLLLEYYQSRKENFKLADTKQRSRWWDLSANSKLEKIGGPGFSSWAS 319
Query: 320 ENVPAYRLEIDVSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNK 379
E +PAYRLE+D + D+KLEGWRKS+EN+WE+LLTHSQMVGLA+ LD+Y+ED +SLP K
Sbjct: 320 EYLPAYRLEMDSTILADLKLEGWRKSSENKWEVLLTHSQMVGLAEALDIYFEDTYSLPRK 379
Query: 380 QLSCSVVTNYTNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGE-KFSGE 438
QL C V NY NLP++K+ S LK +SVT+ASGIFL+A+SA Q P K E K+ G+
Sbjct: 380 QLPCDVPGNYANLPNEKKGLSLLKFISVTMASGIFLLAVSAAAQFCLPQ--KSERKYPGK 437
Query: 439 LRSLASSEIWNALRQPVDAVKLEEMCVSIIKRIKDTFDWPGDIMTEMSIGAWIGEIPNYL 498
+ + SE Q D+ +L+ C ++ ++KD + W G+I E SIGAWIGE+P+YL
Sbjct: 438 RQEILWSESELLSHQSSDSSELDSFCGLLVNKLKDAYSWVGEITLESSIGAWIGEVPDYL 497
Query: 499 KLSHEDDSTSEGNLTAA--LEKIDPDIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNH 556
K + S + +T++ LE ++ D K+S QDIA+YQVVLS+EGKI+GFQPTSRV VNH
Sbjct: 498 KETSRAKSVEDHIVTSSSLLEILNEDAKASAQDIATYQVVLSSEGKIIGFQPTSRVAVNH 557
Query: 557 WAASPLAKEMYGGRKLSPGLIEPSLKIHLPNEVVLIELLMSVNPDSCFALARPI 610
WAA+PLA+E+YGG+KL PGLIEP LK H P +VV++ELLMSVN D FAL RP+
Sbjct: 558 WAANPLARELYGGKKLKPGLIEPGLKSHPPKKVVVLELLMSVNSDRPFALVRPL 611
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 611 596 0.00084 120 3 11 22 0.40 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 623 (66 KB)
Total size of DFA: 326 KB (2166 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.34u 0.12s 52.46t Elapsed: 00:00:02
Total cpu time: 52.35u 0.12s 52.47t Elapsed: 00:00:02
Start: Tue May 21 13:04:33 2013 End: Tue May 21 13:04:35 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00003025001 | SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (624 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 611 | |||
| PF14233 | 189 | DUF4335: Domain of unknown function (DUF4335) | 90.98 |
| >PF14233 DUF4335: Domain of unknown function (DUF4335) | Back alignment and domain information |
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Probab=90.98 E-value=0.35 Score=46.85 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=48.0
Q ss_pred eeeeehhhhhhhhhhHhhhhccccccCCCCcccccccccccCCCCccc-----CcchhHHHHHHhhhchhHHhhhhhhhc
Q 007246 350 WEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSVVTNYTNLPSKKR-----DSSFLKILSVTLASGIFLVAISALGQR 424 (611)
Q Consensus 350 wEVLLTHsQMv~LA~iLDmY~eD~ytLP~K~ls~~v~~n~~n~s~~kk-----~~s~lk~L~~~lasg~fl~aisa~~q~ 424 (611)
=+|-|+.+|+-+|++.||=|+.|.-|+|+.+... ..+++... .-..++. .+..+.|++-+++.+.+-|
T Consensus 111 ~~I~L~~~QLfDLv~aLDq~~~D~~~lp~l~~~~------~~~~~r~~~w~~~~~~~~~~-~~~~~~g~~sla~~a~~~~ 183 (189)
T PF14233_consen 111 LEIDLSTSQLFDLVEALDQFFADSQTLPNLSLQL------QPPSRRYPAWLRSAAPLLQR-LGPPTVGVSSLAIAASAFF 183 (189)
T ss_pred cEEEcChhHHHHHHHHHHHHhhcccccCCccccc------ccccccccccchhhhHHHHH-hhhhhHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999887765 12222111 1122222 2233445666777777777
Q ss_pred ccc
Q 007246 425 SSP 427 (611)
Q Consensus 425 c~P 427 (611)
-+|
T Consensus 184 l~p 186 (189)
T PF14233_consen 184 LLP 186 (189)
T ss_pred cCC
Confidence 666
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 611 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 42.9 bits (100), Expect = 3e-04
Identities = 67/414 (16%), Positives = 129/414 (31%), Gaps = 142/414 (34%)
Query: 211 SVLAEVVCLSALQSTESHFLDNSLRKTSSYFFRWFQKPKRITSKDSSVVVYKLFEDEIVE 270
+ +A VCLS + F W + + +S + ++E
Sbjct: 164 TWVALDVCLS--YKVQCKMDFK--------IF-WL----NLKNCNS--------PETVLE 200
Query: 271 NAKTLLETFNSTKESIKPVKMRSKHLWWTPSAHSKLEKIGGREFSIWTSENVPAYRLEID 330
+ LL + S RS H S N+
Sbjct: 201 MLQKLLYQIDPNWTS------RSDH-----------------------SSNIK------- 224
Query: 331 VSRYNDVKLEGWRKSAENRWEILLTHSQMVGLADILDMYYEDIFSLPNKQLSCSV-VTNY 389
R + ++ E R +E L +V L ++ + + F+ LSC + +T
Sbjct: 225 -LRIHSIQAELRRLLKSKPYENCL----LV-LLNVQNAKAWNAFN-----LSCKILLT-- 271
Query: 390 TNLPSKKRDSSFLKILSVTLASGIFLVAISALGQRSSPHLHKGEKFS-GELRSLASSEIW 448
T R LS + I L H + E++SL +
Sbjct: 272 T------RFKQVTDFLSAATTTHISLD-----------HHSMT--LTPDEVKSLLLKYLD 312
Query: 449 NALRQ-PVDAVKLEEMCVSII-KRIKDTFDWPGDIMTEMSIGAWIGEIPNYLKLSHEDDS 506
+ P + + +SII + I+D + N+ ++ + +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRD----------------GLATWDNWKHVNCDKLT 356
Query: 507 TSEGNLTAALEKIDP-DIKSSMQDIASYQVVLSTEGKIVGFQPTSRVGVNHWAASP---- 561
T + ++L ++P + + ++ V I PT + + W
Sbjct: 357 TI---IESSLNVLEPAEYRKMFDRLS----VFPPSAHI----PTILLSL-IWFDVIKSDV 404
Query: 562 --LAKEMYGGRKLSPGLIE---PSLKIHLPNEVVLIELLMSVNPDSCFALARPI 610
+ ++ K S L+E I +P+ I L + V ++ +AL R I
Sbjct: 405 MVVVNKL---HKYS--LVEKQPKESTISIPS----IYLELKVKLENEYALHRSI 449
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00