Citrus Sinensis ID: 007324

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTPIEVVIYILH
ccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccccHHHccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccHHHHHHHHHHHHHHHcccHHHHHHcccccccccccHHcccccccccccccccccHHcccccccccccccccccccccHHHHccccHcccccccccccccccccccccccccccHccccccccccccccEEEcccccHHHHcHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEc
MASWLKAAEDLFEVVDRRAKLVVNELAdeqsdfqtpasngqgsqAKKIKSRIKAQRRHSADESLKINDTAREQantqaspvdvtpnkdtATLAVEKEtittgktqkngeqqqtnerdapsiplteqskdmskhdadrveipetftdldtatpngeilnendsdvhlnhppsplppkemgivnedriddagqitksadadaplkidskiqavdppvnsesslkdaDVKVETLSNKRKQqalkaddpptkeqdQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKrgqkkspeEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTPIEVVIYILH
MASWLKAAEDLFEVVDRRAKLVVNELadeqsdfqtpasngqgsqakKIKSRIKAqrrhsadeslkindtareqantqaspvdvtpnkdTATLAVEketittgktqkngeqqqtnerdapsiplteqskdmskhdaDRVEIPetftdldtatpNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKsadadaplkidskiqavdppvnsesslkdaDVKVETLSNKrkqqalkaddpptkeqDQLDEAQGLLKTtistgqskeaRLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEEraahnatkmaAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKrdaehysreeHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTPIEVVIYILH
MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQalreelasverraeeeraaHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTPIEVVIYILH
****LKAAEDLFEVVDRRAKLVVN************************************************************************************************************************************************************************************************************************************************************VCA********************************************************************************************************************************************************************************AMLEVECA**************************************************************************************YRELTDLLYYKQTQL*****************MNRLQEVQVCQRVLHSTPIEVVIYIL*
***WLKAAEDLFE************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VVIYILH
MASWLKAAEDLFEVVDRRAKLVVNELADEQS*******************************SLKINDTAR************TPNKDTATLAVEKETITTG***************APSIPLT**********ADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAV***********DADVKVETLSN********************DEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEA*****************QMQAW*****************LSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTPIEVVIYILH
***WLKAAEDLFEVVDRRAKLVVNEL********************************************************************************************************************************************************************************KIDSKIQA********SSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTPIEVVIYILH
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MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSADESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNERDAPSIPLTEQSKDMSKHDADRVEIPETFTDLDTATPNGEILNENDSDVHLNHPPSPLPPKEMGIVNEDRIDDAGQITKSADADAPLKIDSKIQAVDPPVNSESSLKDADVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLAEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMxxxxxxxxxxxxxxxxxxxxxHNATKMAAMEREVELEHRAAEASMALARIQRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSPEEANQAIQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQVCQRVLHSTPIEVVIYILH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query608 2.2.26 [Sep-21-2011]
Q8S8N9707 Golgin candidate 1 OS=Ara yes no 0.942 0.810 0.590 1e-178
Q5JLY8709 Golgin-84 OS=Oryza sativa yes no 0.616 0.528 0.709 1e-142
Q6GNT7722 Golgin subfamily A member N/A no 0.539 0.454 0.280 5e-05
B0F9L7668 Golgin candidate 2 OS=Ara no no 0.264 0.241 0.284 5e-05
>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2 Back     alignment and function desciption
 Score =  625 bits (1611), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 365/618 (59%), Positives = 445/618 (72%), Gaps = 45/618 (7%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAK VV +L++EQ+D Q PAS  +GSQ K+  S+   +++   
Sbjct: 1   MASWLKAAEDLFEVVDRRAKSVVEDLSEEQNDLQLPASGRKGSQGKRTSSK---KKKLVK 57

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKTQKNGEQQQTNE--RDA 118
           +ES    D++ +Q+    S  +V P+K + +     ET ++G      E   T+   +  
Sbjct: 58  EESSNKRDSSGDQSGPGVSQSEVPPSKSSVST---DETSSSGPVLLTREIHPTDADVQSV 114

Query: 119 PSIPLTEQSKDMSKHDADRVEIPETFTDLD---TATPNGEILNENDSDVHLNHPPSP-LP 174
            S+PL+      +K D   V   E+  D D   +   +G+I   NDS V     PSP LP
Sbjct: 115 LSLPLSVAD---TKSDDAAVVAQESIVDGDRSESKHADGDI--PNDSLVQ----PSPSLP 165

Query: 175 PKEMGIVNEDRIDDAGQITKSADADAPLK-----IDSKIQAVDPPVNSESSLKDA--DVK 227
            KE+ +V  + + DA +     + D   K     +DS + A  P VN  +  +    +VK
Sbjct: 166 DKEIEVVVSENLMDAPKNGTQRELDDSSKRDVENLDSVVHA--PSVNEGNVAQSTGDEVK 223

Query: 228 VETL---------------SNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEA 272
           V T                +N +++Q  +AD    K QDQL+EAQGLLK T+STGQSKEA
Sbjct: 224 VGTSINLEKEQEPKVPVTSTNLKREQDRRADTTSMKIQDQLEEAQGLLKATVSTGQSKEA 283

Query: 273 RLARVCAGLSSRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
           RLARVCAGLSSRLQE K+ENAQLEELL AE+EL++SYEA I+ L+++LS  KSEVTKVES
Sbjct: 284 RLARVCAGLSSRLQEIKAENAQLEELLTAEQELTKSYEASIRHLQKDLSAAKSEVTKVES 343

Query: 333 NLAEALAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALR 392
           ++ EALAAKNSEIETLVS++DALK QAAL+EG L+SLQ +MESIMRNREL ETRM+QALR
Sbjct: 344 SMVEALAAKNSEIETLVSAMDALKNQAALNEGKLSSLQGDMESIMRNRELAETRMMQALR 403

Query: 393 EELASVERRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELE 452
           EELA+ ERRAEEER+AHNATKMAAMERE ELEHRA +AS AL RIQRIADERTAK  + E
Sbjct: 404 EELATTERRAEEERSAHNATKMAAMERERELEHRAVDASTALVRIQRIADERTAKVADFE 463

Query: 453 QKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAEN 512
           QKVA+LE EC +L QELQDME R +RGQKK+P+EANQ IQ+QAWQDEV+RARQGQRDAE 
Sbjct: 464 QKVALLEAECTSLNQELQDMEVRARRGQKKAPDEANQVIQIQAWQDEVDRARQGQRDAEE 523

Query: 513 KLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKA 572
           KLS +EAE+QK+RVEMAAMKRDAEHYSR+EH ELEKRYRELTDLLYYKQTQLETMASEKA
Sbjct: 524 KLSLMEAEMQKLRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMASEKA 583

Query: 573 AAEFQLEKEMNRLQEVQV 590
           AAEFQLEKE+ RL E QV
Sbjct: 584 AAEFQLEKEVKRLHEAQV 601
Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1 Back     alignment and function description
>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis GN=golga5 PE=2 SV=1 Back     alignment and function description
>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
255546349 717 Golgin-84, putative [Ricinus communis] g 0.968 0.821 0.708 0.0
297738766 712 unnamed protein product [Vitis vinifera] 0.968 0.827 0.691 0.0
356560629702 PREDICTED: golgin candidate 1-like [Glyc 0.949 0.821 0.652 0.0
225445112694 PREDICTED: golgin candidate 1-like [Viti 0.942 0.825 0.675 0.0
356497595703 PREDICTED: golgin candidate 1-like [Glyc 0.953 0.825 0.66 0.0
449466268 709 PREDICTED: golgin candidate 1-like [Cucu 0.962 0.825 0.627 0.0
334184316 710 golgin candidate 1 [Arabidopsis thaliana 0.947 0.811 0.593 1e-178
164708702 710 putative golgin-84-like protein [Arabido 0.947 0.811 0.593 1e-178
79557632707 golgin candidate 1 [Arabidopsis thaliana 0.942 0.810 0.590 1e-176
297832160 746 hypothetical protein ARALYDRAFT_899882 [ 0.935 0.762 0.588 1e-175
>gi|255546349|ref|XP_002514234.1| Golgin-84, putative [Ricinus communis] gi|223546690|gb|EEF48188.1| Golgin-84, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/601 (70%), Positives = 485/601 (80%), Gaps = 12/601 (1%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVVNELADEQSDFQTPASNGQGSQAKKIKSRIKAQRRHSA 60
           MASWLKAAEDLFEVVDRRAKLVV+ELADE SD Q+PASNGQGSQ K  + + KAQ+R S 
Sbjct: 1   MASWLKAAEDLFEVVDRRAKLVVSELADEHSDSQSPASNGQGSQPKTARGKKKAQKRLSK 60

Query: 61  DESLKINDTAREQANTQASPVDVTPNKDTATLAVEKETITTGKT--QKNGEQQQTNERDA 118
            ES K +    E   TQ S +++  ++D A L+VE +T  T K+  Q   EQQQ  ++DA
Sbjct: 61  IESDKASSAKAEFITTQTSQLEME-SEDRAALSVEHDTAPTSKSILQVVAEQQQDTDKDA 119

Query: 119 PSIPLTEQ-SKDMSKHDADRVEIP--ETFTDLDTATPNGEILNENDSDVHLNHPPSPLPP 175
            SI   E+ + ++ KHD D VE+P      D  T+T NGEILNE   D  L HPPSPLP 
Sbjct: 120 SSIKSPERLANEVVKHDTDNVEVPVAAADADAKTSTSNGEILNEKAPDGFLEHPPSPLPA 179

Query: 176 KEMGIVNEDRID---DAGQITKSADADAPLKID---SKIQAVDPPVNSESSLKDADVKVE 229
           KE+ ++NED  D   DAG   K +DA+ PL+ D   S+   +D P+N E  LKDAD+K  
Sbjct: 180 KEIEVLNEDHQDHPIDAGVNIKLSDAEVPLETDQERSQSANIDTPINDEIVLKDADLKAN 239

Query: 230 TLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYK 289
            + N++     KAD+ P K QDQL+EAQGLLKT ISTGQSKEARLARVCAGLS+RLQEYK
Sbjct: 240 PVVNQQDHHQQKADNSPKKIQDQLEEAQGLLKTAISTGQSKEARLARVCAGLSTRLQEYK 299

Query: 290 SENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLV 349
           SENAQLEELL+AERELS+S E RIKQL+Q+LS  KSEVT+VESN+ EALAAKNSEIE LV
Sbjct: 300 SENAQLEELLIAERELSKSLETRIKQLQQDLSRSKSEVTRVESNMGEALAAKNSEIEALV 359

Query: 350 SSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQALREELASVERRAEEERAAH 409
           +SID LKKQAALSEGNLASLQ NMESIMRNRELTETRM+QALREEL+S ERRAEEERAAH
Sbjct: 360 NSIDVLKKQAALSEGNLASLQANMESIMRNRELTETRMMQALREELSSAERRAEEERAAH 419

Query: 410 NATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQEL 469
           NATKMAAMEREVELEHRA EAS ALARIQRIADERTAKA ELEQKVA+LEVECA+L QEL
Sbjct: 420 NATKMAAMEREVELEHRAVEASTALARIQRIADERTAKAAELEQKVALLEVECASLNQEL 479

Query: 470 QDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMA 529
           QDME R++RGQKKSPEEANQ IQMQAWQ+EVERARQGQRDAENKLSS EAE+QKMRVEMA
Sbjct: 480 QDMETRVRRGQKKSPEEANQVIQMQAWQEEVERARQGQRDAENKLSSTEAELQKMRVEMA 539

Query: 530 AMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQEVQ 589
           AMKRDAEHYSR+EHMELEKRYRELTDLLYYKQTQLE MASEKAAAEFQLEKE+ R+++  
Sbjct: 540 AMKRDAEHYSRQEHMELEKRYRELTDLLYYKQTQLEAMASEKAAAEFQLEKEVKRIKKXX 599

Query: 590 V 590
           +
Sbjct: 600 I 600

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738766|emb|CBI28011.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560629|ref|XP_003548593.1| PREDICTED: golgin candidate 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225445112|ref|XP_002280503.1| PREDICTED: golgin candidate 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497595|ref|XP_003517645.1| PREDICTED: golgin candidate 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449466268|ref|XP_004150848.1| PREDICTED: golgin candidate 1-like [Cucumis sativus] gi|449488127|ref|XP_004157946.1| PREDICTED: golgin candidate 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|334184316|ref|NP_001189556.1| golgin candidate 1 [Arabidopsis thaliana] gi|330251854|gb|AEC06948.1| golgin candidate 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|164708702|gb|ABY67248.1| putative golgin-84-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79557632|ref|NP_179585.3| golgin candidate 1 [Arabidopsis thaliana] gi|85681038|sp|Q8S8N9.2|GOGC1_ARATH RecName: Full=Golgin candidate 1; Short=AtGC1; AltName: Full=Golgin-84 gi|44917433|gb|AAS49041.1| At2g19950 [Arabidopsis thaliana] gi|110738790|dbj|BAF01318.1| hypothetical protein [Arabidopsis thaliana] gi|330251853|gb|AEC06947.1| golgin candidate 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297832160|ref|XP_002883962.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata] gi|297329802|gb|EFH60221.1| hypothetical protein ARALYDRAFT_899882 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
UNIPROTKB|Q6GNT7722 golga5 "Golgin subfamily A mem 0.583 0.491 0.257 3e-16
UNIPROTKB|Q8TBA6731 GOLGA5 "Golgin subfamily A mem 0.511 0.425 0.249 1.1e-14
UNIPROTKB|E2QWJ2731 GOLGA5 "Uncharacterized protei 0.822 0.683 0.210 1.3e-14
MGI|MGI:1351475729 Golga5 "golgi autoantigen, gol 0.511 0.426 0.234 1e-13
UNIPROTKB|F1SD67729 GOLGA5 "Uncharacterized protei 0.774 0.646 0.225 1.3e-13
ZFIN|ZDB-GENE-030131-9795 1336 rrbp1a "ribosome binding prote 0.860 0.391 0.226 1.9e-13
ZFIN|ZDB-GENE-040426-2749760 golga5 "golgi autoantigen, gol 0.817 0.653 0.234 2.3e-13
DICTYBASE|DDB_G0286985 1024 zipA "zipper-like domain-conta 0.613 0.364 0.189 7.5e-13
UNIPROTKB|E1C947735 GOLGA5 "Uncharacterized protei 0.526 0.435 0.230 7.6e-13
UNIPROTKB|A5D7A5732 GOLGA5 "GOLGA5 protein" [Bos t 0.511 0.424 0.234 9.7e-13
UNIPROTKB|Q6GNT7 golga5 "Golgin subfamily A member 5" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
 Score = 235 (87.8 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 98/380 (25%), Positives = 163/380 (42%)

Query:   216 NSESSLKDADVKVETLSNKRKQQALKADDPPTKE-QDQLDEAQGLLKTTISTGQSKEARL 274
             N ++S  D   +          +A+ A D      + +L EA  LLK+   T +S +   
Sbjct:   261 NGDNSKNDRTARELRAQVDDLSEAMAAKDSQLAVLKVRLQEADQLLKSRTETLESLQIEK 320

Query:   275 ARVCAGLS--SRLQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVES 332
             +R+    S  S +     +  Q E L  AE  L R  E+  KQ++ E +   S++     
Sbjct:   321 SRILQDQSEGSSIHNQALQTMQ-ERLREAESTLIREQES-YKQIQNEFATRLSKIEAERQ 378

Query:   333 NLAEA-LAAKNSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRMIQXX 391
             NLAEA + A+   +E    S D L++Q   S+  L SL+  M    +      TR++Q  
Sbjct:   379 NLAEAVILAEKKHMEEKRKS-DDLQQQLKTSKVGLDSLKQEMADYKQKA----TRILQSK 433

Query:   392 XXXXXXXXXXXXXXXX-XHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGE 450
                               H+A+ M       ELE    E  M    IQ++  +      E
Sbjct:   434 EKLINSLKEGSGIEGLDSHSASTM-------ELEEMRHERDMQREEIQKLMGQIQQLKAE 486

Query:   451 LEQKVAMLEVECATLQQELQDMEARLKRGQKKSPE-EANQAIQMQAWQDEVERARQGQRD 509
             L+        E  + +++LQD+  +    Q+   E EA    Q Q +Q   E   + +  
Sbjct:   487 LQDVETQQVSEAESAREQLQDVHEQFATQQRAKQELEAELERQKQEFQYIQEDLYKTKNT 546

Query:   510 AENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELTDLLYYKQTQLETMAS 569
              + ++   E E+QK+R ++       +  S     ELE R  +LT+ L  KQT LE +++
Sbjct:   547 LQGRIRDREDEIQKLRNQLTN-----KALSSSSQTELENRLHQLTETLIQKQTMLENLST 601

Query:   570 EKAAAEFQLEKEMNRLQEVQ 589
             EK +  +QLE+  ++L+ VQ
Sbjct:   602 EKNSLVYQLERLEHQLKNVQ 621
GO:0005794 "Golgi apparatus" evidence=ISS
GO:0007030 "Golgi organization" evidence=ISS
GO:0042803 "protein homodimerization activity" evidence=ISS
GO:0048193 "Golgi vesicle transport" evidence=ISS
UNIPROTKB|Q8TBA6 GOLGA5 "Golgin subfamily A member 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWJ2 GOLGA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1351475 Golga5 "golgi autoantigen, golgin subfamily a, 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SD67 GOLGA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9795 rrbp1a "ribosome binding protein 1 homolog a (dog)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2749 golga5 "golgi autoantigen, golgin subfamily a, 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286985 zipA "zipper-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1C947 GOLGA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7A5 GOLGA5 "GOLGA5 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5JLY8GOGA5_ORYSJNo assigned EC number0.70970.61670.5289yesno
Q8S8N9GOGC1_ARATHNo assigned EC number0.59060.94240.8104yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-10
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-07
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 8e-07
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-05
PRK09039343 PRK09039, PRK09039, hypothetical protein; Validate 3e-04
PRK09039343 PRK09039, PRK09039, hypothetical protein; Validate 5e-04
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 7e-04
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.002
pfam09726680 pfam09726, Macoilin, Transmembrane protein 0.002
COG4372 499 COG4372, COG4372, Uncharacterized protein conserve 0.003
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.004
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.004
pfam13166 713 pfam13166, AAA_13, AAA domain 0.004
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 0.004
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information 
 Score = 62.4 bits (152), Expect = 5e-10
 Identities = 82/349 (23%), Positives = 147/349 (42%), Gaps = 37/349 (10%)

Query: 225  DVKVETLSNKRKQQALKADDPPTKEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSR 284
              ++E L  K ++   K  +   K   +L +    L+  +   + +   L+R  + L   
Sbjct: 676  RREIEELEEKIEELEEKIAEL-EKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 285  LQEYKSENAQLEELLVAERELSRSYEARIKQLEQELSVYKSEVTKVESNLAEA---LAAK 341
            L   ++E  QLEE +    +     EA I++LE+ L   + E+ + E+ + E    +   
Sbjct: 735  LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794

Query: 342  NSEIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELTETRM------IQALREEL 395
              E++ L  ++D L+ +  L     A+L+  +ES+ R    TE R+      I+ L E++
Sbjct: 795  KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 396  ASVE----------RRAEEERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERT 445
             S+              E E  A    + +  E    L     E S  L  ++    E  
Sbjct: 855  ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 446  AKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEEANQAIQMQAWQDEVERARQ 505
             +  EL +K+A LE+    L+  + +++ RL      + EEA         +D+ E AR+
Sbjct: 915  RELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA--LENKIEDDEEEARR 972

Query: 506  GQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMELEKRYRELT 554
              +  ENK+  L        V +AA+         EE+ EL++RY  LT
Sbjct: 973  RLKRLENKIKELG------PVNLAAI---------EEYEELKERYDFLT 1006

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein Back     alignment and domain information
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 608
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 99.95
KOG4677554 consensus Golgi integral membrane protein [Intrace 99.93
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 98.55
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.41
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.39
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 98.25
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.24
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 98.23
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 98.23
PRK02224 880 chromosome segregation protein; Provisional 98.05
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 98.0
PRK02224 880 chromosome segregation protein; Provisional 97.98
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 97.76
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.6
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 97.59
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.57
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 97.44
PF00038312 Filament: Intermediate filament protein; InterPro: 97.39
PRK09039343 hypothetical protein; Validated 97.33
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.31
PRK04863 1486 mukB cell division protein MukB; Provisional 97.27
PRK09039343 hypothetical protein; Validated 96.94
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 96.87
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.85
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.81
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 96.8
PF00038312 Filament: Intermediate filament protein; InterPro: 96.8
PF05701522 WEMBL: Weak chloroplast movement under blue light; 96.79
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 96.78
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.61
PRK11637428 AmiB activator; Provisional 96.61
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 96.6
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.54
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 96.53
KOG0933 1174 consensus Structural maintenance of chromosome pro 96.46
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 96.44
PF05701 522 WEMBL: Weak chloroplast movement under blue light; 96.42
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.38
PF13514 1111 AAA_27: AAA domain 96.38
PRK11637 428 AmiB activator; Provisional 96.37
COG4942420 Membrane-bound metallopeptidase [Cell division and 96.25
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 96.2
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.13
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.11
KOG0994 1758 consensus Extracellular matrix glycoprotein Lamini 96.11
PF13514 1111 AAA_27: AAA domain 96.0
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 95.98
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.95
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 95.83
KOG4673961 consensus Transcription factor TMF, TATA element m 95.82
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 95.8
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 95.8
PRK03918 880 chromosome segregation protein; Provisional 95.73
PRK11281 1113 hypothetical protein; Provisional 95.69
PRK11281 1113 hypothetical protein; Provisional 95.68
PF07111739 HCR: Alpha helical coiled-coil rod protein (HCR); 95.53
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 95.52
PHA02562 562 46 endonuclease subunit; Provisional 95.45
PRK03918 880 chromosome segregation protein; Provisional 95.07
PHA02562562 46 endonuclease subunit; Provisional 94.85
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 94.79
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 94.76
PRK10698222 phage shock protein PspA; Provisional 94.68
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 94.41
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 94.12
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 94.12
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 94.06
TIGR01843 423 type_I_hlyD type I secretion membrane fusion prote 93.41
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 93.36
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 93.23
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 92.85
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 92.8
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 92.57
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 92.33
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 92.31
PRK04863 1486 mukB cell division protein MukB; Provisional 92.09
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 91.91
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 91.89
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 91.88
PF12795240 MscS_porin: Mechanosensitive ion channel porin dom 91.83
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 91.64
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 91.55
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 91.11
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 91.08
COG4942420 Membrane-bound metallopeptidase [Cell division and 90.94
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 90.8
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 90.72
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 90.72
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 90.46
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 90.38
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 90.33
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 90.31
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 90.16
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 90.05
PRK10929 1109 putative mechanosensitive channel protein; Provisi 89.76
KOG0971 1243 consensus Microtubule-associated protein dynactin 89.38
TIGR02977219 phageshock_pspA phage shock protein A. Members of 89.1
PRK09841 726 cryptic autophosphorylating protein tyrosine kinas 88.75
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 87.8
TIGR03185 650 DNA_S_dndD DNA sulfur modification protein DndD. T 87.72
PF00769 246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.0
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 86.88
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 86.85
PRK15178434 Vi polysaccharide export inner membrane protein Ve 86.52
PRK10476346 multidrug resistance protein MdtN; Provisional 86.3
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 85.07
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 84.56
TIGR02977219 phageshock_pspA phage shock protein A. Members of 83.12
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 83.04
COG3206458 GumC Uncharacterized protein involved in exopolysa 81.52
PRK11519 719 tyrosine kinase; Provisional 81.2
PF04849306 HAP1_N: HAP1 N-terminal conserved region; InterPro 80.38
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 80.31
PRK10246 1047 exonuclease subunit SbcC; Provisional 80.03
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information 
Probab=99.95  E-value=6.1e-26  Score=239.96  Aligned_cols=255  Identities=26%  Similarity=0.330  Sum_probs=204.9

Q ss_pred             hhHHHHHhcccc-----hhHHHHHHHHHHHHHHHhhHhHHHHHhhhhhhhhhhhhhh---hhHHHHHHHHHHHHHHHHHH
Q 007324          332 SNLAEALAAKNS-----EIETLVSSIDALKKQAALSEGNLASLQMNMESIMRNRELT---ETRMIQALREELASVERRAE  403 (608)
Q Consensus       332 sdlteALAAKdS-----qLavL~vrldeadq~l~~~e~~La~LQ~e~~RImqdh~~~---e~q~lqaLREeLa~AE~rL~  403 (608)
                      +++++++.++++     ++++|+++|+++++.+..+...|..++.++.+++.++..+   ..+.+.+|+++|..++.+++
T Consensus        93 ~~~~~~~~~~~~~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~  172 (511)
T PF09787_consen   93 DDLTEASSAKSSDSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK  172 (511)
T ss_pred             ccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            566777778877     9999999999999999999999999999999999999987   47788999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 007324          404 EERAAHNATKMAAMEREVELEHRAAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQ---  480 (608)
Q Consensus       404 ~Eq~ah~Atr~aamERE~elE~qlAeastAL~~~QR~~~E~k~ra~eLeqqv~~lea~~esl~QELqDyk~ka~Ril---  480 (608)
                      .+.+....+.+.++.|-.++|--.......+. +.+.|.+..++..++++++.+++..+.+.++||.+||+||.+|+   
T Consensus       173 ~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~-A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~k  251 (511)
T PF09787_consen  173 REDGNAITAVVEFLKRTLKKEIERQELEERPK-ALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSK  251 (511)
T ss_pred             hcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCH
Confidence            99999877777777777776655555555555 56789999999999999999999999999999999999999999   


Q ss_pred             --------CCCchh-HHH---HH-------HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH------------------
Q 007324          481 --------KKSPEE-ANQ---AI-------QMQAWQDEVERARQGQRDAENKLSSLEAEVQK------------------  523 (608)
Q Consensus       481 --------~gs~e~-Agq---v~-------qle~~reev~~areq~~~~e~a~qe~~ae~q~------------------  523 (608)
                              +|++.+ .+.   .+       +...+++++..++.|+......++.++.++..                  
T Consensus       252 EklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~  331 (511)
T PF09787_consen  252 EKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEP  331 (511)
T ss_pred             HHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                    212221 110   02       22556666666666663333333332222111                  


Q ss_pred             ---HHHHHHHHHHHHhhh---------------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007324          524 ---MRVEMAAMKRDAEHY---------------------------------SREEHMELEKRYRELTDLLYYKQTQLETM  567 (608)
Q Consensus       524 ---~e~El~~~Kqd~~~~---------------------------------Sr~s~~ELE~RlreLTE~LyqKQTqLEaL  567 (608)
                         -++|++.+.+++.||                                 +.++..|||+||+.|||+||+|||+||.|
T Consensus       332 ~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l  411 (511)
T PF09787_consen  332 ELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESL  411 (511)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHH
Confidence               167788888888877                                 13367899999999999999999999999


Q ss_pred             hhHHHHHHHHhHHHHHHHhh
Q 007324          568 ASEKAAAEFQLEKEMNRLQE  587 (608)
Q Consensus       568 atEKaAl~fQLER~eqq~k~  587 (608)
                      ++|||+|.|||||++.+|++
T Consensus       412 ~~ek~al~lqlErl~~~l~~  431 (511)
T PF09787_consen  412 GSEKNALRLQLERLETQLKE  431 (511)
T ss_pred             HhhhhhccccHHHHHHHHHh
Confidence            99999999999999999995

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional Back     alignment and domain information
>PRK10476 multidrug resistance protein MdtN; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK11519 tyrosine kinase; Provisional Back     alignment and domain information
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PRK10246 exonuclease subunit SbcC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-17
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-11
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-09
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 5e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-12
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 1e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-05
2zuo_A861 MVP, major vault protein; repeat domains, protein- 2e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 3e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 2e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 7e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 84.9 bits (210), Expect = 3e-17
 Identities = 61/341 (17%), Positives = 139/341 (40%), Gaps = 43/341 (12%)

Query: 248  KEQDQLDEAQGLLKTTISTGQSKEARLARVCAGLSSRLQEYKSENAQLEELLVAERELSR 307
            ++  QL E + LL+  +       A    +   L+++ QE +    ++E  +  E E S+
Sbjct: 885  QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQ 944

Query: 308  SYEARIKQLEQELSVYKSEVTKVESNLAEALAAKNSEIETLVSSIDALKKQAALSEGNLA 367
              +A  K+++Q++   + ++ + E+   +    K     T    I  ++    + E    
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK----VTADGKIKKMEDDILIMEDQNN 1000

Query: 368  SLQMNMESIMRNRELTETRMIQALREELASVERR-AEEERAAHNATKMAAMEREVELEHR 426
             L               T+  + L E ++ +    AEEE  A N TK+       + E  
Sbjct: 1001 KL---------------TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN-----KHESM 1040

Query: 427  AAEASMALARIQRIADERTAKAGELEQKVAMLEVECATLQQELQDMEARLKRGQKKSPEE 486
             +E  + L + ++   E      +LE + + L  + A LQ ++ +++A+L + ++     
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE----- 1095

Query: 487  ANQAIQMQAWQDEVERARQGQRDAENKLSSLEAEVQKMRVEMAAMKRDAEHYSREEHMEL 546
                 ++QA    +E     + +A  K+  LE+ +  ++ ++ +         +    + 
Sbjct: 1096 -----ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES--------EKAARNKA 1142

Query: 547  EKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE 587
            EK+ R+L++ L   +T+LE      A  +     +     +
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query608
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.7
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 98.3
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 98.19
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.92
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.65
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 94.24
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.96
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 93.9
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.49
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 92.85
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 91.73
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 91.22
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 90.91
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 90.85
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 88.7
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 87.4
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 87.13
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 86.75
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 85.32
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 84.03
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 83.69
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 81.76
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 81.69
3ni0_A99 Bone marrow stromal antigen 2; coiled-coil, antivi 81.29
2i1j_A575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 80.5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=98.70  E-value=0.00014  Score=64.53  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHhh
Q 007324          545 ELEKRYRELTDLLYYKQTQLETMASEKAAAEFQLEKEMNRLQE  587 (608)
Q Consensus       545 ELE~RlreLTE~LyqKQTqLEaLatEKaAl~fQLER~eqq~k~  587 (608)
                      .++..+..+..-+...+..+..+-...+.+..+++....+|.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  283 (284)
T 1c1g_A          241 FAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS  283 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3444444444444444455555555666666666666655543
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus} Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00