Citrus Sinensis ID: 007329
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 608 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M9E2 | 866 | Pentatricopeptide repeat- | yes | no | 0.863 | 0.606 | 0.688 | 0.0 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.909 | 0.576 | 0.334 | 3e-80 | |
| Q9XE98 | 729 | Pentatricopeptide repeat- | no | no | 0.879 | 0.733 | 0.338 | 9e-80 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.746 | 0.561 | 0.341 | 1e-77 | |
| Q9SS97 | 660 | Putative pentatricopeptid | no | no | 0.764 | 0.704 | 0.333 | 1e-75 | |
| Q9SN39 | 871 | Pentatricopeptide repeat- | no | no | 0.884 | 0.617 | 0.319 | 1e-75 | |
| O49619 | 804 | Pentatricopeptide repeat- | no | no | 0.733 | 0.554 | 0.358 | 7e-75 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.771 | 0.569 | 0.336 | 1e-72 | |
| O80647 | 836 | Pentatricopeptide repeat- | no | no | 0.746 | 0.543 | 0.345 | 4e-70 | |
| Q9FLZ9 | 677 | Pentatricopeptide repeat- | no | no | 0.756 | 0.679 | 0.351 | 2e-69 |
| >sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/529 (68%), Positives = 441/529 (83%)
Query: 66 RLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTM 125
+L+ LC NG LE+A+K L+SMQEL + VDED V LVRLCEWKR +EG ++S+ +M
Sbjct: 65 QLHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSM 124
Query: 126 SHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQ 185
S L V LGNAFL+MFV+FG+L AWYVFGKM +R+LFSWNVL+GGYAK G+FDEA+ LY
Sbjct: 125 SSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYH 184
Query: 186 RMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKC 245
RM WVGGVKPDVYTFPCVLRTCGG+PDL RGKEVHVHV+R+GYE D+DVVNALITMYVKC
Sbjct: 185 RMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKC 244
Query: 246 GDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI 305
GD+ ARL+FD MP+RD ISWNAMISGYFENG +GL LF MR + VDPD MTL+SVI
Sbjct: 245 GDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVI 304
Query: 306 SASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV 365
SA EL+GD +LGR++H YVI GF+ D+SVCN L +MYL+ G+ E EK+FSRME KD+V
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIV 364
Query: 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLA 425
SWTTMIS YE + LPDKA++TY+MM+ + PDEIT+A+VLSACA LG+LD G++LH+LA
Sbjct: 365 SWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLA 424
Query: 426 MRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEAL 485
++ LISY+I+AN LI+MYSKCKCIDKAL++FH IP KNVISWTSII GLRLNNR FEAL
Sbjct: 425 IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL 484
Query: 486 IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545
IF R+M + L+PN++TL + L+ACARIGALMCGKEIHAH LR GV D FLPNALLDMYV
Sbjct: 485 IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYV 544
Query: 546 RCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594
RCGRM AW+QFNS ++DV++WNILLTGY+ERGQG++ E F +M+ S+
Sbjct: 545 RCGRMNTAWSQFNSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSR 593
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 189/565 (33%), Positives = 306/565 (54%), Gaps = 12/565 (2%)
Query: 34 PKTRHFSSKNAQSVQVLNTQNTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICV 93
P+ R S + N S+ + P+ +L C +G L +A + LD + E N V
Sbjct: 24 PRVRLHCSIPTEPSCRRNPFRQSNQPVQVPSPKL--ACFDGVLTEAFQRLD-VSENNSPV 80
Query: 94 DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVR-LGNAFLSMFVKFGDLGHAWYV 152
+ A ++ LC +R +G LHS + KT + L + M+ K G L A V
Sbjct: 81 E--AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKV 138
Query: 153 FGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPD 212
F +M DR F+WN +IG Y G AL+LY M V GV + +FP +L+ C + D
Sbjct: 139 FDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNM-RVEGVPLGLSSFPALLKACAKLRD 197
Query: 213 LKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-DRISWNAMIS 271
++ G E+H +++ GY + +VNAL++MY K DL AR +FDG ++ D + WN+++S
Sbjct: 198 IRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILS 257
Query: 272 GYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMG-FS 330
Y +G+ ++ L LF M P+ T+ S ++A + KLG+E+H V+K S
Sbjct: 258 SYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHS 317
Query: 331 DDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMM 390
++ VCN LI MY G + E++ +M + DVV+W ++I Y +++ +A+E + M
Sbjct: 318 SELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDM 377
Query: 391 EAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450
A G DE+++ S+++A L NL G++LH ++ G S + + NTLIDMYSKC
Sbjct: 378 IAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLT 437
Query: 451 DKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLN-LKPNSVTLVSILSAC 509
F ++ DK++ISWT++I G N+ EAL FR + ++ + + L SIL A
Sbjct: 438 CYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRAS 497
Query: 510 ARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS-NERDVSAWN 568
+ + +++ KEIH H LR G+ D + N L+D+Y +C M A F S +DV +W
Sbjct: 498 SVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWT 556
Query: 569 ILLTGYAERGQGALAEEFFRKMIDS 593
+++ A G + A E FR+M+++
Sbjct: 557 SMISSSALNGNESEAVELFRRMVET 581
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9XE98|PP303_ARATH Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana GN=PCMP-E99 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 184/544 (33%), Positives = 293/544 (53%), Gaps = 9/544 (1%)
Query: 55 TSSI--ATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYD 112
TSS+ +TK NS +N L +G +Q L SM + D +L++ C +
Sbjct: 4 TSSVLNSTKYFNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLS 63
Query: 113 EGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYA 172
GL +H V + ++ ++++ KFG L HA VF +M +RD+ W +IG Y+
Sbjct: 64 FGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYS 123
Query: 173 KAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADV 232
+AG EA SL M + G+KP T +L GV ++ + + +H + +G++ D+
Sbjct: 124 RAGIVGEACSLVNEMRF-QGIKPGPVT---LLEMLSGVLEITQLQCLHDFAVIYGFDCDI 179
Query: 233 DVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREV 292
V+N+++ +Y KC + A+ +FD M +RD +SWN MISGY G + L L MR
Sbjct: 180 AVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGD 239
Query: 293 LVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEG 352
+ PD T + +S S + D ++GR +H ++K GF D+ + LI MYL G E
Sbjct: 240 GLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEAS 299
Query: 353 EKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412
+V + +KDVV WT MIS +KA+ + M GS IASV+++CA L
Sbjct: 300 YRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQL 359
Query: 413 GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSII 472
G+ DLG +H +R G N+LI MY+KC +DK+L +F ++ +++++SW +II
Sbjct: 360 GSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAII 419
Query: 473 LGLRLNNRSFEALIFFRKMMLNL--KPNSVTLVSILSACARIGALMCGKEIHAHALRIGV 530
G N +AL+ F +M + +S T+VS+L AC+ GAL GK IH +R +
Sbjct: 420 SGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFI 479
Query: 531 AFDGFLPNALLDMYVRCGRMKPAWNQFNS-NERDVSAWNILLTGYAERGQGALAEEFFRK 589
+ AL+DMY +CG ++ A F+S + +DV +W IL+ GY G+G +A E + +
Sbjct: 480 RPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSE 539
Query: 590 MIDS 593
+ S
Sbjct: 540 FLHS 543
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 156/457 (34%), Positives = 259/457 (56%), Gaps = 3/457 (0%)
Query: 136 FLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKP 195
+S+F ++G + A VF + + ++ ++ G+AK D+AL + RM + V+P
Sbjct: 75 LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRY-DDVEP 133
Query: 196 DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVF 255
VY F +L+ CG +L+ GKE+H +++ G+ D+ + L MY KC + AR VF
Sbjct: 134 VVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVF 193
Query: 256 DGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEK 315
D MP+RD +SWN +++GY +NG L + M E + P F+T+ SV+ A +
Sbjct: 194 DRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLIS 253
Query: 316 LGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYE 375
+G+E+HGY ++ GF V++ L+ MY G+ E ++F M ++VVSW +MI Y
Sbjct: 254 VGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYV 313
Query: 376 GSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYII 435
+ P +A+ +Q M EG P ++++ L ACA LG+L+ G +H+L++ GL +
Sbjct: 314 QNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVS 373
Query: 436 IANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-LN 494
+ N+LI MY KCK +D A +F ++ + ++SW ++ILG N R +AL +F +M
Sbjct: 374 VVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRT 433
Query: 495 LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554
+KP++ T VS+++A A + K IH +R + + F+ AL+DMY +CG + A
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493
Query: 555 NQFN-SNERDVSAWNILLTGYAERGQGALAEEFFRKM 590
F+ +ER V+ WN ++ GY G G A E F +M
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEM 530
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/474 (33%), Positives = 268/474 (56%), Gaps = 9/474 (1%)
Query: 142 KFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFP 201
KF A +FG+M R L+ WN L+ ++ ++E L + MF KPD +T P
Sbjct: 6 KFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFR-DEEKPDNFTLP 64
Query: 202 CVLRTCGGVPDLKRGKEVHVHVIR-FGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK 260
L+ CG + ++ G+ +H V + +D+ V ++LI MY+KCG ++ A +FD + K
Sbjct: 65 VALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEK 124
Query: 261 RDRISWNAMISGYFENGEYMKGLMLFI-MMREVLVDPDFMTLSSVISASELVGDEKLGRE 319
D ++W++M+SG+ +NG + + F M+ V PD +TL +++SA + + +LGR
Sbjct: 125 PDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRC 184
Query: 320 VHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVL 379
VHG+VI+ GFS+D+S+ N L+ Y +E +F + KDV+SW+T+I+CY +
Sbjct: 185 VHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGA 244
Query: 380 PDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANT 439
+A+ + M +G+ P+ T+ VL ACA +L+ G K H+LA+R GL + + ++
Sbjct: 245 AAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTA 304
Query: 440 LIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMML--NLKP 497
L+DMY KC ++A VF +IP K+V+SW ++I G LN + ++ F M+L N +P
Sbjct: 305 LVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRP 364
Query: 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQF 557
+++ +V +L +C+ +G L K H++ ++ G + F+ +L+++Y RCG + A F
Sbjct: 365 DAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVF 424
Query: 558 NSNE-RDVSAWNILLTGYAERGQGALAEEFFRKMIDS---KGNWRKLMGLFRKC 607
N +D W L+TGY G+G A E F M+ S K N + + C
Sbjct: 425 NGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSAC 478
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/544 (31%), Positives = 288/544 (52%), Gaps = 6/544 (1%)
Query: 50 LNTQNTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKR 109
+++ T + + N++L C +G+LE A+K L + +I D L ++++LC +
Sbjct: 51 VDSITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDI--DPRTLCSVLQLCADSK 108
Query: 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIG 169
+G + + + + LG+ M+ GDL A VF ++ WN+L+
Sbjct: 109 SLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMN 168
Query: 170 GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYE 229
AK+G F ++ L+++M GV+ D YTF CV ++ + + G+++H +++ G+
Sbjct: 169 ELAKSGDFSGSIGLFKKMM-SSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFG 227
Query: 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMM 289
V N+L+ Y+K + AR VFD M +RD ISWN++I+GY NG KGL +F+ M
Sbjct: 228 ERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQM 287
Query: 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNR 349
++ D T+ SV + LGR VH +K FS + CN L+ MY G+
Sbjct: 288 LVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDL 347
Query: 350 EEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSAC 409
+ + VF M + VVS+T+MI+ Y L +AV+ ++ ME EG PD T+ +VL+ C
Sbjct: 348 DSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCC 407
Query: 410 ACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWT 469
A LD G ++H+ L I ++N L+DMY+KC + +A VF ++ K++ISW
Sbjct: 408 ARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWN 467
Query: 470 SIILGLRLNNRSFEALIFFRKMMLN--LKPNSVTLVSILSACARIGALMCGKEIHAHALR 527
+II G N + EAL F ++ P+ T+ +L ACA + A G+EIH + +R
Sbjct: 468 TIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMR 527
Query: 528 IGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS-NERDVSAWNILLTGYAERGQGALAEEF 586
G D + N+L+DMY +CG + A F+ +D+ +W +++ GY G G A
Sbjct: 528 NGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIAL 587
Query: 587 FRKM 590
F +M
Sbjct: 588 FNQM 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 163/455 (35%), Positives = 255/455 (56%), Gaps = 9/455 (1%)
Query: 149 AWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG 208
A +F +M D F WNV+I G+ G + EA+ Y RM + GVK D +T+P V+++
Sbjct: 83 ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVF-AGVKADTFTYPFVIKSVA 141
Query: 209 GVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNA 268
G+ L+ GK++H VI+ G+ +DV V N+LI++Y+K G A VF+ MP+RD +SWN+
Sbjct: 142 GISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNS 201
Query: 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMG 328
MISGY G+ LMLF M + PD + S + A V K+G+E+H + ++
Sbjct: 202 MISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSR 261
Query: 329 F-SDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETY 387
+ DV V ++ MY +G E++F+ M +++V+W MI CY + A +
Sbjct: 262 IETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCF 321
Query: 388 QMM-EAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSK 446
Q M E G PD IT ++L A A L G +H AMR G + ++++ LIDMY +
Sbjct: 322 QKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETALIDMYGE 377
Query: 447 CKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSI 505
C + A +F ++ +KNVISW SII N +++ AL F+++ +L P+S T+ SI
Sbjct: 378 CGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASI 437
Query: 506 LSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ERDV 564
L A A +L G+EIHA+ ++ + + N+L+ MY CG ++ A FN +DV
Sbjct: 438 LPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDV 497
Query: 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599
+WN ++ YA G G ++ F +MI S+ N K
Sbjct: 498 VSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNK 532
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/482 (33%), Positives = 261/482 (54%), Gaps = 13/482 (2%)
Query: 115 LYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKA 174
L+ VVSK + ++ + ++++ G++ A + F + +RD+++WN++I GY +A
Sbjct: 73 LHARLVVSKQIQNVCI--SAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRA 130
Query: 175 GFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDV 234
G E + + G+ PD TFP VL+ C V D G ++H ++FG+ DV V
Sbjct: 131 GNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYV 187
Query: 235 VNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLV 294
+LI +Y + + AR++FD MP RD SWNAMISGY ++G + L L +R +
Sbjct: 188 AASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM-- 245
Query: 295 DPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEK 354
D +T+ S++SA GD G +H Y IK G ++ V N LI +Y FG + +K
Sbjct: 246 --DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQK 303
Query: 355 VFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGN 414
VF RM +D++SW ++I YE + P +A+ +Q M PD +T+ S+ S + LG+
Sbjct: 304 VFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGD 363
Query: 415 LDLGIKLHQLAMRTG-LISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIIL 473
+ + +R G + I I N ++ MY+K +D A VF+ +P+ +VISW +II
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIIS 423
Query: 474 GLRLNNRSFEALIFFRKMML--NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531
G N + EA+ + M + N T VS+L AC++ GAL G ++H L+ G+
Sbjct: 424 GYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 483
Query: 532 FDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSA-WNILLTGYAERGQGALAEEFFRKM 590
D F+ +L DMY +CGR++ A + F R S WN L+ + G G A F++M
Sbjct: 484 LDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 543
Query: 591 ID 592
+D
Sbjct: 544 LD 545
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 159/460 (34%), Positives = 249/460 (54%), Gaps = 6/460 (1%)
Query: 152 VFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVP 211
+F + D + WN +I GY +AG EAL + M G+ PD Y+F L+ C G
Sbjct: 55 IFDSVRDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSM 114
Query: 212 DLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMIS 271
D K+G +H + G E+DV + AL+ MY K DLV AR VFD M +D ++WN M+S
Sbjct: 115 DFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVS 174
Query: 272 GYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSD 331
G +NG L+LF MR VD D ++L ++I A + + R +HG VIK GF
Sbjct: 175 GLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIF 234
Query: 332 DVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMME 391
S + LI MY + + E VF + KD SW TM++ Y + ++ +E + +M
Sbjct: 235 AFS--SGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMR 292
Query: 392 AEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCID 451
+++ AS L A A +G+L GI +H A++ GLI + +A +L+ MYSKC ++
Sbjct: 293 NYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELE 352
Query: 452 KALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACA 510
A ++F I D++V+SW+++I + EA+ FR MM +++KPN+VTL S+L CA
Sbjct: 353 IAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCA 412
Query: 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNE-RDVSAWNI 569
+ A GK IH +A++ + + A++ MY +CGR PA F +D A+N
Sbjct: 413 GVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNA 472
Query: 570 LLTGYAERGQGALAEEFFR--KMIDSKGNWRKLMGLFRKC 607
L GY + G A + ++ K+ + R ++G+ + C
Sbjct: 473 LAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTC 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 264 bits (674), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 166/472 (35%), Positives = 247/472 (52%), Gaps = 12/472 (2%)
Query: 133 GNAFLSMFVKFGDLGHAWY---VFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFW 189
G+ ++ V + GH Y +F +M L S+N++I Y + G + +A+S++ RM
Sbjct: 49 GHILSTLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMV- 107
Query: 190 VGGVK--PDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGD 247
GVK PD YT+P V + G + +K G VH ++R + D V NAL+ MY+ G
Sbjct: 108 SEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGK 167
Query: 248 LVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISA 307
+ AR VFD M RD ISWN MISGY+ NG LM+F M VD D T+ S++
Sbjct: 168 VEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPV 227
Query: 308 SELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSW 367
+ D ++GR VH V + D + V N L+ MYL G +E VF RME +DV++W
Sbjct: 228 CGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITW 287
Query: 368 TTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMR 427
T MI+ Y + A+E ++M+ EG P+ +TIAS++S C ++ G LH A+R
Sbjct: 288 TCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVR 347
Query: 428 TGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIF 487
+ S III +LI MY+KCK +D VF + W++II G N +AL
Sbjct: 348 QQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGL 407
Query: 488 FRKMML-NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546
F++M +++PN TL S+L A A + L IH + + G L+ +Y +
Sbjct: 408 FKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSK 467
Query: 547 CGRMKPAWNQFNS-----NERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593
CG ++ A FN +DV W L++GY G G A + F +M+ S
Sbjct: 468 CGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRS 519
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 608 | ||||||
| 359482660 | 872 | PREDICTED: pentatricopeptide repeat-cont | 0.970 | 0.676 | 0.697 | 0.0 | |
| 297743367 | 906 | unnamed protein product [Vitis vinifera] | 0.970 | 0.651 | 0.697 | 0.0 | |
| 255553021 | 653 | pentatricopeptide repeat-containing prot | 0.975 | 0.908 | 0.641 | 0.0 | |
| 356522365 | 882 | PREDICTED: pentatricopeptide repeat-cont | 0.970 | 0.668 | 0.634 | 0.0 | |
| 449491114 | 878 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.949 | 0.657 | 0.644 | 0.0 | |
| 449436591 | 878 | PREDICTED: pentatricopeptide repeat-cont | 0.949 | 0.657 | 0.644 | 0.0 | |
| 15218216 | 866 | pentatricopeptide repeat-containing prot | 0.863 | 0.606 | 0.688 | 0.0 | |
| 297844454 | 866 | pentatricopeptide repeat-containing prot | 0.863 | 0.606 | 0.688 | 0.0 | |
| 224070863 | 805 | predicted protein [Populus trichocarpa] | 0.875 | 0.660 | 0.681 | 0.0 | |
| 297604953 | 857 | Os05g0574800 [Oryza sativa Japonica Grou | 0.863 | 0.612 | 0.537 | 1e-163 |
| >gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/598 (69%), Positives = 487/598 (81%), Gaps = 8/598 (1%)
Query: 3 MAFCAKTSQTPLRQNLRNP---KTRIPET-SFYFKPKTRHFSSKNAQSVQVLNTQNTSSI 58
MA AK L+ NL NP KT P+ +F +TR S + + VLN SSI
Sbjct: 1 MAVSAKIPAIHLQTNLPNPHHSKTHKPKPLNFSRNIQTRQISLRKHHEISVLNP---SSI 57
Query: 59 ATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLH 118
+NPNS + ELCL G LE+AL +LDSMQEL + V+E+ + L+RLCEWKR EG +H
Sbjct: 58 TAQNPNSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVH 117
Query: 119 SVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFD 178
S VSKT++ L VRLGNA LSMFV+FGDL AWYVFGKM +RDLFSWNVL+GGYAKAG+FD
Sbjct: 118 SYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFD 177
Query: 179 EALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNAL 238
EAL+LY RM WVG ++PDVYTFPCVLRTCGG+PDL RG+EVH+HVIR+G+E+DVDVVNAL
Sbjct: 178 EALNLYHRMLWVG-IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNAL 236
Query: 239 ITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF 298
ITMYVKCGD+ ARLVFD MP+RDRISWNAMISGYFEN ++GL LF MMRE VDPD
Sbjct: 237 ITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDL 296
Query: 299 MTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR 358
MT++SVISA E +GDE+LGREVHGYVIK GF +VSV N LI+M+ S G +E E VFS+
Sbjct: 297 MTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSK 356
Query: 359 MESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLG 418
ME KD+VSWT MIS YE + LP+KAVETY +ME EG +PDEITIASVLSACA LG LD G
Sbjct: 357 MEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG 416
Query: 419 IKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLN 478
I LH+ A RTGL SY+I+AN+LIDMYSKC+CIDKALEVFH+IP+KNVISWTSIILGLRLN
Sbjct: 417 IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLN 476
Query: 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPN 538
RSFEAL FF++M+L+LKPNSVTLVS+LSACARIGAL CGKEIHAHALR G+ FDGFLPN
Sbjct: 477 YRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPN 536
Query: 539 ALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGN 596
ALLDMYVRCGRM+PAWNQFNS E+DV++WNILLTGYA++G+G LA E F KMI+S N
Sbjct: 537 ALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVN 594
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/598 (69%), Positives = 487/598 (81%), Gaps = 8/598 (1%)
Query: 3 MAFCAKTSQTPLRQNLRNP---KTRIPET-SFYFKPKTRHFSSKNAQSVQVLNTQNTSSI 58
MA AK L+ NL NP KT P+ +F +TR S + + VLN SSI
Sbjct: 1 MAVSAKIPAIHLQTNLPNPHHSKTHKPKPLNFSRNIQTRQISLRKHHEISVLNP---SSI 57
Query: 59 ATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLH 118
+NPNS + ELCL G LE+AL +LDSMQEL + V+E+ + L+RLCEWKR EG +H
Sbjct: 58 TAQNPNSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVH 117
Query: 119 SVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFD 178
S VSKT++ L VRLGNA LSMFV+FGDL AWYVFGKM +RDLFSWNVL+GGYAKAG+FD
Sbjct: 118 SYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFD 177
Query: 179 EALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNAL 238
EAL+LY RM WVG ++PDVYTFPCVLRTCGG+PDL RG+EVH+HVIR+G+E+DVDVVNAL
Sbjct: 178 EALNLYHRMLWVG-IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNAL 236
Query: 239 ITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF 298
ITMYVKCGD+ ARLVFD MP+RDRISWNAMISGYFEN ++GL LF MMRE VDPD
Sbjct: 237 ITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDL 296
Query: 299 MTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR 358
MT++SVISA E +GDE+LGREVHGYVIK GF +VSV N LI+M+ S G +E E VFS+
Sbjct: 297 MTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSK 356
Query: 359 MESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLG 418
ME KD+VSWT MIS YE + LP+KAVETY +ME EG +PDEITIASVLSACA LG LD G
Sbjct: 357 MEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG 416
Query: 419 IKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLN 478
I LH+ A RTGL SY+I+AN+LIDMYSKC+CIDKALEVFH+IP+KNVISWTSIILGLRLN
Sbjct: 417 IMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLN 476
Query: 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPN 538
RSFEAL FF++M+L+LKPNSVTLVS+LSACARIGAL CGKEIHAHALR G+ FDGFLPN
Sbjct: 477 YRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPN 536
Query: 539 ALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGN 596
ALLDMYVRCGRM+PAWNQFNS E+DV++WNILLTGYA++G+G LA E F KMI+S N
Sbjct: 537 ALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVN 594
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/603 (64%), Positives = 473/603 (78%), Gaps = 10/603 (1%)
Query: 3 MAFCAKTSQTPLRQNLRNPKTRIPE-------TSFYFKP-KTRHFSSKNAQSVQVLNTQN 54
MAF AKTSQ PL + + P + + +F FKP KT FSS + + T
Sbjct: 1 MAFSAKTSQIPLHLDSKTPNSSNSQHPNFRKALAFSFKPLKTHPFSSLKSPKTSLTTTNT 60
Query: 55 TSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEG 114
+ S NS L +LCL G LE A+K+L+SMQEL I V+++ + L+RLCE KRGY EG
Sbjct: 61 SLSTTQNPTNSHLLQLCLEGKLEHAIKHLNSMQELKILVEDETFIALIRLCENKRGYTEG 120
Query: 115 LYL-HSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAK 173
Y+ +V++ ++ LSVRLGNA LSM+V+F DL +AW VFG+M +R+LFSWNVL+GGYAK
Sbjct: 121 DYVFKAVLNSLVNPLSVRLGNALLSMYVRFSDLNNAWNVFGRMGERNLFSWNVLVGGYAK 180
Query: 174 AGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVD 233
AGFFDEAL LY RM WVG +KPD+YTFPCVLR+CGG D RGKE+H HVIRFG+E DV
Sbjct: 181 AGFFDEALCLYHRMLWVG-IKPDIYTFPCVLRSCGGANDFIRGKEIHCHVIRFGFETDVS 239
Query: 234 VVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVL 293
VNALITMYVKCG + AR VFD M +RDRISWNAMISGYFENGE ++GL LF+ M E+
Sbjct: 240 AVNALITMYVKCGCVGSARTVFDKMLQRDRISWNAMISGYFENGECVEGLNLFLQMLELS 299
Query: 294 VDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGE 353
VDPD MT++SVISA EL+GD++LGRE+HGYV++ G+ +DVSV + LI+MY S G +E E
Sbjct: 300 VDPDLMTMTSVISACELLGDDRLGREIHGYVVRTGYGNDVSVHSLLIQMYASLGYWKEAE 359
Query: 354 KVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG 413
KVFS E +DVVSWT MIS YEG+++ DKA+ETY+ ME G +PDEITIA VLSACA LG
Sbjct: 360 KVFSETECRDVVSWTAMISGYEGNLMHDKALETYKNMELAGIVPDEITIACVLSACASLG 419
Query: 414 NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIIL 473
LDLG++LH+LA R GL+S++I+AN+LIDMYSKCKCIDKALEVFH I DKNVISWTSIIL
Sbjct: 420 QLDLGMRLHELANRMGLMSFVIVANSLIDMYSKCKCIDKALEVFHCIQDKNVISWTSIIL 479
Query: 474 GLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD 533
GLR+NNRSFEAL FFRKM NLKPNS+TL+S+LSACARIGALMCGKEIHAHAL+ + ++
Sbjct: 480 GLRINNRSFEALSFFRKMKRNLKPNSITLISVLSACARIGALMCGKEIHAHALKTAMVYE 539
Query: 534 GFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593
GFLPNA+LDMYVRCG++ A NQFN + DV+AWNIL+ GYAE+GQGA+A E F KMI+S
Sbjct: 540 GFLPNAILDMYVRCGKLGLALNQFNLYKEDVAAWNILMRGYAEQGQGAMAVELFHKMIES 599
Query: 594 KGN 596
K N
Sbjct: 600 KVN 602
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/604 (63%), Positives = 473/604 (78%), Gaps = 14/604 (2%)
Query: 3 MAFCAKTSQTPLRQNLRNP-----------KTRIPETSFYFKPKTRHFSSKNAQSVQVLN 51
MA AK S + LR +P ++ +F T H + A+ + V N
Sbjct: 1 MAAFAKPSHSQLRAQRDHPLLPSTSTSTSSNFKLKTFTFSHNLHTLHPPFRKAKHICVSN 60
Query: 52 TQNTSSIAT--KNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKR 109
+ T++ + NPNS + +LCL G+L++A+ YLDSM EL I V++DA V L+RLCEWKR
Sbjct: 61 SATTTTSLSSNHNPNSHIYQLCLLGNLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKR 120
Query: 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIG 169
EG ++S VS +MSHLS++LGNA LSMFV+FG+L AWYVFG+M R+LFSWNVL+G
Sbjct: 121 ARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVG 180
Query: 170 GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYE 229
GYAKAG FDEAL LY RM WVG VKPDVYTFPCVLRTCGG+P+L RG+E+HVHVIR+G+E
Sbjct: 181 GYAKAGLFDEALDLYHRMLWVG-VKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFE 239
Query: 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMM 289
+DVDVVNALITMYVKCGD+ ARLVFD MP RDRISWNAMISGYFENG ++GL LF MM
Sbjct: 240 SDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMM 299
Query: 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNR 349
+ VDPD MT++SVI+A EL+GD++LGR++HGYV++ F D S+ N LI MY S G
Sbjct: 300 IKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLI 359
Query: 350 EEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSAC 409
EE E VFSR E +D+VSWT MIS YE ++P KA+ETY+MMEAEG MPDEITIA VLSAC
Sbjct: 360 EEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSAC 419
Query: 410 ACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWT 469
+CL NLD+G+ LH++A + GL+SY I+AN+LIDMY+KCKCIDKALE+FH +KN++SWT
Sbjct: 420 SCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWT 479
Query: 470 SIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG 529
SIILGLR+NNR FEAL FFR+M+ LKPNSVTLV +LSACARIGAL CGKEIHAHALR G
Sbjct: 480 SIILGLRINNRCFEALFFFREMIRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTG 539
Query: 530 VAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRK 589
V+FDGF+PNA+LDMYVRCGRM+ AW QF S + +V++WNILLTGYAERG+GA A E F++
Sbjct: 540 VSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDHEVTSWNILLTGYAERGKGAHATELFQR 599
Query: 590 MIDS 593
M++S
Sbjct: 600 MVES 603
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/579 (64%), Positives = 459/579 (79%), Gaps = 2/579 (0%)
Query: 15 RQNLRNPKTRIPET-SFYFKPKTRHFSSKNAQSVQVLNTQNTSSIATKNPNSRLNELCLN 73
R N + P P+T SF +T + + Q + V+ + S + N L ELCL
Sbjct: 16 RSNPQVPNNHNPKTLSFSKNLQTHKHTLRKTQEISVVGAAVSHSAIDQTQNLELRELCLQ 75
Query: 74 GSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLG 133
G+LEQA+K L+SM EL I V+EDA + L+RLCEW+R DEG ++ +VS + S L VRLG
Sbjct: 76 GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135
Query: 134 NAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGV 193
NA LSMFV+FG+L AWYVFGKM +RD+FSWNVL+GGYAKAG FDEAL+LY RM W +
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW-AEI 194
Query: 194 KPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARL 253
+P+VYTFP VL+TC GV D+ RGKE+H HVIRFG+E+DVDV NALITMYVKCGD+ AR+
Sbjct: 195 RPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARM 254
Query: 254 VFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGD 313
+FD MPKRDRISWNAMISGYFENG ++GL LF MMRE+ VDPD +T+++V SA EL+ +
Sbjct: 255 LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314
Query: 314 EKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISC 373
E+LGR VHGYV+K F D+S+ N LI+MY S G EE E VFSRMESKDVVSWT MI+
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374
Query: 374 YEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY 433
LP KAVETY+MME EG +PDEIT+ SVLSACAC+G+LDLGI+LH++A++TGL+S+
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSH 434
Query: 434 IIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMML 493
+I++N+LIDMYSKCKC+D ALEVF I KNV+SWTS+ILGLR+NNRSFEAL+FFR+M
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE 494
Query: 494 NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPA 553
++KPNSVTL+S+LSACARIGALM GKEIHAHALR GV FDGFLPNA+LDMYVRCGR PA
Sbjct: 495 SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPA 554
Query: 554 WNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMID 592
NQFNS ++DV+AWNILLTGYA++GQ LA E F KM++
Sbjct: 555 LNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/579 (64%), Positives = 459/579 (79%), Gaps = 2/579 (0%)
Query: 15 RQNLRNPKTRIPET-SFYFKPKTRHFSSKNAQSVQVLNTQNTSSIATKNPNSRLNELCLN 73
R N + P P+T SF +T + + Q + V+ + S + N L ELCL
Sbjct: 16 RSNPQVPNNHNPKTLSFSKNLQTHKHTLRKTQEISVVGAAVSHSAIDQTQNLELRELCLQ 75
Query: 74 GSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLG 133
G+LEQA+K L+SM EL I V+EDA + L+RLCEW+R DEG ++ +VS + S L VRLG
Sbjct: 76 GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135
Query: 134 NAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGV 193
NA LSMFV+FG+L AWYVFGKM +RD+FSWNVL+GGYAKAG FDEAL+LY RM W +
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW-AEI 194
Query: 194 KPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARL 253
+P+VYTFP VL+TC GV D+ RGKE+H HVIRFG+E+DVDV NALITMYVKCGD+ AR+
Sbjct: 195 RPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARM 254
Query: 254 VFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGD 313
+FD MPKRDRISWNAMISGYFENG ++GL LF MMRE+ VDPD +T+++V SA EL+ +
Sbjct: 255 LFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314
Query: 314 EKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISC 373
E+LGR VHGYV+K F D+S+ N LI+MY S G EE E VFSRMESKDVVSWT MI+
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374
Query: 374 YEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY 433
LP KAVETY+MME EG +PDEIT+ SVLSACAC+G+LDLGI+LH++A++TGL+S+
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSH 434
Query: 434 IIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMML 493
+I++N+LIDMYSKCKC+D ALEVF I KNV+SWTS+ILGLR+NNRSFEAL+FFR+M
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE 494
Query: 494 NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPA 553
++KPNSVTL+S+LSACARIGALM GKEIHAHALR GV FDGFLPNA+LDMYVRCGR PA
Sbjct: 495 SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPA 554
Query: 554 WNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMID 592
NQFNS ++DV+AWNILLTGYA++GQ LA E F KM++
Sbjct: 555 LNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g15510, chloroplastic; Flags: Precursor gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana] gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana] gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/529 (68%), Positives = 441/529 (83%)
Query: 66 RLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTM 125
+L+ LC NG LE+A+K L+SMQEL + VDED V LVRLCEWKR +EG ++S+ +M
Sbjct: 65 QLHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSM 124
Query: 126 SHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQ 185
S L V LGNAFL+MFV+FG+L AWYVFGKM +R+LFSWNVL+GGYAK G+FDEA+ LY
Sbjct: 125 SSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYH 184
Query: 186 RMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKC 245
RM WVGGVKPDVYTFPCVLRTCGG+PDL RGKEVHVHV+R+GYE D+DVVNALITMYVKC
Sbjct: 185 RMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKC 244
Query: 246 GDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI 305
GD+ ARL+FD MP+RD ISWNAMISGYFENG +GL LF MR + VDPD MTL+SVI
Sbjct: 245 GDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVI 304
Query: 306 SASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV 365
SA EL+GD +LGR++H YVI GF+ D+SVCN L +MYL+ G+ E EK+FSRME KD+V
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIV 364
Query: 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLA 425
SWTTMIS YE + LPDKA++TY+MM+ + PDEIT+A+VLSACA LG+LD G++LH+LA
Sbjct: 365 SWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLA 424
Query: 426 MRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEAL 485
++ LISY+I+AN LI+MYSKCKCIDKAL++FH IP KNVISWTSII GLRLNNR FEAL
Sbjct: 425 IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL 484
Query: 486 IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545
IF R+M + L+PN++TL + L+ACARIGALMCGKEIHAH LR GV D FLPNALLDMYV
Sbjct: 485 IFLRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYV 544
Query: 546 RCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594
RCGRM AW+QFNS ++DV++WNILLTGY+ERGQG++ E F +M+ S+
Sbjct: 545 RCGRMNTAWSQFNSQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSR 593
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/529 (68%), Positives = 443/529 (83%)
Query: 66 RLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTM 125
+L+ LC NG LE+A+K L+SMQEL + VDED V LVRLCEWKR ++EG ++SV +M
Sbjct: 65 QLHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSM 124
Query: 126 SHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQ 185
+ LSV LGNAFL+MFV+FG+L AWYVFGKM +R+LFSWNVL+GGYAK G+FDEA+ LY
Sbjct: 125 NSLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYH 184
Query: 186 RMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKC 245
RM WVGGVKPDVYTFPCVLRTCGG+PDL RG+EVHVHV+R+GYE D+DVVNALITMYVKC
Sbjct: 185 RMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKC 244
Query: 246 GDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI 305
GD+ ARL+FD MP+RD ISWNAMISGYFENG +GL LF MR + VDPD MTL+SVI
Sbjct: 245 GDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVI 304
Query: 306 SASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV 365
SA EL+GD +LGR++H YVI GF+ D+SVCN L +MYL G+ E EK+FSRM+ KD+V
Sbjct: 305 SACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIV 364
Query: 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLA 425
SWTTMIS YE + LP+KA++TY+MM+ + PDEIT+A+VLSACA LG+LD G++LH+LA
Sbjct: 365 SWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLA 424
Query: 426 MRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEAL 485
++ LISY+I+AN LI+MYSKCKCIDKAL++FH IP KNVISWTSII GLRLNNR FEAL
Sbjct: 425 IKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL 484
Query: 486 IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545
IFFR+M + L+PN++TL + L+ACARIGALMCGKEIHAH LR GV D FLPNALLDMYV
Sbjct: 485 IFFRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYV 544
Query: 546 RCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594
RCGRM AWNQFNS ++DVS+WNILLTGY+ERGQG++ E F +M+ ++
Sbjct: 545 RCGRMNIAWNQFNSQKKDVSSWNILLTGYSERGQGSVVVELFDRMVKAR 593
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa] gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/534 (68%), Positives = 449/534 (84%), Gaps = 2/534 (0%)
Query: 64 NSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYL-HSVVS 122
NSRL +LCL+G+LEQALK+L SMQE+ I V+ED V L+RLCE KRGY EG Y+ +V+S
Sbjct: 2 NSRLLQLCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLS 61
Query: 123 KTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALS 182
++ LSVRLGNA LSMFV+FGD+G+AW VFG+M +RDLFSWNVL+GGY KAGFFDEAL
Sbjct: 62 SLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALC 121
Query: 183 LYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMY 242
LY R+ W G++PDVYTFP VLR+C G DL RG+EVH HV+RF ++ DVDVVNALITMY
Sbjct: 122 LYHRILW-AGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMY 180
Query: 243 VKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLS 302
VKCGD+V AR++FD MP RDRISWNAMISGYFEN E ++GL LF MRE+ +DPD MT++
Sbjct: 181 VKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMT 240
Query: 303 SVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESK 362
SVISA EL+GDE+LG ++H YV++ + ++SV N LI+MYLS G+ +E E VFS ME +
Sbjct: 241 SVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECR 300
Query: 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLH 422
DVVSWTT+IS ++LPDKA+ETY+ ME G+MPDE+TIASVLSACA LG LD+G+KLH
Sbjct: 301 DVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLH 360
Query: 423 QLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSF 482
+LA RTG I Y+++AN+LIDMYSKCK I+KALE+FHQIPDK+VISWTS+I GLR+NNR F
Sbjct: 361 ELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCF 420
Query: 483 EALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLD 542
EALIFFRKM+L KPNSVTL+S LSACAR+GALMCGKEIHAHAL+ G+ FDGFLPNA+LD
Sbjct: 421 EALIFFRKMILKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILD 480
Query: 543 MYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGN 596
+YVRCGRM+ A NQFN NE+DV AWNILLTGYA++G+GA+ E F++M++S+ N
Sbjct: 481 LYVRCGRMRTALNQFNLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEIN 534
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group] gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/530 (53%), Positives = 379/530 (71%), Gaps = 5/530 (0%)
Query: 64 NSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSK 123
++ L LC +G L QAL L+S E DE A V L RLCEW+R D G+ +
Sbjct: 68 SAALRALCSHGQLAQALWLLESSPEPP---DEGAYVALFRLCEWRRAVDAGMRACARADA 124
Query: 124 TMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSL 183
+RLGNA LSM V+FG++ HAW VF KM +RD+FSWNV++GGY K GF +EAL L
Sbjct: 125 EHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDL 184
Query: 184 YQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYV 243
Y RM W G++PDVYTFPCVLRTCGG+PD + G+EVH HV+RFG+ +VDV+NAL+TMY
Sbjct: 185 YYRMLW-AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYA 243
Query: 244 KCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSS 303
KCGD+V AR VFDGM D ISWNAMI+G+FEN E GL LF+ M E V P+ MT++S
Sbjct: 244 KCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITS 303
Query: 304 VISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD 363
V AS ++ + +E+HG+ +K GF+ DV+ CN LI+MY S G + K+FSRME+KD
Sbjct: 304 VTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKD 363
Query: 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQ 423
+SWT MIS YE + PDKA+E Y +ME PD++TIAS L+ACACLG LD+GIKLH+
Sbjct: 364 AMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHE 423
Query: 424 LAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFE 483
LA G I Y+++AN L++MY+K K IDKA+EVF + +K+V+SW+S+I G N+RSFE
Sbjct: 424 LAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFE 483
Query: 484 ALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDM 543
AL +FR M+ ++KPNSVT ++ LSACA GAL GKEIHA+ LR G+ +G++PNALLD+
Sbjct: 484 ALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDL 543
Query: 544 YVRCGRMKPAWNQFN-SNERDVSAWNILLTGYAERGQGALAEEFFRKMID 592
YV+CG+ AW QF+ +E+DV +WNI+L+G+ G G +A F +M++
Sbjct: 544 YVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVE 593
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 608 | ||||||
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.925 | 0.650 | 0.662 | 1.9e-209 | |
| TAIR|locus:2134842 | 729 | AT4G04370 [Arabidopsis thalian | 0.879 | 0.733 | 0.338 | 2.7e-77 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.745 | 0.559 | 0.342 | 3.1e-74 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.896 | 0.625 | 0.321 | 6.5e-74 | |
| TAIR|locus:2131631 | 804 | AT4G35130 "AT4G35130" [Arabido | 0.733 | 0.554 | 0.358 | 2e-72 | |
| TAIR|locus:2098901 | 783 | AT3G61170 [Arabidopsis thalian | 0.705 | 0.547 | 0.337 | 7.6e-72 | |
| TAIR|locus:2039817 | 836 | AT2G39620 "AT2G39620" [Arabido | 0.796 | 0.578 | 0.344 | 3.3e-70 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.771 | 0.569 | 0.336 | 2.4e-69 | |
| TAIR|locus:2122551 | 834 | AT4G39530 [Arabidopsis thalian | 0.876 | 0.639 | 0.298 | 5.6e-68 | |
| TAIR|locus:2175653 | 677 | AT5G39350 "AT5G39350" [Arabido | 0.773 | 0.694 | 0.355 | 2.4e-67 |
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2025 (717.9 bits), Expect = 1.9e-209, P = 1.9e-209
Identities = 375/566 (66%), Positives = 460/566 (81%)
Query: 29 SFYFKPKTRHFSSKNAQSVQVLNTQNTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQE 88
+FY+ R + +Q + VL++ SS +T NS+L+ LC NG LE+A+K L+SMQE
Sbjct: 31 NFYWNFGIRRLFLRKSQGLSVLSS---SSSSTHFSNSQLHGLCANGKLEEAMKLLNSMQE 87
Query: 89 LNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGH 148
L + VDED V LVRLCEWKR +EG ++S+ +MS L V LGNAFL+MFV+FG+L
Sbjct: 88 LRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVD 147
Query: 149 AWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG 208
AWYVFGKM +R+LFSWNVL+GGYAK G+FDEA+ LY RM WVGGVKPDVYTFPCVLRTCG
Sbjct: 148 AWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCG 207
Query: 209 GVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNA 268
G+PDL RGKEVHVHV+R+GYE D+DVVNALITMYVKCGD+ ARL+FD MP+RD ISWNA
Sbjct: 208 GIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNA 267
Query: 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMG 328
MISGYFENG +GL LF MR + VDPD MTL+SVISA EL+GD +LGR++H YVI G
Sbjct: 268 MISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG 327
Query: 329 FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQ 388
F+ D+SVCN L +MYL+ G+ E EK+FSRME KD+VSWTTMIS YE + LPDKA++TY+
Sbjct: 328 FAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYR 387
Query: 389 MMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK 448
MM+ + PDEIT+A+VLSACA LG+LD G++LH+LA++ LISY+I+AN LI+MYSKCK
Sbjct: 388 MMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCK 447
Query: 449 CIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA 508
CIDKAL++FH IP KNVISWTSII GLRLNNR FEALIF R+M + L+PN++TL + L+A
Sbjct: 448 CIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMTLQPNAITLTAALAA 507
Query: 509 CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWN 568
CARIGALMCGKEIHAH LR GV D FLPNALLDMYVRCGRM AW+QFNS ++DV++WN
Sbjct: 508 CARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKKDVTSWN 567
Query: 569 ILLTGYAERGQGALAEEFFRKMIDSK 594
ILLTGY+ERGQG++ E F +M+ S+
Sbjct: 568 ILLTGYSERGQGSMVVELFDRMVKSR 593
|
|
| TAIR|locus:2134842 AT4G04370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 778 (278.9 bits), Expect = 2.7e-77, P = 2.7e-77
Identities = 184/544 (33%), Positives = 293/544 (53%)
Query: 55 TSSI--ATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYD 112
TSS+ +TK NS +N L +G +Q L SM + D +L++ C +
Sbjct: 4 TSSVLNSTKYFNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLS 63
Query: 113 EGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYA 172
GL +H V + ++ ++++ KFG L HA VF +M +RD+ W +IG Y+
Sbjct: 64 FGLSIHQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYS 123
Query: 173 KAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADV 232
+AG EA SL M + G +KP T +L GV ++ + + +H + +G++ D+
Sbjct: 124 RAGIVGEACSLVNEMRFQG-IKPGPVT---LLEMLSGVLEITQLQCLHDFAVIYGFDCDI 179
Query: 233 DVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREV 292
V+N+++ +Y KC + A+ +FD M +RD +SWN MISGY G + L L MR
Sbjct: 180 AVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGD 239
Query: 293 LVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEG 352
+ PD T + +S S + D ++GR +H ++K GF D+ + LI MYL G E
Sbjct: 240 GLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEAS 299
Query: 353 EKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412
+V + +KDVV WT MIS +KA+ + M GS IASV+++CA L
Sbjct: 300 YRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQL 359
Query: 413 GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSII 472
G+ DLG +H +R G N+LI MY+KC +DK+L +F ++ +++++SW +II
Sbjct: 360 GSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFERMNERDLVSWNAII 419
Query: 473 LGLRLNNRSFEALIFFRKMMLNL--KPNSVTLVSILSACARIGALMCGKEIHAHALRIGV 530
G N +AL+ F +M + +S T+VS+L AC+ GAL GK IH +R +
Sbjct: 420 SGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFI 479
Query: 531 AFDGFLPNALLDMYVRCGRMKPAWNQFNS-NERDVSAWNILLTGYAERGQGALAEEFFRK 589
+ AL+DMY +CG ++ A F+S + +DV +W IL+ GY G+G +A E + +
Sbjct: 480 RPCSLVDTALVDMYSKCGYLEAAQRCFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSE 539
Query: 590 MIDS 593
+ S
Sbjct: 540 FLHS 543
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 156/456 (34%), Positives = 259/456 (56%)
Query: 137 LSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPD 196
+S+F ++G + A VF + + ++ ++ G+AK D+AL + RM + V+P
Sbjct: 76 VSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRY-DDVEPV 134
Query: 197 VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFD 256
VY F +L+ CG +L+ GKE+H +++ G+ D+ + L MY KC + AR VFD
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD 194
Query: 257 GMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKL 316
MP+RD +SWN +++GY +NG L + M E + P F+T+ SV+ A + +
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254
Query: 317 GREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEG 376
G+E+HGY ++ GF V++ L+ MY G+ E ++F M ++VVSW +MI Y
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314
Query: 377 SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIII 436
+ P +A+ +Q M EG P ++++ L ACA LG+L+ G +H+L++ GL + +
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSV 374
Query: 437 ANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLN-L 495
N+LI MY KCK +D A +F ++ + ++SW ++ILG N R +AL +F +M +
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV 434
Query: 496 KPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555
KP++ T VS+++A A + K IH +R + + F+ AL+DMY +CG + A
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARL 494
Query: 556 QFNS-NERDVSAWNILLTGYAERGQGALAEEFFRKM 590
F+ +ER V+ WN ++ GY G G A E F +M
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEM 530
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 180/560 (32%), Positives = 301/560 (53%)
Query: 39 FSSKNAQSVQ-VLNTQNTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDA 97
F+ + ++V +++ T + + N++L C +G+LE A+K L + +I D
Sbjct: 39 FNRASLRTVSDCVDSITTFDRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDI--DPRT 96
Query: 98 LVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKM- 156
L ++++LC + +G + + + + LG+ M+ GDL A VF ++
Sbjct: 97 LCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVK 156
Query: 157 CDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRG 216
++ LF WN+L+ AK+G F ++ L+++M GV+ D YTF CV ++ + + G
Sbjct: 157 IEKALF-WNILMNELAKSGDFSGSIGLFKKMM-SSGVEMDSYTFSCVSKSFSSLRSVHGG 214
Query: 217 KEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFEN 276
+++H +++ G+ V N+L+ Y+K + AR VFD M +RD ISWN++I+GY N
Sbjct: 215 EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 274
Query: 277 GEYMKGLMLFIMMREVLVDPDFMTLSSVISA---SELVGDEKLGREVHGYVIKMGFSDDV 333
G KGL +F+ M ++ D T+ SV + S L+ LGR VH +K FS +
Sbjct: 275 GLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLIS---LGRAVHSIGVKACFSRED 331
Query: 334 SVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAE 393
CN L+ MY G+ + + VF M + VVS+T+MI+ Y L +AV+ ++ ME E
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 394 GSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKA 453
G PD T+ +VL+ CA LD G ++H+ L I ++N L+DMY+KC + +A
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451
Query: 454 LEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM--LNLKPNSVTLVSILSACAR 511
VF ++ K++ISW +II G N + EAL F ++ P+ T+ +L ACA
Sbjct: 452 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 511
Query: 512 IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS-NERDVSAWNIL 570
+ A G+EIH + +R G D + N+L+DMY +CG + A F+ +D+ +W ++
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVM 571
Query: 571 LTGYAERGQGALAEEFFRKM 590
+ GY G G A F +M
Sbjct: 572 IAGYGMHGFGKEAIALFNQM 591
|
|
| TAIR|locus:2131631 AT4G35130 "AT4G35130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 163/455 (35%), Positives = 255/455 (56%)
Query: 149 AWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG 208
A +F +M D F WNV+I G+ G + EA+ Y RM + G VK D +T+P V+++
Sbjct: 83 ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAG-VKADTFTYPFVIKSVA 141
Query: 209 GVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNA 268
G+ L+ GK++H VI+ G+ +DV V N+LI++Y+K G A VF+ MP+RD +SWN+
Sbjct: 142 GISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNS 201
Query: 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMG 328
MISGY G+ LMLF M + PD + S + A V K+G+E+H + ++
Sbjct: 202 MISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSR 261
Query: 329 F-SDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETY 387
+ DV V ++ MY +G E++F+ M +++V+W MI CY + A +
Sbjct: 262 IETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCF 321
Query: 388 QMM-EAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSK 446
Q M E G PD IT ++L A A L G +H AMR G + ++++ LIDMY +
Sbjct: 322 QKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETALIDMYGE 377
Query: 447 CKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSI 505
C + A +F ++ +KNVISW SII N +++ AL F+++ +L P+S T+ SI
Sbjct: 378 CGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASI 437
Query: 506 LSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNE-RDV 564
L A A +L G+EIHA+ ++ + + N+L+ MY CG ++ A FN +DV
Sbjct: 438 LPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDV 497
Query: 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599
+WN ++ YA G G ++ F +MI S+ N K
Sbjct: 498 VSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNK 532
|
|
| TAIR|locus:2098901 AT3G61170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 148/438 (33%), Positives = 240/438 (54%)
Query: 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKE 218
++ SWN LI GY K+G EA +L+ M G+KP+ YT VLR C + L RG++
Sbjct: 88 KNTISWNALISGYCKSGSKVEAFNLFWEM-QSDGIKPNEYTLGSVLRMCTSLVLLLRGEQ 146
Query: 219 VHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP-KRDRISWNAMISGYFENG 277
+H H I+ G++ DV+VVN L+ MY +C + A +F+ M +++ ++W +M++GY +NG
Sbjct: 147 IHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNG 206
Query: 278 EYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCN 337
K + F +R + T SV++A V ++G +VH ++K GF ++ V +
Sbjct: 207 FAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQS 266
Query: 338 PLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMI-SCYEGSVLPDKAVETYQMMEAEGSM 396
LI MY E + ME DVVSW +MI C ++ + A+ + M
Sbjct: 267 ALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGE-ALSMFGRMHERDMK 325
Query: 397 PDEITIASVLSACACLGNLDLGI--KLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKAL 454
D+ TI S+L+ C L ++ I H L ++TG +Y ++ N L+DMY+K +D AL
Sbjct: 326 IDDFTIPSILN-CFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSAL 384
Query: 455 EVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLN-LKPNSVTLVSILSACARIG 513
+VF + +K+VISWT+++ G N EAL F M + + P+ + S+LSA A +
Sbjct: 385 KVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELT 444
Query: 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNE-RDVSAWNILLT 572
L G+++H + ++ G + N+L+ MY +CG ++ A FNS E RD+ W L+
Sbjct: 445 LLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIV 504
Query: 573 GYAERGQGALAEEFFRKM 590
GYA+ G A+ +F M
Sbjct: 505 GYAKNGLLEDAQRYFDSM 522
|
|
| TAIR|locus:2039817 AT2G39620 "AT2G39620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 172/500 (34%), Positives = 267/500 (53%)
Query: 115 LYLHS--VVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYA 172
L +H +VS H +L NA+ S+F + DL +F + D + WN +I GY
Sbjct: 22 LQVHGSLIVSGLKPHN--QLINAY-SLFQR-QDLSRV--IFDSVRDPGVVLWNSMIRGYT 75
Query: 173 KAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADV 232
+AG EAL + M G+ PD Y+F L+ C G D K+G +H + G E+DV
Sbjct: 76 RAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDV 135
Query: 233 DVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREV 292
+ AL+ MY K DLV AR VFD M +D ++WN M+SG +NG L+LF MR
Sbjct: 136 YIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSC 195
Query: 293 LVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEG 352
VD D ++L ++I A + + R +HG VIK GF S + LI MY + +
Sbjct: 196 CVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIFAFS--SGLIDMYCNCADLYAA 253
Query: 353 EKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412
E VF + KD SW TM++ Y + ++ +E + +M +++ AS L A A +
Sbjct: 254 ESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYV 313
Query: 413 GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSII 472
G+L GI +H A++ GLI + +A +L+ MYSKC ++ A ++F I D++V+SW+++I
Sbjct: 314 GDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMI 373
Query: 473 LGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531
+ EA+ FR MM +++KPN+VTL S+L CA + A GK IH +A++ +
Sbjct: 374 ASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIE 433
Query: 532 FDGFLPNALLDMYVRCGRMKPAWNQFNSNE-RDVSAWNILLTGYAERGQGALAEEFFRKM 590
+ A++ MY +CGR PA F +D A+N L GY + G A + ++ M
Sbjct: 434 SELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNM 493
Query: 591 IDSKG---NWRKLMGLFRKC 607
G + R ++G+ + C
Sbjct: 494 -KLHGVCPDSRTMVGMLQTC 512
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 162/482 (33%), Positives = 261/482 (54%)
Query: 115 LYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKA 174
L+ VVSK + ++ + ++++ G++ A + F + +RD+++WN++I GY +A
Sbjct: 73 LHARLVVSKQIQNVCISA--KLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRA 130
Query: 175 GFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDV 234
G E + + G+ PD TFP VL+ C V D G ++H ++FG+ DV V
Sbjct: 131 GNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYV 187
Query: 235 VNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLV 294
+LI +Y + + AR++FD MP RD SWNAMISGY ++G + L L +R +
Sbjct: 188 AASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM-- 245
Query: 295 DPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEK 354
D +T+ S++SA GD G +H Y IK G ++ V N LI +Y FG + +K
Sbjct: 246 --DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQK 303
Query: 355 VFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGN 414
VF RM +D++SW ++I YE + P +A+ +Q M PD +T+ S+ S + LG+
Sbjct: 304 VFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGD 363
Query: 415 LDLGIKLHQLAMRTG-LISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIIL 473
+ + +R G + I I N ++ MY+K +D A VF+ +P+ +VISW +II
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIIS 423
Query: 474 GLRLNNRSFEALIFFRKMMLN--LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531
G N + EA+ + M + N T VS+L AC++ GAL G ++H L+ G+
Sbjct: 424 GYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY 483
Query: 532 FDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSA-WNILLTGYAERGQGALAEEFFRKM 590
D F+ +L DMY +CGR++ A + F R S WN L+ + G G A F++M
Sbjct: 484 LDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM 543
Query: 591 ID 592
+D
Sbjct: 544 LD 545
|
|
| TAIR|locus:2122551 AT4G39530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 163/546 (29%), Positives = 279/546 (51%)
Query: 73 NGSLEQALK-YLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLY--LHSVVSKTMSHLS 129
+G E++L +L+ + +E L + ++ C G + L S + K+
Sbjct: 123 HGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRD 182
Query: 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFW 189
V +G + ++K G++ +A VF + ++ +W +I G K G +L L+ ++
Sbjct: 183 VYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM- 241
Query: 190 VGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLV 249
V PD Y VL C +P L+ GK++H H++R+G E D ++N LI YVKCG ++
Sbjct: 242 EDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVI 301
Query: 250 RARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASE 309
A +F+GMP ++ ISW ++SGY +N + + + LF M + + PD SS++++
Sbjct: 302 AAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361
Query: 310 LVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTT 369
+ G +VH Y IK +D V N LI MY + KVF + DVV +
Sbjct: 362 SLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNA 421
Query: 370 MISCYE--GSVLP-DKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAM 426
MI Y G+ +A+ ++ M P +T S+L A A L +L L ++H L
Sbjct: 422 MIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMF 481
Query: 427 RTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALI 486
+ GL I + LID+YS C C+ + VF ++ K+++ W S+ G + + EAL
Sbjct: 482 KYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALN 541
Query: 487 FFRKMMLNL-KPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545
F ++ L+ +P+ T ++++A + ++ G+E H L+ G+ + ++ NALLDMY
Sbjct: 542 LFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYA 601
Query: 546 RCGRMKPAWNQFNSN-ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKG---NWRKLM 601
+CG + A F+S RDV WN +++ YA G+G A + KM+ S+G N+ +
Sbjct: 602 KCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMM-SEGIEPNYITFV 660
Query: 602 GLFRKC 607
G+ C
Sbjct: 661 GVLSAC 666
|
|
| TAIR|locus:2175653 AT5G39350 "AT5G39350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 175/492 (35%), Positives = 258/492 (52%)
Query: 121 VSKTMS-HLSV----RLGNAFLS-MFVKFGDLGHAWY---VFGKMCDRDLFSWNVLIGGY 171
+SKT + H V R+ LS + V + GH Y +F +M L S+N++I Y
Sbjct: 31 ISKTKALHCHVITGGRVSGHILSTLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMY 90
Query: 172 AKAGFFDEALSLYQRMFWVGGVK--PDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYE 229
+ G + +A+S++ RM GVK PD YT+P V + G + +K G VH ++R +
Sbjct: 91 VREGLYHDAISVFIRMV-SEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFG 149
Query: 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMM 289
D V NAL+ MY+ G + AR VFD M RD ISWN MISGY+ NG LM+F M
Sbjct: 150 RDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWM 209
Query: 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNR 349
VD D T+ S++ + D ++GR VH V + D + V N L+ MYL G
Sbjct: 210 VNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRM 269
Query: 350 EEGEKVFSRMESKDVVSWTTMISCY--EGSVLPDKAVETYQMMEAEGSMPDEITIASVLS 407
+E VF RME +DV++WT MI+ Y +G V + A+E ++M+ EG P+ +TIAS++S
Sbjct: 270 DEARFVFDRMERRDVITWTCMINGYTEDGDV--ENALELCRLMQFEGVRPNAVTIASLVS 327
Query: 408 ACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVIS 467
C ++ G LH A+R + S III +LI MY+KCK +D VF +
Sbjct: 328 VCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGP 387
Query: 468 WTSIILGLRLNNRSFEALIFFRKMML-NLKPNSVTLVSILSACARIGALMCGKEIHAHAL 526
W++II G N +AL F++M +++PN TL S+L A A + L IH +
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLT 447
Query: 527 RIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS-----NERDVSAWNILLTGYAERGQGA 581
+ G L+ +Y +CG ++ A FN +DV W L++GY G G
Sbjct: 448 KTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGH 507
Query: 582 LAEEFFRKMIDS 593
A + F +M+ S
Sbjct: 508 NALQVFMEMVRS 519
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M9E2 | PPR45_ARATH | No assigned EC number | 0.6880 | 0.8634 | 0.6062 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 608 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-73 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-61 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-52 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-49 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-24 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 956 bits (2472), Expect = 0.0
Identities = 397/579 (68%), Positives = 467/579 (80%), Gaps = 15/579 (2%)
Query: 18 LRNPKTRIPETSFYFKPKTRHFSSKNAQSVQVLNTQNTSSIATKNPNSRLNELCLNGSLE 77
N +P +F+ + ++R S + SS +T + NS+L LC +G LE
Sbjct: 23 APNV---LPYWNFHGRKRSRGLSVAAS-----------SSSSTHDSNSQLRALCSHGQLE 68
Query: 78 QALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFL 137
QALK L+SMQEL + VDEDA V L RLCEWKR +EG + S + L VRLGNA L
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 138 SMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDV 197
SMFV+FG+L HAWYVFGKM +RDLFSWNVL+GGYAKAG+FDEAL LY RM W G V+PDV
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDV 187
Query: 198 YTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDG 257
YTFPCVLRTCGG+PDL RG+EVH HV+RFG+E DVDVVNALITMYVKCGD+V ARLVFD
Sbjct: 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 258 MPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLG 317
MP+RD ISWNAMISGYFENGE ++GL LF MRE+ VDPD MT++SVISA EL+GDE+LG
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
Query: 318 REVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGS 377
RE+HGYV+K GF+ DVSVCN LI+MYLS G+ E EKVFSRME+KD VSWT MIS YE +
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 378 VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIA 437
LPDKA+ETY +ME + PDEITIASVLSACACLG+LD+G+KLH+LA R GLISY+++A
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 438 NTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKP 497
N LI+MYSKCKCIDKALEVFH IP+K+VISWTSII GLRLNNR FEALIFFR+M+L LKP
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487
Query: 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQF 557
NSVTL++ LSACARIGALMCGKEIHAH LR G+ FDGFLPNALLD+YVRCGRM AWNQF
Sbjct: 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547
Query: 558 NSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGN 596
NS+E+DV +WNILLTGY G+G++A E F +M++S N
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 4e-73
Identities = 162/520 (31%), Positives = 264/520 (50%), Gaps = 39/520 (7%)
Query: 74 GSLEQALKYLDSMQELNICVDEDALVNLVRLC----EWKRGYDEGLYLHSVVSKTMSHLS 129
G ++AL M + D ++R C + RG + +H+ V + L
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE----VHAHVVRFGFELD 221
Query: 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFW 189
V + NA ++M+VK GD+ A VF +M RD SWN +I GY + G E L L+ M
Sbjct: 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281
Query: 190 VGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLV 249
+ V PD+ T V+ C + D + G+E+H +V++ G+ DV V N+LI MY+ G
Sbjct: 282 LS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 250 RARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASE 309
A VF M +D +SW AMISGY +NG K L + +M + V PD +T++SV+SA
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400
Query: 310 LVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTT 369
+GD +G ++H + G V V N LI+MY ++ +VF + KDV+SWT+
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460
Query: 370 MIS-------CYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLH 422
+I+ C+E A+ ++ M P+ +T+ + LSACA +G L G ++H
Sbjct: 461 IIAGLRLNNRCFE-------ALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIH 512
Query: 423 QLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSF 482
+RTG+ + N L+D+Y +C ++ A F+ +K+V+SW ++ G + +
Sbjct: 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGS 571
Query: 483 EALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCGKEI-HAHALRIGVAFDGFLPN-- 538
A+ F +M+ + P+ VT +S+L AC+R G + G E H+ + + PN
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT-----PNLK 626
Query: 539 ---ALLDMYVRCGRMKPAWNQFNSN--ERDVSAWNILLTG 573
++D+ R G++ A+N N D + W LL
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 2e-61
Identities = 110/355 (30%), Positives = 178/355 (50%), Gaps = 1/355 (0%)
Query: 168 IGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG 227
I G EAL L++ + T+ ++ C + ++ K V+ HV G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 228 YEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFI 287
+E D ++N ++ M+VKCG L+ AR +FD MP+R+ SW +I G + G Y + LF
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 288 MMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFG 347
M E D + T ++ AS +G + G+++H V+K G D V LI MY G
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 348 NREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLS 407
+ E+ VF M K V+W +M++ Y ++A+ Y M G D+ T + ++
Sbjct: 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 408 ACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVIS 467
+ L L+ + H +RTG I+ L+D+YSK ++ A VF ++P KN+IS
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS 393
Query: 468 WTSIILGLRLNNRSFEALIFFRKMML-NLKPNSVTLVSILSACARIGALMCGKEI 521
W ++I G + R +A+ F +M+ + PN VT +++LSAC G G EI
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 2e-52
Identities = 106/315 (33%), Positives = 163/315 (51%), Gaps = 16/315 (5%)
Query: 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIG 169
G++ Y+ N L M VK G L A +F +M +R+L SW +IG
Sbjct: 153 GFEPDQYMM---------------NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197
Query: 170 GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYE 229
G AG + EA +L+ R W G + TF +LR G+ + G+++H V++ G
Sbjct: 198 GLVDAGNYREAFALF-REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256
Query: 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMM 289
D V ALI MY KCGD+ AR VFDGMP++ ++WN+M++GY +G + L L+ M
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316
Query: 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNR 349
R+ V D T S +I + + ++ H +I+ GF D+ L+ +Y +G
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376
Query: 350 EEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSAC 409
E+ VF RM K+++SW +I+ Y KAVE ++ M AEG P+ +T +VLSAC
Sbjct: 377 EDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 410 ACLGNLDLGIKLHQL 424
G + G ++ Q
Sbjct: 437 RYSGLSEQGWEIFQS 451
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 2e-49
Identities = 125/430 (29%), Positives = 209/430 (48%), Gaps = 6/430 (1%)
Query: 73 NGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRL 132
NG + L+ +M+EL++ D + +++ CE G +H V KT + V +
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 133 GNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGG 192
N+ + M++ G G A VF +M +D SW +I GY K G D+AL Y +
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY-ALMEQDN 384
Query: 193 VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRAR 252
V PD T VL C + DL G ++H R G + V V NALI MY KC + +A
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 253 LVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVG 312
VF +P++D ISW ++I+G N + L+ F M + + P+ +TL + +SA +G
Sbjct: 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIG 503
Query: 313 DEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMIS 372
G+E+H +V++ G D + N L+ +Y+ G F+ E KDVVSW +++
Sbjct: 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILLT 562
Query: 373 CYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKL-HQLAMRTGLI 431
Y AVE + M G PDE+T S+L AC+ G + G++ H + + +
Sbjct: 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622
Query: 432 SYIIIANTLIDMYSKCKCIDKALEVFHQIP-DKNVISWTSIILGLRLNNRSFEALIFFRK 490
+ ++D+ + + +A +++P + W +++ R+ +R E +
Sbjct: 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI-HRHVELGELAAQ 681
Query: 491 MMLNLKPNSV 500
+ L PNSV
Sbjct: 682 HIFELDPNSV 691
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 2e-43
Identities = 83/274 (30%), Positives = 143/274 (52%), Gaps = 2/274 (0%)
Query: 320 VHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVL 379
V+ +V GF D + N ++ M++ G + ++F M +++ SW T+I +
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204
Query: 380 PDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANT 439
+A ++ M +GS + T +L A A LG+ G +LH ++TG++ ++
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 440 LIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLN-LKPN 498
LIDMYSKC I+ A VF +P+K ++W S++ G L+ S EAL + +M + + +
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324
Query: 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFN 558
T ++ +R+ L K+ HA +R G D AL+D+Y + GRM+ A N F+
Sbjct: 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384
Query: 559 S-NERDVSAWNILLTGYAERGQGALAEEFFRKMI 591
+++ +WN L+ GY G+G A E F +MI
Sbjct: 385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 3e-24
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 5/217 (2%)
Query: 381 DKAVETYQMMEAEGS--MPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIAN 438
+A+E ++++EA +P T +++ AC L ++ ++ +G + N
Sbjct: 104 REALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162
Query: 439 TLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLK-P 497
++ M+ KC + A +F ++P++N+ SW +II GL EA FR+M +
Sbjct: 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222
Query: 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQF 557
T V +L A A +G+ G+++H L+ GV D F+ AL+DMY +CG ++ A F
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 558 NS-NERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593
+ E+ AWN +L GYA G A + +M DS
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 8e-13
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 1/156 (0%)
Query: 64 NSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSK 123
NS L L+G E+AL M++ + +D+ ++R+ + H+ + +
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353
Query: 124 TMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSL 183
T L + A + ++ K+G + A VF +M ++L SWN LI GY G +A+ +
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413
Query: 184 YQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219
++RM GV P+ TF VL C ++G E+
Sbjct: 414 FERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 85/379 (22%), Positives = 148/379 (39%), Gaps = 74/379 (19%)
Query: 192 GVKPDVYTFPCVLRTCGGVPDLKRGK-----EVHVHVIRFGYEADVDVVNALITMYVKCG 246
G+K D + ++ TC K GK EV ++ G EA+V ALI + G
Sbjct: 467 GLKADCKLYTTLISTCA-----KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521
Query: 247 DLVRARLVFDGMP----KRDRISWNAMISGYFENGEYMKGLMLFIMMREVL--VDPDFMT 300
+ +A + M K DR+ +NA+IS ++G + + M+ +DPD +T
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 301 LSSVISASELVGDEKLGREV----HGYVIKMGFSD----DVSVCNPLIKMYLSFGNREEG 352
+ +++ A G +EV H Y IK G + V+ C+ G+ +
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCS-------QKGDWDFA 633
Query: 353 EKVFSRMESKDV----VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSA 408
++ M+ K V V ++ ++ + DKA E Q +G ++ +S++ A
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
Query: 409 CACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISW 468
C+ N ++L++ L + N LI + + KALEV ++
Sbjct: 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR------ 747
Query: 469 TSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528
L L PN++T +L A R G ++ + A
Sbjct: 748 ------------------------LGLCPNTITYSILLVASERKDDADVGLDLLSQAKE- 782
Query: 529 GVAFDGFLPNALLDMYVRC 547
DG PN ++ RC
Sbjct: 783 ----DGIKPNLVM---CRC 794
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 6e-08
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTF 200
D+ ++N LI GY K G +EAL L+ M G+KP+VYT+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMK-KRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 362 KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACA 410
DVV++ T+I Y ++A++ + M+ G P+ T + ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 162 FSWNVLIGGYAKAGFFDEALSLYQRM 187
++N LI GY KAG +EAL L++ M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 64/289 (22%), Positives = 123/289 (42%), Gaps = 15/289 (5%)
Query: 167 LIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF 226
LI G A+AG +A Y M VKPD F ++ CG + R +V +
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMR-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
Query: 227 GYEADVD--VVNALITMYVKCGDLVRARLVFDGMPKRDRIS-----WNAMISGYFENGEY 279
+ D D V AL+ G + RA+ V+ + + + I + ++ + G++
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN-IKGTPEVYTIAVNSCSQKGDW 630
Query: 280 MKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPL 339
L ++ M++ V PD + S+++ + GD E+ K G + L
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 340 IKMYLSFGNREEGEKVFSRMES---KDVVSWTT--MISCYEGSVLPDKAVETYQMMEAEG 394
+ + N ++ +++ ++S + VS + + EG+ LP KA+E M+ G
Sbjct: 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP-KALEVLSEMKRLG 749
Query: 395 SMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443
P+ IT + +L A + D+G+ L A G+ +++ + +
Sbjct: 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISA 307
D +++N +I GY + G+ + L LF M++ + P+ T S +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDV 197
++N LI G KAG +EAL L++ M G++PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 463 KNVISWTSIILGLRLNNRSFEALIFFRKM-MLNLKPNSVTLVSILSACAR 511
+V+++ ++I G + EAL F +M +KPN T ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 155 KMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRM 187
K D+ ++N LI G +AG DEA+ L M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 233 DVV--NALITMYVKCGDLVRARLVFDGMPKR----DRISWNAMISGY 273
DVV N LI Y K G + A +F+ M KR + +++ +I G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 8e-04
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 332 DVSVCNPLIKMYLSFGNREEGEKVFSRMESK----DVVSWTTMISCY 374
DV N LI Y G EE K+F+ M+ + +V +++ +I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 134 NAFLSMFVKFGDLGHAWYVFGKMCDR----DLFSWNVLIGGYAK 173
N + + K G + A +F +M R +++++++LI G K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 264 ISWNAMISGYFENGEYMKGLMLFIMMRE 291
+++N++ISGY + G+ + L LF M+E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 608 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.52 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.2 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.19 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.19 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.17 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.14 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.1 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.03 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.02 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.0 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.98 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.96 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.96 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.91 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.87 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.81 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.76 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.75 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.65 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.6 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.51 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.49 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.45 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.44 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.39 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.38 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.38 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.3 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.23 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.22 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.2 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.19 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.17 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.14 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.91 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.86 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.68 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.66 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.65 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.65 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.59 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.58 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.54 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.53 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.5 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.5 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.47 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.46 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.45 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.45 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.45 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.42 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.41 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.38 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.37 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.37 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.33 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.31 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.3 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.28 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.22 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.15 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.15 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.12 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.07 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.05 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.05 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.03 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.0 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.96 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.95 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.93 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.93 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.89 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.85 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.82 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.81 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.79 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.78 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.73 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.73 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.68 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.67 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.65 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.52 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.52 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.5 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.43 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.43 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.17 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.1 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.05 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.94 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.91 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.84 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.8 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.78 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.73 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.73 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.71 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.66 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.64 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.57 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.42 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.41 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.28 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.26 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.01 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.87 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.85 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.75 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.75 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.72 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.67 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.62 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.6 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.47 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.44 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.44 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.39 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.23 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.03 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.02 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.93 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.72 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.65 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.59 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.56 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 93.38 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.3 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.08 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.94 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.77 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.68 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.44 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.43 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.35 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.31 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.25 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.23 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.97 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.66 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.6 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.56 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.32 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.23 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.05 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.88 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 90.84 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 90.8 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.5 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.37 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.08 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.04 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.81 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.29 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 89.15 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.88 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.84 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 88.72 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.65 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 88.62 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.43 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.41 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.38 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.28 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.17 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.16 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 88.13 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.88 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 87.66 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.64 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 87.41 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 87.38 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.22 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.85 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.78 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.42 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.26 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.76 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.74 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.51 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 85.12 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.07 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.47 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.18 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.41 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 83.41 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 83.17 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.12 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.02 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.9 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.84 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.65 | |
| PF11663 | 140 | Toxin_YhaV: Toxin with endonuclease activity YhaV; | 82.24 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.16 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 82.09 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 81.98 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.64 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.7 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.61 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.33 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.04 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-85 Score=705.74 Aligned_cols=551 Identities=71% Similarity=1.215 Sum_probs=540.6
Q ss_pred CCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHH
Q 007329 57 SIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAF 136 (608)
Q Consensus 57 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 136 (608)
+.+...+|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.++.|.+++..+.+.++.++..++|++
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 33445599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhH
Q 007329 137 LSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRG 216 (608)
Q Consensus 137 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 216 (608)
+.+|++.|+++.|+++|++|++||..+||.+|.+|++.|++++|+++|++|.+.| +.||..||+.++++|+..++++.+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhH
Confidence 9999999999999999999999999999999999999999999999999999887 999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007329 217 KEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP 296 (608)
Q Consensus 217 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (608)
.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|...|+.|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHc
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEG 376 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 376 (608)
|..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+||.+|.+|++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK 366 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 007329 377 SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEV 456 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 456 (608)
.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccH
Q 007329 457 FHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFL 536 (608)
Q Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 536 (608)
|++|.++|+.+|+++|.+|++.|+.++|+++|++|..++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..+
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch--hhhhcccC
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL--MGLFRKCQ 608 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~~ac~ 608 (608)
+++|+++|+++|++++|.++|+.+.+|.++|+++|.+|.+.|+.++|.++|++|.+.|+.||.+ ..++.+|.
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 77888874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-82 Score=682.02 Aligned_cols=545 Identities=29% Similarity=0.445 Sum_probs=527.0
Q ss_pred hhhhcCCCCCcc-hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcc
Q 007329 51 NTQNTSSIATKN-PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLS 129 (608)
Q Consensus 51 ~~~~~~~~~~~~-~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 129 (608)
..++.++.++.. ||.+|.+|++.|++++|+++|++|...|+.||..+|+.++++|+..+++..+.+++..+.+.|..||
T Consensus 142 ~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 142 YVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred HHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 445667767666 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcC
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGG 209 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 209 (608)
..++|.|+.+|+++|++++|.++|++|+++|..+||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACEL 300 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999887 99999999999999999
Q ss_pred CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 210 VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMM 289 (608)
Q Consensus 210 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 289 (608)
.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+||.+|.+|++.|++++|+++|++|
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHH
Q 007329 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTT 369 (608)
Q Consensus 290 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 369 (608)
.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+++|++.|++++|.++|++|.++|.++|+.
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~ 460 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKC 449 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (608)
+|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 99999999999999999999986 59999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-H
Q 007329 450 IDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCGKEIHAHAL-R 527 (608)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~ 527 (608)
+++|.++|+.+ .+|+.+||++|.+|+++|+.++|+++|++|. .|+.||..||+.++.+|.+.|++++|.++|+.|. +
T Consensus 540 ~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 540 MNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 99999999999 8999999999999999999999999999999 8999999999999999999999999999999999 7
Q ss_pred hCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 528 IGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 528 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.|+.|+..+|++++++|++.|++++|.+++++| +||..+|++|+.+|..+|+.+.+....+++.+ +.|++.
T Consensus 619 ~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~ 691 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV 691 (857)
T ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc
Confidence 899999999999999999999999999999999 99999999999998877777777777777765 366654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-72 Score=591.28 Aligned_cols=470 Identities=27% Similarity=0.430 Sum_probs=455.7
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhcC-CCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHh
Q 007329 62 NPNSRLNELCLNGSLEQALKYLDSMQELN-ICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMF 140 (608)
Q Consensus 62 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (608)
.|+.+|..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+||.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 59999999999999999999999998764 78999999999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHH
Q 007329 141 VKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVH 220 (608)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 220 (608)
++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|+..|..+.+.+++
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 9999999999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhH
Q 007329 221 VHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMT 300 (608)
Q Consensus 221 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 300 (608)
..+.+.|+.+|..+|+.|+++|+++|++++|.++|++|.++|+++||.+|.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCc
Q 007329 301 LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLP 380 (608)
Q Consensus 301 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 380 (608)
|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-hCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 381 DKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMR-TGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 69999999999999999999999999999999
Q ss_pred CC-CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC
Q 007329 460 IP-DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD 533 (608)
Q Consensus 460 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 533 (608)
|. .|+..+|++++.+|..+|+.+.|..+++++. +..| +..+|..++..|++.|++++|.+++++|.+.|+...
T Consensus 488 ~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~-~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 488 APFKPTVNMWAALLTACRIHKNLELGRLAAEKLY-GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh-CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 97 6899999999999999999999999999987 5555 567999999999999999999999999999998643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-70 Score=578.13 Aligned_cols=507 Identities=17% Similarity=0.180 Sum_probs=432.6
Q ss_pred CCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcC-CcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHH
Q 007329 91 ICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMS-HLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIG 169 (608)
Q Consensus 91 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 169 (608)
..++...|..++..|.+.|++++|.++|++|.+.++ .++..+++.++..|.+.|.+++|..+|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345667778888888888888888888888888775 4566777788888888888888888888888888888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 007329 170 GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLV 249 (608)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 249 (608)
+|++.|+++.|.++|++|.+.| +.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 8888888888888888888777 888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHccCCC----CCHhHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCChhHHHHHHHHHhhcCChhhHHHHHHH
Q 007329 250 RARLVFDGMPK----RDRISWNAMISGYFENGEYMKGLMLFIMMRE--VLVDPDFMTLSSVISASELVGDEKLGREVHGY 323 (608)
Q Consensus 250 ~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 323 (608)
+|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888853 5888888888888888888888888888875 57888888888888888888888888888888
Q ss_pred HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCH
Q 007329 324 VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDE 399 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 399 (608)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 88888888888888888888888888888888888875 78888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC----CCCcccHHHHHHHH
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP----DKNVISWTSIILGL 475 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~ 475 (608)
.+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|. .||..+|++++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888876 47888888888888
Q ss_pred HhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhc-----------------------cCcHHHHHHHHHHHHHhCCC
Q 007329 476 RLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACAR-----------------------IGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~-----------------------~~~~~~a~~~~~~~~~~~~~ 531 (608)
++.|+.++|.+++.+|. .|+.||..+|+.++..|.+ .+..++|..+|++|++.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 88888888888888888 7888888888888765432 12346799999999999999
Q ss_pred CCccHHHHHHHHhHhcCCHHHHHHHHHhc-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 532 FDGFLPNALLDMYVRCGRMKPAWNQFNSN-----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
||..+|+.++.++++.+..+.+..+++.+ .|+..+|++|+.++.+. .++|..++++|.+.|+.|+-.
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999988 56789999999998432 478999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-68 Score=560.65 Aligned_cols=493 Identities=17% Similarity=0.193 Sum_probs=452.7
Q ss_pred cchHHHHHHHHhCCChHHHHHHHHHHhhcCC-CCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHH
Q 007329 61 KNPNSRLNELCLNGSLEQALKYLDSMQELNI-CVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSM 139 (608)
Q Consensus 61 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (608)
..+..++..+++.|++++|+++|++|.+.|+ .++...++.++..|.+.|.+++|..++..|.. |+..+|+.++.+
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a 446 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSV 446 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHH
Confidence 3388999999999999999999999999886 45777788889999999999999999888754 899999999999
Q ss_pred hhhcCChhhHHHHHcccC----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhh
Q 007329 140 FVKFGDLGHAWYVFGKMC----DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKR 215 (608)
Q Consensus 140 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 215 (608)
|++.|+++.|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999994 4899999999999999999999999999999887 99999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC------CCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 216 GKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP------KRDRISWNAMISGYFENGEYMKGLMLFIMM 289 (608)
Q Consensus 216 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 289 (608)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985 368999999999999999999999999999
Q ss_pred HHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC----CChh
Q 007329 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES----KDVV 365 (608)
Q Consensus 290 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~ 365 (608)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975 7899
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHccCC----CCCcccHHHHHHHHHh-----------------------CCCchHHHHHHHHhH-hCCCC
Q 007329 446 KCKCIDKALEVFHQIP----DKNVISWTSIILGLRL-----------------------NNRSFEALIFFRKMM-LNLKP 497 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~-----------------------~~~~~~A~~~~~~m~-~~~~p 497 (608)
+.|++++|.++|++|. .||..+|++++..|.+ .+..++|+.+|++|. .|+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 9999999999999987 4788999998865432 122467999999999 89999
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|..||+.++.++...+..+.+..+++.+...+..|+..+|++||+++++. .++|..++++|
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 99999999988888899999999999998888899999999999998432 46899999999
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-67 Score=552.00 Aligned_cols=441 Identities=28% Similarity=0.419 Sum_probs=427.9
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHH
Q 007329 158 DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNA 237 (608)
Q Consensus 158 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 237 (608)
..+..+|+.+|.++.+.|++++|+++|+.|...+++.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 35677899999999999999999999999998766889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhH
Q 007329 238 LITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLG 317 (608)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 317 (608)
++++|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC
Q 007329 318 REVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMP 397 (608)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 397 (608)
.+++..+.+.|+.+|..+|+.|+++|+++|++++|.++|++|.++|+++||.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHh
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRL 477 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 477 (608)
|..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++|+++|+++|++++|.++|++|.++|+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH-hCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 478 NNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCGKEIHAHALR-IGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
+|+.++|+++|++|. .|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999 89999999999999999999999999999999985 6999999999999999999999999999
Q ss_pred HHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 556 QFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 556 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+++++ .|+..+|++|+.+|..+|+++.|..+++++.+ +.|+.+
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~ 528 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKL 528 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCC
Confidence 99999 89999999999999999999999988888864 466644
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=308.89 Aligned_cols=518 Identities=13% Similarity=0.058 Sum_probs=245.4
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
+..+...+.+.|++++|+..++.+..... .+...+..+...+...|++++|.++++.+.+..+. +...+..+...+..
T Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 409 (899)
T TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLS 409 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHh
Confidence 44444555555555555555555544321 23444444555555555555555555555444322 23344444444555
Q ss_pred cCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHH
Q 007329 143 FGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 219 (608)
.|++++|.+.|+.+.+ .+...+..++..+.+.|++++|+++++.+.... +.+..++..+...+...|++++|.+.
T Consensus 410 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (899)
T TIGR02917 410 QGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREA 487 (899)
T ss_pred CCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence 5555555555554422 112233334444444555555555555444322 33344444444444444555555555
Q ss_pred HHHHHHhCC---------------------------------CCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCH
Q 007329 220 HVHVIRFGY---------------------------------EADVDVVNALITMYVKCGDLVRARLVFDGMPK---RDR 263 (608)
Q Consensus 220 ~~~~~~~g~---------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~ 263 (608)
|+++.+... +.+..++..+...+.+.|+.++|...++++.. .+.
T Consensus 488 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 567 (899)
T TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567 (899)
T ss_pred HHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 544444321 22344444444444444455554444444322 133
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMY 343 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (608)
..+..++..+.+.|++++|..+++++.+.. +.+...|..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444445555555555555555444321 2233444444455555555555555555544432 22333444445555
Q ss_pred HhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 007329 344 LSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIK 420 (608)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 420 (608)
.+.|++++|..+|+++.+ .+...+..+...+...|++++|..+++.+.+.+ ..+...+..+...+...|++++|.+
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHH
Confidence 555555555555544433 233444445555555555555555555554443 2233444444445555555555555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC
Q 007329 421 LHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKP 497 (608)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p 497 (608)
.++.+...+ |+..++..+..++.+.|++++|.+.++++.+ .++..++.+...|...|++++|.+.|+++....++
T Consensus 725 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 725 AYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 555544433 2223344444555555555555555544431 23344444455555555555555555555533344
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
+..++..+...+...|+ .+|+..++++.+..+. ++..+..++.+|...|++++|.+.++++ +.+..++..++.+
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 44455555555555555 4455555555444332 3344444555555555555555555555 2244555555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007329 574 YAERGQGALAEEFFRKMI 591 (608)
Q Consensus 574 ~~~~g~~~~A~~~~~~m~ 591 (608)
+.+.|++++|.+++++|+
T Consensus 881 ~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 881 LLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHcCCHHHHHHHHHHHh
Confidence 555555555555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=303.60 Aligned_cols=522 Identities=12% Similarity=0.056 Sum_probs=357.2
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
+..+...+...|++++|...|+.+.+... .+...+..+...+...|++++|...++.+.+..+. +...+..+...+.+
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 375 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLA 375 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 44555678889999999999999987542 35566777778899999999999999999877643 56778889999999
Q ss_pred cCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHH
Q 007329 143 FGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 219 (608)
.|++++|.+.|+++.+ .+...|..+...+...|++++|++.++.+.+.. +.+......++..+.+.|++++|.++
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999998844 355678888889999999999999999998754 33445566778889999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007329 220 HVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP 296 (608)
Q Consensus 220 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (608)
++.+.+.. +.+..++..+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++.+.+ +.
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 99998764 56778899999999999999999999987653 355667777777778888888888888776643 22
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHH
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISC 373 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 373 (608)
+..++..+...+...|+.++|..+++.+.+.+ +.+...+..++..|...|++++|..+++.+.+ .+...|..+..+
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRA 610 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45556666666666666666666666665543 33444455555555566666666655555543 234455555555
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-----------------------
Q 007329 374 YEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGL----------------------- 430 (608)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 430 (608)
|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++.+.+...
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555555432 12333444444555555555555555554443320
Q ss_pred ----------CCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 431 ----------ISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 431 ----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
+.+...+..+...+.+.|++++|.+.|+.+. .|+..++..++.++.+.|++++|.+.++++....+.+
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 769 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPND 769 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 2334444455555555555555555555543 2333445555566666666666666666666445555
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
...+..+...|...|++++|.+.++++.+..+. ++.++..++..+...|+ ++|.+.++++ +.++..+..+...+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 666666666666677777777777776665543 55666666777777777 6677777666 33556666777777
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 007329 575 AERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~~~g 594 (608)
...|++++|.++++++++.+
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC
Confidence 77888888888888887753
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-24 Score=241.67 Aligned_cols=529 Identities=12% Similarity=0.024 Sum_probs=351.4
Q ss_pred hcCCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhH-----------------HHHHHHhhccCCchhhhH
Q 007329 54 NTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDAL-----------------VNLVRLCEWKRGYDEGLY 116 (608)
Q Consensus 54 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~ 116 (608)
...|..+..+..+...+.+.|+.++|...++++.+.. |+...+ ..+.+.+...|++++|.+
T Consensus 56 ~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~ 133 (1157)
T PRK11447 56 LIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALA 133 (1157)
T ss_pred ccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHH
Confidence 3345555557778888899999999999999998855 433222 233446788899999999
Q ss_pred HHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC-
Q 007329 117 LHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD--R-DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGG- 192 (608)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~- 192 (608)
.++.+.+..+.........+.......|+.++|++.|+++.+ | +...+..+...+...|++++|++.++++.+...
T Consensus 134 ~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 134 SYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 999988776543221111111222345899999999999854 3 455777888889999999999999998754320
Q ss_pred --------------C--C--------------CCcchH---------------------HHHHHHhcCCCChhhHHHHHH
Q 007329 193 --------------V--K--------------PDVYTF---------------------PCVLRTCGGVPDLKRGKEVHV 221 (608)
Q Consensus 193 --------------~--~--------------p~~~~~---------------------~~ll~~~~~~~~~~~a~~~~~ 221 (608)
. . |+...+ ......+...|++++|...|+
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0 0 110000 011233556788888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCC-----HhHHH------------HHHHHHHhcCChhHHHH
Q 007329 222 HVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRD-----RISWN------------AMISGYFENGEYMKGLM 284 (608)
Q Consensus 222 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~------------~li~~~~~~~~~~~a~~ 284 (608)
+.++.. +.+..++..+..+|.+.|++++|+..|++..+.+ ...|. .....+.+.|++++|+.
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 887764 3466777788888888888888888887765421 11121 12345667888888888
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC-
Q 007329 285 LFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD- 363 (608)
Q Consensus 285 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 363 (608)
.|++..+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQR 449 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHH
Confidence 888887753 2244556667777888888888888888887663 333444445555543 345566666665544311
Q ss_pred -----------hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC
Q 007329 364 -----------VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS 432 (608)
Q Consensus 364 -----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 432 (608)
...+..+...+...|++++|++.|++..+.... +...+..+...+.+.|++++|...++.+.+.. +.
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~ 527 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PN 527 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 112333445566677777777777777765311 34455666667777777777777777766543 22
Q ss_pred chhHHHH--------------------------------------------HHHHhHhcCCHHHHHHHHccCCCCCcccH
Q 007329 433 YIIIANT--------------------------------------------LIDMYSKCKCIDKALEVFHQIPDKNVISW 468 (608)
Q Consensus 433 ~~~~~~~--------------------------------------------li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 468 (608)
+...+.. +...+...|+.++|.++++. ...+...+
T Consensus 528 ~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~ 606 (1157)
T PRK11447 528 DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRID 606 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHH
Confidence 2222222 23334455566666666552 12344456
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG 548 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 548 (608)
..+...+.+.|++++|++.|++.....+.+...+..++..+...|++++|++.++.+.+..+. +...+..+..++...|
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCC
Confidence 677788888899999999999888555567788888888898999999999999887765433 4556667788888899
Q ss_pred CHHHHHHHHHhc---CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 549 RMKPAWNQFNSN---ER-------DVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 549 ~~~~A~~~~~~~---~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
++++|.++++++ .| +...+..+...+...|++++|++.|++.+.
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999887 11 124666777888889999999999888864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-23 Score=229.10 Aligned_cols=524 Identities=12% Similarity=0.042 Sum_probs=377.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchh-----------
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVR----------- 131 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------- 131 (608)
+....+.....++.+.|.+.++++..... .+...+..++..+.+.|+.++|.+.++.+.+..+.....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcC
Confidence 34455667789999999999999987432 267778888889999999999999999999988643221
Q ss_pred ----HHhHHHHHhhhcCChhhHHHHHcccCCCCcchHH----HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 132 ----LGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWN----VLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 132 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
....+...+.+.|++++|...|++..+.+..... .+.......|+.++|++.++++.+.. +-+...+..+
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~L 187 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTL 187 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 1133345678899999999999998553222211 11122234699999999999999764 4456667788
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhCC------------------C--------------CchhHH----------------
Q 007329 204 LRTCGGVPDLKRGKEVHVHVIRFGY------------------E--------------ADVDVV---------------- 235 (608)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~------------------~--------------~~~~~~---------------- 235 (608)
...+...|+.++|.+.++++.+... . |+....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 8889999999999999998764321 0 110000
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhHHH----
Q 007329 236 -----NALITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP-DFMTLS---- 302 (608)
Q Consensus 236 -----~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~---- 302 (608)
......+...|++++|+..|++..+ .+...+..+...+.+.|++++|+..|++..+..... +...+.
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 0113445667888999988887754 267788888889999999999999998887653221 111111
Q ss_pred --------HHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHH
Q 007329 303 --------SVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--K-DVVSWTTMI 371 (608)
Q Consensus 303 --------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li 371 (608)
.....+.+.|++++|...++++++.. +.+...+..+...+...|++++|++.|++..+ | +...+..+.
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 12335667889999999999888774 44566677788889999999999999988775 3 344566666
Q ss_pred HHHHcCCCchHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 372 SCYEGSVLPDKAVETYQMMEAEGSM--------PDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 372 ~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
..|. .++.++|+..++.+...... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 6664 45678888887765432100 011234456677888999999999999998876 4466777889999
Q ss_pred hHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHhH----------------------------
Q 007329 444 YSKCKCIDKALEVFHQIPD--K-NVISWTSIILGLRLNNRSFEALIFFRKMM---------------------------- 492 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~---------------------------- 492 (608)
|.+.|++++|...++++.+ | +...+..+...+.+.++.++|+..++.+.
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999998753 3 33333333333444555555555444321
Q ss_pred ------------hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 493 ------------LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 493 ------------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..+.+...+..+...+.+.|++++|+..++++.+..+. +...+..++.+|...|++++|.+.++.+
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 123445566777888889999999999999999987655 6778888999999999999999999987
Q ss_pred ---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 561 ---E-RDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 561 ---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
. .+...+..+..++...|++++|.++++++++.
T Consensus 664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 3 45677788888899999999999999999875
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-21 Score=206.90 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=180.7
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
+...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...++.+... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 44556666666665 7888899988777765 466655445555567899999999999987544 344445566777
Q ss_pred HhHhcCCHHHHHHHHccCCCCCcccHHHH---HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNVISWTSI---ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
++.+.|++++|...+++..+.++..++.. ...+...|++++|+..+++.. ...|+...+..+..++.+.|++++|.
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL-~l~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSL-NIAPSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88899999999999988775444333333 333445599999999999998 55567888999999999999999999
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 595 (608)
..++++.+..+. +...+..+..++...|++++|++.++++ +.+...+..+..++...|++++|...+++..+.
T Consensus 630 ~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l-- 706 (987)
T PRK09782 630 SDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD-- 706 (987)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 999999988766 6778888999999999999999999988 446788999999999999999999999999885
Q ss_pred CCCch
Q 007329 596 NWRKL 600 (608)
Q Consensus 596 ~p~~~ 600 (608)
.|+..
T Consensus 707 ~P~~a 711 (987)
T PRK09782 707 IDNQA 711 (987)
T ss_pred CCCCc
Confidence 67654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-20 Score=196.41 Aligned_cols=525 Identities=11% Similarity=-0.064 Sum_probs=362.9
Q ss_pred hcCCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHH
Q 007329 54 NTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLG 133 (608)
Q Consensus 54 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 133 (608)
...|.....+..+...|.+.|+.++|+..+++..+.. |+...|..++..+ +++++|..+++++.+..+.. ..++
T Consensus 72 ~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n-~~~~ 145 (987)
T PRK09782 72 QQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQKAC-DAVP 145 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCC-hhHH
Confidence 3445555557888888999999999999999888743 4444444444333 88889999999998887653 3333
Q ss_pred hHHHHH--------hhhcCChhhHHHHHcccCCC--CcchHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHH
Q 007329 134 NAFLSM--------FVKFGDLGHAWYVFGKMCDR--DLFSWNVL-IGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPC 202 (608)
Q Consensus 134 ~~l~~~--------~~~~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 202 (608)
..+... |.+.+...++++ .+...+ +..+.... ...|.+.|++++|++++.++.+.+ +.+..-...
T Consensus 146 ~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~ 221 (987)
T PRK09782 146 TLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQ 221 (987)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence 334443 666666666666 333333 34444444 888999999999999999999875 334444555
Q ss_pred HHHHhcC-CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----CHhH-----------
Q 007329 203 VLRTCGG-VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-----DRIS----------- 265 (608)
Q Consensus 203 ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~----------- 265 (608)
+..+|.. .++ +.+..+++. .+..+...+..+...|.+.|+.++|.++++++... +..+
T Consensus 222 L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~ 296 (987)
T PRK09782 222 WFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSAN 296 (987)
T ss_pred HHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCc
Confidence 6666666 355 666666442 33467888889999999999999999998887521 0000
Q ss_pred -------------------HHHHHHH------------------------------------------------------
Q 007329 266 -------------------WNAMISG------------------------------------------------------ 272 (608)
Q Consensus 266 -------------------~~~li~~------------------------------------------------------ 272 (608)
.-.++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 376 (987)
T PRK09782 297 PVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANL 376 (987)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCH
Confidence 0001122
Q ss_pred ---------HHhcCChhHHHHHHHHHHHC--CCCCChhHHHHHHHHHhhcCC---hhhHHHH------------------
Q 007329 273 ---------YFENGEYMKGLMLFIMMREV--LVDPDFMTLSSVISASELVGD---EKLGREV------------------ 320 (608)
Q Consensus 273 ---------~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~---~~~a~~~------------------ 320 (608)
..+.|+.++|.++|+..... ...++......++..+.+.+. ...+..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 22344555555555554431 112223333355555555544 2222111
Q ss_pred ----HHHHHHh-CC-CC--CcccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 321 ----HGYVIKM-GF-SD--DVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 321 ----~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
....... +. ++ +...+..+..++.. ++.++|...+.+... |+......+...+...|++++|...|+++
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka 535 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKI 535 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111111 11 23 45566777777776 788889997777654 55433333344556899999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CCCcccH
Q 007329 391 EAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DKNVISW 468 (608)
Q Consensus 391 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 468 (608)
... .|+...+..+...+.+.|+.+.|...++...+.. +.....+..+.....+.|++++|...+++.. .|+...|
T Consensus 536 ~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~ 612 (987)
T PRK09782 536 SLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAY 612 (987)
T ss_pred hcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHH
Confidence 664 4555566677788899999999999999998765 3333344444444556699999999999887 4677788
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG 548 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 548 (608)
..+...+.+.|++++|+..+++.....+.+...+..+..++...|++++|+..++++.+..+. ++..+..+..+|...|
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lG 691 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 899999999999999999999999556667778888999999999999999999999998765 6788899999999999
Q ss_pred CHHHHHHHHHhc---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 549 RMKPAWNQFNSN---ERD-VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 549 ~~~~A~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++++|...++++ .|+ ..+.........+..+++.|.+-+++... +.|+.+
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~ 745 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSS 745 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccch
Confidence 999999999998 554 35566677777788888888888887765 466655
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-20 Score=176.77 Aligned_cols=450 Identities=14% Similarity=0.167 Sum_probs=253.3
Q ss_pred hhhhhhhcCCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCC
Q 007329 48 QVLNTQNTSSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSH 127 (608)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 127 (608)
.+...++..+..+.....+.+...+.|++.+|.+.-...-+... .+......+-..+.+..+.+....--...++..+.
T Consensus 36 ~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q 114 (966)
T KOG4626|consen 36 SVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ 114 (966)
T ss_pred HHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhccch
Confidence 33444555555555566777777788888888876665543221 12222222222333333444333322222222211
Q ss_pred cchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHh
Q 007329 128 LSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTC 207 (608)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 207 (608)
-..+|..+.+.+-..|++++|+. +++.+.+.. +-....|..+..++
T Consensus 115 -~ae~ysn~aN~~kerg~~~~al~-------------------------------~y~~aiel~--p~fida~inla~al 160 (966)
T KOG4626|consen 115 -GAEAYSNLANILKERGQLQDALA-------------------------------LYRAAIELK--PKFIDAYINLAAAL 160 (966)
T ss_pred -HHHHHHHHHHHHHHhchHHHHHH-------------------------------HHHHHHhcC--chhhHHHhhHHHHH
Confidence 22334444444444444554444 444444422 22333444444444
Q ss_pred cCCCChhhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHH
Q 007329 208 GGVPDLKRGKEVHVHVIRFGYEADVDVV-NALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGL 283 (608)
Q Consensus 208 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 283 (608)
...|+.+.|.+.|.+.++. .|+.... +.+...+-..|++++|...+.+..+- =.+.|+.|...+..+|+...|+
T Consensus 161 ~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred HhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHH
Confidence 4444444444444444332 2222211 12222233345555555544443322 2335555666666666666666
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--
Q 007329 284 MLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES-- 361 (608)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 361 (608)
.-|++.... .|+- ...|-.|...|...+.+++|...|.+...
T Consensus 239 q~y~eAvkl--dP~f----------------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 239 QHYEEAVKL--DPNF----------------------------------LDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHhhcC--CCcc----------------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 666655542 2321 12333344444444444444444444332
Q ss_pred C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 007329 362 K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANT 439 (608)
Q Consensus 362 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (608)
| ..+.+..+...|-.+|+.+-|+..+++..+. .|+ ...|+.|..++-..|++.+|.+.+....... +.-....+-
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 2 2334444555555666666666666666654 343 4566667777777777777777776666554 333445566
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCC---cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC-HHHHHHHHHHHhccCcH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKN---VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN-SVTLVSILSACARIGAL 515 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~-~~~~~~ll~~~~~~~~~ 515 (608)
|...|...|.+++|..+|....+-. ....+.|...|-++|+.++|+..|++.+ .+.|+ ...|+.+...|-..|+.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-hcCchHHHHHHhcchHHHHhhhH
Confidence 7777777777777777777665422 2457778888888888888888888887 66665 45788888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-HHHHHHHHHHHH
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-VSAWNILLTGYA 575 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~~~~~~l~~~~~ 575 (608)
+.|.+.+.+++..++. -...++.|...|-..|++.+|++-++.+ +|| +..|-.++.++.
T Consensus 439 ~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 9999999888876554 3456778888999999999999999887 665 456666665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-20 Score=173.34 Aligned_cols=425 Identities=13% Similarity=0.071 Sum_probs=339.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYV 243 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 243 (608)
...|..-..+.|++++|++.-...-+.+ +-+....-.+-..+.+..+.+...+--...++.. +.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 3455566678899999988877665443 2333333333444555556665544443333332 445778999999999
Q ss_pred hcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHH-HHhhcCChhhHHH
Q 007329 244 KCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVIS-ASELVGDEKLGRE 319 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~ 319 (608)
..|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+. .+...|+.++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999988764 567899999999999999999999998887 4566655444333 3345789999999
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC
Q 007329 320 VHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD---VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM 396 (608)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 396 (608)
.|.+.++.. +.-...|+.|...+-..|+...|+..|++..+-| ...|-.|...|...+.+++|+..+.+.... .
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 999888774 4456788999999999999999999999998733 346788888999999999999999988775 4
Q ss_pred CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHH
Q 007329 397 PD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSII 472 (608)
Q Consensus 397 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 472 (608)
|+ ...+..+...|...|.+|.|+.-++..++.. +.=...|+-|..++...|++.+|.+.+.+... ....+.+.|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 55 5677888888999999999999999988754 33357899999999999999999999998774 3456889999
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (608)
..+...|.+++|..+|....+-.+-=....+.|...|-++|++++|...++++++..+. -...|+.++..|-..|+.+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHH
Confidence 99999999999999999998333334567899999999999999999999999874432 25678889999999999999
Q ss_pred HHHHHHhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 553 AWNQFNSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 553 A~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
|.+.+.++ .| -....+.|...|...|+..+|++-+++.+. ++||..
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 99999988 44 356889999999999999999999999987 477765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=179.60 Aligned_cols=296 Identities=14% Similarity=0.054 Sum_probs=196.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHH
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREE 351 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (608)
.+...|++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+.+.+..++.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------------ 104 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE------------------ 104 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH------------------
Confidence 34455666666666666665421 12334555555555555555555555555443211100
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 007329 352 GEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLI 431 (608)
Q Consensus 352 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (608)
.....+..+...|.+.|++++|..+|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+.+..
T Consensus 105 ----------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 105 ----------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred ----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 001234455555666666666666666665532 234455666666666666666666666666554322
Q ss_pred Cc----hhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC--HHHH
Q 007329 432 SY----IIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN--SVTL 502 (608)
Q Consensus 432 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~--~~~~ 502 (608)
+. ...+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.++|+++... .|+ ..++
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ 252 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVL 252 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHH
Confidence 21 12334556666777777777777777653 2 2346667778888888999999999988832 333 4567
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHh---
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAE--- 576 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~--- 576 (608)
..++.++...|++++|.+.++++.+.. |+...+..++..+.+.|++++|..+++++ .|+...+..++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~ 330 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAE 330 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccC
Confidence 888999999999999999999998875 45566788999999999999999999987 7899999988887765
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCch
Q 007329 577 RGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.|+.+++..++++|.+.++.|+..
T Consensus 331 ~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 331 EGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CccchhHHHHHHHHHHHHHhCCCC
Confidence 568999999999999887766554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-17 Score=164.98 Aligned_cols=527 Identities=15% Similarity=0.055 Sum_probs=371.7
Q ss_pred hHHHHHHH--HhCCChHHHHHHHHHHhhcC--CCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHH
Q 007329 63 PNSRLNEL--CLNGSLEQALKYLDSMQELN--ICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLS 138 (608)
Q Consensus 63 ~~~ll~~~--~~~~~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (608)
+..+..+. ...|++..|+.+|..+.... ..||... .+-.++.+.++.+.|+..|...++.++ .++.++..|.-
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~ 241 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGE 241 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHH
Confidence 34444443 45789999999999976543 3334322 223466788999999999999888876 34444443332
Q ss_pred Hhhhc---CChhhHHHHHccc---CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCcchHHHHHHHhcCCC
Q 007329 139 MFVKF---GDLGHAWYVFGKM---CDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVK-PDVYTFPCVLRTCGGVP 211 (608)
Q Consensus 139 ~~~~~---g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~ 211 (608)
.-... ..+..+..++... ...|++..+.|.+.|.-.|++..++.+...+....-.. .-...|-.+.+++-..|
T Consensus 242 ~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 242 VDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 22222 3455666666655 33678889999999999999999999999887643011 12345778889999999
Q ss_pred ChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcC----ChhHHHH
Q 007329 212 DLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENG----EYMKGLM 284 (608)
Q Consensus 212 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~a~~ 284 (608)
++++|.+.|.+..+......+..+-.+...|.+.|+++.+...|+.+.+. +..+...|...|...+ ..++|..
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 99999999988877643333455667888999999999999999988653 5556666666676664 4566666
Q ss_pred HHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHH----HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCC
Q 007329 285 LFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGY----VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRME 360 (608)
Q Consensus 285 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (608)
++.+..+.- ..|...|..+...+....- ......|.. +...+-.+.+...|.+...+...|++++|...|+...
T Consensus 402 ~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 402 VLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 666665542 3355566666555554433 333555544 3455656778889999999999999999999888765
Q ss_pred C-------CCh------hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHH
Q 007329 361 S-------KDV------VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEI-TIASVLSACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 361 ~-------~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 426 (608)
. +|. .+--.+...+-..++.+.|.+.|..+... -|.-. .|..++...-..++..+|...+....
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 4 222 12223455666778899999999999886 34433 34444433344577888888888877
Q ss_pred HhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC-----CCCcccHHHHHHHHH------------hCCCchHHHHHHH
Q 007329 427 RTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP-----DKNVISWTSIILGLR------------LNNRSFEALIFFR 489 (608)
Q Consensus 427 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~------------~~~~~~~A~~~~~ 489 (608)
..+ ..++..+..+...+.+...+.-|.+-|..+. .+|..+.-+|.+.|. ..+..++|+++|.
T Consensus 558 ~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~ 636 (1018)
T KOG2002|consen 558 NID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYG 636 (1018)
T ss_pred hcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 654 5566666777778888888877777555443 234444444444443 2345678999999
Q ss_pred HhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc------CCC
Q 007329 490 KMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN------ERD 563 (608)
Q Consensus 490 ~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~ 563 (608)
+.+...+-|...-+.+.-.++..|++.+|..+|.++++...+ +..+|-.+..+|..+|+|..|+++|+.+ ..+
T Consensus 637 kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 637 KVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 988666778888888888999999999999999999987653 5566778999999999999999999887 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 564 VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 564 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
......|..++...|++.+|.+.+...... .|.+.
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~ 750 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNT 750 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccc
Confidence 788899999999999999999998888774 66654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.5e-20 Score=181.25 Aligned_cols=230 Identities=13% Similarity=0.101 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc----hhHHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD----VDVVNALI 239 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li 239 (608)
+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+.
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 4444445555555555555555554322 23344444555555555555555555555544432211 11233444
Q ss_pred HHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhh
Q 007329 240 TMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKL 316 (608)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 316 (608)
..+.+.|++++|.+.|+++.+. +...+..+...+.+.|++++|.++++++.+.+......++..+..++...|+.++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555554321 3344555556666666666666666666543222122344555555555555555
Q ss_pred HHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHc---CCCchHHHHHHHHHH
Q 007329 317 GREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEG---SVLPDKAVETYQMME 391 (608)
Q Consensus 317 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~ 391 (608)
|...++.+.+. .|+...+..++..+.+.|++++|.++++++.+ |+...++.++..+.. .|+.++++.++++|.
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 55555555444 23333334444444444555444444444332 344444444433332 224444444444444
Q ss_pred HCCCCC
Q 007329 392 AEGSMP 397 (608)
Q Consensus 392 ~~g~~p 397 (608)
+.++.|
T Consensus 346 ~~~~~~ 351 (389)
T PRK11788 346 GEQLKR 351 (389)
T ss_pred HHHHhC
Confidence 444333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-18 Score=179.49 Aligned_cols=413 Identities=11% Similarity=-0.025 Sum_probs=218.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYV 243 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 243 (608)
+......+.+.|++++|++.|++..+ +.|+...|..+..++...|++++|.+.++..++.. +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 33445555666666666666666554 34555556666666666666666666666666543 234455666666666
Q ss_pred hcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHH
Q 007329 244 KCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREV 320 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 320 (608)
..|++++|...|...... +......++..+.. ..+........+.. .++...+..+. .+...........-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVG-NYLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHH-HHHHHccCCcchhh
Confidence 666666666555433211 11111111111111 11111111111110 11111111111 11111111111111
Q ss_pred HHHHHHhCCCCCcccchHHHHHH------HhcCChHHHHHHHhhCCC-----C-ChhhHHHHHHHHHcCCCchHHHHHHH
Q 007329 321 HGYVIKMGFSDDVSVCNPLIKMY------LSFGNREEGEKVFSRMES-----K-DVVSWTTMISCYEGSVLPDKAVETYQ 388 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~a~~~~~~~~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~ 388 (608)
+.... ..+...-..++... ...+++++|.+.|+...+ | ....|+.+...+...|++++|+..++
T Consensus 280 ~~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 280 LEDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11000 00111111111111 123556667766666543 1 23445666666667777777777777
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-C
Q 007329 389 MMEAEGSMPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-N 464 (608)
Q Consensus 389 ~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~ 464 (608)
+..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+ | +
T Consensus 356 kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 356 KSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 76664 233 4456666666677777777777777766654 34456666677777777777777777776653 2 3
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHH------H
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLP------N 538 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~------~ 538 (608)
...|..+...+.+.|++++|+..|++.+...+.+...++.+...+...|++++|.+.++++.+..+..+.... +
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 3455566667777777777777777776444445666777777777777777777777777765443222111 1
Q ss_pred HHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 539 ALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.....|...|++++|.++++++ .| +...+..+...+...|++++|.++|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122233457777777777765 33 4456777777777777777777777777654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-18 Score=168.19 Aligned_cols=512 Identities=14% Similarity=0.082 Sum_probs=376.9
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcC--CcchhHHhHHHHHhhhcCChhhHHHHH
Q 007329 76 LEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMS--HLSVRLGNAFLSMFVKFGDLGHAWYVF 153 (608)
Q Consensus 76 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 153 (608)
.+.|...|....+..+ ++.-.+.--.......+++..|..+|..++...+ .+|+. -.+..++++.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 5899999998877432 2322222222334568899999999999777665 44544 34557788999999999999
Q ss_pred cccCCCCcchHHHHHHHH------HhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhC
Q 007329 154 GKMCDRDLFSWNVLIGGY------AKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG 227 (608)
Q Consensus 154 ~~~~~~~~~~~~~li~~~------~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (608)
....+-|+...++++... -....+..++.++......+ +-|+...+.|..-+.-.|++..+..+...++...
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 999776665555554322 12344667888888877665 5677788889999999999999999999998764
Q ss_pred CCC--chhHHHHHHHHHHhcCCHHHHHHHHccCCCC---C-HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhH
Q 007329 228 YEA--DVDVVNALITMYVKCGDLVRARLVFDGMPKR---D-RISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD-FMT 300 (608)
Q Consensus 228 ~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ 300 (608)
..- -...|--+.++|-..|++++|...|.+..+. + +..+--+.+.|.+.|+.+.+...|+...+. .|| ..|
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~et 378 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYET 378 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHH
Confidence 221 2335777899999999999999999877654 2 445666889999999999999999999875 344 456
Q ss_pred HHHHHHHHhhcC----ChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCC--------CCChhhHH
Q 007329 301 LSSVISASELVG----DEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRME--------SKDVVSWT 368 (608)
Q Consensus 301 ~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~ 368 (608)
...+-..|...+ ..+.|..++....+.- +.|...|-.+...+...+-+.. +.+|.... ...+...|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 666666666554 4566666666666553 5566677777776666544333 44443332 25677889
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHC---CCCCCH-----H-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 007329 369 TMISCYEGSVLPDKAVETYQMMEAE---GSMPDE-----I-TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANT 439 (608)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~-----~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (608)
.+...+...|++++|...|...... -..+|. . +--.+.......++.+.|.+.|..+.+.. +.-+..|-.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHH
Confidence 9999999999999999999988765 223333 2 22334455566789999999999999765 333444555
Q ss_pred HHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhH--hCCCCCHHHHHHHHHHHhc---
Q 007329 440 LIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMM--LNLKPNSVTLVSILSACAR--- 511 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~~~~~~~ll~~~~~--- 511 (608)
+..+....+...+|...+.... +.++..|..+...+.+...+..|.+-|..+. ....+|..+..+|...|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 5434444578889999998776 4567778888889999999999999888877 2234777777777776543
Q ss_pred ---------cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC
Q 007329 512 ---------IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 512 ---------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 578 (608)
.+..++|+++|.++++..+. +...-|-++-+++..|++++|.++|.++ ..+..+|-.+.+.|...|
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH
Confidence 23567899999999988776 7788888999999999999999999998 446789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 007329 579 QGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 579 ~~~~A~~~~~~m~~~g~~p~ 598 (608)
++-.|+++|+...+.-.+-+
T Consensus 695 qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccC
Confidence 99999999999987744333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-17 Score=174.85 Aligned_cols=388 Identities=10% Similarity=-0.038 Sum_probs=218.4
Q ss_pred HHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC---CCCHhHHHHHHHHHHhcCChhH
Q 007329 205 RTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP---KRDRISWNAMISGYFENGEYMK 281 (608)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~ 281 (608)
......|+.++|++++....... +.+...+..+...+.+.|++++|.++|++.. ..+...+..++..+...|++++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33334444444444444443311 2223334444444444455555555444422 1233344444445555555555
Q ss_pred HHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC
Q 007329 282 GLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES 361 (608)
Q Consensus 282 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (608)
|...+++..+.. +.+.. +..+...+...|+.++|...++++.+.. +.+...+..+...+...+..+.|++.++....
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 555555554431 11222 4444444455555555555555555442 22333334445555555555556555555444
Q ss_pred -CCh------hhHHHHHHHHH-----cCCCc---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHccCChHHHHH
Q 007329 362 -KDV------VSWTTMISCYE-----GSVLP---DKAVETYQMMEAE-GSMPDEI-TIA----SVLSACACLGNLDLGIK 420 (608)
Q Consensus 362 -~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~ 420 (608)
|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+.
T Consensus 179 ~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 179 TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 110 01111122111 11223 5677777777653 2223221 111 11334456677888888
Q ss_pred HHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc-------ccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 421 LHQLAMRTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV-------ISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 421 ~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
.|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.+. ..+..+..++.+.|++++|.+.++++.
T Consensus 259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 88877766522 221 222246677778888888888777653221 234445567778888888888888777
Q ss_pred hCCC------------CCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHH
Q 007329 493 LNLK------------PNS---VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 493 ~~~~------------p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (608)
...+ |+. ..+..+...+...|++++|+++++++....+. +...+..++..+...|++++|++.+
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3322 231 24456667778889999999999988877655 5677888888888999999999999
Q ss_pred Hhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 558 NSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 558 ~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+++ .| +...+..++..+...|++++|..+++++++. .|++.
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 887 44 4667777777888889999999999999885 77766
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-17 Score=173.54 Aligned_cols=417 Identities=12% Similarity=-0.009 Sum_probs=254.6
Q ss_pred hHHHHHhhhcCChhhHHHHHcccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCC
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMC--DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVP 211 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 211 (608)
......+.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcC
Confidence 344555666677777777776652 2555566666666777777777777777766543 334445666666677777
Q ss_pred ChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 212 DLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 212 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
++++|..-+......+...+... ..++..+........+...++.-.. +...+..+.. |...........-+..-.+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 77777666655544332212111 1111111111112333333333222 1112221211 1111111111111111110
Q ss_pred CCCCCCh-hHHHHHHH---HHhhcCChhhHHHHHHHHHHhC-C-CCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CC
Q 007329 292 VLVDPDF-MTLSSVIS---ASELVGDEKLGREVHGYVIKMG-F-SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KD 363 (608)
Q Consensus 292 ~~~~p~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 363 (608)
..+.. ..+..+.. .....+++++|.+.|+...+.+ . +.....++.+...+...|++++|...|++..+ |+
T Consensus 286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11110 00111110 0123467778888888877654 1 22345667777778888888888888888765 33
Q ss_pred -hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 364 -VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 364 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
...|..+...+...|++++|+..|++..+.. .-+...+..+...+...|++++|...|+...+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 4567777778888888889998888887763 2346777788888888899999999888888765 445666777888
Q ss_pred HhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHH-------HHHHHHHHHhcc
Q 007329 443 MYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSV-------TLVSILSACARI 512 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~-------~~~~ll~~~~~~ 512 (608)
++.+.|++++|+..|++..+ .+...|+.+...+...|++++|++.|++...-.+.+.. .++..+..+...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 88888999999998887653 34567888888889999999999999988722111111 111122233346
Q ss_pred CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 513 GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|++++|.++++++.+..+. +...+..++.+|...|++++|.+.|+++
T Consensus 522 ~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred hhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8999999999998876543 3456788899999999999999999887
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-17 Score=145.97 Aligned_cols=436 Identities=15% Similarity=0.081 Sum_probs=288.8
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHH--HhhccCCchhhh-HHHHHHHHhcCCcchhHHhHHHHHhhhc
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVR--LCEWKRGYDEGL-YLHSVVSKTMSHLSVRLGNAFLSMFVKF 143 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (608)
+.....+|.+.++--+|+.|.+.|+..+...-..+++ .|.+..+..-+. +-|-.|.+.|.. +..+ .+.
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~s--------WK~ 192 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSS--------WKS 192 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-cccc--------ccc
Confidence 3345678889999999999999999888888777776 333444444221 222223333322 1222 345
Q ss_pred CChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHH
Q 007329 144 GDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHV 223 (608)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 223 (608)
|++.+ ++-+.......+|..||.++|+--..+.|.+++++..... .+.+..+||.+|.+-.-. ..++++.+|
T Consensus 193 G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~----~~K~Lv~EM 264 (625)
T KOG4422|consen 193 GAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYS----VGKKLVAEM 264 (625)
T ss_pred ccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhh----ccHHHHHHH
Confidence 65544 4444445566789999999999999999999999988776 689999999999875432 238899999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHH
Q 007329 224 IRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSS 303 (608)
Q Consensus 224 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 303 (608)
+...+.||..|+|+++.+..+.|+++.|.+. |.+++.+|++-|+.|...+|..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~ 317 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHL 317 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHH
Confidence 9999999999999999999999999887653 5677889999999999999999
Q ss_pred HHHHHhhcCChhh-HHHHHHHHHHh----CCCC----CcccchHHHHHHHhcCChHHHHHHHhhCCC--------C---C
Q 007329 304 VISASELVGDEKL-GREVHGYVIKM----GFSD----DVSVCNPLIKMYLSFGNREEGEKVFSRMES--------K---D 363 (608)
Q Consensus 304 ll~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~ 363 (608)
+|..+++.++..+ +..++.++... .+.| |...|...|..|....+.+-|..+-.-+.. + .
T Consensus 318 iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~ 397 (625)
T KOG4422|consen 318 IIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHR 397 (625)
T ss_pred HHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHH
Confidence 9998888887644 44444444432 2222 444566777888888888888777665543 1 2
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
..-|..+....|+....+.-...|+.|.-.-+-|+..+...++++..-.|.++-..+++.+++..|.........-+...
T Consensus 398 ~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~ 477 (625)
T KOG4422|consen 398 NFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILML 477 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 23466677788888889999999999999888999999999999999999999999999999988865555444444444
Q ss_pred hHhcC-CH-HHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHH-HHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007329 444 YSKCK-CI-DKALEVFHQIPDKNVISWTSIILGLRLNNRSFEAL-IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKE 520 (608)
Q Consensus 444 ~~~~g-~~-~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 520 (608)
+++.. +. .-+.+- +.....-++ -++.++. ..-.+|. .........+..+..+.+.|..++|.+
T Consensus 478 L~~~k~hp~tp~r~Q-----------l~~~~ak~a--ad~~e~~e~~~~R~r-~~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 478 LARDKLHPLTPEREQ-----------LQVAFAKCA--ADIKEAYESQPIRQR-AQDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred HhcCCCCCCChHHHH-----------HHHHHHHHH--HHHHHHHHhhHHHHH-hccCChhHHHHHHHHHHHcchHHHHHH
Confidence 44332 11 000000 011110000 0111111 1111222 233334445555555666666666666
Q ss_pred HHHHHHHhCC-CCCccHHH---HHHHHhHhcCCHHHHHHHHHhc
Q 007329 521 IHAHALRIGV-AFDGFLPN---ALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 521 ~~~~~~~~~~-~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
++..+.+.+- .|-....+ -|++.-.+.++...|..+++-+
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6666643322 22233333 3444445556666666666665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-18 Score=175.64 Aligned_cols=316 Identities=8% Similarity=-0.022 Sum_probs=130.2
Q ss_pred HHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhhcCCh
Q 007329 239 ITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD-FMTLSSVISASELVGDE 314 (608)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 314 (608)
+..+.+.|++++|..+++.... .+...+..++.+....|++++|...++++... .|+ ...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCH
Confidence 3334444555555554444432 13333333444444455555555555554442 222 22333334444444555
Q ss_pred hhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CCh-hhHHHHHHHHHcCCCchHHHHHHHHHH
Q 007329 315 KLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDV-VSWTTMISCYEGSVLPDKAVETYQMME 391 (608)
Q Consensus 315 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 391 (608)
++|...++.+.+.. +.+...+..+...+...|++++|...++.+.. |+. ..+..+ ..+...|++++|...++.+.
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l 204 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALL 204 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence 55555555444432 22333444444444445555554444443321 111 111111 22444444455544444444
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH----HHHHHccCCC--C-C
Q 007329 392 AEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK----ALEVFHQIPD--K-N 464 (608)
Q Consensus 392 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~--~-~ 464 (608)
.....++...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++ |...|++..+ | +
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~ 283 (656)
T PRK15174 205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN 283 (656)
T ss_pred hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC
Confidence 33222222233333344444444444444444444333 2233334444444444444443 3444443331 1 2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
...+..+...+.+.|++++|+..+++.....+.+...+..+..++...|++++|...++.+.+.++. +...+..+..++
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al 362 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 2334444444444444444444444444222223333444444444444444444444444433222 111122233344
Q ss_pred HhcCCHHHHHHHHHhc
Q 007329 545 VRCGRMKPAWNQFNSN 560 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~ 560 (608)
...|+.++|.+.|++.
T Consensus 363 ~~~G~~deA~~~l~~a 378 (656)
T PRK15174 363 LQAGKTSEAESVFEHY 378 (656)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4444444444444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-16 Score=170.89 Aligned_cols=429 Identities=10% Similarity=-0.014 Sum_probs=226.3
Q ss_pred hHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccC---CCCcchHHHHHHHHHh
Q 007329 97 ALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMC---DRDLFSWNVLIGGYAK 173 (608)
Q Consensus 97 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 173 (608)
...-.+.+....|+.++|++++....... +.+...+..+...+.+.|++++|..++++.. ..+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33344444455555555555555544422 1223334555555555566666666665541 1233445555556666
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007329 174 AGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARL 253 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 253 (608)
.|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...|..++|++
T Consensus 96 ~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 666666666666666543 23333 5555556666666666666666666653 2244444556666667777777777
Q ss_pred HHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCCh---hhHHHHHHHHHHh-CC
Q 007329 254 VFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDE---KLGREVHGYVIKM-GF 329 (608)
Q Consensus 254 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~-~~ 329 (608)
.++.... ++.....+ ....+...++-. +.......+++ ++|.+.++.+.+. ..
T Consensus 172 ~l~~~~~-~p~~~~~l--------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 172 AIDDANL-TPAEKRDL--------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred HHHhCCC-CHHHHHHH--------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 7776654 22100000 000000000000 00000111122 4455555555543 11
Q ss_pred CCCccc-ch----HHHHHHHhcCChHHHHHHHhhCCCCC---hh-hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC---
Q 007329 330 SDDVSV-CN----PLIKMYLSFGNREEGEKVFSRMESKD---VV-SWTTMISCYEGSVLPDKAVETYQMMEAEGSMP--- 397 (608)
Q Consensus 330 ~~~~~~-~~----~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--- 397 (608)
.|+... +. ..+..+...|++++|+..|+.+.+.+ +. .-..+...|...|++++|+..|+++.......
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 222111 10 01223345566677777666665421 11 11113446666666777777666665432110
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC---cccHHHHHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKN---VISWTSIILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~ 474 (608)
.......+..++...|++++|.++++.+.+.. ++....+.. ....|+ ...+..+...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~~-------------------~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYGS-------------------PTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecCC-------------------CCCCCCchHHHHHHHHHHH
Confidence 12334444555566666666666666655432 111100000 000122 1234456667
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
+...|+.++|++.++++....+.+...+..+...+...|++++|++.++++.+..+. +...+..++..+.+.|++++|.
T Consensus 369 l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHH
Confidence 778888888888888888556667777888888888888888888888888876543 4556666777788888888888
Q ss_pred HHHHhc---CCCHHHHHHHHHHH
Q 007329 555 NQFNSN---ERDVSAWNILLTGY 574 (608)
Q Consensus 555 ~~~~~~---~~~~~~~~~l~~~~ 574 (608)
.+++++ .|+......+-..+
T Consensus 448 ~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 448 VLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 888887 55544444443333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-16 Score=161.93 Aligned_cols=448 Identities=10% Similarity=-0.005 Sum_probs=262.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCCh--hhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDE--DALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
..+....++|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..++...... .........+...+..
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~ 114 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHH
Confidence 34446678888899999998887744 432 233 77777777788888888888777211 1122333333556777
Q ss_pred cCChhhHHHHHcccCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHH
Q 007329 143 FGDLGHAWYVFGKMCD--R-DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 219 (608)
.|++++|+++|+++.+ | +...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..+|.+.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 7888888888888743 2 3455666677777888888888888887653 45555554444444445555557778
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 007329 220 HVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF 298 (608)
Q Consensus 220 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 298 (608)
++++.+.. +.+...+..+..++.+.|-...|.++..+-+.- +...+.-+ . .+.|.+ ++..+..++.
T Consensus 192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~----~vr~a~~~~~ 258 (822)
T PRK14574 192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAE----QVRMAVLPTR 258 (822)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHH----HHhhcccccc
Confidence 88777774 445666667777777777777777766654421 11111110 0 011111 1111111100
Q ss_pred hHHHHHHHHHhhcCCh---hhHHHHHHHHHHh-CCCCCc-ccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHH
Q 007329 299 MTLSSVISASELVGDE---KLGREVHGYVIKM-GFSDDV-SVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISC 373 (608)
Q Consensus 299 ~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 373 (608)
. ...++ +.|..-++.+... +-.|.. ..|. ...--.+.+
T Consensus 259 ~----------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~---------------------------~~~~Drl~a 301 (822)
T PRK14574 259 S----------ETERFDIADKALADYQNLLTRWGKDPEAQADYQ---------------------------RARIDRLGA 301 (822)
T ss_pred c----------chhhHHHHHHHHHHHHHHHhhccCCCccchHHH---------------------------HHHHHHHHH
Confidence 0 00111 2222222222221 101110 0000 011122345
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC-----CCCchhHHHHHHHHhHhcC
Q 007329 374 YEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTG-----LISYIIIANTLIDMYSKCK 448 (608)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g 448 (608)
+...|++.++++.|+.|...|.+....+-..+..+|...+++++|+.+++.+.... ..++......|..+|...+
T Consensus 302 L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e 381 (822)
T PRK14574 302 LLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESE 381 (822)
T ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcc
Confidence 56666777777777777766655445566667777777777777777777665432 1223333456666777777
Q ss_pred CHHHHHHHHccCCCCCc------------------ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh
Q 007329 449 CIDKALEVFHQIPDKNV------------------ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA 510 (608)
Q Consensus 449 ~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~ 510 (608)
++++|..+++++.+..+ ..+..++..+...|+..+|++.++++...-|-|......+...+.
T Consensus 382 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 382 QLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYL 461 (822)
T ss_pred cHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 77777777776653111 122334566777788888888888887556667777777778888
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNIL 570 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l 570 (608)
..|.+.+|++.++.+....+. +..+....+.++...|++++|..+.++. .|+......|
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 888888888888766665443 4555566777777778888887777666 4444433333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-17 Score=170.31 Aligned_cols=352 Identities=10% Similarity=-0.045 Sum_probs=261.1
Q ss_pred HhcCChhHHHHHHHHHHhcCC-CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007329 172 AKAGFFDEALSLYQRMFWVGG-VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVR 250 (608)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 250 (608)
.+..+++...-+|....++-. -.-+..-...++..+.+.|++++|..+++..+.....+ ...+..++.++...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 344455554444444332210 12233445567778889999999999999988876443 4445555566777999999
Q ss_pred HHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 251 ARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP-DFMTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 251 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
|...++++... +...+..+...+.+.|++++|.+.+++.... .| +...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999988652 6678888888999999999999999998875 34 455677788888999999999999988776
Q ss_pred hCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCC----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHH
Q 007329 327 MGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESK----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITI 402 (608)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 402 (608)
.. +.+...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..+++..+.. ..+...+
T Consensus 173 ~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 64 2233333333 3478889999999999887652 23344555678889999999999999988764 2356677
Q ss_pred HHHHHHHHccCChHH----HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHH
Q 007329 403 ASVLSACACLGNLDL----GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIILGL 475 (608)
Q Consensus 403 ~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 475 (608)
..+...+...|++++ |...++.+.+.. +.+...+..+...+.+.|++++|...+++..+ | +...+..+..++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 778888899999885 788888888765 45677888899999999999999999988763 3 345677788889
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNS-VTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
.+.|++++|+..|+++... .|+. ..+..+..++...|+.++|...++++.+..+.
T Consensus 329 ~~~G~~~eA~~~l~~al~~-~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 329 RQVGQYTAASDEFVQLARE-KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHCCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999988833 3443 34444567788899999999999998876554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-16 Score=161.56 Aligned_cols=434 Identities=11% Similarity=0.048 Sum_probs=300.3
Q ss_pred HhhhcCChhhHHHHHcccCCCCcc---hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhh
Q 007329 139 MFVKFGDLGHAWYVFGKMCDRDLF---SWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKR 215 (608)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 215 (608)
...+.|+++.|+..|++..+.++. ....++..+...|+.++|+.++++.... .+........+...+...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 356889999999999888553222 2337788888889999999988887511 12222223333456777888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHH--hcCChhHHHHHHHHHHHCC
Q 007329 216 GKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYF--ENGEYMKGLMLFIMMREVL 293 (608)
Q Consensus 216 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~ 293 (608)
|.++++++.+.. +.+...+..++..|...++.++|++.++++.+.++.....+..++. ..++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 888888888875 3345666677888888888888888888887654432222333333 3455555888888887753
Q ss_pred CCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHHHH
Q 007329 294 VDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDV---VSWTTM 370 (608)
Q Consensus 294 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l 370 (608)
+-+...+..+..++.+.|-...|.++..+ .|+..+-..... . +.+.|.+..+....+.. ..|.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~--l---~~~~~a~~vr~a~~~~~~~~~r~~-- 265 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQ--L---ERDAAAEQVRMAVLPTRSETERFD-- 265 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHH--H---HHHHHHHHHhhcccccccchhhHH--
Confidence 22455556666777777777777766554 232222111111 0 11222222222111100 0011
Q ss_pred HHHHHcCCCchHHHHHHHHHHHC-CCCCCHH-----HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAE-GSMPDEI-----TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMY 444 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 444 (608)
-.+.|+.-++.+... +-.|... ...-.+.++...|+..++++.++.+...+.+....+-..+.++|
T Consensus 266 --------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 266 --------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred --------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 125566666665542 2224322 22234567788999999999999999988776777889999999
Q ss_pred HhcCCHHHHHHHHccCCCCC---------cccHHHHHHHHHhCCCchHHHHHHHHhHhCCC------------C--CHH-
Q 007329 445 SKCKCIDKALEVFHQIPDKN---------VISWTSIILGLRLNNRSFEALIFFRKMMLNLK------------P--NSV- 500 (608)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------------p--~~~- 500 (608)
...+++++|..+++.+..++ ......|..+|...+++++|..+++++....+ | |-.
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 99999999999999875321 22246788999999999999999999983222 2 222
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHh
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAE 576 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 576 (608)
.+..++..+...|++.+|++.++++....+. |......+.+++...|...+|.+.++.+ +.+..+....+.++..
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 2344567788999999999999999888776 8899999999999999999999999887 4466777888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCch
Q 007329 577 RGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.|++.+|..+.+.+.+. .|++.
T Consensus 497 l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 497 LQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred hhhHHHHHHHHHHHHhh--CCCch
Confidence 99999999999999885 77765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-15 Score=136.83 Aligned_cols=415 Identities=17% Similarity=0.175 Sum_probs=288.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc--CCCChhh-HHHHHHHHHHhCCCCchhHHHHH
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG--GVPDLKR-GKEVHVHVIRFGYEADVDVVNAL 238 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~--~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~l 238 (608)
.+-|.|+. ....|...++.-+|+.|...| ++.+...-..+++..+ ...++-- -.+.|-.|.+.| +.+..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 34555554 356788888999999998887 6666665555554433 2222221 223344444444 2223332
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHH
Q 007329 239 ITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGR 318 (608)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 318 (608)
+.|++.+ ++-+...++..+|..||.++|+-...+.|.+++++-.....+.+..+||.+|.+..-. ...
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 4455544 5555666677899999999999999999999999999888899999999999875433 237
Q ss_pred HHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHH----HHhhCCC----CChhhHHHHHHHHHcCCCchH-HHHHHHH
Q 007329 319 EVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEK----VFSRMES----KDVVSWTTMISCYEGSVLPDK-AVETYQM 389 (608)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~----~~~~~~~~li~~~~~~~~~~~-a~~~~~~ 389 (608)
+++.+|....+.||..|+|+++.+..+.|+++.|.+ ++.+|++ |...+|..+|..+++.++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 888999999999999999999999999998877654 4555554 888899999999999888754 4445555
Q ss_pred HHH----CCCC---C-CHHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCCCc---hhHHHHHHHHhHhcCCHHHHH
Q 007329 390 MEA----EGSM---P-DEITIASVLSACACLGNLDLGIKLHQLAMRT----GLISY---IIIANTLIDMYSKCKCIDKAL 454 (608)
Q Consensus 390 m~~----~g~~---p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~~~~~g~~~~A~ 454 (608)
++. +.++ | |..-|...+..|.+..+.+.|.++....... -+.|+ ..-|..+..+.++....+.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 2233 3 3456778888999999999999988766531 12232 234566778888889999999
Q ss_pred HHHccCCC----CCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccC-c---H-----HH---
Q 007329 455 EVFHQIPD----KNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIG-A---L-----MC--- 517 (608)
Q Consensus 455 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~-~---~-----~~--- 517 (608)
..++.|.. |+..+...++.+..-.|+++-.-++|..+. .|..-+.....-++.-+++.. . . ..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 99998873 566677778888888899998999999988 665555555555555555443 1 1 11
Q ss_pred --HHHHHHHH-----HHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---------CCCHHHHHHHHHHHHhcCCHH
Q 007329 518 --GKEIHAHA-----LRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---------ERDVSAWNILLTGYAERGQGA 581 (608)
Q Consensus 518 --a~~~~~~~-----~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~ 581 (608)
|..+++.. +....+..+...+...-.+.|.|..++|.+++.-. .|.......++..-.+.++..
T Consensus 499 k~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 11111111 11123345566777888899999999999999776 223334456777788889999
Q ss_pred HHHHHHHHHHHcC
Q 007329 582 LAEEFFRKMIDSK 594 (608)
Q Consensus 582 ~A~~~~~~m~~~g 594 (608)
.|.++++-|.+.+
T Consensus 579 qA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 579 QAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999987654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=144.66 Aligned_cols=496 Identities=15% Similarity=0.115 Sum_probs=280.4
Q ss_pred CcchHHHHHHHHhCCChHHHHHHHHHHhhc----CCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhH-Hh
Q 007329 60 TKNPNSRLNELCLNGSLEQALKYLDSMQEL----NICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRL-GN 134 (608)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 134 (608)
...+...+.---..|+-+.|+---++-... ++.....++..|..-|.......+|+..++.+.+...-|+.-. -.
T Consensus 162 ~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkm 241 (840)
T KOG2003|consen 162 CGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKM 241 (840)
T ss_pred hhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeee
Confidence 344666666666677777766544432111 2333444455555666667778888888888877766555432 23
Q ss_pred HHHHHhhhcCChhhHHHHHcccCC--C------CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 007329 135 AFLSMFVKFGDLGHAWYVFGKMCD--R------DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRT 206 (608)
Q Consensus 135 ~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 206 (608)
.+.+.+.+...+.+|++.++.... | .....+.+.-.+.+.|+++.|+..|+...+. .|+..+-..++-+
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIIC 318 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhh
Confidence 345677788888888888765422 2 1234555556678889999999999888764 5887776677777
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHH--------HHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcC-
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVV--------NALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENG- 277 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~- 277 (608)
+...|+-++..+.|..|+.....+|..-| ..|++--.+.. .+.-.-+..
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd----------------------~lk~~ek~~k 376 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND----------------------HLKNMEKENK 376 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH----------------------HHHHHHHhhh
Confidence 77788999999999998876554443322 11111111111 111111111
Q ss_pred -ChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHH
Q 007329 278 -EYMKGLMLFIMMREVLVDPDFMT-LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKV 355 (608)
Q Consensus 278 -~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (608)
+.++++-.-.++..--+.|+... +.-.+...-.+...+.|.++ --.-...|.+.|+++.|.++
T Consensus 377 a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl---------------ei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 377 ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL---------------EINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh---------------hhhHHHHHHhccCHHHHHHH
Confidence 11122211112222112222110 11111111111111111110 00112345566777777776
Q ss_pred HhhCCCCChhhHHHHHH-----HHHc-CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 007329 356 FSRMESKDVVSWTTMIS-----CYEG-SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTG 429 (608)
Q Consensus 356 ~~~~~~~~~~~~~~li~-----~~~~-~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 429 (608)
++-+.+.|..+-++... -|.+ ..++..|...-+...... +-+......-.+.....|++++|.+.+++.....
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 66666544433222211 1222 224455555444443321 1122222222223344677777777777776554
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHH
Q 007329 430 LISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSIL 506 (608)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll 506 (608)
-......||. .-.+.+.|++++|++.|-++. ..++.....+...|-...+...|++++.....-++.|+..+.-|.
T Consensus 521 asc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 521 ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 3333333332 223556777788777776654 345555556666777777777888887777655666777777788
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHH-hcCCHHH
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYA-ERGQGAL 582 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~-~~g~~~~ 582 (608)
..|-+.|+-.+|.+.+-.--+. +.-+..+...|..-|....-+++|+.+|++. +|+.+-|..++..|. +.|+++.
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 8888888888777776544333 2235666677777777777888888888776 788888887776554 5688888
Q ss_pred HHHHHHHHHHcCCCCCch
Q 007329 583 AEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 583 A~~~~~~m~~~g~~p~~~ 600 (608)
|.++++...+. .|.++
T Consensus 679 a~d~yk~~hrk--fpedl 694 (840)
T KOG2003|consen 679 AFDLYKDIHRK--FPEDL 694 (840)
T ss_pred HHHHHHHHHHh--Cccch
Confidence 88888888775 66666
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-12 Score=122.17 Aligned_cols=499 Identities=12% Similarity=0.055 Sum_probs=374.9
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC
Q 007329 79 ALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD 158 (608)
Q Consensus 79 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 158 (608)
=.+++++.++ .++.++..|...+. ..+.+.|+.++....+.-+. +. -|.-+|++..-++.|..++++..+
T Consensus 365 K~RVlRKALe-~iP~sv~LWKaAVe----lE~~~darilL~rAveccp~-s~----dLwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALE-HIPRSVRLWKAAVE----LEEPEDARILLERAVECCPQ-SM----DLWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHH-hCCchHHHHHHHHh----ccChHHHHHHHHHHHHhccc-hH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666555 22223334433332 33455577777666655432 22 344456777888889888887744
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHHHh---cCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc-
Q 007329 159 ---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFW---VGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD- 231 (608)
Q Consensus 159 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~- 231 (608)
.+...|-+-...=-.+|+.+...+++.+-.. .+|+..+...|..=...|-..|.+-.+..+....+..|++..
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 5667777666666678888888888776432 234888888888888889889999999999999998887543
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHH
Q 007329 232 -VDVVNALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISA 307 (608)
Q Consensus 232 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 307 (608)
..+|+.-...|.+.+.++-|..+|....+- +...|...+..--..|..+.-..+|++.... ++-....|......
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 568888888999999999999998877653 5667777777777788899999999988875 22334444444556
Q ss_pred HhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHH
Q 007329 308 SELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVE 385 (608)
Q Consensus 308 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~ 385 (608)
.-..|+...|..++.++.+.. +.+..+|-.-+.......+++.|..+|.+... +....|.--+...--.+..++|++
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 667799999999999988775 44777888888999999999999999988765 666677666666667788899999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--
Q 007329 386 TYQMMEAEGSMPDE-ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD-- 462 (608)
Q Consensus 386 ~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 462 (608)
++++..+. -|+- ..|..+.+.+.+.++++.|...|..-.+. ++..+..|-.|...-.+.|.+-.|+.+|++..-
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 99888875 4554 45677777888888999888887654432 355677888888888899999999999998763
Q ss_pred -CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 007329 463 -KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALL 541 (608)
Q Consensus 463 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 541 (608)
.|...|-..|..-.+.|+.+.|..+..+.++..+.+...|.--|....+.++-......++ + .+-|+.+.-.+.
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk---k--ce~dphVllaia 824 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK---K--CEHDPHVLLAIA 824 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH---h--ccCCchhHHHHH
Confidence 3567899999999999999999999999887788888888777777766665443333333 2 234777778888
Q ss_pred HHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 542 DMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
..|....++++|.+.|.+. +.+..+|.-+...+..+|.-++-.+++.+.... +|.+
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~h 884 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCC
Confidence 8999999999999999988 445678999999999999988889999988775 5543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-13 Score=135.47 Aligned_cols=526 Identities=15% Similarity=0.091 Sum_probs=352.5
Q ss_pred HHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhH
Q 007329 70 LCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHA 149 (608)
Q Consensus 70 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 149 (608)
+...|+.++|.+++.+.++... .+...|.+|...+-.+|+.+++...+-.+....+. |...|..+.....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 3445999999999999987543 46788999999999999999998876655555443 558899999999999999999
Q ss_pred HHHHcccCCCCcchHH---HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc----hHHHHHHHhcCCCChhhHHHHHHH
Q 007329 150 WYVFGKMCDRDLFSWN---VLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY----TFPCVLRTCGGVPDLKRGKEVHVH 222 (608)
Q Consensus 150 ~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~ 222 (608)
.-.|.+..+.++.-|- --+..|-+.|+...|.+.|.++.+..+ +.|.. .-..+++.+...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999998664444443 335678889999999999999987641 22222 233345667777777889988888
Q ss_pred HHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC----CC----------------------HhHHH----HHHH
Q 007329 223 VIRF-GYEADVDVVNALITMYVKCGDLVRARLVFDGMPK----RD----------------------RISWN----AMIS 271 (608)
Q Consensus 223 ~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------------------~~~~~----~li~ 271 (608)
.... +-..+...++.++..|.+...++.|......+.. +| ...|+ -+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 7763 2345567788899999999999999887765543 11 11111 1223
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC--CChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCCh
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVD--PDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNR 349 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 349 (608)
++......+....+.....+..+. -+...|.-+..++...|++..|..++..+......-+..+|-.+..+|...|..
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 344444455555555555665533 345678889999999999999999999998876666778999999999999999
Q ss_pred HHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHccCChHHH
Q 007329 350 EEGEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEA--------EGSMPDEITIASVLSACACLGNLDLG 418 (608)
Q Consensus 350 ~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a 418 (608)
+.|...|+.+.. | +...--.|...+.+.|+.++|.+.++.+.. .+..|+..........+...|+.++-
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999876 3 233344455678899999999999998642 33556666666677778888988876
Q ss_pred HHHHHHHHHhCC-----CC-----------------chhHHHHHHHHhHhcCCHHHHHHHHccCC--------CCCc---
Q 007329 419 IKLHQLAMRTGL-----IS-----------------YIIIANTLIDMYSKCKCIDKALEVFHQIP--------DKNV--- 465 (608)
Q Consensus 419 ~~~~~~~~~~~~-----~~-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~--- 465 (608)
..+...|+.... -| .......++.+-.+.++......-...-. .-.+
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 666666654221 11 11111222223333333222222211110 0111
Q ss_pred -ccHHHHHHHHHhCCCchHHHHHHHHhH--hCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCC---c
Q 007329 466 -ISWTSIILGLRLNNRSFEALIFFRKMM--LNLKPNSV----TLVSILSACARIGALMCGKEIHAHALRI-GVAFD---G 534 (608)
Q Consensus 466 -~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~---~ 534 (608)
..+.-++.++++.+++++|+.+...+. .-+.-+.. .-...+.++...+++..|...++.+... +...+ .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 123456778999999999999999888 22222332 2345567778899999999999988743 22222 3
Q ss_pred cHHHHHHHHhHhcCCHHHHHHHHHhc---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 535 FLPNALLDMYVRCGRMKPAWNQFNSN---ERD--VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..|+...+.+.+.|+-.-=...+... .++ +..+.....-....+.+.-|+..+-+.... .||..
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~P 774 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSP 774 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCc
Confidence 45555555566666544444444444 222 233333333455677888888887777664 77744
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-11 Score=115.82 Aligned_cols=419 Identities=10% Similarity=0.041 Sum_probs=342.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHH----HHhCCCCchhHHHHHHHHHH
Q 007329 168 IGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHV----IRFGYEADVDVVNALITMYV 243 (608)
Q Consensus 168 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~ 243 (608)
.-++++..-++.|..+++..++. ++-+...|.+....--..|+.+...+++++- ...|+..+...|..=...+-
T Consensus 413 wlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 34566777788899999988864 6778888888777777888888888887654 35688888888887777787
Q ss_pred hcCCHHHHHHHHccCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhH
Q 007329 244 KCGDLVRARLVFDGMPKR------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLG 317 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 317 (608)
+.|..-.+..+......- --.+|+.-...|.+.+.++-|..+|....+. .+-+...|......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 888777777766655431 3458888899999999999999999988874 233455666666666677899999
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCC
Q 007329 318 REVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEG 394 (608)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 394 (608)
..+++.++..- +.....|-.....+...|++..|..++...-+ .+...|-.-+.....+.+++.|..+|.+....
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 99999998773 44556666777888889999999999988765 35567888888899999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-cccHHHH
Q 007329 395 SMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-VISWTSI 471 (608)
Q Consensus 395 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l 471 (608)
.|+...|.--+..---.++.++|.+++++..+.- +.-...|..+...+-+.++++.|.+.|..-.+ |+ +..|-.+
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 5666666666666666789999999999888753 44467888999999999999999999987764 43 4567777
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHH
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (608)
...--+.|+.-.|..++++..-..+-|...|...++.-.+.|+.+.|..+..++++.-+. +...|..-|....+.++-.
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccch
Confidence 777888899999999999998667778899999999999999999999999998876544 7788888999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 552 PAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 552 ~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
...+.+++.+.|+...-++...+....+++.|.++|++....+
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999998763
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-12 Score=126.92 Aligned_cols=532 Identities=13% Similarity=0.060 Sum_probs=348.9
Q ss_pred CCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCC-ChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHh
Q 007329 56 SSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICV-DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGN 134 (608)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (608)
.|.....|..|-..|-.+|+.++++..+--+- ...| |...|..+.......|+++.|.-+|..+++..+.. ....-
T Consensus 169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-~~~~~ 245 (895)
T KOG2076|consen 169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN-WELIY 245 (895)
T ss_pred CccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-hHHHH
Confidence 35556669999999999999999988665443 3434 56777777888889999999999999999998764 44444
Q ss_pred HHHHHhhhcCChhhHHHHHcccCCCCc----chH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 007329 135 AFLSMFVKFGDLGHAWYVFGKMCDRDL----FSW----NVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRT 206 (608)
Q Consensus 135 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 206 (608)
.-...|-+.|+...|..-|.++.+-++ .-. -..+..+...++-+.|++.++.....++-..+...+++++..
T Consensus 246 ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael 325 (895)
T KOG2076|consen 246 ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL 325 (895)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 456788899999999999988844222 112 234556777788899999999988755456778889999999
Q ss_pred hcCCCChhhHHHHHHHHHHhC---------------------------CCCchhHHHHHHHHHH--hcCCHHHHHHHHcc
Q 007329 207 CGGVPDLKRGKEVHVHVIRFG---------------------------YEADVDVVNALITMYV--KCGDLVRARLVFDG 257 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g---------------------------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~ 257 (608)
+.+...++.+......+.... +.++..+. .++-++. +.+...+++.-|-.
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~ 404 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLV 404 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHH
Confidence 999999999999888877622 22233331 1222223 33444444433322
Q ss_pred CC----CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCc
Q 007329 258 MP----KRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDV 333 (608)
Q Consensus 258 ~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 333 (608)
.. ..++..|.-+..+|...|++.+|+++|..+......-+...|..+..++...|..+.|.+.|+.++... +.+.
T Consensus 405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~ 483 (895)
T KOG2076|consen 405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNL 483 (895)
T ss_pred HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCch
Confidence 21 226678899999999999999999999999987666678889999999999999999999999998874 4556
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCCCChh------------hHHHHHHHHHcCCCchHHHHHHHHHHHCC-----CC
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMESKDVV------------SWTTMISCYEGSVLPDKAVETYQMMEAEG-----SM 396 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~ 396 (608)
.+--.|...+.+.|+.++|.+.+..+..||.. ..-.....+.+.|+.++=+.+...|...+ +-
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f 563 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIF 563 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677888999999999999999998776522 12223446778899888777777776642 11
Q ss_pred CC-----------------HHHHHHHHHHHHccCChHHHHHHHHH------HHHhCCCCch--hHHHHHHHHhHhcCCHH
Q 007329 397 PD-----------------EITIASVLSACACLGNLDLGIKLHQL------AMRTGLISYI--IIANTLIDMYSKCKCID 451 (608)
Q Consensus 397 p~-----------------~~t~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~~~~--~~~~~li~~~~~~g~~~ 451 (608)
|+ ..+...++.+-.+.++......-... ....|+..+. ..+.-++..+++.++.+
T Consensus 564 ~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~q 643 (895)
T KOG2076|consen 564 PRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQ 643 (895)
T ss_pred chHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHH
Confidence 21 11122233333333332222221111 1112222222 34566778889999999
Q ss_pred HHHHHHccCCCCCc---------ccHHHHHHHHHhCCCchHHHHHHHHhHhC--C--CCCH-HHHHHHHHHHhc------
Q 007329 452 KALEVFHQIPDKNV---------ISWTSIILGLRLNNRSFEALIFFRKMMLN--L--KPNS-VTLVSILSACAR------ 511 (608)
Q Consensus 452 ~A~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~--~p~~-~~~~~ll~~~~~------ 511 (608)
+|+.+...+...+. ..-...+.+.+..+++..|...++.|... . .|.. ..|+..++.+.+
T Consensus 644 eAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~ 723 (895)
T KOG2076|consen 644 EALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVC 723 (895)
T ss_pred HHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888774222 12344567778899999999999999822 1 2221 223322222222
Q ss_pred -----------------------------cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----------cCCHHH
Q 007329 512 -----------------------------IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----------CGRMKP 552 (608)
Q Consensus 512 -----------------------------~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~ 552 (608)
.+.+..|++.+-++....+. ++.+--+|+-+|.. .-.+-.
T Consensus 724 ~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lglafih~a~qr~v~~Rh~~i~q 802 (895)
T KOG2076|consen 724 YLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINLCLGLAFIHLALQRRVSNRHAQIAQ 802 (895)
T ss_pred HHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 23344455544444433322 12222222222211 011222
Q ss_pred HHHHHHhc----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 553 AWNQFNSN----ER--DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 553 A~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+..++++- .+ -..++..+.++|-..|-+.-|..++++.++.
T Consensus 803 G~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 803 GFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 33333222 22 3456778889999999999999999999864
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-13 Score=135.58 Aligned_cols=492 Identities=11% Similarity=-0.011 Sum_probs=264.3
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCC
Q 007329 81 KYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRD 160 (608)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 160 (608)
.++-.+...|+.|+..+|.++|.-|+..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34556667788888888888888888888888887 7887777777777777888888877777777665 677
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHH-HH---h----cC----------------CCCCCcchHHHHHHHhcCCCChhhH
Q 007329 161 LFSWNVLIGGYAKAGFFDEALSLYQR-MF---W----VG----------------GVKPDVYTFPCVLRTCGGVPDLKRG 216 (608)
Q Consensus 161 ~~~~~~li~~~~~~g~~~~a~~~~~~-m~---~----~~----------------~~~p~~~~~~~ll~~~~~~~~~~~a 216 (608)
..+|..|..+|.+.|+... ++..++ |. . .| +.-||..+ ++....-.|-++.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaql 158 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQL 158 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHH
Confidence 7788888888888887654 222222 21 1 11 11111111 11112222333333
Q ss_pred HHHHHHHHHhCC-CCchhHHHHHHHHHHhc-CCHHHHHHHHccCCC-CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007329 217 KEVHVHVIRFGY-EADVDVVNALITMYVKC-GDLVRARLVFDGMPK-RDRISWNAMISGYFENGEYMKGLMLFIMMREVL 293 (608)
Q Consensus 217 ~~~~~~~~~~g~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 293 (608)
.+++..+-.... .|..+ .++-.... ..+++-........+ +++.+|.+++.+-..+|+.+.|..++.+|++.|
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 333322211100 01111 12222222 234444444444444 689999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHH
Q 007329 294 VDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISC 373 (608)
Q Consensus 294 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~ 373 (608)
++.+..-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+...|....+.+..+.-.--....+..+.++
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 99999988888866 888889999999999999999999999888777775553222221111000111122222222
Q ss_pred HHcCCCc-----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC--C-CchhHHHHHHHHhH
Q 007329 374 YEGSVLP-----DKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGL--I-SYIIIANTLIDMYS 445 (608)
Q Consensus 374 ~~~~~~~-----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~~li~~~~ 445 (608)
.....+. .-....+.+..-.|+.-....|.. ..-...+|.-+..+++...+..... . .++..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 1111111 111122222222343333333322 2223335666666665554442111 1 12223333333332
Q ss_pred hc----------------------CCHHHHHHHHccCCCCCc-----------------cc-----------HHHHHHHH
Q 007329 446 KC----------------------KCIDKALEVFHQIPDKNV-----------------IS-----------WTSIILGL 475 (608)
Q Consensus 446 ~~----------------------g~~~~A~~~~~~~~~~~~-----------------~~-----------~~~l~~~~ 475 (608)
+. ....+..++..... ||. .. -+.++..+
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lr-kns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLR-KNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhC-cchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 21 11122222222221 111 01 11223333
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH--hCCCCCccHHHHHHHHhHhcCCHHHH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR--IGVAFDGFLPNALLDMYVRCGRMKPA 553 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A 553 (608)
+..-+..+++..-+......-+ ..|..|+.-+...+..+.|..+.++... ..+..|..-+..+.+.+.+.+...++
T Consensus 470 ~se~n~lK~l~~~ekye~~lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDLLFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 3333333333322222211111 4566666666666666666666665542 23344555566666666666776667
Q ss_pred HHHHHhc------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007329 554 WNQFNSN------ERD-VSAWNILLTGYAERGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 554 ~~~~~~~------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 595 (608)
..+++++ .|+ ..++-.+.++....|+.+...++++-+...|+
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 6666666 111 23444555566666666666666666666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-12 Score=117.87 Aligned_cols=401 Identities=12% Similarity=0.004 Sum_probs=262.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-cchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPD-VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMY 242 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 242 (608)
+-...+-|.++|++++|+++|.+..+ +.|| +..|.....+|...|+|+++.+--...++.. +..+..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 44556678889999999999999886 4577 7778888888899999998888777776653 22345666777788
Q ss_pred HhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH---------HHHC--CCCCChhHHHHHHHHHhhc
Q 007329 243 VKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIM---------MREV--LVDPDFMTLSSVISASELV 311 (608)
Q Consensus 243 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------m~~~--~~~p~~~~~~~ll~~~~~~ 311 (608)
-..|++++|+.= ++-.++..++....-.--+.+++++ |.+. .+.|+.....+....+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 888888887642 2233333333333333333333332 1111 2334444444443332211
Q ss_pred CChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhc--C---ChHHHHHHHhhCC-------CC---Ch------hhHHHH
Q 007329 312 GDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSF--G---NREEGEKVFSRME-------SK---DV------VSWTTM 370 (608)
Q Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~-------~~---~~------~~~~~l 370 (608)
- ......+.......+..++... + .+..|...+.+-. .. |. .+....
T Consensus 265 ~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 265 P------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred c------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 0 0000000111111111111110 1 1222222222211 01 11 111111
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
..-+.-.|+.-.|...|+..+.....++.. |..+...|....+.++....|....+.+ +-++.+|..-..++.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHH
Confidence 112445788899999999999876554432 7777788999999999999999998877 55667777777777788999
Q ss_pred HHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 451 DKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 451 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
++|..-|++..+- ++..|--+.-+..+.++++++...|++....++.-+..|+.....+...++++.|.+.|+.+++
T Consensus 411 e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 411 EEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999988754 3455666666667888999999999999988888899999999999999999999999999987
Q ss_pred hCCCCC-------ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 528 IGVAFD-------GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 528 ~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
....-+ +.+.-.++-.-. .+++..|.+++.++ +.....|..|...-...|+.++|+++|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 654422 222222332223 38999999999998 33456899999999999999999999998753
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-12 Score=120.61 Aligned_cols=442 Identities=13% Similarity=0.136 Sum_probs=247.8
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHH-HHhhccCCchhhhHHHHHHHHhcCCcchh----HHhHHH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLV-RLCEWKRGYDEGLYLHSVVSKTMSHLSVR----LGNAFL 137 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 137 (608)
+..+...|..+....+|+..|+-+.+....|+...+..-+ ..+.+.+.+.+|++.++..+..-+..+.. ..+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 4566778888999999999999999988889887765544 58889999999999999988877655433 445555
Q ss_pred HHhhhcCChhhHHHHHcccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----------CCCcchHHHHH
Q 007329 138 SMFVKFGDLGHAWYVFGKMCD--RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGV-----------KPDVYTFPCVL 204 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------~p~~~~~~~ll 204 (608)
-.+.+.|.++.|+.-|+...+ |+..+--.|+-++.--|+.++..+.|.+|..-.|. .|+....+..|
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 678899999999999998844 67655444444555578899999999998764321 12222222222
Q ss_pred H-----HhcCCC--ChhhHHHHHHHHHHhCCCCchhH-------------HH--------HHHHHHHhcCCHHHHHHHHc
Q 007329 205 R-----TCGGVP--DLKRGKEVHVHVIRFGYEADVDV-------------VN--------ALITMYVKCGDLVRARLVFD 256 (608)
Q Consensus 205 ~-----~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~-------------~~--------~li~~~~~~g~~~~A~~~~~ 256 (608)
. -.-+.+ +.+++.-.-..++.--+.|+-.. +. .-..-|.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 1 111111 11122211122222112222110 00 01123445566666666655
Q ss_pred cCCCCCHhHHHHHHH-----HHHh-cCChhHHHHHHHHHHHCCCCCChhHHHHHH-----HHHhhcCChhhHHHHHHHHH
Q 007329 257 GMPKRDRISWNAMIS-----GYFE-NGEYMKGLMLFIMMREVLVDPDFMTLSSVI-----SASELVGDEKLGREVHGYVI 325 (608)
Q Consensus 257 ~~~~~~~~~~~~li~-----~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~ 325 (608)
-+.++|..+-.+... -|.+ ..++.+|...-+..+. ..-|+... ......|++++|.+.|++.+
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln------~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN------IDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc------ccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 555443332222111 1111 1233334333332221 11122111 11223456666666666665
Q ss_pred HhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHH
Q 007329 326 KMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITI 402 (608)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 402 (608)
..........|| +.-.+-..|++++|++.|-++.. .+......+...|-...+..+|++++.+.... ++.|+..+
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 443222222332 22234555666666666655543 44445555555666666666666666444332 33345556
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CCCcccHHHHHHHH-HhCC
Q 007329 403 ASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DKNVISWTSIILGL-RLNN 479 (608)
Q Consensus 403 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~-~~~~ 479 (608)
.-|...|-+.|+-..|.+.+-+-.+. ++.+..+...|...|....-+++++..|++.. +|+..-|..|+..| .+.|
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 66666666666666666655433322 35556666666666666666666666666543 56666666665443 3456
Q ss_pred CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 480 RSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
++.+|+++|+...+.++.|...+..|++.|...|
T Consensus 675 nyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 6666666666666666666666666666665554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-12 Score=124.11 Aligned_cols=215 Identities=8% Similarity=-0.062 Sum_probs=143.9
Q ss_pred HHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-------HHHHHHHHhH
Q 007329 373 CYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYII-------IANTLIDMYS 445 (608)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~ 445 (608)
.+...|++++|...++++.+.. +-+...+..+...|.+.|+++.+.+++..+.+.+..++.. .|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544443 1123344444455555555555555555555443322111 1222232233
Q ss_pred hcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIH 522 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 522 (608)
...+.+...++++...+ .++.....+...+...|+.++|.+.+++... .+|+... .++.+....++.+++.+..
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l--~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERL--VLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHH--HHHHhhccCCChHHHHHHH
Confidence 34455666666666652 4666777788888889999999999988874 5566532 2344445668999999999
Q ss_pred HHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 523 AHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 523 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+...+..+. |+..+.++...+.+.|++++|.+.|+++ .|+...+..+...+.+.|+.++|.+++++-..
T Consensus 318 e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 318 RQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 988887665 7777888999999999999999999998 89999999999999999999999999998765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-12 Score=127.00 Aligned_cols=279 Identities=10% Similarity=0.040 Sum_probs=164.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccch--HHHHHHHhcCChHHHH
Q 007329 276 NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCN--PLIKMYLSFGNREEGE 353 (608)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 353 (608)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.+.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555554433321111 111222233335566666666666665543 33333222 2245566666666666
Q ss_pred HHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCChHHHHHHHH
Q 007329 354 KVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDE-------ITIASVLSACACLGNLDLGIKLHQ 423 (608)
Q Consensus 354 ~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~ 423 (608)
..++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666654 24455566666677777777777777777766544222 122233333333344444455554
Q ss_pred HHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHH
Q 007329 424 LAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLV 503 (608)
Q Consensus 424 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~ 503 (608)
.+-+. .+.++.....+...+...|+.++|.+++++..+.....--.++.+.+..++.+++++..+...+..+-|...+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l 332 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWS 332 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHH
Confidence 44322 24456666777777777788888777777665433222233444555567778888888777755666666777
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+...|.+.+++++|.+.|+.+.+. .|+...+..|..++.+.|+.++|.+++++.
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888887764 466667777888888888888888877654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=135.42 Aligned_cols=250 Identities=16% Similarity=0.141 Sum_probs=105.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhC-CC----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007329 338 PLIKMYLSFGNREEGEKVFSRM-ES----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412 (608)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 412 (608)
.+...+.+.|++++|.+++++. .. .|...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456666777777777777432 22 23444555555566677777777777777765433 44455555555 577
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC-----CCCcccHHHHHHHHHhCCCchHHHHH
Q 007329 413 GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP-----DKNVISWTSIILGLRLNNRSFEALIF 487 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 487 (608)
+++++|.+++....+.. ++...+..++..+.+.++++++.++++.+. ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888877776655432 345556667777778888888888777743 24556777788888899999999999
Q ss_pred HHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCC
Q 007329 488 FRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERD 563 (608)
Q Consensus 488 ~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 563 (608)
+++.++..+.|......++..+...|+.+++.++++...+.. ..|+..+..+..+|...|+.++|...+++. +.|
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 999985555568888899999999999999999999888765 447788889999999999999999999998 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 564 VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 564 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+.....+..++...|+.++|.++.++..+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88889999999999999999999887754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-11 Score=123.09 Aligned_cols=220 Identities=11% Similarity=0.025 Sum_probs=136.1
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH-------HHHHHH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIA-------NTLIDM 443 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~ 443 (608)
...+...|+++.|...++.+.+... -+...+..+...+...|+++.+.+++..+.+.+..+..... ..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555431 13334445555555555555555555555554432222111 111111
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHH--HHHHHHHhccCcHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTL--VSILSACARIGALMCG 518 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~--~~ll~~~~~~~~~~~a 518 (608)
-......+...+.++...+ .++..+..+...+...|+.++|.+.+++.....+.+.... ..........++.+.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 1112223444455555543 3667777788888888888888888888883333333211 1122222345777888
Q ss_pred HHHHHHHHHhCCCCCc--cHHHHHHHHhHhcCCHHHHHHHHHh--c---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 519 KEIHAHALRIGVAFDG--FLPNALLDMYVRCGRMKPAWNQFNS--N---ERDVSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
.+.++...+..+. |+ ....+++..+.+.|++++|.+.|+. . .|+...+.++...+.+.|+.++|.+++++..
T Consensus 319 ~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888776554 55 6777899999999999999999994 3 7888888899999999999999999999865
Q ss_pred H
Q 007329 592 D 592 (608)
Q Consensus 592 ~ 592 (608)
.
T Consensus 398 ~ 398 (409)
T TIGR00540 398 G 398 (409)
T ss_pred H
Confidence 4
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-12 Score=126.39 Aligned_cols=282 Identities=12% Similarity=0.020 Sum_probs=195.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcc--cchHHHHHHHhcCChHH
Q 007329 275 ENGEYMKGLMLFIMMREVLVDPDFMT-LSSVISASELVGDEKLGREVHGYVIKMGFSDDVS--VCNPLIKMYLSFGNREE 351 (608)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 351 (608)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+.+++....+.. |+.. +.-.....+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 467788888777766554 344333 3344456667788888888888876543 4433 33335777788888888
Q ss_pred HHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HccCChHHHHHHHHHH
Q 007329 352 GEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSAC---ACLGNLDLGIKLHQLA 425 (608)
Q Consensus 352 a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~~~~~~a~~~~~~~ 425 (608)
|...++.+.+ | +...+..+...+.+.|++++|.+++..+.+.++.+.......-..++ ...+..+.+.+.+..+
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888776 3 55667778888889999999999999988886543322211111111 2222333333444444
Q ss_pred HHhCC---CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCccc---HHHHHHHHHhCCCchHHHHHHHHhHhCCCC
Q 007329 426 MRTGL---ISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVIS---WTSIILGLRLNNRSFEALIFFRKMMLNLKP 497 (608)
Q Consensus 426 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p 497 (608)
.+... +.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+.+.+++..+..+-
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 44322 24778888888999999999999999998875 33321 122222334457788888888888755555
Q ss_pred CH--HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 498 NS--VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 498 ~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|. ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55 6777899999999999999999997666666788888889999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-10 Score=102.91 Aligned_cols=411 Identities=13% Similarity=0.087 Sum_probs=276.1
Q ss_pred hCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHH
Q 007329 72 LNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWY 151 (608)
Q Consensus 72 ~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (608)
.++++..|..+|++.+... ..+...|...+.+-.+...+..|..+++..+..-+..|. .|-..+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 3667778888888887644 346667777788888888899999999988887766543 33344444456689999999
Q ss_pred HHcccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh-CC
Q 007329 152 VFGKMC--DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF-GY 228 (608)
Q Consensus 152 ~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~ 228 (608)
+|+.-. +|+..+|++.|+.=.+-+..+.|..++++..- +.|+..+|.--.+.-.+.|.+..+.++++..++. |-
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 998874 48999999999998899999999999998874 6799988888888888889999999999887764 21
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHccCC----CC-CHhHHHHHHHHHHhcCChhHHHHH--------HHHHHHCCC
Q 007329 229 -EADVDVVNALITMYVKCGDLVRARLVFDGMP----KR-DRISWNAMISGYFENGEYMKGLML--------FIMMREVLV 294 (608)
Q Consensus 229 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~--------~~~m~~~~~ 294 (608)
..+...+.+....=.++..++.|.-+|.-.. +. ....|..+...=-+.|+.....+. ++.++.. -
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-N 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-C
Confidence 1123344444444455667777777765433 32 233454444444445554433332 2333333 2
Q ss_pred CCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCc--ccchHHH--------HHHHhcCChHHHHHHHhhCCC--C
Q 007329 295 DPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDV--SVCNPLI--------KMYLSFGNREEGEKVFSRMES--K 362 (608)
Q Consensus 295 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~--~ 362 (608)
+-|-.+|--.++.-...|+.+...++|+..+..- +|-. ..|.-.| -.-....+++.+.++|+...+ |
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 3456666666776677788888888888887653 4421 1111111 111344677777777766655 2
Q ss_pred -ChhhHHHH----HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH
Q 007329 363 -DVVSWTTM----ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIA 437 (608)
Q Consensus 363 -~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (608)
...|+.-+ ..--.++.+...|.+++.... |.-|-..+|...|..=.+.+++|.+..+++..++.+ +.+..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHH
Confidence 23333332 333446677778887776655 446777788777777778888888888888877776 5566777
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCC-CC----cccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPD-KN----VISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
......-...|+.+.|..+|+-..+ |. ...|-+.|+--...|.++.|..+|++++
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 7766666777888888888876553 32 2456666666677788888888888877
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-14 Score=132.69 Aligned_cols=253 Identities=16% Similarity=0.117 Sum_probs=81.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHH-HHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 007329 270 ISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI-SASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348 (608)
Q Consensus 270 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (608)
...+.+.|++++|++++++.......|+...|..++ ..+...++.+.|.+.++.+.+.+ +-+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 334445555555555554333332223333333322 23334555666666666665544 2244455555555 56666
Q ss_pred hHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 007329 349 REEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEG-SMPDEITIASVLSACACLGNLDLGIKLHQLA 425 (608)
Q Consensus 349 ~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 425 (608)
+++|.+++...-+ ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666655432 444555566666667777777777777765432 2345556666666677777777777777777
Q ss_pred HHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHH
Q 007329 426 MRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTL 502 (608)
Q Consensus 426 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~ 502 (608)
.+.. +.+......++..+...|+.+++.++++... ..|+..|..+..++...|++++|+..|++.....+.|..+.
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 7665 3455566667777777777776555555443 23455566666666666666666666666654444456666
Q ss_pred HHHHHHHhccCcHHHHHHHHHHH
Q 007329 503 VSILSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~ 525 (608)
..+..++...|+.++|.++.+++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHT---------------
T ss_pred ccccccccccccccccccccccc
Confidence 66666666666666666665544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.7e-10 Score=102.34 Aligned_cols=424 Identities=12% Similarity=0.085 Sum_probs=238.7
Q ss_pred ChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC--CCc-chHHHHHHH
Q 007329 94 DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD--RDL-FSWNVLIGG 170 (608)
Q Consensus 94 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~ 170 (608)
+...|.....--...+++..|..+|+..+.-. ..+...|-..+.+=.++..+..|..+++.... |-+ .-|--.+..
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 44444444444455667777888888777665 34566666667777777778888888877633 222 234444444
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 007329 171 YAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVR 250 (608)
Q Consensus 171 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 250 (608)
=-..|+...|.++|++..+ ..|+...|.+.|+.-.+-+.++.|..+++..+-. .|++..|......=.++|++..
T Consensus 151 EE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 4456788888888877664 5688888888888777777888888888777654 4777777777777777788777
Q ss_pred HHHHHccCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--hhHHHHHHHHHhhcCChhhHHHHHH
Q 007329 251 ARLVFDGMPKR------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD--FMTLSSVISASELVGDEKLGREVHG 322 (608)
Q Consensus 251 A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~ 322 (608)
|..+|+...+. +...+.++..-=.++..++.|.-+|+-..+. ++-+ ...|......=-+-|+.....+..-
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 77777765532 2233444444444555666666666665554 1112 2234444433334455444443331
Q ss_pred ---HH-----HHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CCh---hhHHHHHH--------HHHcCCCch
Q 007329 323 ---YV-----IKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDV---VSWTTMIS--------CYEGSVLPD 381 (608)
Q Consensus 323 ---~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~---~~~~~li~--------~~~~~~~~~ 381 (608)
.+ ++. -+-|-.+|--.+..-...|+.+...++|++... |.. ..|...|- .-....+.+
T Consensus 305 ~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11 111 133444455555555566666666666666543 111 11211111 112345566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH----HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSAC----ACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVF 457 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (608)
.+.++++...+. ++-...||.-+=-.| .+..++..|.+++...+ |..|...+|...|..-.+.+++|.+..++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY 460 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY 460 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence 666666666552 222334444332222 24556666666665544 44555666666666666666666666666
Q ss_pred ccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 458 HQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKMML--NLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 458 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
++..+- |..+|.-....-...|+.+.|..+|.-.+. .+......+...|.--...|.++.|..+++++++.
T Consensus 461 Ekfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 461 EKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 665532 334555555555556666666666666651 12222333444444445556666666666666654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-11 Score=117.83 Aligned_cols=167 Identities=12% Similarity=-0.019 Sum_probs=120.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc------ccHHHHHHHH
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV------ISWTSIILGL 475 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~ 475 (608)
-+.++..|++.-+..+++..-+.....-+. ..|..||+.+......+.|..+.++...++. .-+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 345556666666666666544443333222 6789999999999999999999999987654 4577788899
Q ss_pred HhCCCchHHHHHHHHhHh--CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH
Q 007329 476 RLNNRSFEALIFFRKMML--NLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~--~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (608)
.+.+....+..+++++.+ ...| ...++-.++......|+.+...++++-+...|+.-+ .-++....+.++...
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~ 614 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSA 614 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhh
Confidence 999999999999999982 2333 345666777888889999999999999888887642 235555677888888
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHH
Q 007329 553 AWNQFNSN----ERDVSAWNILLTGYA 575 (608)
Q Consensus 553 A~~~~~~~----~~~~~~~~~l~~~~~ 575 (608)
|.+.++.. ++.+..-..+.+.+.
T Consensus 615 a~ea~e~~~qkyk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 615 AQEAPEPEEQKYKPYPKDLEGLCRLVY 641 (1088)
T ss_pred hhhcchHHHHHhcCChHHHHHHHHHHH
Confidence 88887665 555555444444443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.1e-10 Score=105.02 Aligned_cols=253 Identities=13% Similarity=0.018 Sum_probs=121.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCC--CCCcccchHHHHHHHhcCCh
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGF--SDDVSVCNPLIKMYLSFGNR 349 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 349 (608)
++-...+.+++..-.+.....|+.-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-....++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3333444455555555555554443333333333334445555566666655555420 11233343333222111111
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 007329 350 EEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTG 429 (608)
Q Consensus 350 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 429 (608)
.---...-.+.+=-+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-++.+++-+
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 11111111111122233334444455555556666666665554311 23344445555555566666666666555544
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHH
Q 007329 430 LISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSIL 506 (608)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll 506 (608)
+-|-..|-.|.++|.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|+..|++....-..+...+..|.
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~La 473 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLA 473 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4455555556666666666666666665544 234556666666666666666666666665533333455555666
Q ss_pred HHHhccCcHHHHHHHHHHHH
Q 007329 507 SACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~ 526 (608)
..+-+.++.++|.+.++..+
T Consensus 474 kLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 474 KLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 66666666666655555444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-11 Score=112.92 Aligned_cols=370 Identities=13% Similarity=0.122 Sum_probs=257.3
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHH--HHH
Q 007329 227 GYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTL--SSV 304 (608)
Q Consensus 227 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~l 304 (608)
+...|...+-...-.+.+.|....|+..|......-+..|.+.+...--..+.+.+..+.. |...|...+ --+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHHHH
Confidence 3344555444445556677888999988887776555566655544333333333222211 122121111 123
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCC------ChhhHHHHHHHHHcCC
Q 007329 305 ISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESK------DVVSWTTMISCYEGSV 378 (608)
Q Consensus 305 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~ 378 (608)
..++......+++.+-.+.....|++.+...-+....+.-...++++|+.+|+++.+. |..+|+.++ |+++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3456666678888888888888887777766666777777888999999999999873 455666655 33333
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc
Q 007329 379 LPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 379 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
+ ..+..+.+-...--+--+.|...+.+.|+-.++.++|...|+...+.+ +-....|+.+..-|....+...|.+-++
T Consensus 312 ~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 K--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred h--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2 122222221111112334577788888888999999999999999887 5566778888888999999999999999
Q ss_pred cCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcc
Q 007329 459 QIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGF 535 (608)
Q Consensus 459 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 535 (608)
...+ .|-..|..+..+|.-.+...=|+-.|++...-.+.|+..|.+|..+|.+.++.++|.+.+..+...|-. +..
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 8765 456788889999999999999999999998555568889999999999999999999999999887744 668
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc--------CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchhhhh
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN--------ERDVSAWN---ILLTGYAERGQGALAEEFFRKMIDSKGNWRKLMGLF 604 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 604 (608)
.+..|.+.|.+.++.++|...+++. ..+..+.. -|...+.+.+++++|..+......-+..-..-.+++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~Ll 547 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHH
Confidence 8889999999999999999988775 12332222 255567788899998887777665322222235555
Q ss_pred ccc
Q 007329 605 RKC 607 (608)
Q Consensus 605 ~ac 607 (608)
|-|
T Consensus 548 Rei 550 (559)
T KOG1155|consen 548 REI 550 (559)
T ss_pred HHH
Confidence 544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-12 Score=123.87 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=147.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHH---HHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTS---IILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~ 474 (608)
.+.||..+.+.|.-+++.+.|++.|+..+..+ +-....|+.+..-+.....+|.|...|+.....|+..||+ +...
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 45677777777777777777777777666543 2245666666666666777788888888777666655544 5667
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
|.+.++++.|+-.|++..+--+-+.+....+...+-+.|+.++|+++++++...+++ |+..--.-+..+...+++++|+
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHH
Confidence 888888888888888887333446667777777888888999999999988887776 4444444567777889999999
Q ss_pred HHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 555 NQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 555 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
..++++ +.+...+..++..|.+.|+.+.|+.-|--+.+...++.+
T Consensus 578 ~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 578 QELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 988887 456777888888999999999998888888776555444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-10 Score=109.69 Aligned_cols=266 Identities=11% Similarity=0.011 Sum_probs=158.7
Q ss_pred CCcccchHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007329 331 DDVSVCNPLIKMYLSFGNREEGEKVFSRMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLS 407 (608)
Q Consensus 331 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 407 (608)
-+..+.....+-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.++.+.- +-...+|-.+.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444444555556666777777777666653 23344444556666666666666666666552 224556666666
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHH
Q 007329 408 ACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEA 484 (608)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 484 (608)
-|...|+.++|++.|.+....+ +.=...|-.....|.-.|.-|.|+..+....+ ..-..+--+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 6666677777777776655433 11234455666666666666666665544332 1111222334456666777777
Q ss_pred HHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC--CCC----CccHHHHHHHHhHhcCCHHHHHHHHH
Q 007329 485 LIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG--VAF----DGFLPNALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 485 ~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (608)
.++|.+...-.|-|+..++-+.-.....+.+.+|..+|+..+..- ..+ -..+++.|+.+|.+.+++++|+..++
T Consensus 400 e~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 777777763333455566666656666677777777776655211 111 12235667777777777777777777
Q ss_pred hc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 559 SN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 559 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+. +.|..++.++.-.|...|+++.|.+.|.+.+. +.|+.+
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~ 523 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNI 523 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccH
Confidence 76 55677777777777777777777777777765 467664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-10 Score=104.25 Aligned_cols=284 Identities=12% Similarity=0.050 Sum_probs=172.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHH
Q 007329 276 NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKV 355 (608)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 355 (608)
.|+|.+|+++..+-.+.+-.| ...|..-.++....|+.+.+..++.++-+..-.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777766655544322 2334444455556666666666666655542233333344444444445555554444
Q ss_pred HhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC
Q 007329 356 FSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS 432 (608)
Q Consensus 356 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 432 (608)
++++.+ .+.........+|.+.|++.....++.+|.+.|.--|...-. .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------L 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------H
Confidence 443332 334444444445555555555555555554444332221000 0
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHH
Q 007329 433 YIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSA 508 (608)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~ 508 (608)
...+|+.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++.. .+..|+ ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 01223334443444444444445555555 3455566667777778888888888888777 445554 333445
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007329 509 CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
+.+-++.+.-.+..++..+..+. ++..+.+|+..|.+.+.|.+|.+.|+.. .|+..+|+.+..++.+.|++++|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 66777888777777766655433 5588889999999999999999999987 8899999999999999999999999
Q ss_pred HHHHHHHc
Q 007329 586 FFRKMIDS 593 (608)
Q Consensus 586 ~~~~m~~~ 593 (608)
+.++....
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 99988744
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=120.21 Aligned_cols=277 Identities=10% Similarity=0.038 Sum_probs=149.7
Q ss_pred CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC------CCcchHHHHHHHHHhcCChhHHHHH
Q 007329 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD------RDLFSWNVLIGGYAKAGFFDEALSL 183 (608)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~ 183 (608)
+..+|..+|+.+..... .+..+...+..+|...+++++|+++|+.+.+ .+...|.+.+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 34555555555322222 2224444555555555666666666655522 2444555555433221 11222
Q ss_pred HH-HHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCC
Q 007329 184 YQ-RMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRD 262 (608)
Q Consensus 184 ~~-~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 262 (608)
+- .+.... +-.+.+|.++..+|.-.++.+.|.+.|+..+... +....+|+.+..-+.....+|.|...|+.....|
T Consensus 409 Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 11 111111 3334555555555555555555555555555432 2245566666666666677777777777776666
Q ss_pred HhHHHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHH
Q 007329 263 RISWNA---MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPL 339 (608)
Q Consensus 263 ~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 339 (608)
+..||+ +.-.|.+.++++.|+-.|++..+.+.. +......+...+.+.|+.|+|+++++++.... +.|+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 665554 445677777777777777776664321 33444445555566666777777776666554 2333333344
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC
Q 007329 340 IKMYLSFGNREEGEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM 396 (608)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 396 (608)
+..+...+++++|+..++++++ | +...+-.+...|.+.|+.+.|+.-|..+.+...+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 4555556666666666666654 3 3444555556666666666666666666655433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-10 Score=106.65 Aligned_cols=398 Identities=11% Similarity=0.034 Sum_probs=225.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCC-hhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhc
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVD-EDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKF 143 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (608)
..-.-+.++|++++|++.|.+.++ ..|+ +.-|.....+|...|+|+++.+.....++..+.- +..+..-.+++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHhh
Confidence 334567889999999999999988 5578 5667777778889999999999887777765432 33445556666677
Q ss_pred CChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHH--------HHHHh--cCCCCCCcchHHHHHHHhcCCC--
Q 007329 144 GDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLY--------QRMFW--VGGVKPDVYTFPCVLRTCGGVP-- 211 (608)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~--------~~m~~--~~~~~p~~~~~~~ll~~~~~~~-- 211 (608)
|++++|+.-.- -.++..++..+.-..-+.+++ ++-.+ ..++-|+.....+....+...-
T Consensus 197 g~~~eal~D~t---------v~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 197 GKFDEALFDVT---------VLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred ccHHHHHHhhh---------HHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 78777654222 222222222222222222222 22111 1223455444444444332110
Q ss_pred ----ChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHccC-------CC-C--CH------hHHHHHH
Q 007329 212 ----DLKRGKEVHVHVIRFGYEADVDVVNALITMYVKC-GDLVRARLVFDGM-------PK-R--DR------ISWNAMI 270 (608)
Q Consensus 212 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~-~--~~------~~~~~li 270 (608)
..+++-..+....+ ..+... ..+..|...+.+- .. . |. .+...-.
T Consensus 268 ~~~~~~~ksDa~l~~~l~--------------~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALE--------------ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred cccCCCccchhhHHHHHH--------------HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 00111111111100 000000 0122222222111 11 0 11 1111222
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChH
Q 007329 271 SGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNRE 350 (608)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (608)
..+.-.|+...|..-|+........++.. |-.+...|....+.++....|+...+.. +-++.+|..-...+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 23344677778888888777654333322 6666667778888888888888887765 557778888888888888888
Q ss_pred HHHHHHhhCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 007329 351 EGEKVFSRMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 351 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (608)
+|..-|++..+- ++..|-.+-.+.-+.+++++++..|++...+ ++--+..|+.....+...++++.|.+.|+..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 888888887763 3444555555556677888888888887765 333456777777888888888888888887765
Q ss_pred hCCC-------CchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 428 TGLI-------SYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 428 ~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
.... +.+.+...++..- -.+++..|..++.+..+-|+ ..|..|.....+.|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4322 1111122222222 23666666666666655443 345566666666666666666666554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-08 Score=96.57 Aligned_cols=174 Identities=9% Similarity=0.033 Sum_probs=109.3
Q ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhc-CCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHh
Q 007329 62 NPNSRLNELCLNGSLEQALKYLDSMQEL-NICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMF 140 (608)
Q Consensus 62 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (608)
.|-.-++.+.++|+...-...|++.++. -+......|...+......+-++-+..+++..++..+. .-+-.|..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~----~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE----AREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH----HHHHHHHHH
Confidence 3555566777888888888888877552 33335566777777777788888888888887776543 245667778
Q ss_pred hhcCChhhHHHHHcccCCC----------CcchHHHHHHHHHhcCChhH---HHHHHHHHHhcCCCCCCc--chHHHHHH
Q 007329 141 VKFGDLGHAWYVFGKMCDR----------DLFSWNVLIGGYAKAGFFDE---ALSLYQRMFWVGGVKPDV--YTFPCVLR 205 (608)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~~p~~--~~~~~ll~ 205 (608)
++.+++++|-+.+..+... +-..|..+-+..++.-+.-. ...+++.+.. .-+|. ..|..|..
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLAD 256 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHH
Confidence 8888888888888877432 23345555555544433222 2233333322 23443 35667777
Q ss_pred HhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007329 206 TCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVK 244 (608)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 244 (608)
-|.+.|.++.|..++++.+.. ..++.-|..+.+.|+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 788888888888888777665 2334444455555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-10 Score=102.67 Aligned_cols=276 Identities=10% Similarity=0.063 Sum_probs=180.6
Q ss_pred hcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHH
Q 007329 244 KCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREV 320 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 320 (608)
..|++.+|+++..+-.+. ....|-.-+.+--+.|+.+.+-.++.+.-+.--.++...+.+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 469999999999876543 44566666777888999999999999998864456666777777888999999999999
Q ss_pred HHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCCh-----------hhHHHHHHHHHcCCCchHHHHHHHH
Q 007329 321 HGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDV-----------VSWTTMISCYEGSVLPDKAVETYQM 389 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a~~~~~~ 389 (608)
+.++.+.+ +-++.+......+|.+.|++.....++..+.+... .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 99999886 66788889999999999999999999999987322 2455555555555554554445554
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcc
Q 007329 390 MEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVI 466 (608)
Q Consensus 390 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 466 (608)
.... .+-++..-..++.-+.+.|+.++|.++..+..+.+..++... .-.+.+-++.+.-.+..+.-. ..++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 4332 344555666677777777777777777777777766655111 112223333333333222211 22334
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
.+.+|...|.+++.+.+|.+.|+... ...|+..+|+.+..++.+.|+..+|.++.++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl-~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAAL-KLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH-hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45555555555555555555555444 445555555555555555555555555555444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-08 Score=96.77 Aligned_cols=282 Identities=14% Similarity=0.095 Sum_probs=149.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHH
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIK 341 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (608)
++........-+...+++.+..++++...+. .++....+..=|.++...|+..+-..+=..+++. .+..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3334444455555666666666666666554 2333444444444555666655555555555544 2445566666666
Q ss_pred HHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 007329 342 MYLSFGNREEGEKVFSRMESKD---VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLG 418 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 418 (608)
.|.-.|+..+|.+.|.+...-| ...|-.+...|.-.|..++|+..+...-+.- +-...-+..+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 6666666666666666654422 2346666666666666666666665544421 11111122233345555666666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 419 IKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
.++|.+..... +.|+.+.+-+.-.....+.+.+|..+|+.... ..+.......--
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~e~~~w 454 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLNEKIFW 454 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhccccccch
Confidence 66666555433 44455555555555555555555555554321 000000001112
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLT 572 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~ 572 (608)
..+++.|..+|.+.+.+++|+..+++.+...++ +..++.+++-.|...|+++.|.+.|.+. .||..+-..++.
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 345566666666666666666666666665554 6666666666666666666666666665 555544444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-09 Score=93.62 Aligned_cols=453 Identities=11% Similarity=0.076 Sum_probs=285.6
Q ss_pred HHHhhhcCChhhHHHHHcccCCCC---cchHH-HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCC
Q 007329 137 LSMFVKFGDLGHAWYVFGKMCDRD---LFSWN-VLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPD 212 (608)
Q Consensus 137 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~ 212 (608)
+.-+....++..|+.+++--...+ ....+ .+..++.+.|++++|+..+..+.+.. .|+......+.-+..-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHH
Confidence 445667789999999987653211 11223 34556778999999999999987754 6777776666666667788
Q ss_pred hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007329 213 LKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREV 292 (608)
Q Consensus 213 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 292 (608)
+.+|+++-... +.+......|...-.+.|+-++-..+-+.+.+.. .---+|.......-.+++|++++.+....
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888876543 2333444455566667788777777666665432 22223444444455789999999998875
Q ss_pred CCCCChhHHHHHH-HHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHH
Q 007329 293 LVDPDFMTLSSVI-SASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMI 371 (608)
Q Consensus 293 ~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 371 (608)
.|+-...+.-+ -+|.+..-++.+.++++-..+. ++.++...|.......+.=+-..|+.-.+++...-...| ..+
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f~ 256 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PFI 256 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hhH
Confidence 34444555443 4566888888888888877665 233344444444443333221222222222221111111 122
Q ss_pred HHHHcC-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH---
Q 007329 372 SCYEGS-----VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM--- 443 (608)
Q Consensus 372 ~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--- 443 (608)
.-.++. ..-+.|++++-.+.+. .|.. -..|+-.|.+.+++.+|..+.+++.- ..|-..+...++.+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG 330 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh
Confidence 233333 2447888887666653 3332 23455568899999999988765431 12222222222221
Q ss_pred --hHhcCCHHHHHHHHccCCC-----CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 444 --YSKCKCIDKALEVFHQIPD-----KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 444 --~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
......+.-|...|+-.-+ ..+.--.++..++.-..++++.+..+..+..-+..|..--..+..+.+..|.+.
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChH
Confidence 1122335556677765442 233345567777777788999998888887445555555556889999999999
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-CC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 517 CGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ER-DVS-AWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+|+++|-++....++-+..-...|..+|.+.|+.+.|++++-++ .| +.. ....+.+-|.+.|++=-|...|+.+...
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 99999988877666633333445788999999999999999998 22 333 3445667799999999999999999888
Q ss_pred CCCCCchhhhhccc
Q 007329 594 KGNWRKLMGLFRKC 607 (608)
Q Consensus 594 g~~p~~~~~~~~ac 607 (608)
+..|+...+...||
T Consensus 491 DP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 491 DPTPENWEGKRGAC 504 (557)
T ss_pred CCCccccCCccchH
Confidence 78888876666666
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-09 Score=96.25 Aligned_cols=216 Identities=13% Similarity=0.113 Sum_probs=121.7
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCCHHH
Q 007329 174 AGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD---VDVVNALITMYVKCGDLVR 250 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~ 250 (608)
.++.++|.++|-+|.+.. +-...+--++.+.|.+.|.++.|..+.+.+.+..--+. ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 356677777777776532 33334444566666677777777777776665421111 2234456677888888899
Q ss_pred HHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChh----HHHHHHHHHhhcCChhhHHHHHHH
Q 007329 251 ARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFM----TLSSVISASELVGDEKLGREVHGY 323 (608)
Q Consensus 251 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~ 323 (608)
|+.+|..+.+. -......|+..|-...+|++|+++-+++.+.+-.+... .|.-+...+....+.+.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99988888774 34466778888888999999999888888765444332 233344444444555566665555
Q ss_pred HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChh----hHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007329 324 VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV----SWTTMISCYEGSVLPDKAVETYQMMEA 392 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (608)
..+.. +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++....+..+.+
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 55443 222222233344444445555554444444442221 233333444444444444444444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-10 Score=98.37 Aligned_cols=215 Identities=14% Similarity=0.139 Sum_probs=100.8
Q ss_pred CCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC-CCcc------hHHHHHHHHHhcCChhHHH
Q 007329 109 RGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD-RDLF------SWNVLIGGYAKAGFFDEAL 181 (608)
Q Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~a~ 181 (608)
++.++|..+|-+|.+..++ +..+.-+|.+.|-+.|..+.|+++-+.+.+ ||.. +.-.|..-|...|-+|.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3455555555555553322 233444555555555555555555555432 3221 2233444555566666666
Q ss_pred HHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHcc
Q 007329 182 SLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADV----DVVNALITMYVKCGDLVRARLVFDG 257 (608)
Q Consensus 182 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 257 (608)
++|..+...+ .--......++..|-...+|++|.++-+++.+.|..+.. ..|.-|...+....+++.|..++.+
T Consensus 128 ~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 128 DIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 6666655433 222334445555555555565555555555555433321 2233344444444555555555544
Q ss_pred CCCCC---HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 258 MPKRD---RISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 258 ~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
..+.| +..--.+.+.....|++++|++.++...+.+..--..+...|..+|...|+.++....+..+.+
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 43321 2222233344455555555555555555443222233334444444444444444444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-08 Score=94.73 Aligned_cols=454 Identities=14% Similarity=0.148 Sum_probs=260.0
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCC-----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHH
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCD-----RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVL 204 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll 204 (608)
+..|-..+..+.++|++..-+..|+.... .....|...+...-..|-++-++.++++..+ +.|. .-.--|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~--~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPE--AREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHH--HHHHHH
Confidence 45566667777778888887777776522 3445677778777778888888888888764 2333 356667
Q ss_pred HHhcCCCChhhHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCCH---HHHHHHHccCCCC--C--HhHHHHHHH
Q 007329 205 RTCGGVPDLKRGKEVHVHVIRF------GYEADVDVVNALITMYVKCGDL---VRARLVFDGMPKR--D--RISWNAMIS 271 (608)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~ 271 (608)
..++..+++++|.+.+...+.. ..+.+...|..+.+...+.-+. -....+++.+..+ | ...|+.|.+
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 7778888888888887776632 1255566677776666655332 2344555655554 2 346888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCC----------------------hhhHHHHHHHHHHhCC
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGD----------------------EKLGREVHGYVIKMGF 329 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~ 329 (608)
-|.+.|.+++|.++|++-... ..+..-|+.+..+|+.-.. ++....-|+.+...+.
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 888888888888888877664 2233334444444332111 1122222333222210
Q ss_pred -----------CCCcccchHHHHHHHhcCChHHHHHHHhhCCC---C------ChhhHHHHHHHHHcCCCchHHHHHHHH
Q 007329 330 -----------SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---K------DVVSWTTMISCYEGSVLPDKAVETYQM 389 (608)
Q Consensus 330 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~a~~~~~~ 389 (608)
+.+...|..-+ -+..|+..+....|.+... | -...|..+.+.|-..|+.+.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11111111111 1122444444444444432 1 123577777888888888888888888
Q ss_pred HHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHh-----------CCCC------chhHHHHHHHHhHhcCC
Q 007329 390 MEAEGSMPD---EITIASVLSACACLGNLDLGIKLHQLAMRT-----------GLIS------YIIIANTLIDMYSKCKC 449 (608)
Q Consensus 390 m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~li~~~~~~g~ 449 (608)
......+-- ..+|......=.+..+++.|..+++..... +.++ +..+|..+++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 776543321 233444444445667777787777655421 1111 23455556666666788
Q ss_pred HHHHHHHHccCCCCCcccHHHHH---HHHHhCCCchHHHHHHHHhHhCCC-CC-HHHHHHHHHHHhc---cCcHHHHHHH
Q 007329 450 IDKALEVFHQIPDKNVISWTSII---LGLRLNNRSFEALIFFRKMMLNLK-PN-SVTLVSILSACAR---IGALMCGKEI 521 (608)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~-p~-~~~~~~ll~~~~~---~~~~~~a~~~ 521 (608)
++....+++++.+-.+.|=..++ .-+-.+.-++++.+.|++-+.-++ |+ ...|+..+.-+.+ ...+++|..+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 88888888887754443333333 233455567888888887763333 23 2355555555543 2467888888
Q ss_pred HHHHHHhCCCCCccH--HHHHHHHhHhcCCHHHHHHHHHhc----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 522 HAHALRIGVAFDGFL--PNALLDMYVRCGRMKPAWNQFNSN----ER--DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
|+++++ |..|...- |-.....=.+-|-...|+.+++++ ++ -...|+..|.--...=-+..-.++|++.++.
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 888888 44444322 212222223457778888888887 22 1345666665433322233345566666553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7e-08 Score=92.61 Aligned_cols=451 Identities=14% Similarity=0.062 Sum_probs=219.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhH--HHHHh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNA--FLSMF 140 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~ 140 (608)
..+-++.+.++|++++|.....++...+ +-+...+..-+-++.+.+.+++|+.+.+. .+. ..+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHH
Confidence 4555677778888888888888888744 34556677777778888888888755332 111 111122 23333
Q ss_pred --hhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc--hHHHHHHHhcCCCChhhH
Q 007329 141 --VKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY--TFPCVLRTCGGVPDLKRG 216 (608)
Q Consensus 141 --~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 216 (608)
.+.+..++|+..++...+.+..+...-...+.+.|++++|+.+|+.+.+.+ .+|.. .-..++.+-. +
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~--~dd~d~~~r~nl~a~~a-------~ 158 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN--SDDQDEERRANLLAVAA-------A 158 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHH-------h
Confidence 366888888888885544454455555667778888888888888886654 22211 1111111110 0
Q ss_pred HHHHHHHHHhCCCCchhHHHHH---HHHHHhcCCHHHHHHHHccCC--------CCCH-----h-----HHHHHHHHHHh
Q 007329 217 KEVHVHVIRFGYEADVDVVNAL---ITMYVKCGDLVRARLVFDGMP--------KRDR-----I-----SWNAMISGYFE 275 (608)
Q Consensus 217 ~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~ 275 (608)
... +.+......| ..+|..+ ...+...|++.+|+++++... +.|. . .--.|..++..
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 000 0122222222 2222222 233455667777776666541 1110 0 11123334445
Q ss_pred cCChhHHHHHHHHHHHCCCCCChhHHHHHHH---HHhhcCChhh--HHHHHHHHHHhCCCCCcccchHHHHHHHhcCChH
Q 007329 276 NGEYMKGLMLFIMMREVLVDPDFMTLSSVIS---ASELVGDEKL--GREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNRE 350 (608)
Q Consensus 276 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (608)
.|+.++|..++....+... +|........+ ++....++-. ++..++.. ...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~-----------------------~~~ 292 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ-----------------------VFK 292 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHH-----------------------HHH
Confidence 5555555555555554422 22221111111 1111111100 00000000 000
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCChHHHHHHHHHH
Q 007329 351 EGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC--LGNLDLGIKLHQLA 425 (608)
Q Consensus 351 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~ 425 (608)
-+..+...+.. .....-+.++..|.. ..+.+.++...... ..|. ..+..++..+.+ ......+.+++...
T Consensus 293 l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 293 LAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQF 367 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 01111111111 111111222222222 12333333222211 1222 233334433322 12345555555554
Q ss_pred HHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc--------cCCC--CCcccHHHHHHHHHhCCCchHHHHHHHHhH---
Q 007329 426 MRTGLISYIIIANTLIDMYSKCKCIDKALEVFH--------QIPD--KNVISWTSIILGLRLNNRSFEALIFFRKMM--- 492 (608)
Q Consensus 426 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--- 492 (608)
.+....-...+.-..+......|+++.|.+++. .+.+ ..+.+..++...+.+.++.+.|..++.+..
T Consensus 368 ~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 368 ADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 443322234455556666677777777777777 3321 233455556666666666666666666665
Q ss_pred hCCCCCHHHHHHHHHH----HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCC
Q 007329 493 LNLKPNSVTLVSILSA----CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNER 562 (608)
Q Consensus 493 ~~~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (608)
....+......++++- -.+.|+-++|..+++++.+.++. |..+...++.+|++. +.+.|..+-+.+.|
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 2233333434443332 24568888888888888876654 777777788877764 56777777777633
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-08 Score=94.88 Aligned_cols=409 Identities=12% Similarity=0.079 Sum_probs=234.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHH--HHHHH--H
Q 007329 168 IGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNA--LITMY--V 243 (608)
Q Consensus 168 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~ 243 (608)
++-+...|++++|.+...++...+ +-|...+..-+-++.+.+.+++|+.+.+.-.. ..+++. +=.+| .
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 445566777888888888777543 45556667777777788888877754442111 111111 23344 4
Q ss_pred hcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhHHHHHHHHHhhcCChhhHHHHHH
Q 007329 244 KCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD-FMTLSSVISASELVGDEKLGREVHG 322 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 322 (608)
+.+..++|+..++...+.|..+...-...+.+.|++++|+++|+.+.+.+..-- ...-..++.+-.. -.+ +
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----H
Confidence 678899999999866666766777777888899999999999999877643211 1111112111110 001 0
Q ss_pred HHHHhCCCCCcccchH---HHHHHHhcCChHHHHHHHhhCC--------CCC-----hh-----hHHHHHHHHHcCCCch
Q 007329 323 YVIKMGFSDDVSVCNP---LIKMYLSFGNREEGEKVFSRME--------SKD-----VV-----SWTTMISCYEGSVLPD 381 (608)
Q Consensus 323 ~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~--------~~~-----~~-----~~~~li~~~~~~~~~~ 381 (608)
.+......| ..+|.. ....+...|++.+|+++++... ..| .. .-..|...+...|+..
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111222222 223333 3445667789999999888772 111 11 1223444667789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH---HHHHHccCChHH--HHHHHHH-----------HHHhCCCCchhHHHHHHHHhH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASV---LSACACLGNLDL--GIKLHQL-----------AMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~li~~~~ 445 (608)
+|..++...+... .+|....... |.+.....++-. ++..++. +......-....-+.++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~- 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF- 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999988875 3344322222 222222222111 1111111 11111111122223444444
Q ss_pred hcCCHHHHHHHHccCCCCC-cccHHHHHHHH--HhCCCchHHHHHHHHhHhCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPDKN-VISWTSIILGL--RLNNRSFEALIFFRKMMLNLKPN-SVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~A~~~~~~m~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
.+..+.+.++-....... ...+.+++..+ ++...+.+|.+++.....+.+-+ ..+....+......|+++.|.++
T Consensus 320 -tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 320 -TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred -hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 355567777766666432 23344444332 22335677777777776454444 44555666777888999999988
Q ss_pred HH--------HHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-------CCC----HHHHHHHHHHHHhcCCHHH
Q 007329 522 HA--------HALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-------ERD----VSAWNILLTGYAERGQGAL 582 (608)
Q Consensus 522 ~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~----~~~~~~l~~~~~~~g~~~~ 582 (608)
+. .+.+.+.. +.+...++..|.+.++.+.|.+++.+. .+. ..+|.-++..-.+.|+-++
T Consensus 399 l~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 88 44444444 445566778888888877777777665 222 2345555555667799999
Q ss_pred HHHHHHHHHHcCCCCCch
Q 007329 583 AEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 583 A~~~~~~m~~~g~~p~~~ 600 (608)
|..+++++.+. .|++.
T Consensus 477 a~s~leel~k~--n~~d~ 492 (652)
T KOG2376|consen 477 ASSLLEELVKF--NPNDT 492 (652)
T ss_pred HHHHHHHHHHh--CCchH
Confidence 99999999874 55555
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-08 Score=88.51 Aligned_cols=447 Identities=12% Similarity=0.011 Sum_probs=255.0
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHH-HHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCC
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVN-LVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGD 145 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (608)
+..+..+.++..|+.+++.-...+-.-. ..... +..++...|++++|...+..+.... .++...+..|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 7788889999999999987664333222 23333 3345678899999999998877743 4566666666666667789
Q ss_pred hhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 146 LGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 146 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
+.+|..+-.+.++ ++..-..|+...-+.|+-++-..+-+.+... . ..-.++.......-++++|.+++.....
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~---~---EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---L---EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---H---HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988877644 2333445555566677776666665554321 1 1122333333344467788888887776
Q ss_pred hCCCCchhHHHHH-HHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHH
Q 007329 226 FGYEADVDVVNAL-ITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTL 301 (608)
Q Consensus 226 ~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 301 (608)
. .|.-...|.- .-+|.+.+-++-+.+++.-... .++..-|..+....+.=.-..|.+-..++.+.+-..-.. .
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f-~ 256 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF-I 256 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh-H
Confidence 5 2333333433 3345666666666555543332 244455555544444333333444444444332111000 0
Q ss_pred HHHH-HHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCC-
Q 007329 302 SSVI-SASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVL- 379 (608)
Q Consensus 302 ~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~- 379 (608)
.-++ +-+.--.+-+.|.+++--+.+. .|.. --.|+-.|.+.+++++|..+.+++....+.-|-.-.-.++..|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhh
Confidence 1111 1112224556666666555443 2322 23355567888999999998888876444433322223333333
Q ss_pred ------chHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH
Q 007329 380 ------PDKAVETYQMMEAEGSMPDEI-TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK 452 (608)
Q Consensus 380 ------~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 452 (608)
..-|.+.|+-.-+.+..-|.. --..+...+.-..++++++-.+..+...-...|...+| +..+++..|...+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHH
Confidence 233444444433333322211 11223333444456777777777666554444444444 6778888888888
Q ss_pred HHHHHccCCCCC---cccHHHH-HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHHHH
Q 007329 453 ALEVFHQIPDKN---VISWTSI-ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLV-SILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 453 A~~~~~~~~~~~---~~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
|.++|-.+..|+ -.+|-++ ..+|...+.++.|++++-++. -+.+..+.. .+..-|.+.+.+=-|-+.|+++..
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 888888877543 4566554 567788888888887776663 333333333 344667777877777777777776
Q ss_pred hCCCC
Q 007329 528 IGVAF 532 (608)
Q Consensus 528 ~~~~p 532 (608)
.++.|
T Consensus 490 lDP~p 494 (557)
T KOG3785|consen 490 LDPTP 494 (557)
T ss_pred cCCCc
Confidence 55443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-09 Score=100.51 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=109.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhC
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLN 478 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 478 (608)
+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+...+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444444332 22233444444444455555555554444331 1223444555555666
Q ss_pred CCchHHHHHHHHhHh--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 479 NRSFEALIFFRKMML--NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
|++++|.+.+++... ..+.....+..+..++...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666652 11223445556666777777777777777777765443 445666777777778888888877
Q ss_pred HHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 557 FNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 557 ~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
++++ +.+...+..++..+...|+.+.|..+.+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 192 LERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7776 33556666777777778888888887777754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-08 Score=90.93 Aligned_cols=301 Identities=11% Similarity=-0.034 Sum_probs=219.0
Q ss_pred CCChhHHHHHHHHHh--hcCChhhHHHHHHHHHHh-CCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHH-
Q 007329 295 DPDFMTLSSVISASE--LVGDEKLGREVHGYVIKM-GFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTM- 370 (608)
Q Consensus 295 ~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l- 370 (608)
.|+..+...-+.+++ ..++...+...+-.+... -++.|......+.+.+...|+.++|+..|+....-|+.+...|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 444444444444433 344444444444444333 3677888889999999999999999999999877555544333
Q ss_pred --HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC
Q 007329 371 --ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK 448 (608)
Q Consensus 371 --i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 448 (608)
...+.+.|+.+....+...+.... +-....|..-+.......+++.|+.+-++.++.+ +-+...+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 224567888898888888887653 1223334344445556778889998888877655 334444544456677889
Q ss_pred CHHHHHHHHccCC--C-CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHH-HHHhc-cCcHHHHHHHHH
Q 007329 449 CIDKALEVFHQIP--D-KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSIL-SACAR-IGALMCGKEIHA 523 (608)
Q Consensus 449 ~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll-~~~~~-~~~~~~a~~~~~ 523 (608)
+.++|.-.|.... . -+...|.-|+.+|...|++.+|.-+-.+....++.+..++..+. ..|.. -..-++|.++++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999998765 3 36689999999999999999999998888766777777777663 44443 334577888888
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
...+..+. -....+.+...+.+.|+.++++.++++. .||....+.|...+...+.+++|.+.|...++. .|++-
T Consensus 429 k~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~ 505 (564)
T KOG1174|consen 429 KSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK 505 (564)
T ss_pred hhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence 87765433 2334567788899999999999999988 899999999999999999999999999998875 66654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=80.89 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=44.1
Q ss_pred CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007329 362 KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC 411 (608)
Q Consensus 362 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 411 (608)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999999999999999999888874
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=80.18 Aligned_cols=50 Identities=30% Similarity=0.513 Sum_probs=45.8
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh
Q 007329 261 RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL 310 (608)
Q Consensus 261 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 310 (608)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999998874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-07 Score=94.20 Aligned_cols=489 Identities=13% Similarity=0.021 Sum_probs=248.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCChhhHHHHHH---HhhccCCchhh-------------------hHHHH----HHHHhcC
Q 007329 73 NGSLEQALKYLDSMQELNICVDEDALVNLVR---LCEWKRGYDEG-------------------LYLHS----VVSKTMS 126 (608)
Q Consensus 73 ~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~---~~~~~~~~~~a-------------------~~~~~----~~~~~~~ 126 (608)
.++.++++.-+......+...+..++..+-. .+...++.+++ ....- ++....+
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~ 319 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKF 319 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777766665555445544444433 22233444443 22211 1122223
Q ss_pred CcchhHHhHHHHHhhhcCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 127 HLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
..|..+|..+.-++.++|+++.+-+.|++... .....|+.+-..|.-.|.-..|+.+++.-.....-++|...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 44556666666666666666666666666532 234456666666666666666666666544322112222222222
Q ss_pred HHHhc-CCCChhhHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCC
Q 007329 204 LRTCG-GVPDLKRGKEVHVHVIRFG--Y--EADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGE 278 (608)
Q Consensus 204 l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (608)
-+.|. +.+.++++..+-.+.++.. . ......|..+.-+|...-.- .+.. --+...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~------------a~~~--------seR~~~ 459 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ------------ANLK--------SERDAL 459 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc------------CCCh--------HHHHHH
Confidence 22232 3345555555544444411 0 01111222222222111000 0000 000111
Q ss_pred hhHHHHHHHHHHHCC-CCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHh
Q 007329 279 YMKGLMLFIMMREVL-VDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFS 357 (608)
Q Consensus 279 ~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 357 (608)
..++++.+++..+.+ -.|+...|..+ -++..++.+.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 334555555554432 22333333222 344556666666666666666545566666666666666666666666665
Q ss_pred hCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCC
Q 007329 358 RMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMR--TGLIS 432 (608)
Q Consensus 358 ~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~ 432 (608)
..... |......-+..-..-++.++++.....+...= -+...+...+. .| ...+....+.- .....
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~q~~~~----~g---~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGVQQTLD----EG---KLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhHhhhhh----hh---hhhhhhcccccCcccccc
Confidence 54431 11111111222223455566655555544310 00000000000 11 11111111110 01111
Q ss_pred chhHHHHHHHHh---HhcCCHHHHHHHHccCCCCC------cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHH
Q 007329 433 YIIIANTLIDMY---SKCKCIDKALEVFHQIPDKN------VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLV 503 (608)
Q Consensus 433 ~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~ 503 (608)
...++..+.... .+.-..+..+..+.....|+ ...|......+.+.+..++|...+.+...-.+-....|.
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~ 688 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY 688 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence 112222221111 11111112211122222222 124556667788888999999888888744444666777
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH--HHHhc----CCCHHHHHHHHHHHHhc
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN--QFNSN----ERDVSAWNILLTGYAER 577 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~----~~~~~~~~~l~~~~~~~ 577 (608)
.....+...|..++|.+.|..+...++. ++....++..++.+.|+..-|.. ++..+ +.+...|..+...+.+.
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 7777888889999999999988876665 56778889999999998777777 88777 55788999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 007329 578 GQGALAEEFFRKMIDS 593 (608)
Q Consensus 578 g~~~~A~~~~~~m~~~ 593 (608)
|+.++|.+.|....+.
T Consensus 768 Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQL 783 (799)
T ss_pred cchHHHHHHHHHHHhh
Confidence 9999999999988764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.2e-07 Score=90.37 Aligned_cols=438 Identities=15% Similarity=0.122 Sum_probs=235.0
Q ss_pred ccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHH
Q 007329 107 WKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSL 183 (608)
Q Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 183 (608)
..+++..+++..+.+++..++. ..+.....-.+...|+-++|......-.. .+.++|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eH-geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEH-GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCcc-chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3556666666666666533321 12222222223445777777776665544 3456777777777777788888888
Q ss_pred HHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---
Q 007329 184 YQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK--- 260 (608)
Q Consensus 184 ~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 260 (608)
|......+ +-|...+.-+ .-.-.+.|+++..........+
T Consensus 98 y~nAl~~~--~dN~qilrDl-----------------------------------slLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 98 YRNALKIE--KDNLQILRDL-----------------------------------SLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHhcC--CCcHHHHHHH-----------------------------------HHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 88777543 2232333222 2222333333333322222221
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhHHHHHHH------HHhhcCChhhHHHHHHHHHHhCCCCCc
Q 007329 261 RDRISWNAMISGYFENGEYMKGLMLFIMMREVL-VDPDFMTLSSVIS------ASELVGDEKLGREVHGYVIKMGFSDDV 333 (608)
Q Consensus 261 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 333 (608)
.....|..++.++.-.|+...|..++++..+.. -.|+...|..... .....|..+.|.+.+..-... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 233456666666666677777777777666543 2345444433322 234455666666555443322 11122
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHH-HHHcCCCchHHH-HHHHHHHHCCCCCCHHHHHHH-HHH
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMIS-CYEGSVLPDKAV-ETYQMMEAEGSMPDEITIASV-LSA 408 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~-~~~~~~~~~~a~-~~~~~m~~~g~~p~~~t~~~l-l~~ 408 (608)
..-..-...+.+.+++++|..++..+.. ||...|...+. ++.+-.+.-++. .+|....+.- |.......+ +..
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSV 297 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHH
Confidence 2223445666777888888888887766 55555554443 333333333333 5555544431 111110000 111
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH----HHHHHccCC--------------CCCcccHH-
Q 007329 409 CACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK----ALEVFHQIP--------------DKNVISWT- 469 (608)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~--------------~~~~~~~~- 469 (608)
.....-.+..-.++....+.|+++- +..+...|-.-...+- +..+...+. .|....|+
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 1111222333445555556665432 2223333322111110 111111111 23333343
Q ss_pred -HHHHHHHhCCCchHHHHHHHHhHhCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 470 -SIILGLRLNNRSFEALIFFRKMMLNLKPNSV-TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 470 -~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
.++..+-..|+++.|..+++... +..|+.+ -|..-.+.+...|++++|..+++++.+.+.. |..+-..-+.-..++
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AI-dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAI-DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHc
Confidence 46777888999999999999988 5555544 5666678888999999999999999887644 666655667777889
Q ss_pred CCHHHHHHHHHhc-CC--CHH--------HHHHH--HHHHHhcCCHHHHHHHHHHH
Q 007329 548 GRMKPAWNQFNSN-ER--DVS--------AWNIL--LTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 548 g~~~~A~~~~~~~-~~--~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~m 590 (608)
++.++|.++.... +. +.+ .|-.+ ..+|.+.|++.+|+.-|...
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 9999999998887 11 211 34333 44578888888777655544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-09 Score=97.55 Aligned_cols=193 Identities=10% Similarity=-0.060 Sum_probs=133.8
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 007329 365 VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMY 444 (608)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 444 (608)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|.+.++...+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344555566666677777777776666543 2234555666666777777777777777666654 33445566666677
Q ss_pred HhcCCHHHHHHHHccCCC-----CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 445 SKCKCIDKALEVFHQIPD-----KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
...|++++|.+.+++..+ .....+..+...+...|++++|...+++.....+.+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777776653 123456667777888888888888888887444445667888888888889999999
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..++++.+.. ..+...+..++..+...|+.++|..+++.+
T Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9988888763 335566667778888889999988877664
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-08 Score=99.88 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=114.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007329 369 TMISCYEGSVLPDKAVETYQMMEAE-----GS-MPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLI 441 (608)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 441 (608)
.+...|...+++++|..+|+++... |- .|. ..++..|...|.+.|++++|...++.+.+---+.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--------- 316 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--------- 316 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh---------
Confidence 3555677777777777777776542 21 111 2356666667788888887777766544310000
Q ss_pred HHhHhcCCHHHHHHHHccCCCCCc-ccHHHHHHHHHhCCCchHHHHHHHHhH----hCCCCC----HHHHHHHHHHHhcc
Q 007329 442 DMYSKCKCIDKALEVFHQIPDKNV-ISWTSIILGLRLNNRSFEALIFFRKMM----LNLKPN----SVTLVSILSACARI 512 (608)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~----~~~~p~----~~~~~~ll~~~~~~ 512 (608)
+. ...+.+ ..++.++..+...+++++|..++++.. ....++ ..+++.|...|...
T Consensus 317 --~~--------------~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~ 380 (508)
T KOG1840|consen 317 --LG--------------ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKM 380 (508)
T ss_pred --hc--------------cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 00 000111 112333444444555555555555443 112222 34677777777777
Q ss_pred CcHHHHHHHHHHHHHh----CCC--C-CccHHHHHHHHhHhcCCHHHHHHHHHhc-------CC---C-HHHHHHHHHHH
Q 007329 513 GALMCGKEIHAHALRI----GVA--F-DGFLPNALLDMYVRCGRMKPAWNQFNSN-------ER---D-VSAWNILLTGY 574 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~---~-~~~~~~l~~~~ 574 (608)
|++++|.++++.++.. +.. + ....++.|...|.+.+++++|.++|.+. .| + ..+|..|...|
T Consensus 381 gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y 460 (508)
T KOG1840|consen 381 GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY 460 (508)
T ss_pred cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 7777777777766532 121 1 1344566777777777777777777654 22 2 34788888889
Q ss_pred HhcCCHHHHHHHHHHHH
Q 007329 575 AERGQGALAEEFFRKMI 591 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~ 591 (608)
...|+++.|.++.+...
T Consensus 461 ~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 461 RAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHcccHHHHHHHHHHHH
Confidence 99999999988887765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-09 Score=109.44 Aligned_cols=209 Identities=10% Similarity=-0.047 Sum_probs=143.2
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVF 457 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (608)
+++++|...+++..+.. +-+...+..+...+...|++++|...++.+.+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44678888888888764 2255667777777788888888888888888776 455666777788888888888888888
Q ss_pred ccCCC--CCc-ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC
Q 007329 458 HQIPD--KNV-ISWTSIILGLRLNNRSFEALIFFRKMMLNLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD 533 (608)
Q Consensus 458 ~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 533 (608)
++..+ |+. ..+..++..+...|++++|+..+++.....+| +...+..+..++...|++++|...++++....+. +
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~ 474 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-G 474 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-h
Confidence 88764 332 22334444566678889999998888744445 4445667777888889999999998877554322 3
Q ss_pred ccHHHHHHHHhHhcCCHHHHHHHHHhc------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 534 GFLPNALLDMYVRCGRMKPAWNQFNSN------ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
....+.+...|...| ++|...++.+ .+...-+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 344455666777777 4777766666 2222333 33445557777777666 8887764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-07 Score=87.24 Aligned_cols=448 Identities=11% Similarity=0.017 Sum_probs=273.7
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (608)
+.-+...+++...+++.+.+.. +..-...+....--.+...|+-++|.......++.++. +.+-|..+.-.+....++
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhH
Confidence 3445567889999999998887 44334555554444556688999998887766664433 445567666666666899
Q ss_pred hhHHHHHcccC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHH
Q 007329 147 GHAWYVFGKMC---DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHV 223 (608)
Q Consensus 147 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 223 (608)
++|++.|.... +.|...|..+--.-++.|+++..........+.. +-....|.....+..-.|+...|..++++.
T Consensus 92 ~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 92 DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998773 3566677776666678888888888888877653 445667778888888889999999999998
Q ss_pred HHhCC-CCchhHHHHHH------HHHHhcCCHHHHHHHHccCCCC--CHh-HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007329 224 IRFGY-EADVDVVNALI------TMYVKCGDLVRARLVFDGMPKR--DRI-SWNAMISGYFENGEYMKGLMLFIMMREVL 293 (608)
Q Consensus 224 ~~~g~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 293 (608)
.+... .|+...+.... ....+.|..++|.+.+...... |-. .-..-...+.+.++.++|..++..+...
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r- 248 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER- 248 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-
Confidence 87652 45555444332 3345678888888888776554 222 3334566788899999999999999886
Q ss_pred CCCChhHHHHHHHHHh-hcCC-hhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC-hHHHHHHHhhCCCC-ChhhHHH
Q 007329 294 VDPDFMTLSSVISASE-LVGD-EKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN-REEGEKVFSRMESK-DVVSWTT 369 (608)
Q Consensus 294 ~~p~~~~~~~ll~~~~-~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~ 369 (608)
.||...|...+..+. +..+ .+....+|....+. .|....-..+--......+ .+...+++..+.+. -+.++..
T Consensus 249 -nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 249 -NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred -CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 577777666555443 3333 33333566555433 1111111111001111111 22223333333322 1223333
Q ss_pred HHHHHHcCCCchHHHHHHHHHHH----CC----------CCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc
Q 007329 370 MISCYEGSVLPDKAVETYQMMEA----EG----------SMPDE--ITIASVLSACACLGNLDLGIKLHQLAMRTGLISY 433 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~----~g----------~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (608)
+...|-.....+-..++...+.. .| -.|.. .|+-.++..+-+.|+++.|..+++..+++- +.-
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTl 404 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTL 404 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chH
Confidence 33333322222211112211111 11 03333 355567788888999999999998887653 333
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHH-----
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVS----- 504 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~----- 504 (608)
+..|..-.+++...|++++|...+++..+ +|...-.--.....+.++.++|.++..... +|. +......
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcm 482 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCM 482 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhH
Confidence 45566666788888999999999988775 333333345666778888888888888777 443 2221111
Q ss_pred -----HHHHHhccCcHHHHHHHHHHH
Q 007329 505 -----ILSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 505 -----ll~~~~~~~~~~~a~~~~~~~ 525 (608)
=..+|.+.|++..|++-+..+
T Consensus 483 Wf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 483 WFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 124566677776666544433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.2e-09 Score=94.94 Aligned_cols=229 Identities=14% Similarity=0.052 Sum_probs=180.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
.-+.+.++|.+.|.+.+|.+.|+.-... .|-..||..|-.+|.+..+...|+.++.+..+.- +.++....-....+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3466778888999999999888887776 5667788888888999999999988888777643 445555556677777
Q ss_pred hcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIH 522 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 522 (608)
..++.++|.++++...+ .++.....+...|.-.++++-|+.+|++++.--.-++..|+.+.-+|...++++-++.-|
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88889999999887764 345556666778888899999999999998444457778888999999999999999999
Q ss_pred HHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007329 523 AHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGN 596 (608)
Q Consensus 523 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 596 (608)
+++...--.|+ ..+|-.|.......||+..|.+.|+-+ ..+...++.|.-.-.+.|+.++|..+++..... .
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV--M 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--C
Confidence 98887655554 345666777788889999999999887 335678898888888999999999999988764 5
Q ss_pred CCc
Q 007329 597 WRK 599 (608)
Q Consensus 597 p~~ 599 (608)
|+.
T Consensus 460 P~m 462 (478)
T KOG1129|consen 460 PDM 462 (478)
T ss_pred ccc
Confidence 554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-07 Score=92.97 Aligned_cols=347 Identities=13% Similarity=0.098 Sum_probs=217.3
Q ss_pred CcchHHHHHHHhcCCCChhhHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHH
Q 007329 196 DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG--YEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGY 273 (608)
Q Consensus 196 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 273 (608)
|+...+..++++...+-..+-.+++++++-.. +.-+...-|.|+-...+. +.....+..+++..-|.. .+....
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHH
Confidence 44455566666666666666666666655321 122233334444433333 344455555555433221 133445
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGE 353 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (608)
..++-+++|..+|++.. .+......++. ..+..+.|.++-+.. ..+.+|..+..+-.+.|.+.+|.
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHH
Confidence 55667778888877653 24445555554 234555555554432 24567788888888888888887
Q ss_pred HHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc
Q 007329 354 KVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY 433 (608)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (608)
+-|-+. .|+..|..++....+.|.|++-.+.+....++.-.|... +.|+-+|++.+++.+.++++. -|+
T Consensus 1125 eSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1125 ESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred HHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 766544 455667778888888888888888777766665555544 356777888777766655542 566
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
......+.+-|...|.++.|.-+|.. +..|.-|...+...|++..|...-++. .+..||..+-.+|...+
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchh
Confidence 66667777777778888888777754 446777888888888888888777665 36678888888898877
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
.+.-| ++.-.++.....-...|+..|...|-+++-..+++.. ....-.|+.|.-.|.+- ++++-.+-+
T Consensus 1264 EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1264 EFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred hhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 66544 2333333344555667899999999999999988876 23344555555444443 344433333
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.1e-09 Score=108.67 Aligned_cols=262 Identities=8% Similarity=-0.071 Sum_probs=169.6
Q ss_pred CChhhHHHHHHHhh-----ccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhh---------hcCChhhHHHHHcccCC
Q 007329 93 VDEDALVNLVRLCE-----WKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFV---------KFGDLGHAWYVFGKMCD 158 (608)
Q Consensus 93 ~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 158 (608)
.+...|...+++.. ..+++++|..+++..++..+. +...|..+..++. ..+++++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455544444321 234678888888888877654 2344444444333 23457888888888744
Q ss_pred ---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHH
Q 007329 159 ---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVV 235 (608)
Q Consensus 159 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 235 (608)
.+..+|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...++..++.... +...+
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 355677777778888899999999999888754 344556777778888889999999999988887533 22233
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCC---C-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhh
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPK---R-DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMT-LSSVISASEL 310 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~ 310 (608)
..++..+...|++++|...+++... + ++..+..+...+...|+.++|...+.++... .|+..+ .+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 3444456667888989888877642 2 4556777788888899999999998887553 344333 3334445566
Q ss_pred cCChhhHHHHHHHHHHhC-CCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChh
Q 007329 311 VGDEKLGREVHGYVIKMG-FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV 365 (608)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (608)
.| +.+...++.+.+.. ..+... ..+-..|.-.|+-+.+..+ +++.+.+..
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 538 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNP--GLLPLVLVAHGEAIAEKMW-NKFKNEDNI 538 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCc--hHHHHHHHHHhhhHHHHHH-HHhhccchH
Confidence 66 46777666665432 112111 2244555666777777666 777664433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-07 Score=88.35 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..|..||..+....++..|-+.+++|...
T Consensus 1331 ~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1331 RLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 47889999999999999999999999876
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=96.17 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=169.0
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccC
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA-SVLSACACLG 413 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~ 413 (608)
+.+..+|.+.|-+.+|.+.|+...+ |-+.||-.|-+.|.+..+++.|+.++.+-.+. .|-.+||. -..+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 4577788888888888888877654 67778888888888888888888888887765 45556653 4556677778
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHH
Q 007329 414 NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRK 490 (608)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (608)
+.+.+.++++...+.. +.+++...++...|.-.++.+-|++.+.++.+ .++..|+.+.-+|.-.+++|-++..|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 8888888888887765 55666666677777778888888888887664 5667788888888888888888888888
Q ss_pred hH-hCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 491 MM-LNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 491 m~-~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+ ..-.|+ ...|..+.......|++.-|.+.|+-....+.. +...++.|.-.-.+.|++++|..++..+
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 87 222233 346777777778889999999999888876655 5677888888888899999999988877
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.2e-06 Score=85.50 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=94.9
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
+..|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.+++-.+++.++++..-.|... +.||-+|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 457999999999999999999888765 477789999999999999999999999999887776655 5799999
Q ss_pred HhcCCHHHHHHHHHhc------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 545 VRCGRMKPAWNQFNSN------------------------ERDVSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
++.+++.+-.+.+..- -.+...|..|...+...|+++.|.+..++.
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999877765321 113445667777777888888877766654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-07 Score=92.71 Aligned_cols=251 Identities=14% Similarity=0.062 Sum_probs=119.0
Q ss_pred HHhhhcCChhhHHHHHcccCC--CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc------
Q 007329 138 SMFVKFGDLGHAWYVFGKMCD--RDLF-SWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG------ 208 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~------ 208 (608)
..+...|++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|...+..+.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhccc
Confidence 445677888888888776533 3433 34555667777888888888888887754 55555544443333
Q ss_pred CCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH-HHHHHHccCCCCCH-hHHHHHHHHHHhcCChhHHHHHH
Q 007329 209 GVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLV-RARLVFDGMPKRDR-ISWNAMISGYFENGEYMKGLMLF 286 (608)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~ 286 (608)
...+.+...++++++.+.- |.......+.-.+.....+. .+...+..+..+.+ .+++.+-..|....+..-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 1224556666666665542 22222222211111111221 22233333333332 34444444444333333334444
Q ss_pred HHHHHC----C----------CCCCh--hHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChH
Q 007329 287 IMMREV----L----------VDPDF--MTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNRE 350 (608)
Q Consensus 287 ~~m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 350 (608)
...... + -.|+. .++..+...+...|+.++|.++++..++.. +..+..|..-...+-..|+++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 443321 0 01122 122333344445555555555555555442 222344444455555555555
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCC
Q 007329 351 EGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEG 394 (608)
Q Consensus 351 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 394 (608)
+|.+.++.... .|-..-+..+..+.+.|+.++|.+++......+
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 55555554443 233333334444555555555555555554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-07 Score=87.24 Aligned_cols=459 Identities=15% Similarity=0.110 Sum_probs=209.3
Q ss_pred HHHHhCCChHHHHHHHHHHhhcCCCCChhh-HHHHHHHhhccCCchhhhHHHHHHHH--------------------hcC
Q 007329 68 NELCLNGSLEQALKYLDSMQELNICVDEDA-LVNLVRLCEWKRGYDEGLYLHSVVSK--------------------TMS 126 (608)
Q Consensus 68 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------~~~ 126 (608)
.+-...|+++.|..+++.+. ..|+..+ |..+...-...|++--|.+.|..+-+ .|-
T Consensus 452 gaaid~~df~ra~afles~~---~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~gg 528 (1636)
T KOG3616|consen 452 GAAIDDGDFDRATAFLESLE---MGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGG 528 (1636)
T ss_pred ccccccCchHHHHHHHHhhc---cCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCC
Confidence 34567899999999998864 2366554 44444444445554444444432211 111
Q ss_pred -CcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHH
Q 007329 127 -HLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLR 205 (608)
Q Consensus 127 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 205 (608)
..+.+-..+++.. -..++.+|..+|-+- . .-..-|..|....++++++.+-+. .| .+.-...-.+-++
T Consensus 529 dgt~fykvra~lai--l~kkfk~ae~ifleq--n---~te~aigmy~~lhkwde~i~lae~---~~-~p~~eklk~sy~q 597 (1636)
T KOG3616|consen 529 DGTDFYKVRAMLAI--LEKKFKEAEMIFLEQ--N---ATEEAIGMYQELHKWDEAIALAEA---KG-HPALEKLKRSYLQ 597 (1636)
T ss_pred CCchHHHHHHHHHH--HHhhhhHHHHHHHhc--c---cHHHHHHHHHHHHhHHHHHHHHHh---cC-ChHHHHHHHHHHH
Confidence 1111111222222 223455565555321 1 112345556666667777665543 22 2222223334455
Q ss_pred HhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcc--CCCCCHhHHHHHHHHHHhcCChhHHH
Q 007329 206 TCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDG--MPKRDRISWNAMISGYFENGEYMKGL 283 (608)
Q Consensus 206 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (608)
++...|+-+.|-++-+ +..--.+.|..|.+.|....|.+.... ....|......+..++.+..-+++|-
T Consensus 598 ~l~dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkag 668 (1636)
T KOG3616|consen 598 ALMDTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAG 668 (1636)
T ss_pred HHHhcCchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhh
Confidence 6666666555544321 111123567788888888777765432 12235555666666666666677777
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccc-hHHHHHHHhcCChHHHHHHHhhCCCC
Q 007329 284 MLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVC-NPLIKMYLSFGNREEGEKVFSRMESK 362 (608)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 362 (608)
++|+++.. +...+.++.+..-+-+|.++-+.. ++..+... ..-...+...|+++.|..-|-+..
T Consensus 669 dlfeki~d---------~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-- 733 (1636)
T KOG3616|consen 669 DLFEKIHD---------FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-- 733 (1636)
T ss_pred hHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--
Confidence 77776643 112222232222233333332211 01111100 111222333344444443332211
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
..-..+.+-....+|.+|+.+++.++... .-..-|..+...|+..|+++.|+++|.+. ..++-.|.
T Consensus 734 ---~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~ 799 (1636)
T KOG3616|consen 734 ---CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAID 799 (1636)
T ss_pred ---hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHH
Confidence 00111233444555666666666555542 12233455555666666666666655431 12344455
Q ss_pred HhHhcCCHHHHHHHHccCCCCCc--ccHHHHHHHHHhCCCchHHHHHHHHhH----------------------hCCCCC
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNV--ISWTSIILGLRLNNRSFEALIFFRKMM----------------------LNLKPN 498 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~----------------------~~~~p~ 498 (608)
+|.+.|++++|.++-.+...|.. ..|-+-..-+-++|++.+|.++|-.+. ....|+
T Consensus 800 my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 56666666666666555554322 233333333444455444444433221 011111
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 007329 499 --SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ERDVSAWNILLTGYA 575 (608)
Q Consensus 499 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~~ 575 (608)
..|...+..-+...|++..|..-|-++- -|.+-+++|-..+-|++|..+-+.- ..|..-....+++-.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks 950 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS 950 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 2233444444555555555554443322 2334455555566666665555443 333333333333333
Q ss_pred hcCCHHHHHHHHHH
Q 007329 576 ERGQGALAEEFFRK 589 (608)
Q Consensus 576 ~~g~~~~A~~~~~~ 589 (608)
--| +.|..++++
T Consensus 951 igg--daavkllnk 962 (1636)
T KOG3616|consen 951 IGG--DAAVKLLNK 962 (1636)
T ss_pred hCc--HHHHHHHHh
Confidence 333 334555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-07 Score=94.56 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=93.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
+..+...|...|++++|++++++.+..-+-....|..-.+.+-+.|++++|.+.++.+++.+.. |..+-+-.+..+.|+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 3445666778888888888888888333334667778888888899999999999988888776 777777788888899
Q ss_pred CCHHHHHHHHHhc-CCC----------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 548 GRMKPAWNQFNSN-ERD----------VSAW--NILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 548 g~~~~A~~~~~~~-~~~----------~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
|++++|.+++... .++ ...| .....+|.+.|++..|+..|....+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999998888877 322 1234 3566778888988888877665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-07 Score=79.79 Aligned_cols=195 Identities=15% Similarity=0.031 Sum_probs=111.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhC
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLN 478 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 478 (608)
...|.-.|...|+...|..-+++.++.. +.+...+..+...|.+.|+.+.|.+.|++.. ..+-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344445555556655655555555554 3344455555555556666666666555443 22334555555566666
Q ss_pred CCchHHHHHHHHhH--hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 479 NRSFEALIFFRKMM--LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 479 ~~~~~A~~~~~~m~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
|++++|...|++.. -...--..||..+..+..+.|+.+.|...+++.++..+. .+.....+.....+.|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666665 112223445666666666666666666666666665554 334445566666666777777666
Q ss_pred HHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 557 FNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 557 ~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+++. .+...+.-..|..-.+.|+.+.|-++=.++.+. .|...
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~ 241 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSE 241 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcH
Confidence 6665 445555555556666667766666665555543 44443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.8e-08 Score=94.57 Aligned_cols=229 Identities=16% Similarity=0.241 Sum_probs=135.4
Q ss_pred chHHHHHHHhcCCCChhhHHHHHHHHHHh-----C-CCCchh-HHHHHHHHHHhcCCHHHHHHHHccCCC-------C--
Q 007329 198 YTFPCVLRTCGGVPDLKRGKEVHVHVIRF-----G-YEADVD-VVNALITMYVKCGDLVRARLVFDGMPK-------R-- 261 (608)
Q Consensus 198 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~-------~-- 261 (608)
.+...+...|...|+++.|..+++..++. | ..|.+. ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555667777777777777777766654 2 122222 233455667777777777777766542 1
Q ss_pred --CHhHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC-CChh-HHHHHHHHHhhcCChhhHHHHHHHHHHhC---C
Q 007329 262 --DRISWNAMISGYFENGEYMKGLMLFIMMREV-----LVD-PDFM-TLSSVISASELVGDEKLGREVHGYVIKMG---F 329 (608)
Q Consensus 262 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~ 329 (608)
-..+++.|...|.+.|++++|...+++..+- |.. |... -++.+...++..+++++|..+++...+.- .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2335666777778888877777766654321 111 2222 24555566777777888877777654331 1
Q ss_pred CCC----cccchHHHHHHHhcCChHHHHHHHhhCCC-------C----ChhhHHHHHHHHHcCCCchHHHHHHHHHHH--
Q 007329 330 SDD----VSVCNPLIKMYLSFGNREEGEKVFSRMES-------K----DVVSWTTMISCYEGSVLPDKAVETYQMMEA-- 392 (608)
Q Consensus 330 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-- 392 (608)
.++ ..+++.|...|...|++++|.+++++... . ....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 34566777777777777777777766543 0 123455566666777777767666655332
Q ss_pred --CCC-CCC-HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007329 393 --EGS-MPD-EITIASVLSACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 393 --~g~-~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 426 (608)
.|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 122 3456667777777777777777666554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.8e-06 Score=74.81 Aligned_cols=261 Identities=12% Similarity=0.021 Sum_probs=128.9
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhH-HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHH
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMT-LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLI 340 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 340 (608)
++.....+.+.+...|+.++|+..|++.... .|+..+ ...-.-.+.+.|+.+....+...+.... .-....|..-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 5666667777777777777777777665542 222221 0111112234555555555554444321 11222233333
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 007329 341 KMYLSFGNREEGEKVFSRMESKDV---VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDL 417 (608)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 417 (608)
......++++.|+.+-++....+. ..|-.-...+...|+.++|.-.|...+... +-+...|..|+..|...|.+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 334444555666555555444222 222222234555566666666665555431 1234556666666666666555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc-cCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFH-QIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLK 496 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 496 (608)
|...-....+.- +.+..+ +.+|. ...-+|+ .--++|..++++.+ .+.
T Consensus 387 A~~~An~~~~~~-~~sA~~-----------------LtL~g~~V~~~dp-------------~~rEKAKkf~ek~L-~~~ 434 (564)
T KOG1174|consen 387 ANALANWTIRLF-QNSARS-----------------LTLFGTLVLFPDP-------------RMREKAKKFAEKSL-KIN 434 (564)
T ss_pred HHHHHHHHHHHh-hcchhh-----------------hhhhcceeeccCc-------------hhHHHHHHHHHhhh-ccC
Confidence 554443333211 111111 11111 1111111 11345556665555 344
Q ss_pred CCH-HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 497 PNS-VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 497 p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|+. ...+.+...|...|..+++..+++.... ..||....+.|.+.+...+.+.+|++.|..+
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 442 3455556666667777777777766554 3456666677777777777777777766654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-06 Score=82.95 Aligned_cols=219 Identities=11% Similarity=-0.023 Sum_probs=143.5
Q ss_pred HHhCCChHHHHHH----HHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCC
Q 007329 70 LCLNGSLEQALKY----LDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGD 145 (608)
Q Consensus 70 ~~~~~~~~~A~~~----~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (608)
+.-+.+.+++.-. +.++....++.|...|..+.-++...|+++.+.+.|++....-+. ....|+.+-..|...|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhcc
Confidence 4445566665543 334444456678888988888999999999999999987765543 45678888889999999
Q ss_pred hhhHHHHHcccCC----CCcc-hHHHHHHHHH-hcCChhHHHHHHHHHHhcCC-C--CCCcchHHHHHHHhcC----CC-
Q 007329 146 LGHAWYVFGKMCD----RDLF-SWNVLIGGYA-KAGFFDEALSLYQRMFWVGG-V--KPDVYTFPCVLRTCGG----VP- 211 (608)
Q Consensus 146 ~~~A~~~~~~~~~----~~~~-~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~-~--~p~~~~~~~ll~~~~~----~~- 211 (608)
-..|..++++-.. |+.. .+-..-..|. +-+..++++++-.+.....+ . ......|..+.-+|.. ..
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 9999999997733 3222 2322223333 34677777777776665211 1 1222334334333321 11
Q ss_pred ------ChhhHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcCCHHHHHHHHccCC----CCCHhHHHHHHHHHHhcCChh
Q 007329 212 ------DLKRGKEVHVHVIRFGY-EADVDVVNALITMYVKCGDLVRARLVFDGMP----KRDRISWNAMISGYFENGEYM 280 (608)
Q Consensus 212 ------~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~ 280 (608)
...++.+.+++.++.+. .|++..| +.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 23456777777777653 3333333 3445677788888888776654 347888999999999999999
Q ss_pred HHHHHHHHHHH
Q 007329 281 KGLMLFIMMRE 291 (608)
Q Consensus 281 ~a~~~~~~m~~ 291 (608)
+|+.+.+....
T Consensus 531 ~Al~vvd~al~ 541 (799)
T KOG4162|consen 531 EALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-07 Score=87.91 Aligned_cols=185 Identities=14% Similarity=0.006 Sum_probs=82.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHHHhC
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIILGLRLN 478 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 478 (608)
|..+...+...|+.+.|...|+...+.. +.+...|+.+...+...|++++|.+.|++..+ | +...|..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3444444455555555555555555443 23344555555555555555555555555432 2 223444555555555
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH--HHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP--AWNQ 556 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~--A~~~ 556 (608)
|++++|++.|++... ..|+..........+...+++++|.+.+++..... .|+...+ .+ .+...|++++ +.+.
T Consensus 146 g~~~eA~~~~~~al~-~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~~~~~~ 220 (296)
T PRK11189 146 GRYELAQDDLLAFYQ-DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEETLMER 220 (296)
T ss_pred CCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHHHHHHH
Confidence 555555555555552 22222111111112233445566666554433221 1121111 11 1222333322 2222
Q ss_pred HHhc--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 557 FNSN--------ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 557 ~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+.+. +.....|..+...+...|++++|...|++..+
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2211 11223556666666666666666666666655
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-05 Score=79.74 Aligned_cols=338 Identities=11% Similarity=0.028 Sum_probs=193.4
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHH
Q 007329 204 LRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGL 283 (608)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 283 (608)
|..|....+|+++..+-+ ..|.+.-...-.+.+.++...|+-++|-++-+. +-.+ -+.|+.|.+.|.+.+|.
T Consensus 564 igmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s----dgd~-laaiqlyika~~p~~a~ 635 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELKES----DGDG-LAAIQLYIKAGKPAKAA 635 (1636)
T ss_pred HHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhccc----cCcc-HHHHHHHHHcCCchHHH
Confidence 344444455565555433 223333334445556666667777776654322 1111 23467777888777776
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC
Q 007329 284 MLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD 363 (608)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 363 (608)
.....=. .+..|......+..++.+..-+++|-.+|+.+.. +...+.+|-+-+-+.+|.++-+-.-...
T Consensus 636 ~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfafp~e 704 (1636)
T KOG3616|consen 636 RAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAFPEE 704 (1636)
T ss_pred HhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhCcHH
Confidence 5442211 1233455555555555555555555555554421 1122223333333444444332222112
Q ss_pred hhhH-HHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 364 VVSW-TTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 364 ~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
+++. ......+.+.|+++.|+..|-+... ..-.+.+......+.+|+.+++.+.+.+.. ...|..+.+
T Consensus 705 vv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iad 773 (1636)
T KOG3616|consen 705 VVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIAD 773 (1636)
T ss_pred HhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHH
Confidence 2221 1122345566777777776654432 223455666778999999999988876532 345677888
Q ss_pred HhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIH 522 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 522 (608)
-|...|+++.|.++|-+.- .++-.|..|.+.|+++.|.++-.+.. +-......|..-..-+-..|++.+|.+++
T Consensus 774 hyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~-~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 774 HYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH-GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc-CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 9999999999999997654 46677889999999999999988876 44445556666666677788888887765
Q ss_pred HHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 007329 523 AHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDV--SAWNILLTGYAERGQGALAEEF 586 (608)
Q Consensus 523 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~ 586 (608)
-.+- .|+ .-|.+|-+.|..++.+.+.++-.+|. .|...+..-|...|+...|.+-
T Consensus 848 iti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 848 ITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred EEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 4221 122 24566666677766666666653332 2344444444444554444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-07 Score=78.01 Aligned_cols=199 Identities=10% Similarity=-0.069 Sum_probs=162.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSK 446 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (608)
...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|+.+.|.+-|+...... +-+..+.|-....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4456668999999999999999998874 2245688888889999999999999999988776 5566777888888999
Q ss_pred cCCHHHHHHHHccCC-CCC----cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 447 CKCIDKALEVFHQIP-DKN----VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 447 ~g~~~~A~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
.|++++|...|++.. .|+ ..+|..+..+..+.|+.+.|.+.|++.++-.+....+...+.....+.|++-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 999999999999876 443 368999999999999999999999999966666677888899999999999999999
Q ss_pred HHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHH
Q 007329 522 HAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWN 568 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~ 568 (608)
++.....+. ++....-..|..-.+.|+.+.|.+.=... -|...-|.
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 999887776 68888777888888899998887755444 44444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8e-07 Score=78.10 Aligned_cols=282 Identities=13% Similarity=0.106 Sum_probs=149.1
Q ss_pred hHHHHHhhhcCChhhHHHHHcccCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHH-HHHHhcC
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMCDR---DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPC-VLRTCGG 209 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-ll~~~~~ 209 (608)
++.+..+.+..++++|++++..-.++ +....+.|..+|....++..|-+.++++-. ..|...-|.. -...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHH
Confidence 44444455556666666665544332 334455556666666666666666666543 2344444332 1233445
Q ss_pred CCChhhHHHHHHHHHHhCCCCchhHHHHHHH--HHHhcCCHHHHHHHHccCCC-CCHhHHHHHHHHHHhcCChhHHHHHH
Q 007329 210 VPDLKRGKEVHVHVIRFGYEADVDVVNALIT--MYVKCGDLVRARLVFDGMPK-RDRISWNAMISGYFENGEYMKGLMLF 286 (608)
Q Consensus 210 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~ 286 (608)
.+.+..|..+...|.+. ++...-..-+. ..-..+++..+..++++... .+..+.+...-...+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 55566666666555432 11111111111 12345777777777777763 45555555555666777788887777
Q ss_pred HHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcc----------------------------cchH
Q 007329 287 IMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVS----------------------------VCNP 338 (608)
Q Consensus 287 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------~~~~ 338 (608)
+...+-+--.....|+..+.. .+.|+.+.|.+...++++.|+...+. .+|.
T Consensus 168 qaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 777665433345556655533 35677777777777777776532211 1122
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007329 339 LIKMYLSFGNREEGEKVFSRMES-----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG 413 (608)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 413 (608)
-...+.+.|+.+.|.+.+-.|.. -|++|...+.-. -..+++.+..+-+.-+.+.+. -...||..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhH
Confidence 22233455666666666666654 244554433211 123334444444444444432 23456666666666666
Q ss_pred ChHHHHHHHHH
Q 007329 414 NLDLGIKLHQL 424 (608)
Q Consensus 414 ~~~~a~~~~~~ 424 (608)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 66666665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-07 Score=84.50 Aligned_cols=122 Identities=11% Similarity=-0.044 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcC
Q 007329 301 LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--K-DVVSWTTMISCYEGS 377 (608)
Q Consensus 301 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~ 377 (608)
|......+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|...|++..+ | +...|..+..++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3333444455555555555555555443 33345555555555555555555555555533 2 234444455555555
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLA 425 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 425 (608)
|++++|++.|++..+.. |+..........+...++.++|...++..
T Consensus 146 g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 146 GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66666666665555542 22221111111223344555555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.4e-06 Score=83.84 Aligned_cols=506 Identities=12% Similarity=-0.021 Sum_probs=228.2
Q ss_pred hHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcc
Q 007329 76 LEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGK 155 (608)
Q Consensus 76 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 155 (608)
...|+..|-+..+..+ -=...|..+-..|....+...|.+.|....+.+.. +...+....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 5555555555444221 12345666666666666777777777776665542 455566666677777777766666322
Q ss_pred cCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCC
Q 007329 156 MCDRDL-----FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEA 230 (608)
Q Consensus 156 ~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 230 (608)
..+.+. ..|....-.|.+.++..+|+.-|+...+.. +-|...|..+..+|...|.+..|.++|.+.......
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~- 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL- 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-
Confidence 221111 112222223444555555555555554432 334445555555555555555555555544433211
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCCC----------CHhHHHHHHHHHHhcCChhHHHHHHHHHH-------HCC
Q 007329 231 DVDVVNALITMYVKCGDLVRARLVFDGMPKR----------DRISWNAMISGYFENGEYMKGLMLFIMMR-------EVL 293 (608)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~ 293 (608)
+...---..-..+..|.+.+|...+..+... -..++-.+...+.-.|-..+|.+++++-. .+.
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 1111111111233445555555444443311 11122222222222222222222222111 111
Q ss_pred --------------------CCCC---hhHHHHHHHHHhhcCCh---h---hHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 007329 294 --------------------VDPD---FMTLSSVISASELVGDE---K---LGREVHGYVIKMGFSDDVSVCNPLIKMYL 344 (608)
Q Consensus 294 --------------------~~p~---~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (608)
+.|+ .....++..-....+.. | .+.+.+-. ......+...|..|+..|.
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHH
Confidence 1122 11111111111111111 1 00111100 0011222344444444443
Q ss_pred h----c----CChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007329 345 S----F----GNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG 413 (608)
Q Consensus 345 ~----~----~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 413 (608)
+ . .+...|...+....+ .+..+||.|--. ...|.+.-+.-.|-+-.... +....+|..+.-.+....
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~ 864 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ 864 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence 3 1 122345555555443 566667766444 44455555555554443332 224556666666667777
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC-----C---CCcccHHHHHHHHHhCCCchHHH
Q 007329 414 NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP-----D---KNVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
+++.|...|...+... +.+...|-.........|+.-++..+|..-. + ++..-|-....-...+|+.++-+
T Consensus 865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I 943 (1238)
T KOG1127|consen 865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI 943 (1238)
T ss_pred cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence 8888888877766544 3334444333333445566666666665411 1 33334444444445555555544
Q ss_pred HHHHHh----------HhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCCccHHH----HHHHHhHhcCCH
Q 007329 486 IFFRKM----------MLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI-GVAFDGFLPN----ALLDMYVRCGRM 550 (608)
Q Consensus 486 ~~~~~m----------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~ 550 (608)
...+.+ ..+.+.+...|.......-+.+.+..|.+...+.+.. ..+.|...|+ .+.+.++..|.+
T Consensus 944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgef 1023 (1238)
T KOG1127|consen 944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEF 1023 (1238)
T ss_pred HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcch
Confidence 333332 2445556677777777777777777777666654411 1112333333 234445556666
Q ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 551 KPAWNQFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 551 ~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+.|..-+... .-|..+-..-+.. .-.|+++++.+.|++...
T Consensus 1024 e~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLs 1066 (1238)
T KOG1127|consen 1024 ESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALS 1066 (1238)
T ss_pred hhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhh
Confidence 6655544433 1122211111111 234556666666666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-05 Score=78.25 Aligned_cols=112 Identities=19% Similarity=0.152 Sum_probs=69.8
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCC-----------------------CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCD-----------------------RDLFSWNVLIGGYAKAGFFDEALSLYQRMF 188 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 188 (608)
+|......+-..++.+.|++.|++... .|...|......+-..|+.+.|+.+|...+
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 344444555556777777777776521 233344444444455677777777766554
Q ss_pred hcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 189 WVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 189 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
-|..+++..|-.|+.++|-++-++ .-|....-.|.+.|-..|++.+|..+|.+..
T Consensus 940 ----------D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 940 ----------DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----------hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 244566667777777777776554 2355555667778888888888888776553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.3e-08 Score=89.00 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 007329 515 LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQG-ALAEEFFRK 589 (608)
Q Consensus 515 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 589 (608)
+++|..+|+++.+. +.+++.+.+.+..+....|++++|.+++++. +.|+.+...++......|+. +.+.+++.+
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 44444444443322 2233444444444444444444444444443 22334444444444444444 334444444
Q ss_pred HHH
Q 007329 590 MID 592 (608)
Q Consensus 590 m~~ 592 (608)
+..
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-05 Score=78.10 Aligned_cols=55 Identities=13% Similarity=-0.076 Sum_probs=32.5
Q ss_pred HHHHHhHhcCCHHHHHHHHHhc----CC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 539 ALLDMYVRCGRMKPAWNQFNSN----ER---D------VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~----~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
....++...|+.++|...++.+ .. . ....-....++...|++++|.+.+.+....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455566677777777777665 11 1 111122233456778888888888777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-05 Score=71.32 Aligned_cols=319 Identities=11% Similarity=-0.015 Sum_probs=169.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
+.+.+..+.+..++++|++++..-.++.. .+....+.+..+|....++..|-..++++-...++....-+- -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY-~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY-QAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HHHHHHH
Confidence 55667777777788888887777665442 144555555566677777777777777766655432221111 1233445
Q ss_pred cCChhhHHHHHcccCC-CCcchHHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHH
Q 007329 143 FGDLGHAWYVFGKMCD-RDLFSWNVLIG--GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~-~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 219 (608)
.+.+.+|+++...|.. ++...-..-+. .....+++..+..++++....+ +..+.+...-...+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHHHH
Confidence 6666777777666644 22211111111 1223455556665555543211 222222222333456666666666
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----------------C---------------HhHHH
Q 007329 220 HVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-----------------D---------------RISWN 267 (608)
Q Consensus 220 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------------~---------------~~~~~ 267 (608)
|+...+.|--.....||..+..| +.|+.+.|++...++.++ | +..+|
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 66666554333444555444333 445666666655544321 1 11344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC-CCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhc
Q 007329 268 AMISGYFENGEYMKGLMLFIMMREV-LVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSF 346 (608)
Q Consensus 268 ~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (608)
.-...+.+.|+++.|.+-+..|.-+ ....|+.|...+.-.- ..+++-...+-+..+.+.. +....||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhh
Confidence 4445566778888888877777433 2345666655443221 2234444444455555543 34556777888888888
Q ss_pred CChHHHHHHHhhCCCC-----ChhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 347 GNREEGEKVFSRMESK-----DVVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 347 ~~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
.-++-|-.++.+-... +...|+.+=..-...-..++|.+-++.+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888877665542 3333443322222333455555544433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-07 Score=86.35 Aligned_cols=246 Identities=10% Similarity=0.072 Sum_probs=162.4
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHH
Q 007329 307 ASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVET 386 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 386 (608)
-+.-.|++..+..-.+ .....-..+......+.+++...|+.+.++.-+..-..|.......+...+...++-+.++.-
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHH
Confidence 3445677777775554 211111112334556778899999988776666555556666665555544443555666666
Q ss_pred HHHHHHCCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc
Q 007329 387 YQMMEAEGSMPDEITIA-SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV 465 (608)
Q Consensus 387 ~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 465 (608)
+++....+..++..++. .....+...|+++.|++++... .+.......+.+|.+.++++.|.+.++.|.+-+.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 65554444333333333 3335567789999999887642 4567777889999999999999999999986432
Q ss_pred -ccHHHHHHHH----HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHH
Q 007329 466 -ISWTSIILGL----RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNAL 540 (608)
Q Consensus 466 -~~~~~l~~~~----~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 540 (608)
.+...+..++ .-.+.+.+|..+|+++.....++..+.+.+..++...|++++|.+++.++.+.+.. ++.+...+
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNl 241 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANL 241 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHH
Confidence 2333343333 33446999999999998777889999999999999999999999999998876655 56676777
Q ss_pred HHHhHhcCCH-HHHHHHHHhc
Q 007329 541 LDMYVRCGRM-KPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~-~~A~~~~~~~ 560 (608)
+.+....|+. +.+.+.+..+
T Consensus 242 iv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 242 IVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHhCCChhHHHHHHHHH
Confidence 8888888887 6677788777
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-05 Score=74.59 Aligned_cols=217 Identities=12% Similarity=0.031 Sum_probs=112.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH-------H
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIAN-------T 439 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 439 (608)
...+.++..+..+++.|++.+....+.. -+..-++....+|...|.+...........+.|.. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3445556666777788888887777654 34444555666777777777766666655554422 111122 2
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHH-HHHHHHHHHhccCcHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSV-TLVSILSACARIGALMCG 518 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~-~~~~ll~~~~~~~~~~~a 518 (608)
+..+|.+.++.+.++..|++...+... -....+....++++...+... -+.|... -...-...+.+.|++..|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a-~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKA-YINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHH-hhChhHHHHHHHHHHHHHhccCHHHH
Confidence 334666677788888877765421110 001111222223332222222 1222211 111124445556666666
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 519 KEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
...+.++++..+. |...|....-+|.+.|.+..|+.-.+.. .| ....|.-=..++....+++.|.+.|++.++.
T Consensus 378 v~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6666666665544 5566666666666666666666655554 22 2333444444455555566666666665553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-05 Score=88.73 Aligned_cols=352 Identities=10% Similarity=-0.071 Sum_probs=211.2
Q ss_pred HHhcCCHHHHHHHHccCCCCCHh--HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHH
Q 007329 242 YVKCGDLVRARLVFDGMPKRDRI--SWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGRE 319 (608)
Q Consensus 242 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 319 (608)
+...|++.+|..........+.. ............|+++.+..++..+.......+..........+...|+++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 34445555555544444333211 1111223344567777766666655221111122222333344557789999998
Q ss_pred HHHHHHHhCCC------CC--cccchHHHHHHHhcCChHHHHHHHhhCCC----CCh----hhHHHHHHHHHcCCCchHH
Q 007329 320 VHGYVIKMGFS------DD--VSVCNPLIKMYLSFGNREEGEKVFSRMES----KDV----VSWTTMISCYEGSVLPDKA 383 (608)
Q Consensus 320 ~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~~~~~~~a 383 (608)
++....+.--. +. ......+...+...|++++|...+++... .+. ...+.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88877543111 11 11122234455678999999988877543 221 2345556677889999999
Q ss_pred HHHHHHHHHCCC---CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHh----CCCC---chhHHHHHHHHhHhcCCHH
Q 007329 384 VETYQMMEAEGS---MP--DEITIASVLSACACLGNLDLGIKLHQLAMRT----GLIS---YIIIANTLIDMYSKCKCID 451 (608)
Q Consensus 384 ~~~~~~m~~~g~---~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~ 451 (608)
...+++.....- .+ ...++..+...+...|+++.|...+++..+. +... ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999988764311 11 1234555666778899999999988876642 2111 1233445566677789999
Q ss_pred HHHHHHccCCC------C--CcccHHHHHHHHHhCCCchHHHHHHHHhH---hCCCCCHH--H-H-HHHHHHHhccCcHH
Q 007329 452 KALEVFHQIPD------K--NVISWTSIILGLRLNNRSFEALIFFRKMM---LNLKPNSV--T-L-VSILSACARIGALM 516 (608)
Q Consensus 452 ~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~~~--~-~-~~ll~~~~~~~~~~ 516 (608)
+|...+++... + ....+..+...+...|++++|.+.+++.. ........ . . ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 99988887642 1 12234445667788999999999998886 11111111 1 0 11123344578899
Q ss_pred HHHHHHHHHHHhCCCCCc---cHHHHHHHHhHhcCCHHHHHHHHHhc-C-----CC----HHHHHHHHHHHHhcCCHHHH
Q 007329 517 CGKEIHAHALRIGVAFDG---FLPNALLDMYVRCGRMKPAWNQFNSN-E-----RD----VSAWNILLTGYAERGQGALA 583 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~----~~~~~~l~~~~~~~g~~~~A 583 (608)
.|.+.+............ ..+..+..++...|++++|...++++ . .. ..+...+..++...|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 988887765432211111 11345677888999999999999887 1 11 23566677788999999999
Q ss_pred HHHHHHHHHc
Q 007329 584 EEFFRKMIDS 593 (608)
Q Consensus 584 ~~~~~~m~~~ 593 (608)
.+.+++..+.
T Consensus 751 ~~~L~~Al~l 760 (903)
T PRK04841 751 QRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-05 Score=78.99 Aligned_cols=469 Identities=13% Similarity=0.004 Sum_probs=266.6
Q ss_pred chhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 111 YDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRM 187 (608)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 187 (608)
...|...|-..++..+.. ...|..|...|....+...|.+.|++..+ .+..++....+.|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555554444444322 34578889999988899999999998855 45678889999999999999999985544
Q ss_pred HhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhH-H
Q 007329 188 FWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRIS-W 266 (608)
Q Consensus 188 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~ 266 (608)
-+......-...|..+.-.+...++..++..-|+...+.. +.|...|..+..+|..+|++..|.++|.+...-++.. |
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 3332111112223334445778899999999999988875 5688899999999999999999999998876543332 2
Q ss_pred H--HHHHHHHhcCChhHHHHHHHHHHHC------CCCCChhHHHHHHHHHhhcCCh-------hhHHHHHHHHHHhCCCC
Q 007329 267 N--AMISGYFENGEYMKGLMLFIMMREV------LVDPDFMTLSSVISASELVGDE-------KLGREVHGYVIKMGFSD 331 (608)
Q Consensus 267 ~--~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~ 331 (608)
. -....-+..|.+.+|++.+...... +..--..++..+...+...|-. +++.+.+..........
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 2 2233456688899988888776542 1111122333333333333322 22333332222222111
Q ss_pred CcccchHH-------------------HHHHHh----cCCh---H---HHHHHHhhCCC--CChhhHHHHHHHHHc----
Q 007329 332 DVSVCNPL-------------------IKMYLS----FGNR---E---EGEKVFSRMES--KDVVSWTTMISCYEG---- 376 (608)
Q Consensus 332 ~~~~~~~l-------------------~~~~~~----~~~~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~---- 376 (608)
+...|-.+ +..+.+ .+.. + -+.+.+-.-.+ .+..+|..+...|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 22222111 111111 1111 0 00000000000 123344444443332
Q ss_pred C----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH
Q 007329 377 S----VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK 452 (608)
Q Consensus 377 ~----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 452 (608)
. .+...|+..+.+..+.. .-+..+|+.| ......|++.-+..-|-.-.... +....+|.-+...+.+..+++-
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaL-GVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHH-HHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHH
Confidence 1 12235666666665542 1234444444 34455566666655554433333 3445566666777788888888
Q ss_pred HHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHh--H---hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007329 453 ALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKM--M---LNLKPNSVTLVSILSACARIGALMCGKEIHAH 524 (608)
Q Consensus 453 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m--~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (608)
|...|.....- |...|--........|+.-++..+|..- . +|-.++..-+.....-....|+.++-....+.
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 88888887743 4456666666666778888888887762 2 45555555555555555566665543333222
Q ss_pred H----------HHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc------CCCHHHHH----HHHHHHHhcCCHHHHH
Q 007329 525 A----------LRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN------ERDVSAWN----ILLTGYAERGQGALAE 584 (608)
Q Consensus 525 ~----------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~----~l~~~~~~~g~~~~A~ 584 (608)
+ .. +..-+...|...+....+.+.++.|.+...+. +-|...|+ .+.+.+...|.++.|.
T Consensus 949 i~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~ 1027 (1238)
T KOG1127|consen 949 ISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAK 1027 (1238)
T ss_pred hhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHh
Confidence 2 22 22224566667777777777777777776665 34555555 3344455666666554
Q ss_pred H
Q 007329 585 E 585 (608)
Q Consensus 585 ~ 585 (608)
.
T Consensus 1028 ~ 1028 (1238)
T KOG1127|consen 1028 K 1028 (1238)
T ss_pred h
Confidence 3
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.5e-06 Score=77.99 Aligned_cols=217 Identities=12% Similarity=0.014 Sum_probs=126.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHH-------HH
Q 007329 301 LSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDV---VSWT-------TM 370 (608)
Q Consensus 301 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-------~l 370 (608)
...+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+.++........+... .-|+ .+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445556666667777777777766654 4555566677777777777666655554333111 1122 23
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
..+|.+.++++.++..|++.......||..+ +....+++....+...-.+... ..-...-...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 3356666778888888887666544444322 1122222222222211111111 11111224556677888
Q ss_pred HHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 451 DKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 451 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
..|.+.+.++.. .|...|.....+|.+.|.+..|+.-.+..++..++....|..-..++....+++.|++.|++.++
T Consensus 375 ~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877663 24567777888888888888887777766644444455565556666666777788888777776
Q ss_pred hC
Q 007329 528 IG 529 (608)
Q Consensus 528 ~~ 529 (608)
.+
T Consensus 455 ~d 456 (539)
T KOG0548|consen 455 LD 456 (539)
T ss_pred cC
Confidence 65
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-05 Score=76.67 Aligned_cols=194 Identities=14% Similarity=0.024 Sum_probs=114.9
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCC-CCChhhHHH-HHHHhhccCCchhhhHHHHHHHHhcCCcchhHHh---HHH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNI-CVDEDALVN-LVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGN---AFL 137 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~-~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~ 137 (608)
+..+...+...|+.+++...+....+... .++...... ....+...|++++|..+++...+..+.. ...+. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD-LLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHhHHHH
Confidence 44455556667778887776666544322 122211111 1224566788899998888888776543 22322 111
Q ss_pred HHhhhcCChhhHHHHHcccCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChh
Q 007329 138 SMFVKFGDLGHAWYVFGKMCDRDL---FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLK 214 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~ 214 (608)
......|..+.+.+.++.....+. .....+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHH
Confidence 122234555666666654322222 233344556777888888888888887654 444556667777777888888
Q ss_pred hHHHHHHHHHHhCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 215 RGKEVHVHVIRFGY-EADV--DVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 215 ~a~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
+|...++...+... .++. ..|..+...+...|++++|..++++..
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88888877766432 1222 234456667777777777777777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-08 Score=57.88 Aligned_cols=33 Identities=42% Similarity=0.535 Sum_probs=24.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 227 GYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 227 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
|+.||..+|++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-05 Score=86.05 Aligned_cols=257 Identities=11% Similarity=-0.020 Sum_probs=114.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhhcCChhhHHHHHHHHHHhCCC---C--CcccchHHHHH
Q 007329 272 GYFENGEYMKGLMLFIMMREVLVDPDF----MTLSSVISASELVGDEKLGREVHGYVIKMGFS---D--DVSVCNPLIKM 342 (608)
Q Consensus 272 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~ 342 (608)
.+...|++++|...+++....-...+. ...+.+...+...|+++.|...+++.....-. + ....+..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566666666666655442111111 12223333444566666666666555432110 0 01123334445
Q ss_pred HHhcCChHHHHHHHhhCCC-------CC----hhhHHHHHHHHHcCCCchHHHHHHHHHHHCC--CCCC--HHHHHHHHH
Q 007329 343 YLSFGNREEGEKVFSRMES-------KD----VVSWTTMISCYEGSVLPDKAVETYQMMEAEG--SMPD--EITIASVLS 407 (608)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~t~~~ll~ 407 (608)
+...|++++|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 5556666666665544322 00 1122233334455566666666665544321 1111 222333344
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCc-hhHH-----HHHHHHhHhcCCHHHHHHHHccCCCCCcc-------cHHHHHHH
Q 007329 408 ACACLGNLDLGIKLHQLAMRTGLISY-IIIA-----NTLIDMYSKCKCIDKALEVFHQIPDKNVI-------SWTSIILG 474 (608)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~ 474 (608)
.....|+.+.|.+.++.......... ...+ ...+..+...|+.+.|.+.+.....+... .+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 45556666666666655543210000 0000 01112333456666666665544432110 02234445
Q ss_pred HHhCCCchHHHHHHHHhH---h--CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 475 LRLNNRSFEALIFFRKMM---L--NLKPN-SVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~---~--~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
+...|++++|...+++.. . +...+ ..+...+..++...|+.++|...+.++.+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556666666666666655 1 11111 123444455555666666666666666544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.6e-06 Score=80.77 Aligned_cols=217 Identities=14% Similarity=0.099 Sum_probs=178.1
Q ss_pred CCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007329 329 FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSA 408 (608)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 408 (608)
++|-...-..+...+...|-...|..+|+++. .|...|.+|+..|+..+|..+..+-.++ +||+.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 34445555678888999999999999998865 6777889999999999999999888874 7899999999988
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHH
Q 007329 409 CACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- -..+|-.+..+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88888889999888765432 1112222233478999999999976543 3468888888899999999999
Q ss_pred HHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 486 IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.|.....+-+-+...|+.+-.+|.+.++-.+|...+.++.+.+.+ +..+|...+-...+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999666667789999999999999999999999999999854 6777888888889999999999999887
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0012 Score=67.70 Aligned_cols=155 Identities=16% Similarity=0.128 Sum_probs=83.5
Q ss_pred HHHHHHHHHccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc--ccHHH-HHHHH
Q 007329 402 IASVLSACACLGNLD---LGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV--ISWTS-IILGL 475 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~-l~~~~ 475 (608)
.+.|+..+-+.++.. +|+-+++...... +.+..+--.+|..|.-.|-+..|.++|+.+.-+++ .|... +...+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence 445666777776654 3444444444333 44555556778888888888888888887764332 12222 23344
Q ss_pred HhCCCchHHHHHHHHhH---hCCCCCHHHHHHHHHHHhccCcHHHHHHH---HHHHHHhCCCCCccHHHHHHHHhHhcCC
Q 007329 476 RLNNRSFEALIFFRKMM---LNLKPNSVTLVSILSACARIGALMCGKEI---HAHALRIGVAFDGFLPNALLDMYVRCGR 549 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (608)
...|++..+...+.... ....-+..-|..+ || +.|.+....+. -+++......--..+-+..++..+..++
T Consensus 518 ~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~--AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKFYDSSLKETPEYIAL--AY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HhcccchhHHHHHHHHHHHHhhhhhhhHHHHHH--HH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 55667777777766655 1111222222222 22 33444443333 2233222111123344556777778888
Q ss_pred HHHHHHHHHhc
Q 007329 550 MKPAWNQFNSN 560 (608)
Q Consensus 550 ~~~A~~~~~~~ 560 (608)
.++-...++.+
T Consensus 595 ~~q~~~~~~~~ 605 (932)
T KOG2053|consen 595 GTQLLKLLESM 605 (932)
T ss_pred HHHHHHHHhcc
Confidence 88877777776
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.8e-05 Score=68.66 Aligned_cols=312 Identities=13% Similarity=0.059 Sum_probs=162.8
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHH---HHHhhcCChhhHHHHHHHHHHhCCCCCcccc-h
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI---SASELVGDEKLGREVHGYVIKMGFSDDVSVC-N 337 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 337 (608)
++.-.-.+...+...|++.+|+.-|....+. |+..|.++. ..|...|+...|..-+..+++. .||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3444445666677777777777777766553 333343333 3455566666666666666554 3442211 1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 007329 338 PLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDL 417 (608)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 417 (608)
.-...+.+.|.++.|..-|+.+.+.+..- |...+|..-+..+. ........+..+...|+...
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-----------~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-----------GLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhh
Confidence 12234556666666666666655421100 00000000000000 00111122333444555666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccC---CCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQI---PDKNVISWTSIILGLRLNNRSFEALIFFRKMMLN 494 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 494 (608)
|+.....+++-. +.+...|..-..+|...|++..|+.-+... ...+.....-+-..+...|+.+.++...++.+ .
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL-K 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL-K 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH-c
Confidence 666555555543 445555555556666666666665444332 23344444444555555666666666655555 4
Q ss_pred CCCCHHH----HHHH---------HHHHhccCcHHHHHHHHHHHHHhCCCCCccH---HHHHHHHhHhcCCHHHHHHHHH
Q 007329 495 LKPNSVT----LVSI---------LSACARIGALMCGKEIHAHALRIGVAFDGFL---PNALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 495 ~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~ 558 (608)
+.||... |..| +......+++.++++-.+...+..+...... +..+-.+|...|++.+|++...
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 4454332 1111 1223345666677777776666655533333 3344556667778888888877
Q ss_pred hc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 559 SN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 559 ~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++ .| |..++---..+|.-..+++.|+.-|++..+. ++++.
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~--n~sn~ 375 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL--NESNT 375 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcccH
Confidence 76 33 3666666677777777888888888887764 44443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.6e-06 Score=72.53 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh-HhcCC--HHHHH
Q 007329 478 NNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY-VRCGR--MKPAW 554 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~ 554 (608)
.++.++++..++..+..-+.|...|..+...+...|++++|...++++.+..+. +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 344455555555555444555666666666666666666666666666665544 555555555543 45555 36666
Q ss_pred HHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 555 NQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 555 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+++++. +.+...+..+...+...|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666665 334556666666666666666666666666554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-06 Score=76.84 Aligned_cols=178 Identities=14% Similarity=0.025 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-C-chhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-cc---cHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLI-S-YIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-VI---SWT 469 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 469 (608)
....+..+...+...|+++.|...++.+.+.... + ....+..+..++.+.|++++|...++++.+ |+ .. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556667777788888888888888887765421 1 123556677778888888888888887753 21 11 344
Q ss_pred HHHHHHHhC--------CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 007329 470 SIILGLRLN--------NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALL 541 (608)
Q Consensus 470 ~l~~~~~~~--------~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 541 (608)
.+..++.+. |++++|.+.|+++....+-+......+..... .. .... .....+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~------~~~~--------~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LR------NRLA--------GKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HH------HHHH--------HHHHHHH
Confidence 444455443 56777777777777333323222222211100 00 0000 0112466
Q ss_pred HHhHhcCCHHHHHHHHHhc---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 542 DMYVRCGRMKPAWNQFNSN---ERD----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..|.+.|++++|...+++. .|+ ...|..++.++...|++++|..+++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7899999999999999988 332 468899999999999999999999998764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00032 Score=63.53 Aligned_cols=323 Identities=13% Similarity=0.075 Sum_probs=155.6
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHH---HHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIG---GYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRT 206 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 206 (608)
+.-.-.+.+.+...|++.+|+.-|....+-|+..|.++.+ .|...|+...|+.=+.+..+ ++||-..-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARi---- 110 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARI---- 110 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHH----
Confidence 3333455566666677777777777776666666655543 45566666666666666654 3455322111
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLF 286 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 286 (608)
.-...+.+.|.+++|..-|+.+.+.++.- +....++.+.-..++-+.
T Consensus 111 ------------------------------QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~-- 157 (504)
T KOG0624|consen 111 ------------------------------QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV-- 157 (504)
T ss_pred ------------------------------HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH--
Confidence 01122344455555544444443321100 000000000000011111
Q ss_pred HHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CC
Q 007329 287 IMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KD 363 (608)
Q Consensus 287 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 363 (608)
....+..+...|+...|+.....+++.. +.|...+..-..+|...|++..|+.-++...+ .+
T Consensus 158 --------------l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 158 --------------LVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred --------------HHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 1112222334445555555555554443 44555555556666666666666554444332 34
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...+--+-..+-..|+.+.++....+-.+. .||....-..- ..+.+....++.|.+
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~Y------KklkKv~K~les~e~---------------- 278 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFY------KKLKKVVKSLESAEQ---------------- 278 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHH------HHHHHHHHHHHHHHH----------------
Confidence 444444444555566666666665555543 45543221111 111111222222111
Q ss_pred hHhcCCHHHHHHHHccCCC--CC--c---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 444 YSKCKCIDKALEVFHQIPD--KN--V---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~--~~--~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
....+++.++.+..+...+ |. . ..+..+-.++...+++.+|++.-.+.+.-.+.|..++.--..+|.-...++
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 1223344444444443332 21 1 123334456666777888887777777333334677777777887777888
Q ss_pred HHHHHHHHHHHhCCC
Q 007329 517 CGKEIHAHALRIGVA 531 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~ 531 (608)
.|+.-|+.+.+.+..
T Consensus 359 ~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 359 DAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHhcCcc
Confidence 888888877776544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-07 Score=55.36 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=17.9
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 007329 429 GLISYIIIANTLIDMYSKCKCIDKALEVFHQI 460 (608)
Q Consensus 429 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 460 (608)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-05 Score=85.76 Aligned_cols=204 Identities=12% Similarity=0.124 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh-CCCC---chhHHHHHHHHhHhcCCHHHHHHHHccCCCC-C-cccHHHHH
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRT-GLIS---YIIIANTLIDMYSKCKCIDKALEVFHQIPDK-N-VISWTSII 472 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l~ 472 (608)
...|...|......++.+.|+++.+++... ++.- -..+|.++++.-.--|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 456777777788888999999988877742 2222 2345667777766777788888888887752 2 35678888
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhcCCHH
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 551 (608)
..|.+.+.+++|.++++.|...+......|...+..+.+..+-+.|..++.++.+.-++- ......-.+..-.+.|+.+
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 889999999999999999996666777788888899999999899999999888765442 2334445566667889999
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchhh
Q 007329 552 PAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKLMG 602 (608)
Q Consensus 552 ~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 602 (608)
.++.+|+.. +.-...|+.++..-.++|+.+.++.+|++.+..++.|.....
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 999999887 556778999999999999999999999999988887766533
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-06 Score=70.44 Aligned_cols=92 Identities=10% Similarity=-0.042 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
+..+...+.+.|++++|...|+....--+.+...+..+..++...|++++|...++++.+.++. ++..+..++.++.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence 3444555556666666666666665333445556666666666666666666666666665443 555566666666666
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++++|.+.|++.
T Consensus 106 g~~~eAi~~~~~A 118 (144)
T PRK15359 106 GEPGLAREAFQTA 118 (144)
T ss_pred CCHHHHHHHHHHH
Confidence 6666666666665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-06 Score=81.36 Aligned_cols=220 Identities=12% Similarity=0.072 Sum_probs=106.8
Q ss_pred HHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHH
Q 007329 342 MYLSFGNREEGEKVFSRMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMP-DEITIASVLSACACLGNLDL 417 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~ 417 (608)
-+.+.|++.+|.-.|+...+. +...|.-|.......++-..|+..+.+..+.. | +......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHH
Confidence 345666677777666665542 34456666666666666666766666666642 3 34455556666666666666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH--hCC
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM--LNL 495 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~ 495 (608)
|...++..++..++- .. +... ...++++.- ..+..........++|-++. .+.
T Consensus 372 Al~~L~~Wi~~~p~y-~~----l~~a-~~~~~~~~~-------------------~s~~~~~~l~~i~~~fLeaa~~~~~ 426 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKY-VH----LVSA-GENEDFENT-------------------KSFLDSSHLAHIQELFLEAARQLPT 426 (579)
T ss_pred HHHHHHHHHHhCccc-hh----cccc-CccccccCC-------------------cCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 666666666544221 00 0000 000000000 00000111122233333333 122
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-HHHHHHHH
Q 007329 496 KPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-VSAWNILL 571 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~~~~~~l~ 571 (608)
.+|+..+..|.-.|.-.|++++|...|+.++...+. |..+||.|+-.++...+.++|+..+.++ +|+ +.++..|.
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 244444445555555555555555555555544433 4555555555555555555555555555 343 33444444
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 007329 572 TGYAERGQGALAEEFFRK 589 (608)
Q Consensus 572 ~~~~~~g~~~~A~~~~~~ 589 (608)
-+|...|.+++|.+.|=.
T Consensus 506 IS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hhhhhhhhHHHHHHHHHH
Confidence 455555555555554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.7e-06 Score=78.98 Aligned_cols=214 Identities=15% Similarity=0.123 Sum_probs=142.7
Q ss_pred hhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHH
Q 007329 309 ELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVE 385 (608)
Q Consensus 309 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 385 (608)
.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+ .|....-.|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45667777777777777664 55667777777777777777777777777665 345566666667888888788888
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHHccCChHHHHHHHHHH-HHhCCCCchhHHHHHHHHhHhcCCHHHHHHH
Q 007329 386 TYQMMEAEGSM--------PDEITIASVLSACACLGNLDLGIKLHQLA-MRTGLISYIIIANTLIDMYSKCKCIDKALEV 456 (608)
Q Consensus 386 ~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 456 (608)
.++.-.....+ ++...-.. ..+.....+....++|-++ ...+..+|..++..|.-.|.-.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88776554211 00000000 1111112233344444443 3455557888888888888889999999999
Q ss_pred HccCCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 457 FHQIPD--K-NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSV-TLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 457 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
|+.... | |...||-|...++...+.++|+..|++.+ .++|+.+ ....|.-.|...|.+++|.+.|=.++
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL-qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL-QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH-hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 987763 3 55788888888888888888888888887 6666543 45566667778888888777666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00015 Score=68.45 Aligned_cols=218 Identities=13% Similarity=0.014 Sum_probs=143.0
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEGSMPDEI-TIASVLSACACLG-NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC 447 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 447 (608)
+-..+...++.++|+.+..++++. .|+.. .|..--..+...| ++++++..++.+.+.+ +-+..+|+.-...+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 334455667788888888888775 34443 3444444445555 5688888888888766 33444555444444455
Q ss_pred CCH--HHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc---Cc----H
Q 007329 448 KCI--DKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARI---GA----L 515 (608)
Q Consensus 448 g~~--~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~---~~----~ 515 (608)
|+. +++..+++++.+ .|...|+.....+...|+++++++.++++++.-+-|...|+.....+.+. |. .
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 542 566777766653 45677888888888888899999999998844455666666655555443 22 2
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc----CCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC---------
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRC----GRMKPAWNQFNSN----ERDVSAWNILLTGYAERG--------- 578 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g--------- 578 (608)
++..++...+++..+. +...|+.+..+|... ++..+|.+.+.+. .........|+..|....
T Consensus 200 e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~ 278 (320)
T PLN02789 200 DSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDT 278 (320)
T ss_pred HHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhh
Confidence 4567777777777766 778888888888773 3456677777776 335667777887776532
Q ss_pred ---------CHHHHHHHHHHHH
Q 007329 579 ---------QGALAEEFFRKMI 591 (608)
Q Consensus 579 ---------~~~~A~~~~~~m~ 591 (608)
..++|.++++.+.
T Consensus 279 ~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 279 VDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhccccccccHHHHHHHHHHHH
Confidence 3467888888883
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-05 Score=67.83 Aligned_cols=150 Identities=15% Similarity=0.012 Sum_probs=99.5
Q ss_pred HHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
+-..+.-.|+-+....+...... .|.......+....+.|++.+|+..+++....-++|..+|+.+.-+|.+.|+.+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh
Confidence 34445555666666555555332 233344446667777777777777777777666777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 517 CGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
+|..-|.++.+..+. ++..++.|.-.|.-.|+.+.|..++... ..|...-..|.......|++++|..+...-
T Consensus 152 ~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 152 EARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 777777777776554 5666677777777777777777777766 336666667777777777777777665443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00017 Score=68.76 Aligned_cols=198 Identities=13% Similarity=0.067 Sum_probs=131.9
Q ss_pred ChHHHHHHHhhCCC------CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 007329 348 NREEGEKVFSRMES------KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKL 421 (608)
Q Consensus 348 ~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 421 (608)
++.++...-+.+.. ++...+...+.+.........+..++.+-.+. .-...-|..-+ .+...|+++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHH
Confidence 45555555555543 45555555555444433333333333222221 11223333333 34567888899999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 422 HQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
++.+++.. +-|........+.+.+.++..+|.+.++++.. |+ ...+-.+..+|.+.|++.+|+.++++.....+-|
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 88877654 55666677778888899999999999988874 44 4566677888889999999999988888777778
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAW 567 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~ 567 (608)
+..|..|..+|...|+..++..-. .+.|...|+++.|...+... +.+..+|
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 888999999999888877765443 35567788888888888766 4454444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0026 Score=61.55 Aligned_cols=145 Identities=8% Similarity=0.082 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CCcccHHHHHHHHHhCCCchHHHHHHH
Q 007329 415 LDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD-----KNVISWTSIILGLRLNNRSFEALIFFR 489 (608)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (608)
.+....+++.+...-...-..+|-.+++...+..-+..|+.+|.+..+ .++..+++++.-+|. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 445555565555432222234566677777778888888888888773 255666777766664 56777888888
Q ss_pred HhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 490 KMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 490 ~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
--+.....++.-....+.-+...++-..+..+|++....++.|| ..+|..+++-=..-|++..+.++-++.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 77755555555556667777778888888888888887766555 467888888777888888888877766
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.3e-06 Score=68.19 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=92.6
Q ss_pred HHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----C
Q 007329 486 IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----E 561 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 561 (608)
.++++.+ .+.|+. +..+..++...|++++|...++.+....+. +...+..+..++.+.|++++|...|+++ +
T Consensus 14 ~~~~~al-~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLL-SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHH-HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4455554 344553 556788889999999999999999987766 7888899999999999999999999998 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 562 RDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 562 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+...|..+..++...|++++|.+.|++.++. .|++.
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~ 126 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADA 126 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 57889999999999999999999999999885 77764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.5e-05 Score=65.20 Aligned_cols=141 Identities=13% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC-cccHHHHHHHHHh----CC
Q 007329 405 VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKN-VISWTSIILGLRL----NN 479 (608)
Q Consensus 405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~----~~ 479 (608)
-...|+..|++++|.+..... -+......=+..+.|..+++-|...+++|.+-| ..+.+-|..++.+ .+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccch
Confidence 344566666666666655431 112222222344556666677777777766533 3444445444432 34
Q ss_pred CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH
Q 007329 480 RSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (608)
...+|.-+|++|..+.+|+..+.+..+.++...|++++|..+++.+...... ++.+...++..-...|.-.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 4667777777777557777777777777777777777777777777765554 45555555544445554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.6e-06 Score=81.57 Aligned_cols=210 Identities=13% Similarity=0.096 Sum_probs=170.9
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC
Q 007329 369 TMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK 448 (608)
Q Consensus 369 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 448 (608)
.+...+...|-...|..+++++. .+..++..|+..|+..+|..+.....+ -+|+...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 45567788888899999988764 466778889999999999999887776 3789999999999988888
Q ss_pred CHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 449 CIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
-+++|.++++..... .-..+.......++++++.+.|+.-.+-.+--..+|-.+..+..+.++++.|.+.|......
T Consensus 472 ~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 899999999875432 11111122234789999999999887444456778888888889999999999999998886
Q ss_pred CCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 529 GVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.+. +...||.+-.+|.+.|+-.+|...++++ ..+...|...+-...+.|.+++|++.+.++.+.
T Consensus 549 ~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 549 EPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred CCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 655 6788999999999999999999999998 445667888888899999999999999998754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.3e-05 Score=79.19 Aligned_cols=194 Identities=11% Similarity=0.069 Sum_probs=90.1
Q ss_pred CcccchHHHHHHHhcCChHHHHHHHhhCCC--------CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007329 332 DVSVCNPLIKMYLSFGNREEGEKVFSRMES--------KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA 403 (608)
Q Consensus 332 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 403 (608)
....|-..|......++.++|.+++++... .-...|.++++.-..-|.-+...++|++..+.- -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 344455555555666666666666655543 112345455444444444455555555555431 1122344
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchH
Q 007329 404 SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFE 483 (608)
Q Consensus 404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (608)
.|...|.+.+..++|.++++.|.+.- .-...+|...++.+.+..+-+.|.+++.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~------------------------- 1588 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLK------------------------- 1588 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHH-------------------------
Confidence 45555555555555555555555322 1333444444444444444444444444
Q ss_pred HHHHHHHhHhCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 484 ALIFFRKMMLNLKP--NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 484 A~~~~~~m~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.+.-++- ......-.+..-.+.|+.+++..+|+.....-++ -...|+.+++.=.+.|+.+.++.+|+++
T Consensus 1589 ------rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1589 ------RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred ------HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 44311111 1111222223333445555555555554443333 3445555555555555555555555554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00026 Score=74.76 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCC
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNN 479 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 479 (608)
..+..+..+|-+.|+.+++..+++++.+.. +.++.+.|-+...|... ++++|.+++.+. +..+...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 355556666666666666666666666655 55556666666666666 666666665542 23355555
Q ss_pred CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 480 RSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
++.++.++|.++....+.+...+..+++.....- |..--..++-.+...|-..++|+++..+++.
T Consensus 184 q~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 184 QYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR---------------EFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred cchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 6666666666666333333322222222221111 1111122333344555555666666666666
Q ss_pred c----CCCHHHHHHHHHHHH
Q 007329 560 N----ERDVSAWNILLTGYA 575 (608)
Q Consensus 560 ~----~~~~~~~~~l~~~~~ 575 (608)
+ +.|.....-++..|.
T Consensus 249 iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhcCCcchhhHHHHHHHHH
Confidence 5 334444455555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-05 Score=66.87 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH-hccCc--HHHHHH
Q 007329 447 CKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC-ARIGA--LMCGKE 520 (608)
Q Consensus 447 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~-~~~~~--~~~a~~ 520 (608)
.++.+++...++... ..|...|..+...|...|++++|...|++...-.+.+...+..+..++ ...|+ .++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 445555555555543 235567777777888888888888888877744445666777777764 56666 488888
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 521 IHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+++++.+.++. +...+..+...+...|++++|...|+++
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887766 6777778888888888888888888887
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.1e-05 Score=66.30 Aligned_cols=156 Identities=13% Similarity=0.004 Sum_probs=113.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCC
Q 007329 403 ASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNN 479 (608)
Q Consensus 403 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 479 (608)
..+-..+...|+-+....+........ +.+......++....+.|++..|...|.+... +|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 444455555666666655555433222 34445555677777888888888888887764 45678888888888888
Q ss_pred CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 480 RSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
++++|..-|.+..+-.+-+...++.+...+.-.|+++.|..++......+.. |..+-..|..+....|++++|.++...
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 8888888888888445556677888888888889999999888888776554 666677788888888999999887765
Q ss_pred c
Q 007329 560 N 560 (608)
Q Consensus 560 ~ 560 (608)
-
T Consensus 228 e 228 (257)
T COG5010 228 E 228 (257)
T ss_pred c
Confidence 4
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=65.15 Aligned_cols=109 Identities=7% Similarity=-0.029 Sum_probs=77.3
Q ss_pred HHHhHhCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CC
Q 007329 488 FRKMMLNLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ER 562 (608)
Q Consensus 488 ~~~m~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 562 (608)
+++.. ...| +......+...+...|++++|.+.++.+.+.++. +...+..+...|.+.|++++|...++.+ +.
T Consensus 6 ~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 6 LKDLL-GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred HHHHH-cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444 3334 3445566667777788888888888887776544 6667777788888888888888887776 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 563 DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 563 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+...|..+...|...|++++|...|++..+. .|+..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 119 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI--CGENP 119 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccc
Confidence 5677777778888888888888888888775 45544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00014 Score=69.35 Aligned_cols=136 Identities=20% Similarity=0.103 Sum_probs=113.9
Q ss_pred HhHhcCCHHHHHHHHccCC--C-CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC-HHHHHHHHHHHhccCcHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIP--D-KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN-SVTLVSILSACARIGALMCG 518 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~-~~~~~~ll~~~~~~~~~~~a 518 (608)
.+...|++++|+..++.+. . .|+..+......+.+.|+..+|.+.+++++ ...|+ ......+..++.+.|++++|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal-~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKAL-ALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3556789999999999876 2 456677777889999999999999999999 44454 66777888999999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 519 KEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..+++......+. |+..|..|..+|...|+..+|.... ..+|...|+++.|.+.+....+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~-------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLAR-------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999887666 8999999999999999999886544 45778889999999998888776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-05 Score=75.07 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=94.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcH
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGAL 515 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~ 515 (608)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.+...+-+...+..-...|.+.+++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 34455566666778888888888888766666666777777777778888888888855555666676677778888888
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.|+++.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+
T Consensus 251 ~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8888888888876555 5668888888888888888888887665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0097 Score=61.36 Aligned_cols=219 Identities=10% Similarity=0.017 Sum_probs=130.9
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHH--hhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh
Q 007329 69 ELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRL--CEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 69 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (608)
.....+++..|+....++.+.. |+ ..|..++.+ +.+.|..++|..+++.....+.. |..+...+-..|.+.|+.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 4456678888888888876633 33 334444553 35778888888777776666655 777777888888888888
Q ss_pred hhHHHHHcccCC--CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCC-C---------hh
Q 007329 147 GHAWYVFGKMCD--RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVP-D---------LK 214 (608)
Q Consensus 147 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~---------~~ 214 (608)
++|..++++... |+..-...+..+|.+.+.+.+-.+.--++.+. ++-+.+.|=.++....... . ..
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 888888888855 44333444555667776666544444444432 3445555555555443221 1 12
Q ss_pred hHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHc-----cCCCCCHhHHHHHHHHHHhcCChhHHHHHHHH
Q 007329 215 RGKEVHVHVIRFG-YEADVDVVNALITMYVKCGDLVRARLVFD-----GMPKRDRISWNAMISGYFENGEYMKGLMLFIM 288 (608)
Q Consensus 215 ~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 288 (608)
-|.+..+.+++.+ ..-+..-...-...+...|++++|.+++. ....-+...-+.-+..+...++|.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3455555555544 21122222223334456677888888773 22223444555566777777888888888877
Q ss_pred HHHCC
Q 007329 289 MREVL 293 (608)
Q Consensus 289 m~~~~ 293 (608)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 77765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.5e-05 Score=67.96 Aligned_cols=59 Identities=19% Similarity=0.014 Sum_probs=30.1
Q ss_pred cchHHHHHHHhcCChHHHHHHHhhCCC--CC-h---hhHHHHHHHHHcCCCchHHHHHHHHHHHC
Q 007329 335 VCNPLIKMYLSFGNREEGEKVFSRMES--KD-V---VSWTTMISCYEGSVLPDKAVETYQMMEAE 393 (608)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 393 (608)
.+..+...+...|++++|...|+++.. |+ . ..+..+..++.+.|++++|...++++.+.
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344455555555566666555555443 21 1 23344445555555555555555555543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00032 Score=66.24 Aligned_cols=187 Identities=12% Similarity=0.046 Sum_probs=139.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC-CHHHHHHHHccCCC---CCcccHHHHHHHHHhCCC
Q 007329 405 VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK-CIDKALEVFHQIPD---KNVISWTSIILGLRLNNR 480 (608)
Q Consensus 405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 480 (608)
+-..+...+..++|+.+.+.+++.+ +-+..+|+.-..++.+.| .+++++..++++.+ ++...|+.....+.+.|+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc
Confidence 3334445678889999999988766 444455665555666667 67999999988774 344567766666666666
Q ss_pred c--hHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc---CCH----H
Q 007329 481 S--FEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC---GRM----K 551 (608)
Q Consensus 481 ~--~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~ 551 (608)
. ++++++++++++.-+-|..+|.....++...|+++++++.++++++.++. +...|+....++.+. |+. +
T Consensus 122 ~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 122 DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 3 67899999998666678899999999999999999999999999998877 777888777666554 333 4
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHc
Q 007329 552 PAWNQFNSN----ERDVSAWNILLTGYAER----GQGALAEEFFRKMIDS 593 (608)
Q Consensus 552 ~A~~~~~~~----~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~ 593 (608)
++.+...++ +.|...|+-+...+... ++..+|.+.+.+..+.
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 666766555 55788999888888773 4456788888887664
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00015 Score=75.65 Aligned_cols=140 Identities=8% Similarity=-0.018 Sum_probs=91.0
Q ss_pred CCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHH
Q 007329 430 LISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSIL 506 (608)
Q Consensus 430 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll 506 (608)
...+...+..|..+..+.|+.++|..+++...+ |+ ...+..+...+.+.+++++|+..+++....-+-+......+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 344566666677777777777777777776653 32 345555666777777777777777777744455556666666
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHH
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNIL 570 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l 570 (608)
.++.+.|++++|..+|+++...++. +...+..+..++...|+.++|...|+++ .+....|+.+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 6777777777777777777763332 3566666777777777777777777766 4444444444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.5e-05 Score=61.78 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=71.5
Q ss_pred CCCchHHHHHHHHhHhCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHhHhcCCHHH
Q 007329 478 NNRSFEALIFFRKMMLNLKPN---SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDG--FLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 552 (608)
.++...+...++.+....+.+ ......+...+...|++++|...|+.+.+....+.. .....|..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 566666666666666333333 223334556667777777777777777766533321 233346667777788888
Q ss_pred HHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 553 AWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 553 A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
|+..++.+ ...+..+......|.+.|++++|...|++.
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88887776 223455666777778888888888777754
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00047 Score=60.36 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=83.6
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh----cCC
Q 007329 238 LITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL----VGD 313 (608)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~ 313 (608)
-...|+..|++++|++...... +....-.=+..+.+..+++-|.+.+++|.+. -+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 3444666666666666666522 2333333344455666666666666666653 244555555555443 234
Q ss_pred hhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCc-hHHHHHHHH
Q 007329 314 EKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESK---DVVSWTTMISCYEGSVLP-DKAVETYQM 389 (608)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~-~~a~~~~~~ 389 (608)
...|.-+|++|-+. .+|+..+.+....++...|++++|..++++...+ +..+...++-+-...|.. +-..+.+.+
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 66666677766543 3666777777777777777777777777776652 333433333333334433 334455555
Q ss_pred HHHC
Q 007329 390 MEAE 393 (608)
Q Consensus 390 m~~~ 393 (608)
+...
T Consensus 268 Lk~~ 271 (299)
T KOG3081|consen 268 LKLS 271 (299)
T ss_pred HHhc
Confidence 5544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00013 Score=76.21 Aligned_cols=197 Identities=10% Similarity=-0.056 Sum_probs=138.1
Q ss_pred HHHcCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 373 CYEGSVLPDKAVETYQMMEA--EGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
...+.+....+.+-+-+++. .....+...+..|.....+.|.+++|..+++...+.. +.+......+...+.+.+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccH
Confidence 34445555555444444432 2345568888888899999999999999999888765 44455666778888999999
Q ss_pred HHHHHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 451 DKALEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 451 ~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
++|+...++..+.++ .....+..++.+.|++++|.++|++.....+-+..++..+..++...|+.++|...|+.+.+
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998875433 45666778889999999999999999864445578899999999999999999999998886
Q ss_pred hCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCC---------CHHHHHHHHHHHHhc
Q 007329 528 IGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNER---------DVSAWNILLTGYAER 577 (608)
Q Consensus 528 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~l~~~~~~~ 577 (608)
..- +....|+.+ .+++..-...+++..+ ........+..|.+.
T Consensus 217 ~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 217 AIG-DGARKLTRR------LVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred hhC-cchHHHHHH------HHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 532 223333332 2455555566666611 234455566555543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0098 Score=57.75 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=133.1
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHhHhcCCHHHHHHHHc
Q 007329 380 PDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS-YIIIANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
.+....+++++...-..--..+|..+++...+..-+..|..+|.++.+.+..+ .+.++++++.-|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 56667777777654322233567788888888889999999999999887666 7888888888766 678899999999
Q ss_pred cCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh-C--
Q 007329 459 QIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRI-G-- 529 (608)
Q Consensus 459 ~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-- 529 (608)
--.+ +| +.--...++-+...|+-..|..+|++.. .++.|+ ...|..++.--...|++..+.++-++.... .
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6553 33 3444567788888999999999999999 545654 468999999999999999999988866532 1
Q ss_pred CCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 530 VAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 530 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..+....-..+++.|.=.+.+.--..-++.+
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 3444445556777777666665544444444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.9e-06 Score=49.60 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF 298 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 298 (608)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00085 Score=71.00 Aligned_cols=80 Identities=14% Similarity=0.195 Sum_probs=37.8
Q ss_pred hHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCC
Q 007329 199 TFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGE 278 (608)
Q Consensus 199 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (608)
.+..+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|... ++++|++++.+. +..+...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 34444444444444444444444444444 33444555555555555 555555544332 222444445
Q ss_pred hhHHHHHHHHHHH
Q 007329 279 YMKGLMLFIMMRE 291 (608)
Q Consensus 279 ~~~a~~~~~~m~~ 291 (608)
+.++.+++.++..
T Consensus 185 ~~~~~e~W~k~~~ 197 (906)
T PRK14720 185 YVGIEEIWSKLVH 197 (906)
T ss_pred chHHHHHHHHHHh
Confidence 5555555555544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=8e-05 Score=71.69 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=85.5
Q ss_pred hHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCCh
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDL 213 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 213 (608)
..|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++..+.. +-|...+..-.+.|.+.++.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCH
Confidence 4445555566778888888888877666666677777777777778888888777543 44555555555667777777
Q ss_pred hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 214 KRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 214 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
+.|+++.+++.+.. +.+..+|..|..+|.+.|+++.|+-.++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777663 3344577777777777777777777777665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.6e-06 Score=48.77 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
+|++++.+|.+.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00064 Score=59.12 Aligned_cols=182 Identities=11% Similarity=0.039 Sum_probs=94.7
Q ss_pred CCCchHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHH
Q 007329 377 SVLPDKAVETYQMMEAE---G-SMPDEIT-IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCID 451 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~---g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 451 (608)
..+.++..+++.++... | ..++..+ |..+.-+....|+.+.|...++.+.+.- +-+..+...-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 44566777776666532 3 3444433 3444555556666666666666655443 222222222222234456666
Q ss_pred HHHHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 452 KALEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 452 ~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
+|.++++.+.+.|+ +++---+......|+.-+|++-+.+-...+..|...|.-+...|...|+++.|.-.++++.=.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 66666666654332 333333444445555556665555555555566666666666666666666666666665543
Q ss_pred CCCCCccHHHHHHHHhHhcC---CHHHHHHHHHhc
Q 007329 529 GVAFDGFLPNALLDMYVRCG---RMKPAWNQFNSN 560 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~ 560 (608)
.+. ++..+..+.+.+.-.| +++-|.+.+.+.
T Consensus 184 ~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 184 QPF-NPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred CCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 332 3444444555443333 344455555555
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=47.65 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDP 296 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (608)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888777766
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=47.01 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKGNW 597 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 597 (608)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=59.15 Aligned_cols=92 Identities=15% Similarity=0.078 Sum_probs=61.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
...+...+.+.|++++|.+.|+......+.+...+..+...+...|++++|..+++...+.++. +...+..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 3344555666677777777776666434446666677777777777777777777777665533 455566667777777
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++++|...|++.
T Consensus 99 g~~~~A~~~~~~a 111 (135)
T TIGR02552 99 GEPESALKALDLA 111 (135)
T ss_pred CCHHHHHHHHHHH
Confidence 7777777777766
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0055 Score=53.55 Aligned_cols=183 Identities=11% Similarity=0.103 Sum_probs=132.0
Q ss_pred hcCChHHHHHHHhhCCC--------CCh-hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCC
Q 007329 345 SFGNREEGEKVFSRMES--------KDV-VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVL-SACACLGN 414 (608)
Q Consensus 345 ~~~~~~~a~~~~~~~~~--------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~ 414 (608)
...+.++..+++.++.. ++. ..|..++-+....|+.+.|...++.+...- |.+.-...+= --+...|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 34567888888877754 233 235556667778888999999999988763 4443322222 22445789
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHh
Q 007329 415 LDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKM 491 (608)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 491 (608)
+++|.++++.+.+.+ +.|..++..-+.+....|+--+|++-+....+ .|...|.-+...|...|++++|.-.++++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998877 66677777666666667777778777766553 57889999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCC
Q 007329 492 MLNLKPNSVTLVSILSACARIG---ALMCGKEIHAHALRIGV 530 (608)
Q Consensus 492 ~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~ 530 (608)
+--.|-++..+..+...+.-.| +.+-+.+++.+..+...
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 8444446666666666655444 66778889998888654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0008 Score=55.92 Aligned_cols=122 Identities=10% Similarity=0.077 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC---cchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCc--hhHHHHH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPD---VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEAD--VDVVNAL 238 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~l 238 (608)
|..++..+ ..++...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+...+....++ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33344443 3667777777777776643 222 12222344556677777777777777777653332 2234456
Q ss_pred HHHHHhcCCHHHHHHHHccCCCC--CHhHHHHHHHHHHhcCChhHHHHHHHH
Q 007329 239 ITMYVKCGDLVRARLVFDGMPKR--DRISWNAMISGYFENGEYMKGLMLFIM 288 (608)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 288 (608)
...+...|++++|+..++..... ....+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777778888888888765443 344566666777777777777777764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00045 Score=55.23 Aligned_cols=98 Identities=13% Similarity=-0.023 Sum_probs=63.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC----HHHHHHHH
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD----VSAWNILL 571 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~----~~~~~~l~ 571 (608)
++..+...+.+.|++++|.+.++.+.+..+.. ....+..++.++.+.|++++|.+.++.+ .|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34555566666677777777777666543321 1234455677777777777777777766 333 44566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 572 TGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 572 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..+...|+.++|...++++++. .|++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 110 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR--YPGSS 110 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH--CcCCh
Confidence 7777778888888888887775 45443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.018 Score=57.59 Aligned_cols=197 Identities=13% Similarity=0.007 Sum_probs=93.8
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHH-------
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTT------- 369 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 369 (608)
|....-.+..++.+.|.-++|.+.+-. .+.+ ...+..|...++|.+|.++-+...-|.+.+.-+
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 444455556666677776666655532 2211 345566777777777777777666554443221
Q ss_pred -------HHHHHHcCCCchHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH
Q 007329 370 -------MISCYEGSVLPDKAVETYQMMEAE----GSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIAN 438 (608)
Q Consensus 370 -------li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (608)
-|..+.+.|..-+|-+++.+|.+. +.+|-..--..++.++.-. +..++..-.+...
T Consensus 922 ~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE-~h~~~ik~~~~~~------------ 988 (1189)
T KOG2041|consen 922 ADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVE-NHRQTIKELRKID------------ 988 (1189)
T ss_pred hhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh------------
Confidence 123344455555555555555432 2222222111222222110 1111111111111
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCC-----------CCcccHH--HHHHHHHhCCCchHHHHHHHHhH--hCCCCCHHHHH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIPD-----------KNVISWT--SIILGLRLNNRSFEALIFFRKMM--LNLKPNSVTLV 503 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~--~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~~~~~~ 503 (608)
+.|..++|..+++...- .....|. .|..-....|..+.|++.--.+. +.+-|....|.
T Consensus 989 -------~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiyS 1061 (1189)
T KOG2041|consen 989 -------KHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYS 1061 (1189)
T ss_pred -------hcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHH
Confidence 23444444444433221 1122333 34444556788888877766666 56667777777
Q ss_pred HHHHHHhccCcHHHHHHHH
Q 007329 504 SILSACARIGALMCGKEIH 522 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~ 522 (608)
.+.-+-+....+...-+.|
T Consensus 1062 llALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1062 LLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHHhhhhhhhhhHHHH
Confidence 6665555444444443333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0012 Score=53.93 Aligned_cols=98 Identities=11% Similarity=0.022 Sum_probs=70.8
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHH
Q 007329 462 DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALL 541 (608)
Q Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 541 (608)
+.+......+...+...|++++|..+|+-...--+-+..-|..|..+|-..|++++|...+..+...++. |+..+-.+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag 110 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHH
Confidence 3333444555666777888888888888777333445556667777777778888888888888877764 777777788
Q ss_pred HHhHhcCCHHHHHHHHHhc
Q 007329 542 DMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~ 560 (608)
.+|.+.|+.+.|.+.|+.+
T Consensus 111 ~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 8888888888888877765
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=4.3e-05 Score=43.89 Aligned_cols=30 Identities=37% Similarity=0.661 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLV 294 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 294 (608)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=54.35 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHHHhCCC-CCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007329 513 GALMCGKEIHAHALRIGVA-FDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFR 588 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 588 (608)
|+++.|+.+++++.+..+. ++...+-.+..+|.+.|++++|.+++++. ..+......+..+|...|++++|++.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4455555555555544332 12333333455555555555555555443 1122333344555555566666655555
Q ss_pred H
Q 007329 589 K 589 (608)
Q Consensus 589 ~ 589 (608)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.6e-05 Score=43.77 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 595 (608)
++|++++++|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00046 Score=52.38 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=47.9
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCH
Q 007329 505 ILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQG 580 (608)
Q Consensus 505 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 580 (608)
+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++.. +.+...+..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 344444455555555555555443322 2234444555555666666666666554 23344566666666666666
Q ss_pred HHHHHHHHHHHH
Q 007329 581 ALAEEFFRKMID 592 (608)
Q Consensus 581 ~~A~~~~~~m~~ 592 (608)
+.|...+++..+
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 666666666654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.053 Score=51.27 Aligned_cols=119 Identities=18% Similarity=0.216 Sum_probs=83.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC 517 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~ 517 (608)
+.-+.-+...|+...|.++-.+..=|+-.-|...+.+|+..+++++-.++... +-+++-|..++.+|.+.|...+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHH
Confidence 44455566778888888888888878888888888888888888876665432 2344778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHH
Q 007329 518 GKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLT 572 (608)
Q Consensus 518 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~ 572 (608)
|..++.++ .+..-+..|.++|++.+|.+.-.+ ..|...+..+..
T Consensus 256 A~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~-~kd~~~L~~i~~ 299 (319)
T PF04840_consen 256 ASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK-EKDIDLLKQILK 299 (319)
T ss_pred HHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH-cCCHHHHHHHHH
Confidence 88887761 124567888888888888665443 234444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.089 Score=53.52 Aligned_cols=76 Identities=12% Similarity=0.046 Sum_probs=35.3
Q ss_pred HhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIH 522 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 522 (608)
-+...|+-.+|.++-.+.+-||-..|---+.+++..+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+++
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----sPIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----SPIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----CCCCchhHHHHHHhcccHHHHhhhh
Confidence 33444555555555555554444444444455555555444444333332 1333444444555555555544444
Q ss_pred H
Q 007329 523 A 523 (608)
Q Consensus 523 ~ 523 (608)
.
T Consensus 768 p 768 (829)
T KOG2280|consen 768 P 768 (829)
T ss_pred h
Confidence 3
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00059 Score=51.74 Aligned_cols=92 Identities=15% Similarity=0.070 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
|..+...+...|++++|...+++.....+.+...+..+...+...+++++|.+.++...+.... +...+..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 4456666777788888888888777444445566777777777788888888888887776544 445677777888888
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++++|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 8888888877765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0015 Score=52.12 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=64.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPN---SVTLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALL 541 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~ 541 (608)
++..++..+.+.|++++|.+.|+.+....+.+ ...+..+..++.+.|++++|.+.++.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44556666777777777887777777222211 3455667777888888888888888777654332 234566677
Q ss_pred HHhHhcCCHHHHHHHHHhc
Q 007329 542 DMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~ 560 (608)
.++.+.|++++|.+.++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHhCChHHHHHHHHHH
Confidence 7788888888888888776
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00074 Score=65.46 Aligned_cols=89 Identities=7% Similarity=-0.071 Sum_probs=75.3
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM 550 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (608)
-...+...|++++|+++|++++...+.+...|..+..++...|++++|+..++++++..+. +...|..++.+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 3456678899999999999998555667778888889999999999999999999887665 567788888999999999
Q ss_pred HHHHHHHHhc
Q 007329 551 KPAWNQFNSN 560 (608)
Q Consensus 551 ~~A~~~~~~~ 560 (608)
++|...|+++
T Consensus 87 ~eA~~~~~~a 96 (356)
T PLN03088 87 QTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHH
Confidence 9999999887
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.034 Score=55.24 Aligned_cols=264 Identities=13% Similarity=0.132 Sum_probs=128.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHH---------HHHHhcCCCCCCcchHHHHHHHhcCCCChh--hHHHHHHHHHHhCCCC
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLY---------QRMFWVGGVKPDVYTFPCVLRTCGGVPDLK--RGKEVHVHVIRFGYEA 230 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~---------~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~g~~~ 230 (608)
+.+.+-+..|...|.+++|.++- +.+... ..+.-.+++.=++|.+.++.. +...-++++.++|-.|
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 34555566777888888776541 211111 123334555556666655544 3334456777788777
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh
Q 007329 231 DVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL 310 (608)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 310 (608)
+... +...++-.|++.+|.++|.+ .|.-..|+++|..|+-- -...-+..
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~ 682 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLG 682 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhh
Confidence 7654 34456677888888888765 45555566666555321 01122233
Q ss_pred cCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 311 VGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
.|..++-..+.+.--+. .-+..--.+...++...|+.++|..+. ..+|-.+-++++-+++
T Consensus 683 ~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkl 742 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKL 742 (1081)
T ss_pred cCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhc
Confidence 33333333332221111 111111122334444555555554432 1222222233332222
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHH
Q 007329 391 EAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTS 470 (608)
Q Consensus 391 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (608)
- ..+..+...+...+-+...+..|-++|..|-+. .++++.....+++++|..+-++.++--...|.-
T Consensus 743 d----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~p 809 (1081)
T KOG1538|consen 743 D----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMP 809 (1081)
T ss_pred c----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccch
Confidence 2 123344444444455555666666666655432 345556666677777777666665422222222
Q ss_pred HH-------------HHHHhCCCchHHHHHHHHhH
Q 007329 471 II-------------LGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 471 l~-------------~~~~~~~~~~~A~~~~~~m~ 492 (608)
.. .+|.+.|+..+|.++++++.
T Consensus 810 yaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 810 YAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 22 34445566666666666554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.001 Score=54.29 Aligned_cols=100 Identities=7% Similarity=-0.152 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
-...-.+..-+...|++++|..+|+.+....+. +..-|-.|.-++-..|++++|++.+..+ +.|+..+-.+..++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 345556667778899999999999999988776 6777778999999999999999999998 66789999999999
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCCCc
Q 007329 575 AERGQGALAEEFFRKMIDS-KGNWRK 599 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~~~-g~~p~~ 599 (608)
...|+.+.|.+.|+..+.. +-.|..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhccChhH
Confidence 9999999999999988765 334443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0019 Score=55.56 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=27.4
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhH-hCC-CCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMM-LNL-KPN-SVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~-~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
.+..+...+...|++++|+..|++.. ... .++ ...+..+...+.+.|++++|...++++.+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444445555555555555544 111 111 233444444444445555555555444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.084 Score=49.95 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=75.5
Q ss_pred cchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007329 335 VCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGN 414 (608)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 414 (608)
+.+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... +-++.-|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455566677778888888888888778888888888888888888776665332 1234667777888888888
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 415 LDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
..+|..+... ++ +..-+..|.++|++.+|.+.--+
T Consensus 253 ~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777776654 11 14456677777877777665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00052 Score=61.40 Aligned_cols=126 Identities=15% Similarity=0.026 Sum_probs=89.6
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP 552 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 552 (608)
.-+.+.+++.+|+..|.+.+.-.+-|.+-|..-..+|.+.|.++.|.+-.+..+..++. -...|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 45678889999999999998555567778888889999999999999888888876544 45678889999999999999
Q ss_pred HHHHHHhc---CCCHHHHH-HHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCc
Q 007329 553 AWNQFNSN---ERDVSAWN-ILLTGYAERGQGA---LAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 553 A~~~~~~~---~~~~~~~~-~l~~~~~~~g~~~---~A~~~~~~m~~~g~~p~~ 599 (608)
|.+.|++. .|+-.+|. .|-.+-.+.+... .+..-++-....|.-||.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 99999888 66655554 4444434444443 333333333333433443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0018 Score=62.81 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=67.3
Q ss_pred HHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH
Q 007329 441 IDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC 517 (608)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~ 517 (608)
...+...|++++|++.|++..+ .+...|..+..+|.+.|++++|+..+++++.-.+.+...|..+..+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 4455667888888888887763 2445677777788888888888888888874444466677778888888888888
Q ss_pred HHHHHHHHHHhCCC
Q 007329 518 GKEIHAHALRIGVA 531 (608)
Q Consensus 518 a~~~~~~~~~~~~~ 531 (608)
|...++++++.++.
T Consensus 89 A~~~~~~al~l~P~ 102 (356)
T PLN03088 89 AKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888776544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0018 Score=48.81 Aligned_cols=79 Identities=16% Similarity=0.043 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHhCCCCchhHHH
Q 007329 368 TTMISCYEGSVLPDKAVETYQMMEAEGS-MPDEITIASVLSACACLG--------NLDLGIKLHQLAMRTGLISYIIIAN 438 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (608)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455566667999999999999999999 999999999999887643 2445678889999999999999999
Q ss_pred HHHHHhHh
Q 007329 439 TLIDMYSK 446 (608)
Q Consensus 439 ~li~~~~~ 446 (608)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0002 Score=53.00 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=58.4
Q ss_pred CCCchHHHHHHHHhHhCCC--CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 478 NNRSFEALIFFRKMMLNLK--PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
.|+++.|+.+++++....+ ++...+..+..++.+.|++++|.++++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788999999999983222 3455566688999999999999999988 433332 23344456888999999999999
Q ss_pred HHHh
Q 007329 556 QFNS 559 (608)
Q Consensus 556 ~~~~ 559 (608)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=59.42 Aligned_cols=93 Identities=14% Similarity=0.077 Sum_probs=76.5
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC-CHHHHHHHHHHHhccCcHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKP-NSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p-~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
..+.+++.+|+..|.+... .|.+-|..-..+|.+.|.++.|++-.+..+ .+.| -..+|..|..+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 4578999999999998773 567888889999999999999999988887 4445 4568999999999999999999
Q ss_pred HHHHHHHHhCCCCCccHHHH
Q 007329 520 EIHAHALRIGVAFDGFLPNA 539 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~ 539 (608)
+.|++.++. .|+-.+|-.
T Consensus 170 ~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHhhhcc--CCCcHHHHH
Confidence 999988874 455555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0015 Score=49.23 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhHHHHHHHHHhhcC--------ChhhHHHHHHHHHHhCCCCCcccc
Q 007329 266 WNAMISGYFENGEYMKGLMLFIMMREVLV-DPDFMTLSSVISASELVG--------DEKLGREVHGYVIKMGFSDDVSVC 336 (608)
Q Consensus 266 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 336 (608)
-...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 999999999999877653 244667889999999999999999
Q ss_pred hHHHHHHHh
Q 007329 337 NPLIKMYLS 345 (608)
Q Consensus 337 ~~l~~~~~~ 345 (608)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0027 Score=59.29 Aligned_cols=126 Identities=11% Similarity=0.077 Sum_probs=87.3
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA-CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
+|..++....+.+..+.|..+|.+.+.....+...|...... +...++.+.|..+|+...+. +..+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 466667777777777777777777773223344445444444 33356777788888888765 3336777888888888
Q ss_pred hcCCHHHHHHHHHhc---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 546 RCGRMKPAWNQFNSN---ERD----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+.|+.+.|..+|+++ -+. ...|...+..=.+.|+.+.+..+.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999888 222 358888888888889999999988888875
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.17 Score=51.55 Aligned_cols=136 Identities=13% Similarity=0.034 Sum_probs=72.2
Q ss_pred cCCCCChhhHHHH-----HHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcC---ChhhHHHHHcccCC--
Q 007329 89 LNICVDEDALVNL-----VRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFG---DLGHAWYVFGKMCD-- 158 (608)
Q Consensus 89 ~g~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-- 158 (608)
-|++.....|..+ |.-+...+.+..|+++-..+...-... ..++......+.+.. +.+.+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 3555555555443 344556677777777766653322222 455566666665552 22333333344433
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGG---VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
....+|..+.+-....|+++-|..+++.=...+. +-.+..-+...+.-+...|+.+....++-++..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 4556677777777777888888777764222110 011223344555555566666655555554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00057 Score=47.56 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=45.1
Q ss_pred HHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
+...+...|++++|.+.|+++ .| +...|..+...+...|++++|..+|+++++. .|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 456778888888888888888 33 5678888888888999999999999988875 6654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=63.93 Aligned_cols=116 Identities=13% Similarity=0.028 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHccCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 007329 231 DVDVVNALITMYVKCGDLVRARLVFDGMPKR------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSV 304 (608)
Q Consensus 231 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 304 (608)
+......+++......+++.+..++-+.... -..+..++|+.|.+.|..++++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444444555555555566666655554432 2334567888888888888888888888888888888888888
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhc
Q 007329 305 ISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSF 346 (608)
Q Consensus 305 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (608)
|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888877777666666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0081 Score=56.37 Aligned_cols=125 Identities=11% Similarity=0.139 Sum_probs=63.5
Q ss_pred HHHhc-CChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC-----CCHH-HHHHH
Q 007329 342 MYLSF-GNREEGEKVFSRMES-----K----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM-----PDEI-TIASV 405 (608)
Q Consensus 342 ~~~~~-~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-t~~~l 405 (608)
.|... |++++|.+.|++..+ . -...+..+...+.+.|++++|.++|++....... .+.. .|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 33344 555555555554432 1 1123445566777778888888888777654322 1121 22223
Q ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCCc--hhHHHHHHHHhHh--cCCHHHHHHHHccCCCCCcc
Q 007329 406 LSACACLGNLDLGIKLHQLAMRT--GLISY--IIIANTLIDMYSK--CKCIDKALEVFHQIPDKNVI 466 (608)
Q Consensus 406 l~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~ 466 (608)
+-.+...|+...|...++..... ++..+ ..+...|+.+|-. ...++++..-|+.+.+-|..
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 33445567777777777766533 23222 3344556666643 34566777777777665543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.12 Score=48.44 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=75.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCC-CChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007329 167 LIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGV-PDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKC 245 (608)
Q Consensus 167 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 245 (608)
.+..|...|++..|-+++..+- ..|... |+++.|.+.|++..+. |...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA----------------~~ye~~~~d~e~Ai~~Y~~A~~~---------------y~~e 148 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA----------------EIYEEQLGDYEKAIEYYQKAAEL---------------YEQE 148 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH----------------HHHCCTT--HHHHHHHHHHHHHH---------------HHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHH---------------HHHC
Confidence 3556666777766666665543 234444 6777777776655432 2222
Q ss_pred CCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----Chh-HHHHHHHHHhhcCChhhHHH
Q 007329 246 GDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP-----DFM-TLSSVISASELVGDEKLGRE 319 (608)
Q Consensus 246 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~-~~~~ll~~~~~~~~~~~a~~ 319 (608)
|....+.. ++..+...+.+.|++++|.++|++........ +.. .|...+-++...|+...|.+
T Consensus 149 ~~~~~a~~-----------~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 149 GSPHSAAE-----------CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp T-HHHHHH-----------HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CChhhHHH-----------HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 32222222 33445556666677777777776665432211 111 12222334445566666666
Q ss_pred HHHHHHHhC--CCCC--cccchHHHHHHHhc--CChHHHHHHHhhCCCCChhhHH
Q 007329 320 VHGYVIKMG--FSDD--VSVCNPLIKMYLSF--GNREEGEKVFSRMESKDVVSWT 368 (608)
Q Consensus 320 ~~~~~~~~~--~~~~--~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~ 368 (608)
.++...... +..+ ......|+.++-.. ..++++..-|+.+.+.|..--.
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~ 272 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTK 272 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHH
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHH
Confidence 666654331 1111 12334445554432 3466666666666665544333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.15 Score=48.93 Aligned_cols=218 Identities=11% Similarity=0.063 Sum_probs=127.2
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHH------
Q 007329 368 TTMISCYEGSVLPDKAVETYQMMEAEGSMP----DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIA------ 437 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------ 437 (608)
..++..+.. +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+..+.-.. |+...-
T Consensus 265 ~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls 340 (549)
T PF07079_consen 265 EPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLS 340 (549)
T ss_pred HHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcC
Confidence 334444444 5577777776666553222 13468888888888999999988887665432 222211
Q ss_pred -HHHHHHhHh-c---CCHHHHHHHHccCCCCCccc---HHHH---HHHHHhCCC-chHHHHHHHHhHhCCCC-CHHHHHH
Q 007329 438 -NTLIDMYSK-C---KCIDKALEVFHQIPDKNVIS---WTSI---ILGLRLNNR-SFEALIFFRKMMLNLKP-NSVTLVS 504 (608)
Q Consensus 438 -~~li~~~~~-~---g~~~~A~~~~~~~~~~~~~~---~~~l---~~~~~~~~~-~~~A~~~~~~m~~~~~p-~~~~~~~ 504 (608)
..+.+..+. . -+..+=+.+|+.....|+.. ...| ..-+-+.|. -++|+++++.+. .+.+ |...-+.
T Consensus 341 ~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il-~ft~yD~ec~n~ 419 (549)
T PF07079_consen 341 PKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL-QFTNYDIECENI 419 (549)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH-HhccccHHHHHH
Confidence 112222221 1 12222334444444444321 1112 233455665 788999999988 3333 3333333
Q ss_pred HH----HHHhc---cCcHHHHHHHHHHHHHhCCCCCc----cHHHHHHHH--hHhcCCHHHHHHHH---HhcCCCHHHHH
Q 007329 505 IL----SACAR---IGALMCGKEIHAHALRIGVAFDG----FLPNALLDM--YVRCGRMKPAWNQF---NSNERDVSAWN 568 (608)
Q Consensus 505 ll----~~~~~---~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~g~~~~A~~~~---~~~~~~~~~~~ 568 (608)
+. .+|.. ...+.+-..+-+-+.+.|+.|-. ..-|.|.++ +...|++.++.-.- -++.|.+.+|.
T Consensus 420 v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~R 499 (549)
T PF07079_consen 420 VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYR 499 (549)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHH
Confidence 22 23322 23444555555566677887643 345555554 56789998886532 34488999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007329 569 ILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 569 ~l~~~~~~~g~~~~A~~~~~~m 590 (608)
.++-.+....++++|.+++..+
T Consensus 500 LlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 500 LLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHhhHHHHHHHHHhC
Confidence 9998888999999999998876
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.063 Score=50.62 Aligned_cols=287 Identities=10% Similarity=-0.017 Sum_probs=142.9
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (608)
-.++.++.++..|+..+.......+. +..-|..-+..+...+++++|.--.+.-++.... ....+...-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 34567778888888888888875532 2334444444455555565554443333322211 111223333444444555
Q ss_pred hhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHH-HHhcCCCChhhHHHHHHHHHH
Q 007329 147 GHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVL-RTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 147 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~ 225 (608)
.+|.+.|+ +...| ....++..++.......-+|...++..+- .++.-.|+.++|.++--...+
T Consensus 134 i~A~~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 134 IEAEEKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred HHHHHHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 55555555 11111 11223333333322221123333333322 234455666666665555444
Q ss_pred hCCCCchhHHHHHHHH--HHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHH
Q 007329 226 FGYEADVDVVNALITM--YVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSS 303 (608)
Q Consensus 226 ~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 303 (608)
.. . ...+...+++ +--.++.+.|...|++...-|+....+ +..-.-.+.++.++..|
T Consensus 198 ld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s--------k~~~~~~k~le~~k~~g---------- 256 (486)
T KOG0550|consen 198 LD-A--TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS--------KSASMMPKKLEVKKERG---------- 256 (486)
T ss_pred cc-c--chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH--------HhHhhhHHHHHHHHhhh----------
Confidence 32 1 1112222222 223456666666666665544332221 11111122233333332
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhC---CCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhh---HHHHHHHHHcC
Q 007329 304 VISASELVGDEKLGREVHGYVIKMG---FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVS---WTTMISCYEGS 377 (608)
Q Consensus 304 ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~ 377 (608)
.-..+.|++..|.+.|.+.+... ..++...|........+.|+.++|+.--++..+-|..- |..-..++...
T Consensus 257 --N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 257 --NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred --hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 12345677777777777766442 34445556666666777888888888887777755432 22223356667
Q ss_pred CCchHHHHHHHHHHHCC
Q 007329 378 VLPDKAVETYQMMEAEG 394 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g 394 (608)
++|++|.+-+++..+..
T Consensus 335 e~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88888888888876653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.005 Score=52.95 Aligned_cols=80 Identities=11% Similarity=-0.005 Sum_probs=41.6
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCC--CC----cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPD--KN----VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
.+..+...+...|++++|...|++..+ ++ ...+..+...+.+.|++++|+..+++.....+.+...+..+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555555566666666666665541 11 134555555666666666666666666532222344444444455
Q ss_pred hccCcH
Q 007329 510 ARIGAL 515 (608)
Q Consensus 510 ~~~~~~ 515 (608)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.016 Score=54.46 Aligned_cols=270 Identities=12% Similarity=0.032 Sum_probs=140.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 007329 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348 (608)
Q Consensus 269 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (608)
....+.+...+..|+..+....+.... +..-|..=...+...++++.+.--.+.-++.. +-......-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 345666667777777777776665322 23334444444555555555554443333221 1112233344445555555
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHccCChHHHHHHHHHHH
Q 007329 349 REEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGS-MPDEITIASVL-SACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~ 426 (608)
..+|.+.++.-. .| ....++..++....... .|.-.++..+- ..+.-.|+.+.|.++--.+.
T Consensus 133 ~i~A~~~~~~~~-----~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 133 LIEAEEKLKSKQ-----AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHHHHHhhhhh-----hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 555555554111 00 01112222222222221 13334443332 23345667777766655555
Q ss_pred HhCCCCchhHHHHHHH--HhHhcCCHHHHHHHHccCCCCCccc---------------HHHHHHHHHhCCCchHHHHHHH
Q 007329 427 RTGLISYIIIANTLID--MYSKCKCIDKALEVFHQIPDKNVIS---------------WTSIILGLRLNNRSFEALIFFR 489 (608)
Q Consensus 427 ~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~ 489 (608)
+.. ..+. +..+++ ++.-.++.+.|...|++..+-++.. |..-..-..+.|++.+|.+.|.
T Consensus 197 kld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 197 KLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred hcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 433 1111 122222 2233566777777777666433221 1222334567888888888888
Q ss_pred HhH----hCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 490 KMM----LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 490 ~m~----~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.+ ....|+...|.....+..+.|+.++|+.--+++.+.+.. -...|..-..++...++|++|.+-++++
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 345566667777777888888888888888777664321 1112222234455667888888888776
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=46.45 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=35.6
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNI 569 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~ 569 (608)
..|++++|.++++.+.+..+. +...+-.++.+|.+.|++++|.++++++ .|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 456666777777766666555 5555556667777777777777777766 455444433
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.002 Score=62.61 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=62.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCC-C-----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMES-K-----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACA 410 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 410 (608)
..+++......+++++..++.+... | -..|..++++.|...|..++++.+++.=...|+-||..|++.||..+.
T Consensus 70 d~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl 149 (429)
T PF10037_consen 70 DIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFL 149 (429)
T ss_pred HHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHh
Confidence 3344444444444445444444432 1 122344666666666666666666666666666677777777777777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc
Q 007329 411 CLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC 447 (608)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 447 (608)
+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 150 ~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 150 KKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777766666666555444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0039 Score=58.21 Aligned_cols=129 Identities=15% Similarity=0.173 Sum_probs=93.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITM 241 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 241 (608)
.+|-.+++..-+.+..+.|..+|.+..+.+.+..+.....+.+.. ...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367788888888888999999999988654333444443444433 3356777799999988876 46677888888999
Q ss_pred HHhcCCHHHHHHHHccCCCC------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007329 242 YVKCGDLVRARLVFDGMPKR------DRISWNAMISGYFENGEYMKGLMLFIMMREV 292 (608)
Q Consensus 242 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 292 (608)
+.+.|+.+.|..+|++.... ....|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987763 2347888888888888888888888888763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0046 Score=52.94 Aligned_cols=62 Identities=19% Similarity=0.049 Sum_probs=33.4
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCC-CC--CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNL-KP--NSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
.|..+...+...|++++|+..|++..... .+ ...++..+...+...|++++|...++.+.+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445555556666666666666665111 11 1234555556666666666666666665544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0034 Score=53.77 Aligned_cols=97 Identities=13% Similarity=0.195 Sum_probs=73.1
Q ss_pred HHHHhhC--CCCChhhHHHHHHHHHc-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC------------
Q 007329 353 EKVFSRM--ESKDVVSWTTMISCYEG-----SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG------------ 413 (608)
Q Consensus 353 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------------ 413 (608)
...|+.. ...+-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+-+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 34666677777776654 3566666777788888888888889998888776522
Q ss_pred ----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC
Q 007329 414 ----NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKC 449 (608)
Q Consensus 414 ----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 449 (608)
+-+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456789999999999999999999999999876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0074 Score=51.64 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLT 572 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~ 572 (608)
...+..+...+...|++++|...++++......+. ..++..+..+|...|++++|.+.++++ +....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 44567777788889999999999999987654432 347888999999999999999999998 334566777776
Q ss_pred HHH-------hcCCHHHHHHHHHHHHH-----cCCCCCch
Q 007329 573 GYA-------ERGQGALAEEFFRKMID-----SKGNWRKL 600 (608)
Q Consensus 573 ~~~-------~~g~~~~A~~~~~~m~~-----~g~~p~~~ 600 (608)
.+. ..|+++.|...+++... .+..|+..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 766 78888766555544321 13477554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=46.05 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=43.0
Q ss_pred ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 007329 534 GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERG-QGALAEEFFRKMIDS 593 (608)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 593 (608)
+..|..++..+...|++++|+..|+++ +.+...|..+..+|...| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 445666777777777777777777776 335667777777777777 678888887777663
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.02 Score=58.25 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=37.2
Q ss_pred CccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 533 DGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++..|..+.-.+...|++++|...++++ .|+...|..+...+...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3345555555555556666666666666 555566666666666666666666666666553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0037 Score=53.60 Aligned_cols=89 Identities=10% Similarity=0.100 Sum_probs=60.9
Q ss_pred CCCHhHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhc----------------CChhhHH
Q 007329 260 KRDRISWNAMISGYFE-----NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELV----------------GDEKLGR 318 (608)
Q Consensus 260 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 318 (608)
.++-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3455555555555544 355666666677777778888888888887765432 1356677
Q ss_pred HHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 007329 319 EVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348 (608)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (608)
+++++|...|+-||..++..+++.+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888887776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.19 Score=45.77 Aligned_cols=58 Identities=12% Similarity=-0.005 Sum_probs=34.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc-hH---HHHHHHhcCCCChhhHHHHHHHHHHhC
Q 007329 167 LIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY-TF---PCVLRTCGGVPDLKRGKEVHVHVIRFG 227 (608)
Q Consensus 167 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~---~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (608)
....+.+.|++++|.+.|+.+.... |+.. .. -.+..++.+.+++++|...++..++.-
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y---P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY---PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444556677777777777776543 3322 11 234455666777777777777766654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.011 Score=54.27 Aligned_cols=97 Identities=10% Similarity=-0.067 Sum_probs=62.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC----HHHHHHHHH
Q 007329 502 LVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN---ERD----VSAWNILLT 572 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~----~~~~~~l~~ 572 (608)
|...+....+.|++++|...|+.+++.-+... +..+-.++..|...|++++|...|+++ -|+ ...+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445667777777776666544321 234556777777788888888877777 232 445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 573 GYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 573 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+...|+++.|..+|+++++. .|+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 777788888888888888775 55554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.076 Score=44.24 Aligned_cols=127 Identities=12% Similarity=0.002 Sum_probs=74.1
Q ss_pred cchhHHhHHHHHhhhcCChhhHHHHHcccCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 128 LSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD----RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
|++...-.|...+...|+..+|...|++... .|....-.+.++....+++..|...++++.+...-.-+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4555555566666667777777777666532 355555555666666677777777777766543222233344455
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHc
Q 007329 204 LRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFD 256 (608)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 256 (608)
.+.+...|...+|+.-|+..++.- |+..........+.+.|+.++|..-+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 666777777777777777777653 333333333444566676666554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.026 Score=44.39 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=59.1
Q ss_pred HHHHHHhCCCchHHHHHHHHhH-hCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhH
Q 007329 471 IILGLRLNNRSFEALIFFRKMM-LNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYV 545 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~-~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 545 (608)
+..++-..|+.++|+.+|++.. .|.... ...+..+.+++...|++++|..+++......+.. +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3455666777777777777777 444333 3355566667777777777777777766543221 1112222334566
Q ss_pred hcCCHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 007329 546 RCGRMKPAWNQFNSN-ERDVSAWNILLTGY 574 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~ 574 (608)
..|+.++|++.+-.. .++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766544 33333444444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.026 Score=51.21 Aligned_cols=99 Identities=14% Similarity=0.052 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC---CHHHHHHHHHhc----CCCHHH
Q 007329 494 NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG---RMKPAWNQFNSN----ERDVSA 566 (608)
Q Consensus 494 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~----~~~~~~ 566 (608)
..+-|...|..|..+|...|+++.|..-|..+.+...+ ++..+..+..++.... ...++.++|+++ +-|+.+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 34445566666666666666666666666666655433 4455555555443322 244566666666 224445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 567 WNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 567 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..-|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666666654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.12 Score=47.04 Aligned_cols=75 Identities=7% Similarity=-0.063 Sum_probs=47.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCChhh--HHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHH
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDEDA--LVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSM 139 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (608)
.....+...|++++|++.|+.+....+...... ...+..++.+.+++++|...++..++..+.....-+...+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 445566778888899888888877443221111 133445777788888888888888877665443333333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.18 Score=50.39 Aligned_cols=86 Identities=10% Similarity=0.131 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CChh-----------h
Q 007329 300 TLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVV-----------S 366 (608)
Q Consensus 300 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-----------~ 366 (608)
+...+...+.+...+..|-++|..|-.. ..+++.....++|.+|..+-++..+ +|+. -
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3333333344445555566666554322 3455666666677777766666655 2221 1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCC
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAEG 394 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g 394 (608)
|...-.+|.+.|+-.+|..+++++....
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 2222346777777788888887776543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.076 Score=44.26 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhc
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLN-LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRC 547 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 547 (608)
.|..++.+.|+..+|...|++...| +.-|......+.++....+++..|...++.+.+..+.- ++...-.+...|...
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~ 173 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQ 173 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhc
Confidence 3444555555555555555555533 33344455555555555555555555555555443210 112222344555555
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++.+|...|+-.
T Consensus 174 g~~a~Aesafe~a 186 (251)
T COG4700 174 GKYADAESAFEVA 186 (251)
T ss_pred CCchhHHHHHHHH
Confidence 5555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0042 Score=43.09 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=31.8
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
...+.+.|++++|++.|++.+...+-+...+..+..++...|++++|...++++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666666666666333334455555556666666666666666665554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.046 Score=55.66 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+...|..+.-.....|++++|...++++.+.+ |+...|..++..|...|+.++|.+.++++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444555555555555555544 24445555555555556666665555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0032 Score=44.35 Aligned_cols=61 Identities=18% Similarity=0.136 Sum_probs=28.9
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG-ALMCGKEIHAHALR 527 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 527 (608)
.|..+...+...|++++|+..|++.+.-.+.+...|..+..++...| ++++|++.++++++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34444445555555555555555554222223444444444555554 45555555554444
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0018 Score=45.49 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 545 VRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
...|++++|.+.|+++ +.+...+..++.+|.+.|++++|.++++++... .|++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCH
Confidence 4689999999999998 447888899999999999999999999999986 7764
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.003 Score=45.80 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=35.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc-------CC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN-------ER---D-VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+++.+..+|...|++++|++.++++ .+ + ..++..+...|...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455556666666666666666554 11 1 34667777778888888888888777654
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.025 Score=44.56 Aligned_cols=106 Identities=16% Similarity=0.053 Sum_probs=63.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhcCCCCC--hhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCc--chhHHhHHHHHhh
Q 007329 66 RLNELCLNGSLEQALKYLDSMQELNICVD--EDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL--SVRLGNAFLSMFV 141 (608)
Q Consensus 66 ll~~~~~~~~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 141 (608)
.-.++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++......+.. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456667888888888888888776543 2344555567777888888888887777654331 1122222334455
Q ss_pred hcCChhhHHHHHcccCCCCcchHHHHHHHH
Q 007329 142 KFGDLGHAWYVFGKMCDRDLFSWNVLIGGY 171 (608)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 171 (608)
..|+.++|++.+-...-++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777766544333333444444433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.017 Score=52.30 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=61.2
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHhCCCCCccHHHHH
Q 007329 464 NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARI---GALMCGKEIHAHALRIGVAFDGFLPNAL 540 (608)
Q Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l 540 (608)
|...|-.|...|...|+.+.|..-|.+..+-.++|...+..+..++... ..-.++.++++++.+.++. |+.....|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHHH
Confidence 4556666667777777777777777766644445555555555555433 2345667777777766554 55666666
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
...+...|++.+|...|+.|
T Consensus 234 A~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred HHHHHHcccHHHHHHHHHHH
Confidence 66777777777777777777
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.55 Score=45.24 Aligned_cols=204 Identities=10% Similarity=-0.009 Sum_probs=114.8
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHH-cc---CChHHHHHHHHHHHHhCCC
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITI-------ASVLSACA-CL---GNLDLGIKLHQLAMRTGLI 431 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~-------~~ll~~~~-~~---~~~~~a~~~~~~~~~~~~~ 431 (608)
-+.++..++...++.++...|.+.+.-+... .|+...- ..+-+..+ .. .+...-..+|+.....++.
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 3456777888888888888888887766654 2332211 11222222 11 1223334445554444322
Q ss_pred CchhHHHHHHH---HhHhcCC-HHHHHHHHccCCC---CCcccHHHHH----HHHHhCCCchHHHHHHHHhH----hCCC
Q 007329 432 SYIIIANTLID---MYSKCKC-IDKALEVFHQIPD---KNVISWTSII----LGLRLNNRSFEALIFFRKMM----LNLK 496 (608)
Q Consensus 432 ~~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~~~~~~~A~~~~~~m~----~~~~ 496 (608)
- .....-|+. -+-+.|. -++|+++++.+.+ .|...-|.+. .+|.+.=..+.--++++-+. .|++
T Consensus 375 r-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 375 R-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred H-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 1 111122222 2334444 7788888887663 3433333221 23332211122222332222 4666
Q ss_pred CC----HHHHHHHHHH--HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHH
Q 007329 497 PN----SVTLVSILSA--CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNIL 570 (608)
Q Consensus 497 p~----~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l 570 (608)
|- ...-|.|..| +...|++.++.-.-..+.+ +.|.+.+|..++-++.-..++++|++++.+++|+..+|++=
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dsk 531 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSK 531 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHH
Confidence 53 3334444443 4567888888766665555 66789999999999999999999999999999988888754
Q ss_pred H
Q 007329 571 L 571 (608)
Q Consensus 571 ~ 571 (608)
+
T Consensus 532 v 532 (549)
T PF07079_consen 532 V 532 (549)
T ss_pred H
Confidence 3
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0055 Score=43.72 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=34.5
Q ss_pred HHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 542 DMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..|.+.+++++|.++++.+ +.++..|......+...|++++|.+.|++..+. .|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcH
Confidence 3455666666666666665 334555666666666666666666666666654 44444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0021 Score=59.96 Aligned_cols=130 Identities=12% Similarity=0.035 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhH---h--CC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHHH----HhCCC-CCcc
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMM---L--NL-KPNSVTLVSILSACARIGALMCGKEIHAHAL----RIGVA-FDGF 535 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~---~--~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-p~~~ 535 (608)
.|..|...|.-.|+++.|+..-+.-+ + |- ......+..+..+++-.|+++.|.+.++... +.|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555667777766655433 1 11 1223456666677777777777777666443 22221 1122
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN----------ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGN 596 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 596 (608)
..-+|.+.|.-..++++|++++.+- --....+-+|..+|...|..++|+...+.-++...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3335666666666777777766543 113456677777777777777777777666654333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.072 Score=46.99 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHH----
Q 007329 365 VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTL---- 440 (608)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 440 (608)
...+.++..+...|.+.-....+++..+....-++.....|.+.-.+.|+.+.|...++...+..-+.+...++.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456677777788888888899999988776677888888888888999999999999877764334443333332
Q ss_pred -HHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 441 -IDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 441 -i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
...|.-++++.+|...+.++.. .|+...|.-.-++.-.|+..+|++.++.|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345556777777777777664 344455555555556677777777777776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.89 Score=46.24 Aligned_cols=41 Identities=17% Similarity=0.053 Sum_probs=21.9
Q ss_pred ChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 007329 145 DLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRM 187 (608)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 187 (608)
.+++|.+..+.- |.+..|..|.......-.++.|..-|-+.
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 344555554443 44456666666555555555555555444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.12 Score=45.71 Aligned_cols=138 Identities=15% Similarity=0.093 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHH---
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLI--- 340 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 340 (608)
...+.++..+.-.|.+.-..+++++..+...+.+......+.+...+.|+.+.|...++...+..-..+...++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777888888889999999887767777888888888889999999999999887664445555544443
Q ss_pred --HHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007329 341 --KMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA 403 (608)
Q Consensus 341 --~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 403 (608)
..|.-.+++..|...++++.. .|+..-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 345556788888888888776 34555555555566678888999999988876 34444333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.011 Score=55.42 Aligned_cols=128 Identities=15% Similarity=0.087 Sum_probs=86.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHH----HhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCC-------CCC--cc
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAM----RTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIP-------DKN--VI 466 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~--~~ 466 (608)
.|..|.+.|.-.|+++.|+...+.-. +.|-. .....+.-|.+++.-.|+++.|.+.++.-. +.. ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 46666666777888998887766322 23322 123455667777888889999888887543 222 23
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhH---h---CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMM---L---NLKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~---~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
+..+|...|.-..++++|+.++.+-+ + ...-....+.+|..+|...|..++|+.+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45567777777788888988887765 1 12334557888899999999999998877765543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.015 Score=41.49 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=29.4
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 508 ACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 508 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+.+.+++++|.++++.+.+.++. ++..+.....+|.+.|++++|.+.|+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 445555555555555555555444 4555555555566666666666655555
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.2 Score=44.34 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=45.7
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCC--ChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcch
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICV--DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSV 130 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (608)
.......+...|++.+|+..|+.+....+.. -......+..++.+.|+++.|...++..++.-|....
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3445567788999999999999997753321 2334555667888889999999999988887765443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.95 Score=47.16 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=29.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAH 524 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (608)
++..+.+..+.+.+..+.+..- +-++..|..++..+++.+..+...+...+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g---~~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG---KEDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC---ccChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 4555666666666666666553 11566677777777776655544444333
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.3 Score=48.10 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=58.9
Q ss_pred HHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 442 DMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
-+|.++|+.++|++.+ ...|++++|+.+..++..+..--..+-..|..-+..++++-+|-++
T Consensus 960 l~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 960 LMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 3466677777776644 4467777777777766422111112224566677777888887777
Q ss_pred HHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCC
Q 007329 522 HAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNER 562 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 562 (608)
..+.... ..-.+..|++...|++|..+....+.
T Consensus 1022 l~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1022 LLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 7665431 12345667788888888887776643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.092 Score=43.33 Aligned_cols=88 Identities=15% Similarity=-0.011 Sum_probs=63.4
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHH
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (608)
...+...|++++|..+|+-+..--+-|..-+..|..++-..+++++|...+..+...+.. |+..+-....+|...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHH
Confidence 344556778888888887776222334445566666667778889999888877766553 5555666788888999999
Q ss_pred HHHHHHHhc
Q 007329 552 PAWNQFNSN 560 (608)
Q Consensus 552 ~A~~~~~~~ 560 (608)
.|+..|+.+
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 999988877
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.29 Score=46.83 Aligned_cols=29 Identities=17% Similarity=-0.036 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..+.+++.++.-.|+++.|.+..++|.+.
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34556777777777777777777777764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.033 Score=45.88 Aligned_cols=88 Identities=9% Similarity=-0.049 Sum_probs=75.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCC
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQ 579 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~ 579 (608)
....-+...|++++|..+|+-+.-.++. +..-+..|..++-..|++++|...+..+ ..|+..+-.....|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3445567889999999999999887766 6677888999999999999999999887 5577778888899999999
Q ss_pred HHHHHHHHHHHHH
Q 007329 580 GALAEEFFRKMID 592 (608)
Q Consensus 580 ~~~A~~~~~~m~~ 592 (608)
.+.|+..|+..++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998887
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.086 Score=48.38 Aligned_cols=93 Identities=9% Similarity=-0.058 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHH
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPN---SVTLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLD 542 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~ 542 (608)
|...+..+.+.|++++|+..|+.++...+-+ ...+..+..++...|++++|...|+.+.+.-+.- ....+-.++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333455677777777777777333222 2456667777777788888888887777543321 1233334566
Q ss_pred HhHhcCCHHHHHHHHHhc
Q 007329 543 MYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~ 560 (608)
+|...|+.++|.++++++
T Consensus 226 ~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 677778888888877766
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.3 Score=41.89 Aligned_cols=255 Identities=15% Similarity=0.031 Sum_probs=141.9
Q ss_pred ChhHHHHHHHHH--hhcCChhhHHHHHHHHHHhCCCCCccc--chHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHH
Q 007329 297 DFMTLSSVISAS--ELVGDEKLGREVHGYVIKMGFSDDVSV--CNPLIKMYLSFGNREEGEKVFSRMES--K-DVVSWTT 369 (608)
Q Consensus 297 ~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ 369 (608)
|......++.+- .-.|+.+.|.+-|+.|... |.... ...|.-.--+.|..+.|..+-++... | -...+..
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHH
Confidence 444444444332 2346666666666665432 11111 11222223345666666666555543 2 2345667
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHc---cCChHHHHHHHHHHHHhCCCCchhH-HHHHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEG-SMPDEI--TIASVLSACAC---LGNLDLGIKLHQLAMRTGLISYIII-ANTLID 442 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~ 442 (608)
.+...|..|+|+.|+++++.-.... +.++.. .-..|+.+-.. ..+...|...-.+..+ +.|+..- -..-..
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAr 271 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAAR 271 (531)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHH
Confidence 7777788888888888877665543 333432 22223322211 1234444444333333 3444322 223346
Q ss_pred HhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH--hCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM--LNLKPN-SVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~-~~~~~~ll~~~~~~~~~~~a~ 519 (608)
++.+.|+..++-.+++.+-+..++.--.. .|....--+.++.-+++.. ..++|| ......+..+-...|++..|.
T Consensus 272 alf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~AR 349 (531)
T COG3898 272 ALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAAR 349 (531)
T ss_pred HHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHH
Confidence 67888888888888887764333322222 3333344445666666665 456664 556677778888888888887
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHhHh-cCCHHHHHHHHHhc
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDMYVR-CGRMKPAWNQFNSN 560 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 560 (608)
.--+.+.+ ..|....|..|.+.-.. .|+-.++...+.+.
T Consensus 350 a~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 350 AKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 76666554 35667777777777654 49999998888776
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.025 Score=40.89 Aligned_cols=60 Identities=23% Similarity=0.226 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhH---hCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMM---LNLKPN----SVTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
+|+.+...|...|++++|+..|++.. +...++ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555554 112211 2244555555555555555555555543
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.1 Score=39.62 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=27.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC-CcchHHHHHHHhcCCCChhhHHHHHHHHHHh
Q 007329 169 GGYAKAGFFDEALSLYQRMFWVGGVKP-DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF 226 (608)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 226 (608)
..+...|++.+|.+.|+.+....+-.| -....-.++.++.+.|+++.|...++..++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666666666654421111 1112334445555556666666666665554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.7 Score=43.99 Aligned_cols=117 Identities=16% Similarity=0.096 Sum_probs=64.1
Q ss_pred hHHHHHhhhcCChhhHHHHHcccCCCCcchHHH----HHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcC
Q 007329 134 NAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNV----LIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGG 209 (608)
Q Consensus 134 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 209 (608)
..-++.+.+...++-|..+-+.-.- |...... -.+-+.+.|++++|...|-+-... +.|. .+|.-+..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHHHHhcC
Confidence 3445566666666666666554322 2222222 223344567777777666554321 2332 34555555
Q ss_pred CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 210 VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 210 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
......--.+++.+.+.|+. +...-..|+++|.+.++.++-.++.+...
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55555566666666666643 33344566777777777776666665554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.28 Score=48.79 Aligned_cols=161 Identities=13% Similarity=0.094 Sum_probs=108.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007329 169 GGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL 248 (608)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 248 (608)
....-.|+++++.++...-.-...++ ....+.+++-+-+.|..+.|+++...- . .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCH
Confidence 34456788888877775211111022 445778888888999999988875432 2 234556789999
Q ss_pred HHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhC
Q 007329 249 VRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMG 328 (608)
Q Consensus 249 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 328 (608)
+.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..|+-.|...|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999988876 677999999999999999999999987654 6667777788888888888887777665
Q ss_pred CCCCcccchHHHHHHHhcCChHHHHHHHhhCC
Q 007329 329 FSDDVSVCNPLIKMYLSFGNREEGEKVFSRME 360 (608)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (608)
-+|....++...|+.++..+++.+-.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 25666667777788888877766544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.8 Score=41.03 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=11.0
Q ss_pred HHHhhcCChhhHHHHHHHHHHh
Q 007329 306 SASELVGDEKLGREVHGYVIKM 327 (608)
Q Consensus 306 ~~~~~~~~~~~a~~~~~~~~~~ 327 (608)
.++.+.|+..++-.+++.+-+.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhc
Confidence 3444555555555555555444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.06 Score=44.75 Aligned_cols=70 Identities=11% Similarity=-0.003 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HhCCCCCccHH
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHAL-----RIGVAFDGFLP 537 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~ 537 (608)
...++..+...|++++|+++.+.+....+-|...|..++.++...|+..+|.++|+++. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456667778888888888888875556677788888888888888888888887664 45777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.41 Score=47.67 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=110.0
Q ss_pred HHHHHHhCCChHHHHHHHH--HHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhc
Q 007329 66 RLNELCLNGSLEQALKYLD--SMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKF 143 (608)
Q Consensus 66 ll~~~~~~~~~~~A~~~~~--~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (608)
..+...-+|+++++.+..+ ++.. ..+......+++.+.+.|-.+.|+++... . ..-.....++
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~l 331 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQL 331 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHC
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhc
Confidence 3566777999999887775 2221 12356688899999999999999887322 2 2345566789
Q ss_pred CChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHH
Q 007329 144 GDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHV 223 (608)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 223 (608)
|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -|..++-.|...|+.+...++.+..
T Consensus 332 g~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 332 GNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp T-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHH
Confidence 99999999998875 66699999999999999999999999864 3556677777888888888888777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 007329 224 IRFGYEADVDVVNALITMYVKCGDLVRARLVFDGM 258 (608)
Q Consensus 224 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 258 (608)
...| -++....++.-.|+.++..+++.+-
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7766 2455555666678888777766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.085 Score=51.16 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=54.2
Q ss_pred CcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCCh----hhHHHHHHHhhccCCchhhhHHHHHHHHh
Q 007329 60 TKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDE----DALVNLVRLCEWKRGYDEGLYLHSVVSKT 124 (608)
Q Consensus 60 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 124 (608)
...++.+-.+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|...++..++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3348889999999999999999999998854 553 35888999999999999999999998886
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.13 Score=49.86 Aligned_cols=63 Identities=21% Similarity=0.121 Sum_probs=40.3
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNS----VTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
...|+.+..+|.+.|++++|+..|++.+ .+.|+. .+|..+..+|...|+.++|++.++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL-eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL-ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666667777777777777777666 344442 24666666666677777777776666654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.67 Score=44.45 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=48.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC-C------hhhHHHHHHHHHc---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007329 338 PLIKMYLSFGNREEGEKVFSRMESK-D------VVSWTTMISCYEG---SVLPDKAVETYQMMEAEGSMPDEITIASVLS 407 (608)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~~-~------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 407 (608)
.++-+|....+++...++.+.+... + ...-....-++.+ .|+.++|++++..+....-.+++.||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677777888888888777762 1 1111223335556 7888888888888666666778888877776
Q ss_pred HHH
Q 007329 408 ACA 410 (608)
Q Consensus 408 ~~~ 410 (608)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.9 Score=42.39 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=99.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc-----hHHHHHHHhcC----CCChhhHHHHHHHHHHhCCCCchhHHH
Q 007329 166 VLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY-----TFPCVLRTCGG----VPDLKRGKEVHVHVIRFGYEADVDVVN 236 (608)
Q Consensus 166 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 236 (608)
.++....-.|+-+.+++++.+..+.+++.-... .|..++..++. ..+.+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 344455556888888888887765443332222 34444444433 45677888888888876 45544443
Q ss_pred H-HHHHHHhcCCHHHHHHHHccCCCC-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH
Q 007329 237 A-LITMYVKCGDLVRARLVFDGMPKR-------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISAS 308 (608)
Q Consensus 237 ~-li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 308 (608)
. -.+.+...|++++|.+.|+..... ....+-.+.-.+.-..+|++|.+.|..+.+.. ..+..+|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 3 345566779999999999865531 23345556666778889999999999888753 22444455444433
Q ss_pred -hhcCCh-------hhHHHHHHHHHH
Q 007329 309 -ELVGDE-------KLGREVHGYVIK 326 (608)
Q Consensus 309 -~~~~~~-------~~a~~~~~~~~~ 326 (608)
...++. ++|.+++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 345666 677777766543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.09 Score=43.68 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH-----hCCCCchhH
Q 007329 164 WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR-----FGYEADVDV 234 (608)
Q Consensus 164 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 234 (608)
...++..+...|++++|.++.+.+.... +-|...|..+|.++...|+...|.++|+.+.+ .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555556666666666666666544 44555666666666666666666666665542 466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.13 Score=40.93 Aligned_cols=49 Identities=10% Similarity=-0.075 Sum_probs=28.6
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHh
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTC 207 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 207 (608)
|+.....+++.+|+..|++..|+++++...+.-+++.+..+|..|++-+
T Consensus 50 Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 50 PTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5555566666666666666666666666655544555555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.6 Score=41.06 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=73.8
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCC------CCHHHHHHHHHH
Q 007329 435 IIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLK------PNSVTLVSILSA 508 (608)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~------p~~~~~~~ll~~ 508 (608)
..|+-...+|..+|..+.|-..+++.- -..+..++++|+++|++...-+. .-...+..+-+.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 344555556666666666555554422 12234456666666666651111 112234444455
Q ss_pred HhccCcHHHHHHHHHHHH----HhCCCCCc-cHHHHHHHHhHhcCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 007329 509 CARIGALMCGKEIHAHAL----RIGVAFDG-FLPNALLDMYVRCGRMKPAWNQFNSN--------ERDVSAWNILLTGYA 575 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~----~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~l~~~~~ 575 (608)
+.+...+++|-..+.+-. +..--++. ..|-..|-.|.-..++..|...++.. ..|..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 566666666554443322 11111121 23445555666677888888887774 23556777777766
Q ss_pred hcCCHHHHHHHH
Q 007329 576 ERGQGALAEEFF 587 (608)
Q Consensus 576 ~~g~~~~A~~~~ 587 (608)
..|+.+++..++
T Consensus 239 d~gD~E~~~kvl 250 (308)
T KOG1585|consen 239 DEGDIEEIKKVL 250 (308)
T ss_pred ccCCHHHHHHHH
Confidence 456766665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.11 Score=49.22 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..++.+..++.+.+++.+|++.-.+.+.--++|.-.+-.-..++...|+++.|+..|+++++..+. |..+-+.|+.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 356667777777777777777777777555566666666677777777777777777777766554 4444445555544
Q ss_pred hcCCHHHH-HHHHHhc
Q 007329 546 RCGRMKPA-WNQFNSN 560 (608)
Q Consensus 546 ~~g~~~~A-~~~~~~~ 560 (608)
+.....+. .++|..|
T Consensus 337 k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 44443332 4555555
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.16 Score=40.47 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=31.5
Q ss_pred CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh-CCCCchhHHHHHHHHHH
Q 007329 193 VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF-GYEADVDVVNALITMYV 243 (608)
Q Consensus 193 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~ 243 (608)
..|+..+..+++.+++..|++..|.++++...+. +++.+..+|..|+.-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5566666666666666666666666666665543 55555566666655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.45 Score=46.43 Aligned_cols=139 Identities=10% Similarity=-0.012 Sum_probs=79.2
Q ss_pred CHHHHHHHHccCC---CCC---cccHHHHHHHHHh---------CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 449 CIDKALEVFHQIP---DKN---VISWTSIILGLRL---------NNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 449 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.++.++..+--+-|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3556777777766 333 2334444333321 122344556666665445556666666666666677
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD---VSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
+++.|...|+++...++. ....|-.......-+|+.++|.+.+++. .|. .......+..|+.. ..++|+.++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 777777778777776554 3444555555566677788888777775 332 22333444455544 345556554
Q ss_pred HH
Q 007329 588 RK 589 (608)
Q Consensus 588 ~~ 589 (608)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 43
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.3 Score=35.80 Aligned_cols=78 Identities=6% Similarity=-0.096 Sum_probs=51.6
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKP---NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG 548 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 548 (608)
.....+.|++++|.+.|+.+....+- .......++.++.+.+++++|...+++.++..+.-.-.-|.....+++.-.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455677788888888877733332 344566777788888888888888888888776644455555555554433
Q ss_pred C
Q 007329 549 R 549 (608)
Q Consensus 549 ~ 549 (608)
.
T Consensus 97 ~ 97 (142)
T PF13512_consen 97 Q 97 (142)
T ss_pred H
Confidence 3
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.42 Score=43.01 Aligned_cols=88 Identities=11% Similarity=-0.065 Sum_probs=54.9
Q ss_pred ccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhHhcCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHhcCCHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYVRCGRMKPAWNQFNSN-------ERDVSAWNILLTGYAERGQGA 581 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~ 581 (608)
+.|++..|.+.|...++..+.- .+..+-.|+..+...|++++|..+|..+ +.-+...--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3455666666666666543331 1223334677777777777777777666 223556666677777777777
Q ss_pred HHHHHHHHHHHcCCCCCch
Q 007329 582 LAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 582 ~A~~~~~~m~~~g~~p~~~ 600 (608)
+|...|++..+. .|+.-
T Consensus 233 ~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 233 EACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHHHHHH--CCCCH
Confidence 777777777765 56554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.5 Score=35.91 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=22.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCE 106 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 106 (608)
...++..+...+.+.....+++.+...+. .+....+.++..++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 44555555555566666666665554442 34444444444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.25 Score=44.28 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=77.8
Q ss_pred HHHHHccCC--CCCHhHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcC-----------
Q 007329 251 ARLVFDGMP--KRDRISWNAMISGYFEN-----GEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVG----------- 312 (608)
Q Consensus 251 A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 312 (608)
.++.|.... ++|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566555 55777777777776543 456666677888899999999999999988764432
Q ss_pred -----ChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC-hHHHHHHHhhCC
Q 007329 313 -----DEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN-REEGEKVFSRME 360 (608)
Q Consensus 313 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 360 (608)
+-+-+.+++++|...|+-||-.+-..|++++.+.+- ..+..++.-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 345577888888888888888888888888887765 233444444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.28 Score=43.92 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=78.8
Q ss_pred HHHHHhhCC--CCChhhHHHHHHHHHc-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 007329 352 GEKVFSRME--SKDVVSWTTMISCYEG-----SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG----------- 413 (608)
Q Consensus 352 a~~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 413 (608)
.+..|.... +.|-.+|-..+..+.. .+.++=....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 4666777777776654 3455666677788999999999999999998776533
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHH-HHHHHHccCC
Q 007329 414 -----NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCID-KALEVFHQIP 461 (608)
Q Consensus 414 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~ 461 (608)
+-+-++.++++|...|+.||..+-..|++++++.+-.- +..++.-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 33557899999999999999999999999998876543 3333333333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.1 Score=37.41 Aligned_cols=195 Identities=16% Similarity=0.080 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 365 VSWTTMISCYEGSVLPDKAVETYQMMEAE-GSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
..+......+...+++..+...+...... ........+......+...++...+...+.........+ ..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------- 130 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DL-------- 130 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-ch--------
Confidence 34444455555555555555555555432 112233344444444445555555555555544432222 11
Q ss_pred hHhcCCHHHHHHHHccCCCCCcccHHHHHH-HHHhCCCchHHHHHHHHhHhCCCC----CHHHHHHHHHHHhccCcHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPDKNVISWTSIIL-GLRLNNRSFEALIFFRKMMLNLKP----NSVTLVSILSACARIGALMCG 518 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~p----~~~~~~~ll~~~~~~~~~~~a 518 (608)
....... .+...|+++.|...+.+... ..| ....+......+...++.+.+
T Consensus 131 -----------------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 131 -----------------------AEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEA 186 (291)
T ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHH
Confidence 1111111 34444444444444444432 222 122222222223444455555
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 519 KEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
...+....+.........+..+...+...++++.|...+... .|+ ...+..+...+...|..+.+...+++...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555444322212334444455555555555555555554 222 23333333333344445555555555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.8 Score=37.09 Aligned_cols=89 Identities=11% Similarity=0.052 Sum_probs=49.1
Q ss_pred CCCChh----HHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC--hhhH
Q 007329 294 VDPDFM----TLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD--VVSW 367 (608)
Q Consensus 294 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 367 (608)
.+||-. .|.....+|...+++++|...+....+. .+.+...|. ....++.|.-+.+++.+-+ +..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455543 4555566777788888888777666532 122222221 1233455555666665521 2345
Q ss_pred HHHHHHHHcCCCchHHHHHHHHH
Q 007329 368 TTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m 390 (608)
+.-...|...|.++.|-..+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHH
Confidence 55566677777766666555554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.8 Score=38.33 Aligned_cols=155 Identities=12% Similarity=0.027 Sum_probs=74.5
Q ss_pred HHHHHHHHhHhcCCHH---HHHHHHccCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 436 IANTLIDMYSKCKCID---KALEVFHQIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
+...++.+|...+..+ +|..+++.+.. ++ +..+-.-+..+.+.++.+++.+.+.+|+..+.-....+...+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 4455666666655544 33444444431 22 334444455555567777777777777744332333344444333
Q ss_pred hc--cCcHHHHHHHHHHHHHhCCCCCcc-HHH-HHHHH-h--Hhc------CCHHHHHHHHHhc------CCCHH-----
Q 007329 510 AR--IGALMCGKEIHAHALRIGVAFDGF-LPN-ALLDM-Y--VRC------GRMKPAWNQFNSN------ERDVS----- 565 (608)
Q Consensus 510 ~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~-~l~~~-~--~~~------g~~~~A~~~~~~~------~~~~~----- 565 (608)
.. ......+...+..+....+.|... ... .++.. + .+. ++++...++++.+ +-+..
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~ 245 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAI 245 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 21 123345555555555444444332 111 11111 1 111 1144444445433 11222
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 566 ---AWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 566 ---~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
.|+. +..+.+.++++.|.++|+-..
T Consensus 246 ~~LLW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 246 HTLLWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 2333 234567889999999998544
|
It is also involved in sporulation []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.43 Score=37.35 Aligned_cols=87 Identities=14% Similarity=-0.036 Sum_probs=59.9
Q ss_pred HHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHhHhcCCH
Q 007329 474 GLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGF---LPNALLDMYVRCGRM 550 (608)
Q Consensus 474 ~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~ 550 (608)
++...|+.+.|++.|.+.+.-.+.+...||.-..++.-+|+.++|++-++++.+..-.-+.. .|..-...|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 56677888888888888775556677778888888888888888888888777653221222 222233456677888
Q ss_pred HHHHHHHHhc
Q 007329 551 KPAWNQFNSN 560 (608)
Q Consensus 551 ~~A~~~~~~~ 560 (608)
+.|..-|+..
T Consensus 132 d~AR~DFe~A 141 (175)
T KOG4555|consen 132 DAARADFEAA 141 (175)
T ss_pred HHHHHhHHHH
Confidence 8888877766
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.47 Score=45.13 Aligned_cols=94 Identities=10% Similarity=0.047 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-HHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-VSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~~~~~~l~~~~ 574 (608)
..+++.+..++.+.+++..|++..++.+..+.. +....--=..+|...|+++.|+..|+++ .|+ ..+-+.|+..-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 346778888999999999999999999988765 5554445678899999999999999999 554 44444555544
Q ss_pred HhcCCH-HHHHHHHHHHHHc
Q 007329 575 AERGQG-ALAEEFFRKMIDS 593 (608)
Q Consensus 575 ~~~g~~-~~A~~~~~~m~~~ 593 (608)
.+.... +...++|..|...
T Consensus 336 ~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 444433 4457889888754
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.2 Score=35.07 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=70.3
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccc---hHHHHHHHhcCChH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVC---NPLIKMYLSFGNRE 350 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 350 (608)
.-.|..++..++..+.... .+..-++-+|--....-+-+- +++.+..-|-..|.... ..++.+|...|..
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~y---vv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDY---VVETLDSIGKIFDISKCGNLKRVIECYAKRNKL- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHH---HHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhH---HHHHHHHHhhhcCchhhcchHHHHHHHHHhcch-
Confidence 3456666667776666543 244444444433333323222 23333333323333221 2233333333322
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 007329 351 EGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGL 430 (608)
Q Consensus 351 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 430 (608)
.......+.....+|+-++-.+++.++...+ .+++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2233445667778888888888888877533 67777888888888888888888888888887775
Q ss_pred C
Q 007329 431 I 431 (608)
Q Consensus 431 ~ 431 (608)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.2 Score=41.72 Aligned_cols=23 Identities=17% Similarity=-0.025 Sum_probs=10.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHH
Q 007329 501 TLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
++..|...|.+..++++|.-+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhH
Confidence 34444444555555555444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.99 Score=41.14 Aligned_cols=132 Identities=14% Similarity=0.020 Sum_probs=62.5
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
....|++.+|..+|+.... .+...--.++.+|...|+.+.|..++..+- +.-.........-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 4456666666666665542 223344455666666677766666666654 111111222122223333333333332
Q ss_pred HHHHHHHHhCCCC-CccHHHHHHHHhHhcCCHHHHHHHHHhc------CCCHHHHHHHHHHHHhcC
Q 007329 520 EIHAHALRIGVAF-DGFLPNALLDMYVRCGRMKPAWNQFNSN------ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 520 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~~l~~~~~~~g 578 (608)
.+-++.-. .| |...--.+...|...|+.++|.+.+-.+ -.|...-..|+..+...|
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 32222221 22 3444445566666666666666655444 223444555555555555
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.095 Score=32.69 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+|..+..+|...|++++|.++|++.++. .|++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 5666777777777777777777777775 66665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.1 Score=35.32 Aligned_cols=139 Identities=15% Similarity=0.076 Sum_probs=67.3
Q ss_pred cCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 007329 376 GSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALE 455 (608)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 455 (608)
-.|..++..+++.+.... .+..-++.+|--....-+-+-..+.++.+-+ -.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 356666666666666553 2444555555444444444444444333221 1111 12333333333
Q ss_pred HHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 456 VFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
.+-.+-. +..-....+..+.+.|+-+.-.+++.++...-.+++.....+..||.+.|+..++.+++.++-+.|++
T Consensus 78 C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3322211 11223344566777777777777777766455677777777778888888888888888777777654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.23 E-value=8.2 Score=40.33 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCCh
Q 007329 235 VNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEY 279 (608)
Q Consensus 235 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 279 (608)
....|+.+.-.|++++|-...-.|...+..-|...+..+...++.
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 344555555555555555555555555555555555555444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.5 Score=36.20 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=8.4
Q ss_pred hHhcCCHHHHHHHHHhc
Q 007329 544 YVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 544 ~~~~g~~~~A~~~~~~~ 560 (608)
+.+.|+|.+|..+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 44445555555555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.17 Score=31.55 Aligned_cols=24 Identities=25% Similarity=0.134 Sum_probs=13.2
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..+...|.+.|++++|.++++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555555
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.022 Score=47.22 Aligned_cols=86 Identities=14% Similarity=0.236 Sum_probs=59.2
Q ss_pred HHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhH
Q 007329 100 NLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDE 179 (608)
Q Consensus 100 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 179 (608)
.++..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777777888888888888777666777788888888888777887777774322 334556666777777777
Q ss_pred HHHHHHHHH
Q 007329 180 ALSLYQRMF 188 (608)
Q Consensus 180 a~~~~~~m~ 188 (608)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776643
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.87 E-value=2.4 Score=34.76 Aligned_cols=84 Identities=7% Similarity=0.015 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR 549 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (608)
.++..+.+.+.......+++.+......+....+.++..+++.+ ..+.++.++. ..+.......+..+.+.|.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444455555555555555111234445555555554432 2222222221 1122223334455555555
Q ss_pred HHHHHHHHHhc
Q 007329 550 MKPAWNQFNSN 560 (608)
Q Consensus 550 ~~~A~~~~~~~ 560 (608)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.72 E-value=3.9 Score=41.55 Aligned_cols=158 Identities=10% Similarity=0.026 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHH
Q 007329 368 TTMISCYEGSVLPDKAVETYQMMEAEG-SMPDE-----ITIASVLSACAC----LGNLDLGIKLHQLAMRTGLISYIIIA 437 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (608)
..++....-.||-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.+.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 334445555667777777766655432 22111 234444444433 45677888888888765 3444444
Q ss_pred H-HHHHHhHhcCCHHHHHHHHccCCCC-------CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 438 N-TLIDMYSKCKCIDKALEVFHQIPDK-------NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 438 ~-~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
. .-.+.+...|++++|.+.|++.... ....+--+.-++.-..++++|.+.|.++.+.-..+..+|..+..+|
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 3345567789999999999975531 2234455667788899999999999999965566666776666555
Q ss_pred -hccCcH-------HHHHHHHHHHHH
Q 007329 510 -ARIGAL-------MCGKEIHAHALR 527 (608)
Q Consensus 510 -~~~~~~-------~~a~~~~~~~~~ 527 (608)
...|+. ++|.+++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 345666 788888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.65 E-value=6.1 Score=36.81 Aligned_cols=111 Identities=8% Similarity=-0.074 Sum_probs=44.6
Q ss_pred CChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCChHHHH
Q 007329 347 GNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA----SVLSACACLGNLDLGI 419 (608)
Q Consensus 347 ~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~----~ll~~~~~~~~~~~a~ 419 (608)
|+..+|-..++++.+ .|...++-.-.++.-.|+.+.-...++++... ..||...|. .+.-++...|-+++|+
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 444444444444433 23444444444455555555444444444432 112221111 1111223344455554
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 420 KLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
+.-++..+.+ +.|.-...++...+.-.|++.++.++..+
T Consensus 196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 4444444333 22333333334444444445555444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.59 E-value=2.7 Score=35.30 Aligned_cols=135 Identities=17% Similarity=0.050 Sum_probs=79.4
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCC
Q 007329 80 LKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDR 159 (608)
Q Consensus 80 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 159 (608)
++.++.+.+.|+.|+...+..+++.+.+.|++..-.++ +..++-+|.......+-.+. +....+.++=-.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 55667777778888888888888888888876554444 55555555443333332221 2223333333333222
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2335677778888888888888888775322 222334566666666666555555554444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.78 Score=35.95 Aligned_cols=88 Identities=18% Similarity=0.089 Sum_probs=70.2
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-----CCCHH---HHHHHHHHHHhcC
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-----ERDVS---AWNILLTGYAERG 578 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~---~~~~l~~~~~~~g 578 (608)
-+....|+++.|++.|.+.+..-++ .+..||.-..+|--.|+.++|++-+++. ..... .|.--...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999987666 7888999999999999999999999887 22222 3333444578889
Q ss_pred CHHHHHHHHHHHHHcCC
Q 007329 579 QGALAEEFFRKMIDSKG 595 (608)
Q Consensus 579 ~~~~A~~~~~~m~~~g~ 595 (608)
+.+.|..-|+..-+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998877653
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.6 Score=38.30 Aligned_cols=52 Identities=13% Similarity=0.067 Sum_probs=39.9
Q ss_pred HHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch-hhhhcccC
Q 007329 556 QFNSN-ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL-MGLFRKCQ 608 (608)
Q Consensus 556 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~~ac~ 608 (608)
+|+-+ .|.+.....++..|. .+++++|.+++.++.+.|+.|.++ ..++|.|+
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K 283 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVK 283 (333)
T ss_pred hhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33334 777888888887765 468899999999999999999888 67777663
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.097 Score=30.90 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677778888888888888888754
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.08 E-value=10 Score=37.65 Aligned_cols=179 Identities=15% Similarity=0.080 Sum_probs=128.3
Q ss_pred CCCCCcchHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhH
Q 007329 56 SSIATKNPNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNA 135 (608)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (608)
.|..+...-+++..+..+.++.-...+..+|...| -+.-.|..++.+|... .-+.-..+|+.+.+..+. |+..-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34445556778888888999999999999998866 5777888999999887 667778888888888765 4444455
Q ss_pred HHHHhhhcCChhhHHHHHcccCC------CCc---chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHH
Q 007329 136 FLSMFVKFGDLGHAWYVFGKMCD------RDL---FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRT 206 (608)
Q Consensus 136 l~~~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~ 206 (608)
|...|-+ ++.+.+...|.+... .+. ..|.-|+..- ..+.+..+.+..++....|..--...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 6655554 888888888887722 111 2455554421 356777888888877766566666777777788
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMY 242 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 242 (608)
|....++.+|.+++..+.+.. ..|..+...++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 889999999999999888775 44555555555544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.94 E-value=7.4 Score=35.74 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=88.2
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC----cccHHHHHHHHHhCCCchH
Q 007329 408 ACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKN----VISWTSIILGLRLNNRSFE 483 (608)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ 483 (608)
.....|++..|..+|+...... +-+...--.+..+|...|+.+.|..++..++... ......-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456778888888888777654 3335555677888888899999998888887321 1122223444555555554
Q ss_pred HHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh--CCCCCccHHHHHHHHhHhcCCHH
Q 007329 484 ALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI--GVAFDGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 484 A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~ 551 (608)
...+-++.- .-+-|...-..+...+...|+.+.|.+.+=.+.+. |.. |...-..|++.+..-|.-+
T Consensus 222 ~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 222 IQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 444444443 33346667777888888889999888766655433 333 5555566666666555433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.67 Score=41.79 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=67.1
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCC--C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-cchHHHHH
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCD--R----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPD-VYTFPCVL 204 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll 204 (608)
.|+.-+..+ +.|++..|...|....+ | ...++-.|...+...|++++|..+|..+.+..+-.|- +..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 577666544 66778888888887744 2 2345677888888888888888888888875422222 25566666
Q ss_pred HHhcCCCChhhHHHHHHHHHHh
Q 007329 205 RTCGGVPDLKRGKEVHVHVIRF 226 (608)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~~~~~ 226 (608)
.+..+.|+.++|..+|+++++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777788888888888887776
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.68 E-value=7.3 Score=35.03 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=90.7
Q ss_pred hhHHhHHHHHhhhcCChhhHHHHHcccCC--C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 130 VRLGNAFLSMFVKFGDLGHAWYVFGKMCD--R----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
...|+.-+. -.+.|++++|.+.|+.+.. | ...+--.++-++.+.++++.|+..+++..+..+-.||. .|..-
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Y 112 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYY 112 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHH
Confidence 344444433 3366888888888887733 2 12344456667778888888888888877765333432 33333
Q ss_pred HHHhcC-------CCChhhHHHHHHH---HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHH
Q 007329 204 LRTCGG-------VPDLKRGKEVHVH---VIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGY 273 (608)
Q Consensus 204 l~~~~~-------~~~~~~a~~~~~~---~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 273 (608)
|.+++. .+|...+.+-+.. ++.. -||. .=...|..-...+...=...=-.+.+-|
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333331 1233333333322 2222 1110 0011111111110000000011245667
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCh---hHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDF---MTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|...-..+..
T Consensus 178 ~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 178 LKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888888888888776 22222 3345556677777777777766555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.45 Score=27.35 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
..|..+...+...|++++|++.|++.++. .|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence 35777888888888888888888888874 665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.43 E-value=3.1 Score=33.83 Aligned_cols=48 Identities=6% Similarity=-0.197 Sum_probs=24.3
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 512 IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.++++++..++..+.-..++ ....-..-+..+...|+|++|..+|+++
T Consensus 23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 55566666666655544333 1111111233455666666666666666
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.43 E-value=9.3 Score=35.64 Aligned_cols=111 Identities=14% Similarity=-0.012 Sum_probs=46.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCCHHHH
Q 007329 175 GFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF---GYEADVDVVNALITMYVKCGDLVRA 251 (608)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A 251 (608)
|+..+|...++++.+. .+-|...++..-.+|.-.|+.+.-+..+++++.. +++-...+...+.-++..+|-+++|
T Consensus 117 g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444444444444433 2344444444444444444444444444443322 1111112222223333445555555
Q ss_pred HHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHH
Q 007329 252 RLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFI 287 (608)
Q Consensus 252 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~ 287 (608)
++.-++..+- |...-.++...+--.|++.++.++..
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5555444332 33344444444555555555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.43 E-value=1.4 Score=41.15 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=49.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCC-----CCCccHHHHHHHHhHhcCCHHHHHHHHHhc-------C-CC------
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGV-----AFDGFLPNALLDMYVRCGRMKPAWNQFNSN-------E-RD------ 563 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~------ 563 (608)
.++..++...+.++++++.|+.+.+..- .....++-.|...|.+..|+++|.-+..++ . .|
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3455566666677777777776654321 122345666777777777777665554443 1 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 564 VSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 564 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
..+...+.-++...|....|.+..++..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 1233344555666666666666665543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.14 Score=29.69 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=10.3
Q ss_pred CccHHHHHHHHhHhcCCHHHH
Q 007329 533 DGFLPNALLDMYVRCGRMKPA 553 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A 553 (608)
+...|..|...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444455555555555444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.31 E-value=3.8 Score=33.20 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=60.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCC--ChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICV--DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMF 140 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (608)
+..-.....+.|++++|.+.|+.+..+-+.. ...+-..++.++.+.+++++|...++..++..+.....-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 4455667788999999999999998753322 34556677889999999999999999999988765555555555555
Q ss_pred hhc
Q 007329 141 VKF 143 (608)
Q Consensus 141 ~~~ 143 (608)
+.-
T Consensus 93 ~~~ 95 (142)
T PF13512_consen 93 SYY 95 (142)
T ss_pred HHH
Confidence 443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.46 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
.+|..+...|...|++++|++.|++.++. .|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46788888888889999999998888874 654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.5 Score=36.46 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=25.4
Q ss_pred hhcCChhhHHHHHcccCCCCcchHHHHHH-----HHHhcCChhHHHHHHHHHHh
Q 007329 141 VKFGDLGHAWYVFGKMCDRDLFSWNVLIG-----GYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 141 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~ 189 (608)
++.+..++|+..|..+.+.+-..|-.|.. ...+.|+...|...|+++-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 34455566666666555544444443322 23445566666666665544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.97 E-value=2.6 Score=39.61 Aligned_cols=76 Identities=12% Similarity=0.002 Sum_probs=44.6
Q ss_pred hHHHHHHHHhH-hCCCCC-HH-HHHHHHHHHhccCc--HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 482 FEALIFFRKMM-LNLKPN-SV-TLVSILSACARIGA--LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 482 ~~A~~~~~~m~-~~~~p~-~~-~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
+.+..+|+.+. .|+..+ .. ....++..+..... ..++.++++.+.+.|+++....|..++-.-.-.+..++..+-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~ 239 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEE 239 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHH
Confidence 44666777777 466553 32 33333333332222 457888899999999999888888765544333433243333
Q ss_pred H
Q 007329 557 F 557 (608)
Q Consensus 557 ~ 557 (608)
+
T Consensus 240 i 240 (297)
T PF13170_consen 240 I 240 (297)
T ss_pred H
Confidence 3
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.66 E-value=20 Score=37.91 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=36.0
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCC
Q 007329 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVP 211 (608)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 211 (608)
|....-.+|-.|.+.|++++|.++..+.... .......+...+..+....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCC
Confidence 3444556788889999999999999666543 4666778888888887753
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.60 E-value=16 Score=36.43 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=34.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCC--CHHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLNLKP--NSVTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
.+..++.+.|+.++|++.+++|.+..++ +......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3555566667777777777776633333 23355566667777777777776666654
|
The molecular function of this protein is uncertain. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.56 E-value=17 Score=36.90 Aligned_cols=127 Identities=9% Similarity=0.103 Sum_probs=56.1
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCC--CCcch-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCD--RDLFS-WNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG 208 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 208 (608)
.++.+|.---...+.+.+..+++.+.. |...- |-.....=.+.|..+.+.++|++-... ++-+...|...+..++
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHh
Confidence 344444433333444555555555532 33222 222233334556666666666666532 4444444444443332
Q ss_pred -CCCChhhHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 007329 209 -GVPDLKRGKEVHVHVIRF-GYE-ADVDVVNALITMYVKCGDLVRARLVFDGMPK 260 (608)
Q Consensus 209 -~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 260 (608)
..|+.+.....|+..+.. |.. .....|...|..-..++++.....+++++.+
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 334555555555554443 211 1223334444444444444444444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.32 E-value=9 Score=36.03 Aligned_cols=50 Identities=12% Similarity=0.080 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCCCChhhHHHHHHHhhc--c----CCchhhhHHHHHHHHhcC
Q 007329 77 EQALKYLDSMQELNICVDEDALVNLVRLCEW--K----RGYDEGLYLHSVVSKTMS 126 (608)
Q Consensus 77 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~ 126 (608)
++.+.+++.|.+.|+.-+..+|.+..-.... . .....+..+++.|.+..+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 3445566777777777666666554333322 1 123456666666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.23 E-value=4.3 Score=39.94 Aligned_cols=145 Identities=11% Similarity=0.061 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHHH-HhCCCCc-hhHHHHHHHHhHh---------cCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCC
Q 007329 414 NLDLGIKLHQLAM-RTGLISY-IIIANTLIDMYSK---------CKCIDKALEVFHQIPD---KNVISWTSIILGLRLNN 479 (608)
Q Consensus 414 ~~~~a~~~~~~~~-~~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 479 (608)
..+.|..+|.+.. ...+.|+ ...|..+..++.. .....+|.++-++..+ .|......+..++.-.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567788888777 2333444 3334433333221 2334456666655543 45566666777777788
Q ss_pred CchHHHHHHHHhHhCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHhHhcCCHHHHHHHH
Q 007329 480 RSFEALIFFRKMMLNLKPN-SVTLVSILSACARIGALMCGKEIHAHALRIGVAFD-GFLPNALLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 557 (608)
+++.|...|++.. .+.|| ..+|......+.-.|+.++|.+.+++..+..+.-- ..+....++.|+. ..++.|..++
T Consensus 353 ~~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence 8999999999998 45554 55677777777889999999999999877654322 2223334456664 4567777766
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
-+-
T Consensus 431 ~~~ 433 (458)
T PRK11906 431 YKE 433 (458)
T ss_pred hhc
Confidence 543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.05 E-value=8 Score=40.87 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=35.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCC--CCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc---c
Q 007329 339 LIKMYLSFGNREEGEKVFSRME--SKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEG-SMPDEITIASVLSACAC---L 412 (608)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~---~ 412 (608)
....+.-.|+++.|.+++-+.. ..|.+.+-+.+.-|.-.+-.+... ..+.... -.|...-+..||..|.+ .
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 4456677788888888887722 234444443333221111111111 2222111 01112456777777765 4
Q ss_pred CChHHHHHHHHHHHH
Q 007329 413 GNLDLGIKLHQLAMR 427 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~ 427 (608)
.+...|.+++-.+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 566677776655443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.88 E-value=17 Score=35.54 Aligned_cols=128 Identities=14% Similarity=0.086 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CCCcccH-HHHHHHH
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTG-LISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DKNVISW-TSIILGL 475 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~-~~l~~~~ 475 (608)
..|...++...+..-++.|..+|.+..+.+ +.+++.++++++.-++ .|+..-|..+|+--. -+|...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 455666677777777778888888777777 5677777777776554 566777777777543 2444333 3345556
Q ss_pred HhCCCchHHHHHHHHhHhCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
..-++-+.|..+|+..+..+..+ ...|..++.--..-|++..+..+-+++.+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 66777777777777666444444 556777777777777777776666666543
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.84 E-value=23 Score=37.02 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 200 FPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 200 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
|..+..++.-..+.+.+.++++.+.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 33445555556666666666666555
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.80 E-value=21 Score=36.39 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=55.3
Q ss_pred HHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHh-hccCCchhhhHHHHHHHHhc-CC-cchhHHhHHHHHhhhcCCh
Q 007329 70 LCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLC-EWKRGYDEGLYLHSVVSKTM-SH-LSVRLGNAFLSMFVKFGDL 146 (608)
Q Consensus 70 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~ 146 (608)
-.+-|..+.+.++|++-.. |++.+...|...+..+ ...|+.+.....|+.....- .+ .....|...|..-..++++
T Consensus 89 E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~ 167 (577)
T KOG1258|consen 89 EYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW 167 (577)
T ss_pred HHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH
Confidence 3456777777777777665 5555666666665533 34556666666665554432 11 2334555666655566667
Q ss_pred hhHHHHHcccCCCCcchHHHHH
Q 007329 147 GHAWYVFGKMCDRDLFSWNVLI 168 (608)
Q Consensus 147 ~~A~~~~~~~~~~~~~~~~~li 168 (608)
.....+++.+.+-....|+..-
T Consensus 168 k~v~~iyeRileiP~~~~~~~f 189 (577)
T KOG1258|consen 168 KRVANIYERILEIPLHQLNRHF 189 (577)
T ss_pred HHHHHHHHHHHhhhhhHhHHHH
Confidence 7777777766554444444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.48 Score=27.87 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+|..|..+|.+.|++++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3677889999999999999999874
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.37 E-value=16 Score=36.28 Aligned_cols=148 Identities=13% Similarity=0.041 Sum_probs=80.1
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
-..++..--+..+...-++.-++.++ +.||-.+...++ +--......++++++++..+.|-..=.. .... ..
T Consensus 171 Aq~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~--s~~~---~~ 242 (539)
T PF04184_consen 171 AQEIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGK--SQFL---QH 242 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhch--hhhh---hc
Confidence 45667777777888887777777766 335433322222 2223445778888888877765310000 0000 01
Q ss_pred cCChhhHHHHHcccCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHH
Q 007329 143 FGDLGHAWYVFGKMCDRD----LFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKE 218 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 218 (608)
.|.. .+....++ ..+-..+..++-+.|+.++|++.+++|.+..+..-+......|+.++...+.+.++..
T Consensus 243 ~g~~------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHF------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccch------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 1111 11112222 2222345556667888888888888887654111122345566666777777777766
Q ss_pred HHHHHH
Q 007329 219 VHVHVI 224 (608)
Q Consensus 219 ~~~~~~ 224 (608)
++.+-.
T Consensus 317 lL~kYd 322 (539)
T PF04184_consen 317 LLAKYD 322 (539)
T ss_pred HHHHhc
Confidence 666643
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.08 E-value=16 Score=34.11 Aligned_cols=159 Identities=9% Similarity=0.024 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHccCChH---HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---CcccHHHHHH
Q 007329 400 ITIASVLSACACLGNLD---LGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK---NVISWTSIIL 473 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 473 (608)
.++..++.++...+..+ +|..+++.+.... +..+.++-.-+..+.+.++.+++.+.+.+|... ....+..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 35666677777666544 4455555554322 223444445566666677888888888877632 2344555555
Q ss_pred HHH--hCCCchHHHHHHHHhH-hCCCCCHH-HHH-HHH---HHHhccC------cHHHHHHHHHHHHH-hCCCCCccHHH
Q 007329 474 GLR--LNNRSFEALIFFRKMM-LNLKPNSV-TLV-SIL---SACARIG------ALMCGKEIHAHALR-IGVAFDGFLPN 538 (608)
Q Consensus 474 ~~~--~~~~~~~A~~~~~~m~-~~~~p~~~-~~~-~ll---~~~~~~~------~~~~a~~~~~~~~~-~~~~p~~~~~~ 538 (608)
.+. .......|...+..++ ..+.|... ... .++ ......+ ..+...++++.+.+ .+.+.+..+-.
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~ 243 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAAS 243 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 442 2233456777777777 55555443 111 111 1112221 14444455554332 23333333333
Q ss_pred HHH-------HHhHhcCCHHHHHHHHHh
Q 007329 539 ALL-------DMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 539 ~l~-------~~~~~~g~~~~A~~~~~~ 559 (608)
++. ....+.+++++|.+.|+-
T Consensus 244 a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 244 AIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 322 345678899999988863
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.04 E-value=36 Score=37.90 Aligned_cols=114 Identities=17% Similarity=0.081 Sum_probs=63.2
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC 517 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~ 517 (608)
.-.++.-.+.|.+.+|+.++..-.+.--..|.+...-+.+...+++|.-+|+..- -..--+.+|...|++.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G--------klekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCG--------KLEKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc--------cHHHHHHHHHHhccHHH
Confidence 3344444555666666665543333333445555555666677777766666542 01224556667777777
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 518 GKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 518 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|+.+..++..-.-+ -..+-..|+.-+...++.-+|-++....
T Consensus 984 ~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 984 ALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 77776655321100 0112245666677777777777777665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.8 Score=42.14 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=104.9
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhh
Q 007329 69 ELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGH 148 (608)
Q Consensus 69 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (608)
.+.-.|+++.|-.++..+. ...-+.+...+..+|-.++|+++ ...|+. -.....+.|+++.
T Consensus 595 t~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~-------s~D~d~-----rFelal~lgrl~i 655 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL-------STDPDQ-----RFELALKLGRLDI 655 (794)
T ss_pred HHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc-------CCChhh-----hhhhhhhcCcHHH
Confidence 4455777777766555443 23445666667777777766554 333332 2334457899998
Q ss_pred HHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCC
Q 007329 149 AWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGY 228 (608)
Q Consensus 149 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 228 (608)
|.++..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.
T Consensus 656 A~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 656 AFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 88876654 4566799999999999999999999988654 34566677777877766666666666663
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 007329 229 EADVDVVNALITMYVKCGDLVRARLVFDGM 258 (608)
Q Consensus 229 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 258 (608)
. |....+|...|+++++.+++..-
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHhc
Confidence 2 44455677888998888887654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.81 E-value=2.6 Score=36.11 Aligned_cols=92 Identities=11% Similarity=-0.062 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhH-hCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc-cHHH--HH--
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMM-LNLKPN--SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDG-FLPN--AL-- 540 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~--~l-- 540 (608)
..+..-|++.|+.++|++.|.++. ....+. ...+..+++.....+++..+...+.++...--..+. ..-+ ..
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 334444555555555555555554 112222 223445556666666666666666655533222111 1111 11
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
+-.+...|++.+|-+.|-.+
T Consensus 120 gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 120 GLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHhchHHHHHHHHHcc
Confidence 11234567888888877666
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.81 E-value=3.9 Score=37.64 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=75.2
Q ss_pred hCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC-CCh-----hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHH
Q 007329 327 MGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES-KDV-----VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEI 400 (608)
Q Consensus 327 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 400 (608)
.|.+....+...++..-....+++++...+-++.. ++. .+-.+.++ ++-.-++++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 35555666667777777777889999988877765 211 11111222 233446678999888888999999999
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAMRTG 429 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 429 (608)
++..+|..+.+.+++..|.++...|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.29 E-value=23 Score=34.68 Aligned_cols=126 Identities=9% Similarity=0.074 Sum_probs=88.0
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHH
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD-----KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA 508 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~ 508 (608)
..+|..+++...+..-++.|+.+|-+..+ +++..++++|.-++ .|+...|..+|+--+..++.+..-..-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34566777777888888999999988763 56778888887666 4677788888887764454444444556677
Q ss_pred HhccCcHHHHHHHHHHHHHhCCC-CCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 509 CARIGALMCGKEIHAHALRIGVA-FDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+...++-+.|..+|+..++.--. --..+|..+|+-=.+-|++..|..+=+++
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 77888888888888855432111 01457777887777788887777666555
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=89.15 E-value=23 Score=34.51 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=35.8
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH-hcCCHHHHHHHHHhc
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV-RCGRMKPAWNQFNSN 560 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 560 (608)
+..+.+.|.+..|.++.+-+...++.-|+.....+|+.|+ ++++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3455666777777777777777666666666666677664 556666666666554
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.09 E-value=4.8 Score=33.35 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=8.4
Q ss_pred hHhcCCHHHHHHHHccCC
Q 007329 444 YSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~ 461 (608)
+.+.|++++|..+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444444444444444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.88 E-value=16 Score=32.34 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=8.7
Q ss_pred cCCHHHHHHHHHHHHH
Q 007329 577 RGQGALAEEFFRKMID 592 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~ 592 (608)
.|++.+|+.+|++...
T Consensus 167 leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.84 E-value=8.7 Score=32.99 Aligned_cols=87 Identities=11% Similarity=0.093 Sum_probs=61.7
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPN-----SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
.-+.+.|++++|..-|.+.+..+++. .+.|..-..++.+.+.++.|..-...+++.++... .....-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~-kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE-KALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH-HHHHHHHHHHHhh
Confidence 34567788888888888887555543 33455556677888889988888888888765422 2222334578888
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
.++++|++-++++
T Consensus 182 ek~eealeDyKki 194 (271)
T KOG4234|consen 182 EKYEEALEDYKKI 194 (271)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999999888
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.72 E-value=2.8 Score=38.53 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=39.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCch
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID-----SKGNWRKL 600 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 600 (608)
++..++..+...|+.+.+.+.+++. +-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 3444566666666666666666665 33556666666666666666666666665543 35555444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=21 Score=33.38 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=16.9
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSA 408 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 408 (608)
.+.++...|+ .+|+..+..+.+. .||...-...+.+
T Consensus 241 a~~ALg~ig~-~~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 241 IIEAAGELGD-KTLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred HHHHHHhcCC-HhHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 4445555555 3455555555543 2344444333333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.62 E-value=1.4 Score=36.37 Aligned_cols=86 Identities=9% Similarity=0.012 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCC
Q 007329 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348 (608)
Q Consensus 269 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 348 (608)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++ ..+..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 344555566666677777777766555566667777777777766666666655 1122333556666666666
Q ss_pred hHHHHHHHhhCCC
Q 007329 349 REEGEKVFSRMES 361 (608)
Q Consensus 349 ~~~a~~~~~~~~~ 361 (608)
++++.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 6666666655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.43 E-value=5.2 Score=29.83 Aligned_cols=86 Identities=22% Similarity=0.204 Sum_probs=58.8
Q ss_pred chhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007329 111 YDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWV 190 (608)
Q Consensus 111 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 190 (608)
.++|.-+-+.+...+.. ...+--.-+..+...|++++|..+.+.++.||...|-+|-. .+.|-.+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45666666665554422 22222233456678899999999999999999999987755 4677777788888888777
Q ss_pred CCCCCCcchHH
Q 007329 191 GGVKPDVYTFP 201 (608)
Q Consensus 191 ~~~~p~~~~~~ 201 (608)
| .|....|.
T Consensus 98 g--~p~lq~Fa 106 (115)
T TIGR02508 98 G--DPRLQTFV 106 (115)
T ss_pred C--CHHHHHHH
Confidence 6 55555553
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.3 Score=26.79 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888888888888888764
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.95 Score=25.65 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 567 WNILLTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 567 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
+-.+..++.+.|++++|.+.|+++++. .|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 345666777888888888888888876 565
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.28 E-value=11 Score=38.29 Aligned_cols=151 Identities=16% Similarity=0.090 Sum_probs=92.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007329 173 KAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRAR 252 (608)
Q Consensus 173 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 252 (608)
-.|+++.|..++..+. ...-+.+...+.+.|-.++|+++ .+|.... .....+.|+++.|.
T Consensus 598 mrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHH
Confidence 3456666555443322 22334455556666666666554 2232221 22335668888888
Q ss_pred HHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCC
Q 007329 253 LVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDD 332 (608)
Q Consensus 253 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 332 (608)
++..+.. +..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+.+....+-....+.|
T Consensus 658 ~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g---- 722 (794)
T KOG0276|consen 658 DLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG---- 722 (794)
T ss_pred HHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc----
Confidence 7765543 566788888888888888888888876654 5566667777777776666666655555
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCC
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRME 360 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 360 (608)
..|....+|...|+++++.+++.+-.
T Consensus 723 --~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 723 --KNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred --ccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 23445556677777777777765543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.17 E-value=14 Score=30.93 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=25.6
Q ss_pred HhcCCHHHHHHHHccCCCCCcccHHHHH-----HHHHhCCCchHHHHHHHHhH
Q 007329 445 SKCKCIDKALEVFHQIPDKNVISWTSII-----LGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~m~ 492 (608)
.+.+..++|+.-|..+.+.+.-.|-.|. ....+.|+...|...|.++-
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 3455566666666666555544444432 22345555555666665554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.16 E-value=38 Score=35.78 Aligned_cols=171 Identities=11% Similarity=0.112 Sum_probs=88.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCC---cchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007329 168 IGGYAKAGFFDEALSLYQRMFWVGGVKPD---VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVK 244 (608)
Q Consensus 168 i~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 244 (608)
|+-+.+.+.+++|++..+.-. |..|. .......|..+...|++++|-...-.|... +..-|..-+..+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~---~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI---GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 444566777777777666543 23332 234555666677777777777666666532 33444444444555
Q ss_pred cCCHHHHHHHHccCCCC-CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHH
Q 007329 245 CGDLVRARLVFDGMPKR-DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGY 323 (608)
Q Consensus 245 ~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 323 (608)
.|+......++=.-..+ +...|..++..+.. .+. ..+++..... +...|..+.-.-+.. .+
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~W----p~~Lys~l~iisa~~----------~q 497 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEW----PGHLYSVLTIISATE----------PQ 497 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhC----ChhhhhhhHHHhhcc----------hH
Confidence 55544433332222221 66788888888776 222 2222222221 222232221111111 11
Q ss_pred HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChh
Q 007329 324 VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV 365 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 365 (608)
..+. .-+...-..|+..|...+++++|...+-...++++.
T Consensus 498 ~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 498 IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 1111 111222334888999999999999999888876554
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=88.13 E-value=40 Score=35.94 Aligned_cols=410 Identities=8% Similarity=-0.052 Sum_probs=207.9
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCc-chhHHhHHHHHhhhcCC
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL-SVRLGNAFLSMFVKFGD 145 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 145 (608)
.....++|++..+..+...+...-+ ..-..|..+...+. ...++ ++-.-+.+..-.| ....-...+..+.+.++
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~ 114 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARRED 114 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccC
Confidence 4456788999988777776643111 11222322222221 11233 3323333333223 23334455566777888
Q ss_pred hhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 146 LGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 146 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
+......+.. +..+...-.....+....|+.++|.+....+-..| ......+..++..+. +
T Consensus 115 w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g--~~~p~~cd~l~~~~~----------------~ 175 (644)
T PRK11619 115 WRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG--KSLPNACDKLFSVWQ----------------Q 175 (644)
T ss_pred HHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--CCCChHHHHHHHHHH----------------H
Confidence 8888873333 33444445566777888899888888887776665 233344555554444 4
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHH
Q 007329 226 FGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI 305 (608)
Q Consensus 226 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 305 (608)
.|.-.+...+.. +......|+...|..+...+..........++..+.+ ...+..++.. +.|+...-..++
T Consensus 176 ~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~-----~~~~~~~~~~~~ 246 (644)
T PRK11619 176 SGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFART-----TGPTDFTRQMAA 246 (644)
T ss_pred cCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhc-----cCCChhhHHHHH
Confidence 443333334433 3444577888888888887743222233344443332 2222222211 112321111111
Q ss_pred HHHh--hcCChhhHHHHHHHHHHhC-CCCCc--ccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCC
Q 007329 306 SASE--LVGDEKLGREVHGYVIKMG-FSDDV--SVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSV 378 (608)
Q Consensus 306 ~~~~--~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~ 378 (608)
.++. ...+.+.|...+....... +.+.. .+...+.......+...++...++.... .+.......+..-.+.+
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHcc
Confidence 1221 3445688888888764443 22221 2233343333333335677777776544 24444444555555888
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc
Q 007329 379 LPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 379 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
+++.+...+..|.... .-...-.-.+.+++...|+.+.|..+|+.+.. .. ..|..|..- +.|..-. +.
T Consensus 327 dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~--~fYG~LAa~--~Lg~~~~----~~ 394 (644)
T PRK11619 327 DRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR--GFYPMVAAQ--RLGEEYP----LK 394 (644)
T ss_pred CHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC--CcHHHHHHH--HcCCCCC----CC
Confidence 8888888888875532 22344455666776778999999988888643 12 234333221 1221100 00
Q ss_pred cCCCCCc------ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 459 QIPDKNV------ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 459 ~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
....+.. ..--.-+..+...|+...|...+..+... .+......+.....+.|.++.+.....
T Consensus 395 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 395 IDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred CCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 0000000 01112234556667777777777666633 233334444444455566666655443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.88 E-value=3.8 Score=37.71 Aligned_cols=73 Identities=8% Similarity=0.026 Sum_probs=33.1
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HhCCCCCccHHHHHHHH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHAL-----RIGVAFDGFLPNALLDM 543 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~~~l~~~ 543 (608)
++..+...|+.+.+.+.+++...-.+-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+...+...
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 33344444444444444444443333344444444444444444444444444433 34555555544444333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.1 Score=41.52 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=20.1
Q ss_pred hHhcCCHHHHHHHHccCC--CC-CcccHHHHHHHHHhCCCchHHHH
Q 007329 444 YSKCKCIDKALEVFHQIP--DK-NVISWTSIILGLRLNNRSFEALI 486 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~ 486 (608)
|.+.|.+++|+..|.... .| |++++..-..+|.+.+++..|..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 455555555555555433 12 44444444444444444444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.66 E-value=20 Score=31.89 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=55.2
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCCC-----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRMES-----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLS 407 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 407 (608)
...+......+...+++..+...+..... .....+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555566666666666666666655432 3334455555566666677777777777776543331 11222222
Q ss_pred -HHHccCChHHHHHHHHHHHH
Q 007329 408 -ACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 408 -~~~~~~~~~~a~~~~~~~~~ 427 (608)
.+...|+++.+...+.....
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 138 GALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 56677777777777777644
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.64 E-value=3.4 Score=35.87 Aligned_cols=77 Identities=12% Similarity=-0.016 Sum_probs=59.9
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC--CCccHHHHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA--FDGFLPNALLDM 543 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~ 543 (608)
+.+..+..+.+.+...+|+...+.-++..+.|..+-..++..++-.|++++|..-++-.-+..+. +....|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45666788899999999999999888666667788888999999999999999888877655433 334566666654
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.41 E-value=30 Score=33.81 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=56.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESK---DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC 411 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 411 (608)
..|+.-|...|++.+|...++++.-| ..+.+.+++.+.-+.|+-...+.++++....|.. |.+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhh
Confidence 45778888999999999999998875 5578899999999999888888888888877643 45555566554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=87.38 E-value=16 Score=30.70 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 419 IKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
.++++.+.+.+++++...+..+++.+.+.|++..-..++.- ++-+|
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----------------------------------~Vi~D 59 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----------------------------------HVIPD 59 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----------------------------------cccCC
Confidence 34455556677777777888888888777777666665543 22233
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHH-HhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-CCCHHHHHHHHHHHHh
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHAL-RIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ERDVSAWNILLTGYAE 576 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~~~ 576 (608)
.......+-.+.. .+..+.++--.|. +.+ ..+..+++.+...|++-+|..+.++. .-+......++.+...
T Consensus 60 Sk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 60 SKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAAN 132 (167)
T ss_pred cHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHH
Confidence 3322222211111 1222222211221 211 13345677778888888888888775 4444444566777777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 007329 577 RGQGALAEEFFRKMIDS 593 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~ 593 (608)
.+|...-..+++-..+.
T Consensus 133 ~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEER 149 (167)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77766666666655544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=26 Score=32.79 Aligned_cols=57 Identities=4% Similarity=-0.031 Sum_probs=31.4
Q ss_pred CccHHHHHHHHhHhcCCHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 533 DGFLPNALLDMYVRCGRMKPAWNQFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+..+-...+.++++.|+. .|...+-+. .++ .....+.++...|+. +|...+.++.+.
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 445555556666666663 344443333 222 234556666777764 577777777654
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.85 E-value=23 Score=32.72 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-----CCHhHHHHHHHHHHhcCChhHHHHHHH
Q 007329 228 YEADVDVVNALITMYVKCGDLVRARLVFDGMPK-----RDRISWNAMISGYFENGEYMKGLMLFI 287 (608)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~ 287 (608)
-.++..+...++..++..+++.+-.++++.... .|...|..+|+...+.|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 355555666666666666666666666665433 266667777777777777554444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.78 E-value=7.8 Score=33.24 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHhHhcCCHHHHHHHHHhc-----CC-CHHHHH--H
Q 007329 500 VTLVSILSACARIGALMCGKEIHAHALRIGVAFDG--FLPNALLDMYVRCGRMKPAWNQFNSN-----ER-DVSAWN--I 569 (608)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~-~~~~~~--~ 569 (608)
..+..+...|.+.|+.+.|.+.+.++.+....+.. ..+-.+|....-.|++..+...+.++ .. |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46778899999999999999999999987666543 44567888889999999999998887 22 222111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 007329 570 LLT--GYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 570 l~~--~~~~~g~~~~A~~~~~~m~ 591 (608)
... .+...|++..|.+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 3456789999988877664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.42 E-value=4.4 Score=37.31 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=64.4
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC---------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 007329 226 FGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR---------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDP 296 (608)
Q Consensus 226 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 296 (608)
.|......+...++..-....+++.+...+-.+... ...+|- +.+ -.-+.++++-++..=.+-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~i---rll-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWI---RLL-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHH---HHH-HccChHHHHHHHhCcchhcccc
Confidence 344445555555555555566677777666555432 222222 222 2345667888887778888888
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhC
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMG 328 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 328 (608)
|.++++.+|..+.+.+++..|..+.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888888877766554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.26 E-value=25 Score=31.77 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=91.3
Q ss_pred ChHHHHHHHhhCCC----C---ChhhHHHHHHHHHcCCCchHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccCCh
Q 007329 348 NREEGEKVFSRMES----K---DVVSWTTMISCYEGSVLPDKAVETYQMMEAE---GS--MPDEITIASVLSACACLGNL 415 (608)
Q Consensus 348 ~~~~a~~~~~~~~~----~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~--~p~~~t~~~ll~~~~~~~~~ 415 (608)
++++|+.-|+++.+ . .....-.+|..+.+.+++++.++.+.+|..- .+ .-+..+.+.++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555554433 1 1223344566666666666666666665421 01 12344566666666655555
Q ss_pred HHHHHHHHHHHH-----hCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC------------CC---cccHHHHHHHH
Q 007329 416 DLGIKLHQLAMR-----TGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD------------KN---VISWTSIILGL 475 (608)
Q Consensus 416 ~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~---~~~~~~l~~~~ 475 (608)
+.-.++++.-.+ .+-..-..+-..|...|...|.+.+..+++.++.. +. ...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 555555543221 11112223334566667777777777666666541 11 13455566777
Q ss_pred HhCCCchHHHHHHHHhH--hCCCCCHHHHHHHHHHH-----hccCcHHHHHH
Q 007329 476 RLNNRSFEALIFFRKMM--LNLKPNSVTLVSILSAC-----ARIGALMCGKE 520 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~--~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~ 520 (608)
...++-.+-..+|+..+ ...-|.+... .+++-| .+.|.+++|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 77777777777777776 4444544433 334433 45677777654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.76 E-value=36 Score=33.06 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=25.1
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC
Q 007329 305 ISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES 361 (608)
Q Consensus 305 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (608)
..+.-+.|+++...++....... .++..++.++... ..++.+++...++....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 34555666666644444433211 1233333333322 55666666666655543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=53 Score=35.00 Aligned_cols=114 Identities=13% Similarity=-0.048 Sum_probs=68.7
Q ss_pred CCCchHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 007329 377 SVLPDKAVETYQMMEAEG-SMPDE--ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKA 453 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 453 (608)
..+.+.|..++....... ..++. .....+.......+..+.+...++...... .+......-+..-.+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 455688888988875443 32222 223334333333332556666666543222 2444445555566688999999
Q ss_pred HHHHccCCC--CCcccH-HHHHHHHHhCCCchHHHHHHHHhH
Q 007329 454 LEVFHQIPD--KNVISW-TSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 454 ~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
...+..|.. .+..-| .=+..++...|+.++|...|+...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999998863 122222 235566677899999999999874
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.51 E-value=1.2 Score=25.84 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007329 561 ERDVSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 561 ~~~~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
+.|...|..+...|...|++++|++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 5578999999999999999999863
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=85.12 E-value=17 Score=30.83 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC----C-------HHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHH
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG----R-------MKPAWNQFNSN---ERDVSAWNILLTGYAERGQGA 581 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 581 (608)
++|..-|++++..++. ....+..++.+|...+ + +++|.+.|+++ +|+...|+.-+....
T Consensus 52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------ 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------ 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------
Confidence 3444445555554443 3355666777665443 2 45555566655 888888887776653
Q ss_pred HHHHHHHHHHHcC
Q 007329 582 LAEEFFRKMIDSK 594 (608)
Q Consensus 582 ~A~~~~~~m~~~g 594 (608)
.|-++..++.+.+
T Consensus 125 kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 KAPELHMEIHKQG 137 (186)
T ss_dssp THHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHH
Confidence 3556666665554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.07 E-value=11 Score=28.00 Aligned_cols=61 Identities=7% Similarity=0.104 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHH-hcCCcchhHHhHHH
Q 007329 75 SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSK-TMSHLSVRLGNAFL 137 (608)
Q Consensus 75 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 137 (608)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+.. .+. +...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 5556777778888888889999999999999999999999999887663 332 333555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.47 E-value=2.2 Score=24.36 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 566 AWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 566 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+|..+...|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5666777777788888888888777663
|
... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.18 E-value=66 Score=34.75 Aligned_cols=54 Identities=15% Similarity=0.120 Sum_probs=29.3
Q ss_pred HcCCCchHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 007329 375 EGSVLPDKAVETYQMMEAE----GSMPDEITIASVLSACACLGNLDLGIKLHQLAMRT 428 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 428 (608)
...|++++|.++.+..... -..+....+..+..+..-.|+++.|..+.....+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 3456666666665554432 12233444555555555666677766666655543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.03 E-value=3.2 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=10.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 502 LVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
|..+..++...|++++|...++++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33334444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.41 E-value=1.9 Score=24.57 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=12.1
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..+...|...|++++|.+.|+++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334455555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=83.41 E-value=52 Score=32.99 Aligned_cols=167 Identities=10% Similarity=0.057 Sum_probs=90.7
Q ss_pred CCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007329 330 SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLS 407 (608)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 407 (608)
..|....-+++..+.....+.-++.+..+|.. .+-..|..++.+|... ..++-..+++++.+..+. |...-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44666666777777777777777777777765 4556677777888777 447777777777775432 3333333333
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCC-----chhHHHHHHHHhHhcCCHHHHHHHHccCCCC-----CcccHHHHHHHHHh
Q 007329 408 ACACLGNLDLGIKLHQLAMRTGLIS-----YIIIANTLIDMYSKCKCIDKALEVFHQIPDK-----NVISWTSIILGLRL 477 (608)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~ 477 (608)
.| ..++.+.+..+|..+...-++- -...|..|...- ..+.|....+..++... ..+.+.-+-.-|..
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33 3377777777777666443221 112333333211 23444444444444422 12233333444555
Q ss_pred CCCchHHHHHHHHhHhCCCCCHHH
Q 007329 478 NNRSFEALIFFRKMMLNLKPNSVT 501 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~p~~~~ 501 (608)
..++++|++++..+++.-..|...
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhH
Confidence 556666666666555333333333
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=83.17 E-value=8.5 Score=34.99 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=71.3
Q ss_pred HHHHhCCChHHHHHHHHHHhhcC-----CCCChh------h--HHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHh
Q 007329 68 NELCLNGSLEQALKYLDSMQELN-----ICVDED------A--LVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGN 134 (608)
Q Consensus 68 ~~~~~~~~~~~A~~~~~~~~~~g-----~~~~~~------~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (608)
..+.-..|+..|++..++-.+.= ...+.. + ...=|.+++..++|.++....-.--+..-+....+.-
T Consensus 43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIle 122 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILE 122 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH
Confidence 33445667777777777654320 111111 1 1122568888888888766544443333333455556
Q ss_pred HHHHHhhhcCChhhHHHHHcccCC----CCcchHHHHHHHHH-----hcCChhHHHHHH
Q 007329 135 AFLSMFVKFGDLGHAWYVFGKMCD----RDLFSWNVLIGGYA-----KAGFFDEALSLY 184 (608)
Q Consensus 135 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-----~~g~~~~a~~~~ 184 (608)
.-|-.|.+.|+...+.++-....+ .+...|.+++..|. -.|.+++|.++.
T Consensus 123 LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 123 LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 667778899998888887765522 34445777666554 469999998887
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.12 E-value=69 Score=34.13 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHHHhHhcCCHHHHHHHHHhc-----CC---CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN-----ER---DVSAWN-----ILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+...+. .|+..+..+..... +. ....|. .+...+...|+.++|.+..++...
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333344 67777766655444 22 344563 344457788999999988877653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.02 E-value=30 Score=29.86 Aligned_cols=89 Identities=12% Similarity=0.063 Sum_probs=55.2
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc-CCCHH--HHHHHHHHHHhcCCH
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN-ERDVS--AWNILLTGYAERGQG 580 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~l~~~~~~~g~~ 580 (608)
...+...+++++|..-++......-.-+ ...--.|.......|.+|+|+..++.. .++-. ....-...+...|+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 4455666777777766665553211100 111123556677788888888888887 44322 234455668888888
Q ss_pred HHHHHHHHHHHHcC
Q 007329 581 ALAEEFFRKMIDSK 594 (608)
Q Consensus 581 ~~A~~~~~~m~~~g 594 (608)
++|+.-|++.++.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888888764
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.90 E-value=13 Score=27.86 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=37.5
Q ss_pred HHhHhcCCHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 542 DMYVRCGRMKPAWNQFNSN-ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 542 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
..+...|+|++|..+.+.. -||...|-+|- -.+.|..+.+...+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 3466788888888888888 88888887774 446777777777777776553
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.84 E-value=8 Score=29.06 Aligned_cols=63 Identities=6% Similarity=0.101 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHH
Q 007329 75 SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLS 138 (608)
Q Consensus 75 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (608)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...-.. ....|..++.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHHH
Confidence 33456667777777788888888888888888888888888888876554322 2225555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.65 E-value=13 Score=31.94 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=66.5
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHhHhcCCHHHHHHHHHhc-CCCH---HHHHHHHHHHHhcC
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDG----FLPNALLDMYVRCGRMKPAWNQFNSN-ERDV---SAWNILLTGYAERG 578 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~l~~~~~~~g 578 (608)
.-+...|++++|..-|.++++.-+.... ..|..-..++.+.+.++.|++-..+. .-++ .....-..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3466789999999999999876554332 33444556788999999999988777 3333 23333345788899
Q ss_pred CHHHHHHHHHHHHHcCCCCCc
Q 007329 579 QGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 579 ~~~~A~~~~~~m~~~g~~p~~ 599 (608)
++++|++-|+++++. .|..
T Consensus 183 k~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHh--Ccch
Confidence 999999999999886 5543
|
|
| >PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF | Back alignment and domain information |
|---|
Probab=82.24 E-value=0.99 Score=35.63 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=31.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCchhhhhcccC
Q 007329 573 GYAERGQGALAEEFFRKMIDSKGNWRKLMGLFRKCQ 608 (608)
Q Consensus 573 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~~ac~ 608 (608)
.....|.-.+|-.+|++|++.|-.||+...|+.+|+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW~~Ll~~a~ 139 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDWDALLKEAK 139 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccHHHHHHHhc
Confidence 345567778899999999999999999999999885
|
The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.16 E-value=3.1 Score=25.84 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 569 ILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 569 ~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
.|..+|...|+.+.|.+++++.++.|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46778888888888888888888643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=82.09 E-value=51 Score=31.97 Aligned_cols=65 Identities=6% Similarity=-0.054 Sum_probs=41.6
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMP---DEITIASVLSACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (608)
...+|..+...+.+.|.++.|...+..+...+... ++.....-....-..|+...|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777778888888888777777643211 233333445555666777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.98 E-value=39 Score=30.56 Aligned_cols=182 Identities=14% Similarity=0.036 Sum_probs=91.5
Q ss_pred HHHcCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 373 CYEGSVLPDKAVETYQMMEAEGS--MPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 373 ~~~~~~~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
.-.+.|++++|.+.|+.+..... .-...+...++.++.+.++++.|....++.++.-......-|-..+.+++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs----- 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS----- 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH-----
Confidence 34566777777777777776531 12345566666777777888888777777665433333333444444443
Q ss_pred HHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 451 DKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
.|..+..++-. ..-..+|+.-|++.+...|.+..+- .|..-+..+...
T Consensus 118 -----~~~~i~~~~rD-----------q~~~~~A~~~f~~~i~ryPnS~Ya~--------------dA~~~i~~~~d~-- 165 (254)
T COG4105 118 -----YFFQIDDVTRD-----------QSAARAAFAAFKELVQRYPNSRYAP--------------DAKARIVKLNDA-- 165 (254)
T ss_pred -----HhccCCccccC-----------HHHHHHHHHHHHHHHHHCCCCcchh--------------hHHHHHHHHHHH--
Confidence 22222211100 0012234444444443333222111 111111111100
Q ss_pred CCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 531 AFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ER---DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
=...=..+.+-|.+.|.+-.|..-+++| +. -...+-.+..+|...|-.++|...-+-+...
T Consensus 166 --LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 166 --LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred --HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 0000123556677777777777777777 11 1334556667777788877777776666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.64 E-value=13 Score=27.74 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLI 441 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 441 (608)
++.+-++.+....+.|++......+++|-+.+++..|.++++-+...- ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455566667777788899999999999999999999999988766322 12344555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.70 E-value=13 Score=27.97 Aligned_cols=60 Identities=12% Similarity=0.138 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
+..+-++.+....+.|++......+++|-+.+++..|.++++-+...- .....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455566666777788999999999999999999999999998777432 222336666554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.61 E-value=3.1 Score=22.21 Aligned_cols=18 Identities=17% Similarity=0.064 Sum_probs=8.0
Q ss_pred HHHHhHhcCCHHHHHHHH
Q 007329 540 LLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~ 557 (608)
+..++...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.33 E-value=49 Score=30.57 Aligned_cols=58 Identities=9% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 234 VVNALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
+++.....|..+|.+.+|.++.+....- +...|-.++..++..|+--.+.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4456677888999999999998887754 566788899999999998888888777753
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.04 E-value=2.8 Score=25.25 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=20.1
Q ss_pred cHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 535 FLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+++.|...|...|++++|..+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 35677888888889988888888775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 5e-07
Identities = 18/166 (10%), Positives = 45/166 (27%), Gaps = 8/166 (4%)
Query: 289 MREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGN 348
R+ P L+ ++ + + + G + S K L
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142
Query: 349 REEGEKVFSRMESK-------DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEIT 401
+ + + + ++ + + V M++ G PD ++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 402 IASVLSACACLGNLDLGI-KLHQLAMRTGLISYIIIANTLIDMYSK 446
A+ L I + + + GL + L+ +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 7e-07
Identities = 17/159 (10%), Positives = 45/159 (28%), Gaps = 8/159 (5%)
Query: 193 VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRAR 252
P +L+ G L + + + A + L A
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 253 LVFDGMPKR-------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVI 305
+ + +NA++ G+ G + + + + M+++ + PD ++ ++ +
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 306 SASELVG-DEKLGREVHGYVIKMGFSDDVSVCNPLIKMY 343
D + + G L+
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 1e-06
Identities = 24/237 (10%), Positives = 63/237 (26%), Gaps = 9/237 (3%)
Query: 380 PDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLG---IKLHQLAMRTGLISYIII 436
D + + + C L L + +H + + + +
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM 167
Query: 437 ANTLIDMYSKCKCIDKALEVFHQIPDK----NVISWTSIILGL-RLNNRSFEALIFFRKM 491
N ++ +++ + + V + D +++S+ + + + R + + +M
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 492 M-LNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM 550
LK ++ +LS R L ++ + LL
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287
Query: 551 KPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKLMGLFRKC 607
+ + L ++ E + RK + R
Sbjct: 288 VSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.7 bits (114), Expect = 6e-06
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 134 NAFLSMFVKFGDLGHAWYVFGKMCDR-------DLFSWNVLIGGYAKAGFFDEALSLYQR 186
AF + L A ++ + L +N ++ G+A+ G F E + +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 187 MFWVGGVKPDVYTFPCVLRTCG 208
+ G+ PD+ ++ L+ G
Sbjct: 191 VKD-AGLTPDLLSYAAALQCMG 211
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-05
Identities = 73/541 (13%), Positives = 144/541 (26%), Gaps = 191/541 (35%)
Query: 12 TPLRQNLRNPKTRIPETSFYFKPKTRHFSSKNAQSVQVLNTQNTSSIATKNPNSRLNELC 71
+P++ R P TR + Q N + + K SRL
Sbjct: 96 SPIKTEQRQPS-----------MMTRMYIE------QRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 72 LNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLH-------SV-VSK 123
L QAL L + + + +
Sbjct: 139 ---KLRQALLELRPAK--------------------------NVLIDGVLGSGKTWVALD 169
Query: 124 TMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEAL-S 182
V+ F +F W C+ ++ E L
Sbjct: 170 VCLSYKVQCKMDF-KIF---------WLNLKN-CNSP----ETVL----------EMLQK 204
Query: 183 LYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKR--GKEVHVH---VIRFGYEADV---DV 234
L ++ + D ++ LR +L+R + + + V+ +V
Sbjct: 205 LLYQIDPNWTSRSD-HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-----NVQNAKA 258
Query: 235 VNALITMYVKCGDLV--RARLVFDGMP--KRDRISWNAMISGYFENGEYMKGLMLFIMM- 289
NA + C L+ R + V D + IS + E L+ ++
Sbjct: 259 WNA---FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCR 314
Query: 290 -----REVL-VDP-----------------------DFMTLSSVISASELVGDEKLGREV 320
REVL +P + L+++I +S V + R++
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 321 HGY---VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVV-SWTTMISCYEG 376
+ + F + L+ + + + V +++ +V +
Sbjct: 375 --FDRLSV---FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-- 427
Query: 377 SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIII 436
+P +E +E E + LH+
Sbjct: 428 --IPSIYLELKVKLENEYA-------------------------LHR------------- 447
Query: 437 ANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNN-RSFEALIFFRKMMLNL 495
+++D Y+ K D + +G L N E + FR + L+
Sbjct: 448 --SIVDHYNIPKTFDS--DDLIPPYLDQYFYS---HIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 496 K 496
+
Sbjct: 501 R 501
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 608 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.25 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.24 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.21 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.15 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.14 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.13 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.1 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.92 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.85 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.83 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.78 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.77 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.69 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.67 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.64 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.61 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.61 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.6 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.58 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.54 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.52 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.45 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.42 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.42 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.42 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.42 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.39 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.39 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.36 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.33 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.31 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.29 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.29 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.29 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.27 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.25 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.25 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.23 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.2 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.18 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.08 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.03 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.03 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.03 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.99 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.98 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.97 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.96 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.94 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.9 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.8 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.78 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.77 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.77 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.76 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.74 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.66 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.6 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.6 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.59 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.49 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.47 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.45 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.43 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.4 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.38 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.27 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.17 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.13 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.89 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.75 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.69 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.61 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.4 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.33 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.3 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.13 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.08 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.9 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.77 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.67 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.16 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.05 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.87 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.87 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.82 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.74 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.42 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.32 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.12 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.57 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.61 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.01 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.71 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.4 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.77 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.4 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.94 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 89.77 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.4 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.64 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.58 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.35 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.88 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.58 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.37 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.95 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.8 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.08 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.83 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.59 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.49 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.36 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.4 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.26 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 80.34 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=357.28 Aligned_cols=470 Identities=11% Similarity=0.036 Sum_probs=324.3
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
|+.++..+.+.|++++|+.+|+++.. ..|+..++..++.+|...|++++|..+++.+... .++..+++.++.+|.+
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHH
Confidence 78889999999999999999999875 4467788888889999999999999998877544 4677888999999999
Q ss_pred cCChhhHHHHHcccCCC-------------------CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHH
Q 007329 143 FGDLGHAWYVFGKMCDR-------------------DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCV 203 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 203 (608)
.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 240 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQL 240 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHH
Confidence 99999999999965332 36788999999999999999999999998764 3344455555
Q ss_pred HHHhcCCCChhhHH--HH-HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCHhHHHHHHHHHHhcCC
Q 007329 204 LRTCGGVPDLKRGK--EV-HVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK--RDRISWNAMISGYFENGE 278 (608)
Q Consensus 204 l~~~~~~~~~~~a~--~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~ 278 (608)
...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 55554443322211 11 44444445555566677778888888888888888888877 678888888888888888
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhh
Q 007329 279 YMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR 358 (608)
Q Consensus 279 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (608)
+++|.++|+++.+.+. .+..++..++.++.+.|+.++|.++++.+.+.. +.+..+++.++..|.+.|++++|.++|++
T Consensus 321 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 321 FIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8888888888876542 256677777777777777777777777777553 44566666666667777777666666666
Q ss_pred CCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh
Q 007329 359 MES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYII 435 (608)
Q Consensus 359 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 435 (608)
+.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..++..++.+|.+.|++++|.++|+.+.+.. +.+.
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~- 475 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP- 475 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH-
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-
Confidence 542 345566666666666666666666666665543 2244555555555555555555555555555443 2234
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH-h----CCCCC--HHHHHHHHHH
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-L----NLKPN--SVTLVSILSA 508 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~----~~~p~--~~~~~~ll~~ 508 (608)
.+|+.++..|.+.|++++|+++|+++. . +..|+ ..+|..++.+
T Consensus 476 ------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~ 525 (597)
T 2xpi_A 476 ------------------------------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525 (597)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 445555555555555555555555554 1 44555 5667777777
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 509 CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
|.+.|++++|.++++++.+.++. +..+|..++.+|.+.|++++|.+.|+++ +.+...|..+...|
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTN-DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 77777777777777777666533 5666777777777777777777777766 33455666655544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=356.44 Aligned_cols=498 Identities=8% Similarity=-0.006 Sum_probs=342.8
Q ss_pred HHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhH
Q 007329 70 LCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHA 149 (608)
Q Consensus 70 ~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 149 (608)
+.+.|.+..+...+..+. .++...|+.++..|.+.|++++|..+++.+.... |+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHH
Confidence 344555666666655443 3578889999999999999999999999998655 4668889999999999999999
Q ss_pred HHHHccc--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhC
Q 007329 150 WYVFGKM--CDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG 227 (608)
Q Consensus 150 ~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (608)
..+|+++ ..++..+++.++.+|.+.|++++|+++|+++.... . ...++...++. ..|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~----~~~~~~~~~~~-----------~~~ 195 (597)
T 2xpi_A 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR------K----DEKNANKLLMQ-----------DGG 195 (597)
T ss_dssp HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------------------CC-----------CSS
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcc------c----ccccccccccc-----------ccc
Confidence 9999998 55788999999999999999999999999532211 0 00000000110 112
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHH--HH-HHHHHHCCCCCChhHH
Q 007329 228 YEADVDVVNALITMYVKCGDLVRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGL--ML-FIMMREVLVDPDFMTL 301 (608)
Q Consensus 228 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~--~~-~~~m~~~~~~p~~~~~ 301 (608)
.+.+..+|+.++.+|.+.|++++|.++|+++.+. +...+..+...+...+..+.+. .+ +..+...+..+...+|
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 275 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHH
Confidence 3334455555555555555555555555554321 2333333333332222211111 11 3333333333444455
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCC
Q 007329 302 SSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSV 378 (608)
Q Consensus 302 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~ 378 (608)
+.++..|.+.|++++|.++|+.+.+. +++..+++.++..|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC
Confidence 55555666666666666666665544 35566666666666666666666666666543 34556666666777777
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHc
Q 007329 379 LPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 379 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
++++|..+++++.+.. ..+..++..++..|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|++++|.++|+
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776442 3356677777777777777777777777776654 4456677777777777778887777777
Q ss_pred cCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh----CCC
Q 007329 459 QIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRI----GVA 531 (608)
Q Consensus 459 ~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 531 (608)
++. ..+..+|+.++.+|.+.|++++|+++|+++....+.+..+|..++..+.+.|++++|.++++++.+. +..
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 511 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc
Confidence 654 2467788899999999999999999999998555668999999999999999999999999999877 667
Q ss_pred CC--ccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 532 FD--GFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 532 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
|+ ..+|..++.+|.+.|++++|.+.++++ +.+..+|..++.+|...|++++|.++|+++.+. .|++.
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 584 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEI 584 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCh
Confidence 77 679999999999999999999999998 458999999999999999999999999999986 77765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=250.81 Aligned_cols=211 Identities=12% Similarity=0.077 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhcCCCCCC-cchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHcc
Q 007329 179 EALSLYQRMFWVGGVKPD-VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDG 257 (608)
Q Consensus 179 ~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 257 (608)
.+..+.+++.+.+ +.+. ...++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 8 PSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred hHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455566666665 4443 3468889999999999999999999999999999999999999999887765432
Q ss_pred CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccch
Q 007329 258 MPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCN 337 (608)
Q Consensus 258 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (608)
.+.+..++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 2345678899999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007329 338 PLIKMYLSFGNREEGEKVFSRMES----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412 (608)
Q Consensus 338 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 412 (608)
.+|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888864 788888888888888888888888888888888888888888888877753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-26 Score=224.97 Aligned_cols=370 Identities=11% Similarity=0.066 Sum_probs=190.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007329 169 GGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL 248 (608)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 248 (608)
..+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++..++.. +.+..+|..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 34455666666666666665532 2233334444444555555666655555555442 33444555555555555555
Q ss_pred HHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-hHHHHHHHHHhhcCChhhHHHHHHHH
Q 007329 249 VRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF-MTLSSVISASELVGDEKLGREVHGYV 324 (608)
Q Consensus 249 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 324 (608)
++|...|+++.+ .+...|..+..++.+.|++++|.+.|+++.+. .|+. ..+..+...+...|++++|.+.|+.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555554431 13334555555555555555555555554442 2222 22333333344444444444444444
Q ss_pred HHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007329 325 IKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIAS 404 (608)
Q Consensus 325 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 404 (608)
.+.. +. +..+|..+...+...|++++|...|+++.+.+ +.+...+..
T Consensus 162 l~~~-p~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 162 IETQ-PN-------------------------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp HHHC-TT-------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhC-CC-------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 4332 22 23344444444444555555555555444432 112344444
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHHHHHhCCCc
Q 007329 405 VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIILGLRLNNRS 481 (608)
Q Consensus 405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 481 (608)
+...+...|++++|...++...+.. +.+..++..+..+|.+.|++++|.+.|+++.+ | +...|..+...+.+.|++
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 4555555555555555555544433 22344445555555555555555555554431 1 234555566666666666
Q ss_pred hHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-
Q 007329 482 FEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN- 560 (608)
Q Consensus 482 ~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 560 (608)
++|++.|+++....+.+..++..+...+...|++++|.+.++++.+..+. +...+..++.+|.+.|++++|.+.++++
T Consensus 288 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666444555666666666666666666666666666654322 3455666666666667777776666666
Q ss_pred ---CCCHHHHHHHHHHHHhcC
Q 007329 561 ---ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 561 ---~~~~~~~~~l~~~~~~~g 578 (608)
+.+...|..+...+...|
T Consensus 367 ~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 367 RISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTC
T ss_pred hhCCCCHHHHHhHHHHHHHcc
Confidence 334556666666655544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-26 Score=225.71 Aligned_cols=329 Identities=10% Similarity=0.019 Sum_probs=251.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYL 344 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 344 (608)
.+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...|+.+.+.. +.+...+..+..++.
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALV 112 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 33344444444444455544444444321 2234445555555555555555555555555442 223344555666666
Q ss_pred hcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 007329 345 SFGNREEGEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKL 421 (608)
Q Consensus 345 ~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 421 (608)
+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+.. +-+..++..+...+...|++++|...
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666655543 3 33456667777888888999999998888763 23578899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC--C-CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 422 HQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP--D-KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
++.+.+.+ +.+...+..+...+...|++++|...|++.. . .+..+|..+...+.+.|++++|++.|+++....+.+
T Consensus 192 ~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 270 (388)
T 1w3b_A 192 FEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999876 5567888999999999999999999998765 2 356789999999999999999999999999655667
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
..++..+..++.+.|++++|.+.++++.+..+. +..++..++..|.+.|++++|.+.++++ +.+..+|..++..|
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 889999999999999999999999999988654 7788999999999999999999999998 44688999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 575 AERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+.|++++|.+.++++.+. .|+..
T Consensus 350 ~~~g~~~~A~~~~~~a~~~--~p~~~ 373 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRI--SPTFA 373 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTT--CTTCH
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCH
Confidence 9999999999999999874 78776
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=244.88 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCC---------hhhHHHHHHHHHHhCCCCCcc
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGD---------EKLGREVHGYVIKMGFSDDVS 334 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 334 (608)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. .+.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888899999999999999999999999999999999999999987664 678999999999999999999
Q ss_pred cchHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007329 335 VCNPLIKMYLSFGNREEGEKVFSRMES----KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACA 410 (608)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 410 (608)
+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999975 8999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc
Q 007329 411 CLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC 447 (608)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 447 (608)
+.|++++|.+++++|.+.|..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-24 Score=217.71 Aligned_cols=424 Identities=8% Similarity=-0.052 Sum_probs=229.9
Q ss_pred hHHhHHHHHhhhcCChhhHHHHHcccC--CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc
Q 007329 131 RLGNAFLSMFVKFGDLGHAWYVFGKMC--DRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG 208 (608)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~ 208 (608)
..+......+.+.|++++|+..|+++. .|+..+|..+..++.+.|++++|++.++++.+.. +.+...+..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHH
Confidence 445566677777788888888887773 3677777777788888888888888888877654 445567777777777
Q ss_pred CCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC----CHhHHHHHHHHHHhcCChhHHHH
Q 007329 209 GVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR----DRISWNAMISGYFENGEYMKGLM 284 (608)
Q Consensus 209 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~ 284 (608)
..|++++|...|+.+.+.+ +++......++..+........+.+.+..+... +...+..-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 8888888888888777765 234444444444444433333333322222111 11111111111111111112222
Q ss_pred HHHHHHHCCCCC--------C-hhHHHHHHHHHh---hcCChhhHHHHHHHHHH-----hCCC--------CCcccchHH
Q 007329 285 LFIMMREVLVDP--------D-FMTLSSVISASE---LVGDEKLGREVHGYVIK-----MGFS--------DDVSVCNPL 339 (608)
Q Consensus 285 ~~~~m~~~~~~p--------~-~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~l 339 (608)
+...+......+ + ...+......+. +.|++++|..+++.+.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 222221111111 1 222222222222 26777777777777666 2111 123445556
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 007329 340 IKMYLSFGNREEGEKVFSRMES--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDL 417 (608)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 417 (608)
...+...|++++|...|+++.+ |+...|..+...|...|++++|...++++.... ..+...+..+...+...|+++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 6666666666666666666543 334555556666666666666666666666543 2244555666666666666666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHh-
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMML- 493 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~- 493 (608)
|...++.+.+.. +.+...+..+...|.+.|++++|...++++. ..+...|..+...+...|++++|...++++..
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 666666666544 3344555666666666666666666666544 12344555566666666666666666666551
Q ss_pred -CCCCC----HHHHHHHHHHHhc---cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 494 -NLKPN----SVTLVSILSACAR---IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 494 -~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
...++ ...+..+...+.. .|++++|...++++.+..+. +...+..++.+|.+.|++++|.+.++++
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11111 2255556666666 66666666666666555433 3445555666666666666666666655
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-22 Score=207.95 Aligned_cols=437 Identities=10% Similarity=-0.046 Sum_probs=281.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhc
Q 007329 64 NSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKF 143 (608)
Q Consensus 64 ~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (608)
..+-..+.+.|++++|+..|+++.+.. |+...+..+..++...|++++|...++.+++..+. +...+..+..++.+.
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHH
Confidence 344455666666666666666666544 45566666666666666666666666666655432 334455555555555
Q ss_pred CChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHH
Q 007329 144 GDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVH 220 (608)
Q Consensus 144 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 220 (608)
|++++|...|+++.. .+......++..+........+.+.+..+...+ ..|+...+..-...
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-------------- 151 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT-ATPTELSTQPAKER-------------- 151 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------------
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhccCChhhHH--------------
Confidence 555555555554411 122223333333333222222222222222221 11111111110000
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-CHhHHHHHHHHHHh---cCChhHHHHHHHHHHH-----
Q 007329 221 VHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-DRISWNAMISGYFE---NGEYMKGLMLFIMMRE----- 291 (608)
Q Consensus 221 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~----- 291 (608)
.......|+...... +.......... ..+..+ +...+......+.. .|++++|...|+++.+
T Consensus 152 --~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 152 --KDKQENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp -------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred --HhhccCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 000011122111111 11111000000 111112 34455555555554 7889999999998877
Q ss_pred CCCCC--------ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--
Q 007329 292 VLVDP--------DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES-- 361 (608)
Q Consensus 292 ~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 361 (608)
....| +...+..+...+...|++++|...++.+.+.... ...+..+...+...|++++|...++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence 31122 2446677778888899999999999998887533 77888889999999999999999988765
Q ss_pred -CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 007329 362 -KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTL 440 (608)
Q Consensus 362 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (608)
.+...|..+...|...|++++|...+++..+... .+...+..+...+...|+++.|...++.+.+.. +.+...+..+
T Consensus 301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 378 (514)
T 2gw1_A 301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFF 378 (514)
T ss_dssp TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHH
Confidence 3567888889999999999999999999988753 256788888999999999999999999998765 4567788889
Q ss_pred HHHhHhcCCHHHHHHHHccCCC--C-C------cccHHHHHHHHHh---CCCchHHHHHHHHhHhCCCCCHHHHHHHHHH
Q 007329 441 IDMYSKCKCIDKALEVFHQIPD--K-N------VISWTSIILGLRL---NNRSFEALIFFRKMMLNLKPNSVTLVSILSA 508 (608)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~~~~--~-~------~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~ 508 (608)
...|.+.|++++|...++++.+ | + ...|..+...+.. .|++++|.+.++++....+.+..++..+...
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 9999999999999999988762 1 2 3388899999999 9999999999999985455678889999999
Q ss_pred HhccCcHHHHHHHHHHHHHhCCC
Q 007329 509 CARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
+...|++++|...++++.+..+.
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHhcCHHHHHHHHHHHHHhccc
Confidence 99999999999999999987654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.7e-23 Score=211.75 Aligned_cols=417 Identities=13% Similarity=0.001 Sum_probs=263.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITM 241 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 241 (608)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++.+++.+ +.+..++..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 345555566666666666666666666543 3455566666666666666666666666666654 3355666667777
Q ss_pred HHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCCChhHHHHHHHHHhhcCChh
Q 007329 242 YVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREV------LVDPDFMTLSSVISASELVGDEK 315 (608)
Q Consensus 242 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~ 315 (608)
|...|++++|...|+.+ ..++...+..+..+...+...+|...++++... ...|+...... +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 77777777777777533 222223333344455555556677777666432 12233333222 22222322
Q ss_pred hHHHHHHHHHHhCCCCCcc---cchHHHHHH--------HhcCChHHHHHHHhhCCC--CC--------hhhHHHHHHHH
Q 007329 316 LGREVHGYVIKMGFSDDVS---VCNPLIKMY--------LSFGNREEGEKVFSRMES--KD--------VVSWTTMISCY 374 (608)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~---~~~~l~~~~--------~~~~~~~~a~~~~~~~~~--~~--------~~~~~~li~~~ 374 (608)
.+...+... ...+.. ....+...+ ...|++++|..+|+++.+ |+ ...+..+...+
T Consensus 178 ~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 178 LEVSSVNTS----SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHTSCCC----CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc----cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 222211110 011111 111111111 112467777777777765 22 12455566677
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHH
Q 007329 375 EGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKAL 454 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 454 (608)
...|++++|...+++..+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 7888888888888888875 4557777778888888888888888888888765 456677788888888888888888
Q ss_pred HHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 455 EVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 455 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
+.|+++. ..+...|..+...+...|++++|++.++++....+.+...+..+...+...|++++|.+.++++.+..+.
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 8888765 2345677888888888888888888888888445556677888888888888888888888887765432
Q ss_pred CC-----ccHHHHHHHHhHhc----------CCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 532 FD-----GFLPNALLDMYVRC----------GRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 532 p~-----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.. ...+..+..+|.+. |++++|...++++ +.+...|..+...|...|++++|.+.|++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 11233445667777 8888888888887 44677888888888888888888888888887
Q ss_pred c
Q 007329 593 S 593 (608)
Q Consensus 593 ~ 593 (608)
.
T Consensus 491 ~ 491 (537)
T 3fp2_A 491 L 491 (537)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=196.69 Aligned_cols=208 Identities=8% Similarity=-0.026 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 007329 179 EALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGM 258 (608)
Q Consensus 179 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 258 (608)
.+...+....... +.+...+..+...+.+.|++++|..+|+.+++.. +.+..++..+..+|...|++++|...|+++
T Consensus 10 ~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 10 GVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455544332 4556677777788888888888888888887764 446777788888888888888888888776
Q ss_pred CC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHH------------HhhcCChhhHHH
Q 007329 259 PK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF----MTLSSVISA------------SELVGDEKLGRE 319 (608)
Q Consensus 259 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~------------~~~~~~~~~a~~ 319 (608)
.+ .+...|..+...|.+.|++++|.+.|+++.+. .|+. ..+..+... +...|++++|..
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 53 35667788888888888888888888888764 3333 444444333 455555555555
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007329 320 VHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEA 392 (608)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (608)
.++.+.+.. +.+..++..+..+|.+.|++++|.++|+++.+ .+..+|..+...|...|++++|+..|+++..
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555443 33444555555555555555555555555433 2344555555555555555555555555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-21 Score=193.04 Aligned_cols=345 Identities=12% Similarity=-0.012 Sum_probs=197.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007329 230 ADVDVVNALITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVIS 306 (608)
Q Consensus 230 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 306 (608)
.+...+..+...|.+.|++++|..+|+++.+ .+...|..+..++...|++++|...|+++.+.+ +.+...+..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 3455666666666666666666666665542 255566666666666666666666666666542 123445555566
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCCCc---ccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHH
Q 007329 307 ASELVGDEKLGREVHGYVIKMGFSDDV---SVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKA 383 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 383 (608)
.+...|++++|...++.+.+.. +.+. ..+..+...+... .+..+...+...|++++|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHH
Confidence 6666666666666666665432 2222 3333332221000 011112234555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-
Q 007329 384 VETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD- 462 (608)
Q Consensus 384 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 462 (608)
+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++.+
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555432 2244555555555555566666665555555443 33445555555555566666666655555441
Q ss_pred -C-CcccHHHH------------HHHHHhCCCchHHHHHHHHhHhCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHH
Q 007329 463 -K-NVISWTSI------------ILGLRLNNRSFEALIFFRKMMLNLKPN----SVTLVSILSACARIGALMCGKEIHAH 524 (608)
Q Consensus 463 -~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (608)
| +...+..+ ...+.+.|++++|++.|+++....+.+ ...+..+..++.+.|++++|...+++
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 22222222 667777788888888888877322222 33667777778888888888888888
Q ss_pred HHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHH------------HHhcC-----CHHHH
Q 007329 525 ALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTG------------YAERG-----QGALA 583 (608)
Q Consensus 525 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~------------~~~~g-----~~~~A 583 (608)
+.+..+. +...+..++.+|...|++++|.+.++++ .| +...+..+..+ |...| +.+++
T Consensus 321 a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~ 399 (450)
T 2y4t_A 321 VLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHH
T ss_pred HHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHH
Confidence 7776543 5677777888888888888888888777 33 45666666533 33334 55666
Q ss_pred HHHHHHHHHcCCCCCc
Q 007329 584 EEFFRKMIDSKGNWRK 599 (608)
Q Consensus 584 ~~~~~~m~~~g~~p~~ 599 (608)
.+.++++... ..||.
T Consensus 400 ~~~y~~~~l~-~~pd~ 414 (450)
T 2y4t_A 400 IKAYRKLALQ-WHPDN 414 (450)
T ss_dssp HHHHHHHHHH-SCGGG
T ss_pred HHHHHHHHHH-hCCCC
Confidence 7777763221 35554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=195.78 Aligned_cols=423 Identities=10% Similarity=-0.044 Sum_probs=212.8
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhh
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVK 142 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (608)
+..+...+.+.|++++|+..|+++.+..+ .+...+..+..++...|++++|...++.+++..+. +...+..+..++..
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 44455556666666666666666655332 24455555555556666666666666665555432 34444555555555
Q ss_pred cCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHH
Q 007329 143 FGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVH 222 (608)
Q Consensus 143 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 222 (608)
.|++++|...|+.+ ..+....+..+..+...+....|++.++.+.... |+.
T Consensus 106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~---~~~------------------------- 156 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD---EGR------------------------- 156 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC---------------------------------
T ss_pred cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC---ccc-------------------------
Confidence 55555555555422 1111111222333333334444555555443221 000
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHh---HHHHHHHHHHh--------cCChhHHHHHHHHHHH
Q 007329 223 VIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRI---SWNAMISGYFE--------NGEYMKGLMLFIMMRE 291 (608)
Q Consensus 223 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~ 291 (608)
.....|+ ...+..+....+.+.+...+......+.. ....+...+.. .|++++|..+++++.+
T Consensus 157 --~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~ 230 (537)
T 3fp2_A 157 --GSQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS 230 (537)
T ss_dssp ----CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --cccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0001122 23344455566666666666666554332 33333333222 2366777777777665
Q ss_pred CCCCCCh-h-------HHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCC
Q 007329 292 VLVDPDF-M-------TLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKD 363 (608)
Q Consensus 292 ~~~~p~~-~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 363 (608)
.. |+. . ++..+...+...|++++|...++.+.+.. |+
T Consensus 231 ~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~ 275 (537)
T 3fp2_A 231 AN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---------------------------------PT 275 (537)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC
T ss_pred HC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---------------------------------CC
Confidence 42 221 1 23333334444445555555555444432 23
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 353 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344444445555555555555555555432 1234455555555555555666655555555543 2334455555555
Q ss_pred hHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhH--h--C--CCCCHHHHHHHHHHHhcc--
Q 007329 444 YSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMM--L--N--LKPNSVTLVSILSACARI-- 512 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~--~--~~p~~~~~~~ll~~~~~~-- 512 (608)
|.+.|++++|.+.++++. ..+...|..+...+...|++++|.+.|+++. . . .......+......+...
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 433 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS 433 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 666666666666655543 1234455566666666666666666666655 1 1 111222234444555555
Q ss_pred --------CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 513 --------GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 513 --------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|++++|...++++.+..+. +...+..++.+|.+.|++++|.+.|+++
T Consensus 434 ~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 434 QDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7777777777777766543 4566677777777777777777777776
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-17 Score=163.63 Aligned_cols=299 Identities=10% Similarity=-0.049 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMY 343 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (608)
..+..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 345555556666666666666666655532 1234455555555566666666666666655543 33444555555566
Q ss_pred HhcCChHHHHHHHhhCCC--C----ChhhHHHH------------HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007329 344 LSFGNREEGEKVFSRMES--K----DVVSWTTM------------ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASV 405 (608)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~--~----~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 405 (608)
...|++++|...|++..+ | +...+..+ ...+...|++++|+..++++.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 666666666666555543 2 11112211 233444444444444444444332 1133334444
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHH
Q 007329 406 LSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 406 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
...+...|+++.|...++.+.+.. +.+. ..|..+...+...|++++|.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------------------------------~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNT-------------------------------EAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCH-------------------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCH-------------------------------HHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444444444332 2233 34444444444455555555
Q ss_pred HHHHHhHhCCCCCHHHHH------------HHHHHHhccCcHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHhHhcCC
Q 007329 486 IFFRKMMLNLKPNSVTLV------------SILSACARIGALMCGKEIHAHALRIGVAFDG----FLPNALLDMYVRCGR 549 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~ 549 (608)
+.+++.....+.+...+. .+...+.+.|++++|...++++.+..+. +. ..+..+..+|.+.|+
T Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~ 287 (359)
T 3ieg_A 209 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEK 287 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccC
Confidence 555544422222222221 2244455566666666666666554433 21 123345566666666
Q ss_pred HHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 550 MKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 550 ~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+++|.+.++++ +.+...|..+...|...|++++|.+.|++..+. .|++.
T Consensus 288 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~ 340 (359)
T 3ieg_A 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQ 340 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCh
Confidence 66666666665 335556666666666666666666666666653 45543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-18 Score=164.60 Aligned_cols=274 Identities=8% Similarity=-0.018 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHH
Q 007329 298 FMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCY 374 (608)
Q Consensus 298 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~ 374 (608)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455566667777778888888887777664 44556666677777777777777777766543 2445666666666
Q ss_pred HcCCCchHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 375 EGSVLPDKAVETYQMMEAEGSMP---D-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~g~~p---~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
...|++++|...++++.+. .| + ...+..+..... ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 7777777777777766654 23 1 112211111000 01122335667778888
Q ss_pred HHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 451 DKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 451 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
++|.+.++++. ..+...+..+...+...|++++|+..++++....+.+..++..+...+...|++++|.+.++++.+
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888765 235567888888999999999999999999855666888999999999999999999999999998
Q ss_pred hCCCCCccHHH------------HHHHHhHhcCCHHHHHHHHHhc---CCC-H----HHHHHHHHHHHhcCCHHHHHHHH
Q 007329 528 IGVAFDGFLPN------------ALLDMYVRCGRMKPAWNQFNSN---ERD-V----SAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 528 ~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~---~~~-~----~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
..+. +...+. .++..+.+.|++++|.+.++++ .|+ . ..|..+...+...|++++|.+.+
T Consensus 217 ~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 217 LDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7654 333332 2367799999999999999998 443 3 23556888999999999999999
Q ss_pred HHHHHcCCCCCch
Q 007329 588 RKMIDSKGNWRKL 600 (608)
Q Consensus 588 ~~m~~~g~~p~~~ 600 (608)
++..+. .|+..
T Consensus 296 ~~~~~~--~~~~~ 306 (359)
T 3ieg_A 296 SEVLQM--EPDNV 306 (359)
T ss_dssp HHHHHH--CTTCH
T ss_pred HHHHHh--CcccH
Confidence 999986 67665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-16 Score=163.48 Aligned_cols=467 Identities=13% Similarity=0.041 Sum_probs=332.9
Q ss_pred hHH-HHHHHHhCCChHHHHHHHHHHhhc----CCCCChhhHHHHHHHhhccCCchhhh-----------HHHHHHHHhc-
Q 007329 63 PNS-RLNELCLNGSLEQALKYLDSMQEL----NICVDEDALVNLVRLCEWKRGYDEGL-----------YLHSVVSKTM- 125 (608)
Q Consensus 63 ~~~-ll~~~~~~~~~~~A~~~~~~~~~~----g~~~~~~~~~~ll~~~~~~~~~~~a~-----------~~~~~~~~~~- 125 (608)
|.+ .+..||...|+--|.-.|++-.-. .+......|....+.+.++.+.+.=- ++.++.....
T Consensus 900 yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL 979 (1630)
T 1xi4_A 900 YDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTAL 979 (1630)
T ss_pred ccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhc
Confidence 444 467799988888887777641000 01122334555555555444433222 2222222222
Q ss_pred -CCcchhHHhHHHHHhhhcCChhhHHHHHcccCC-C-----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc
Q 007329 126 -SHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD-R-----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY 198 (608)
Q Consensus 126 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 198 (608)
-..++.--...++.|...|...+|++++++..- + +...-+.++.+..+. +..+..++.++... .
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~ 1050 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------Y 1050 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------c
Confidence 122333345678888899999999999998842 2 224556677777766 55677776666542 1
Q ss_pred hHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCC
Q 007329 199 TFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGE 278 (608)
Q Consensus 199 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 278 (608)
...-+...+...|.+++|..+|++.. ......+.++ -..|++++|.++.++.. +..+|..+..++.+.|+
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCC
Confidence 23447778889999999999999852 1222223332 37789999999999774 57789999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhh
Q 007329 279 YMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR 358 (608)
Q Consensus 279 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 358 (608)
+++|++.|.+. -|...|..++.++.+.|++++|.+++....+.. ++..+.+.++.+|.+.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999663 477889999999999999999999999887764 55555667999999999999755553
Q ss_pred CCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHH
Q 007329 359 MESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIAN 438 (608)
Q Consensus 359 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (608)
..++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|.
T Consensus 1191 -~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1191 -NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred -hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 4566777888889999999999999999985 48999999999999999999999875 4568888
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCC-CHHHHHHHHHHHh--ccCcH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKP-NSVTLVSILSACA--RIGAL 515 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p-~~~~~~~ll~~~~--~~~~~ 515 (608)
.+-.+|...|++..|...... ...++..+..++..|.+.|.+++|+.+++..+ ++.+ ....|.-+...++ +-++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL-~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAAL-GLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccChhHhHHHHHHHHHHHhCCHHHH
Confidence 888999999999999998775 33455667789999999999999999998887 4433 3345544444444 44566
Q ss_pred HHHHHHHHHHHHhCCCC------CccHHHHHHHHhHhcCCHHHHHHHH-------------Hhc---CCCHHHHHHHHHH
Q 007329 516 MCGKEIHAHALRIGVAF------DGFLPNALLDMYVRCGRMKPAWNQF-------------NSN---ERDVSAWNILLTG 573 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~---~~~~~~~~~l~~~ 573 (608)
.++.++|..-. ++.+ +...|..++-.|.+.|+++.|.... +.. ..|+..|...+..
T Consensus 1333 mEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1333 REHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH
Confidence 66666655322 2222 4677899999999999999998322 222 3467777777777
Q ss_pred HHhcC
Q 007329 574 YAERG 578 (608)
Q Consensus 574 ~~~~g 578 (608)
|....
T Consensus 1411 yl~~~ 1415 (1630)
T 1xi4_A 1411 YLEFK 1415 (1630)
T ss_pred HHhhC
Confidence 76554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.6e-18 Score=161.83 Aligned_cols=281 Identities=12% Similarity=0.011 Sum_probs=200.7
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHH
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISC 373 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~ 373 (608)
+...+..+...+...|++++|.++++.+.+.. +.+...+..++..+...|++++|..+++++.+ .+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 44444555555555566666666666655543 33444555566666666666666666666543 345566667777
Q ss_pred HHcCC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHH
Q 007329 374 YEGSV-LPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDK 452 (608)
Q Consensus 374 ~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 452 (608)
+...| ++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 77777 7777777777777654 2245667777777788888888888888777665 3345556667778888888888
Q ss_pred HHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhC---------CCCCHHHHHHHHHHHhccCcHHHHHH
Q 007329 453 ALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLN---------LKPNSVTLVSILSACARIGALMCGKE 520 (608)
Q Consensus 453 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~ 520 (608)
|.+.+++..+ .+...|..+...+...|++++|...++++... .+.+..++..+..++...|++++|..
T Consensus 178 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 178 AERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 8888887653 34567778888888888888888888888721 13446788899999999999999999
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH-HhcCCHH
Q 007329 521 IHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY-AERGQGA 581 (608)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~-~~~g~~~ 581 (608)
.++++.+..+. +...+..+..+|.+.|++++|.+.++++ +.+...+..+..++ ...|+.+
T Consensus 258 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 YHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999987655 6788889999999999999999999988 44678888888887 4556543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-15 Score=160.53 Aligned_cols=350 Identities=14% Similarity=0.087 Sum_probs=269.6
Q ss_pred CcchHHHHHHHhcCCCChhhHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHH
Q 007329 196 DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGY--EADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGY 273 (608)
Q Consensus 196 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 273 (608)
|+.-....+++|...|.+.+|.++++..+-.+- ..+...-+.++.+..+. +..+..++.+....-+ ...+...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 344456778889999999999999999884421 13445666677777776 5577777776665333 44577888
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGE 353 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (608)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.+.. .+..+|..+..++...|++++|.
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999999852 12222333332 678899999988854 35778999999999999999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc
Q 007329 354 KVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY 433 (608)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (608)
+.|.+. .|...|..++.++.+.|++++|++.+....+.. ++....+.++.+|++.++++....+.+ .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCC
Confidence 999775 677788889999999999999999999877764 333333458899999998886554431 445
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
...+..+...|...|++++|..+|... ..|..+..+|++.|++++|++.+++. .+..+|..+..+|...|
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhh
Confidence 566777999999999999999999986 48999999999999999999999987 36689999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHhc--CCHHHHHHHH
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---E-RDVSAWNILLTGYAER--GQGALAEEFF 587 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~~~~~~~~l~~~~~~~--g~~~~A~~~~ 587 (608)
++..|...... +..++..+..++..|.+.|.+++|+.+++.. . .....|+-|...|.+. ++..++.++|
T Consensus 1265 Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998887653 3336677889999999999999999999887 3 2345676666666654 4555555555
Q ss_pred HH
Q 007329 588 RK 589 (608)
Q Consensus 588 ~~ 589 (608)
..
T Consensus 1340 ~~ 1341 (1630)
T 1xi4_A 1340 WS 1341 (1630)
T ss_pred HH
Confidence 53
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-18 Score=164.37 Aligned_cols=220 Identities=10% Similarity=0.116 Sum_probs=60.2
Q ss_pred hcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHH
Q 007329 142 KFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHV 221 (608)
Q Consensus 142 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 221 (608)
+.|++++|.+.++++.+|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6688999999999996654 899999999999999999999964 3577799999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHH
Q 007329 222 HVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTL 301 (608)
Q Consensus 222 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 301 (608)
..++. .+++.+.+.++.+|.+.|+++++.++++. ++..+|+.+...|...|.+++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 45577888899999999999998877753 55567777777777777777777777755 245
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCch
Q 007329 302 SSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPD 381 (608)
Q Consensus 302 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 381 (608)
..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 55555555555555555555544 144555555555555555555544444333 22222223444455555555
Q ss_pred HHHHHHHHHH
Q 007329 382 KAVETYQMME 391 (608)
Q Consensus 382 ~a~~~~~~m~ 391 (608)
+|+.+++...
T Consensus 225 Eai~lLe~aL 234 (449)
T 1b89_A 225 ELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555554444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-17 Score=159.67 Aligned_cols=268 Identities=11% Similarity=-0.005 Sum_probs=231.4
Q ss_pred CCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007329 329 FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASV 405 (608)
Q Consensus 329 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 405 (608)
.+.+..++..+...+...|++++|.++|+++.+ .+...+..++.++...|++++|..+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 356777888899999999999999999999865 345567778889999999999999999999864 2356788888
Q ss_pred HHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCc
Q 007329 406 LSACACLG-NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRS 481 (608)
Q Consensus 406 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 481 (608)
...+...| +++.|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 89999999 9999999999998765 45677889999999999999999999998763 3457788899999999999
Q ss_pred hHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC--------CCCccHHHHHHHHhHhcCCHHHH
Q 007329 482 FEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV--------AFDGFLPNALLDMYVRCGRMKPA 553 (608)
Q Consensus 482 ~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A 553 (608)
++|.+.+++.....+.+...+..+...+...|++++|...++++.+... ......+..++.+|.+.|++++|
T Consensus 176 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999965666788999999999999999999999999987532 23457889999999999999999
Q ss_pred HHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 554 WNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 554 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+.++++ +.+...|..+...|...|++++|.+.+++..+. .|+..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 304 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDT 304 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCH
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCch
Confidence 9999998 557889999999999999999999999999874 77766
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-19 Score=167.89 Aligned_cols=285 Identities=12% Similarity=0.036 Sum_probs=122.1
Q ss_pred hcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHH
Q 007329 244 KCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGY 323 (608)
Q Consensus 244 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 323 (608)
+.|++++|.++++++..+ .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 557788888888887544 47788888888888888888888542 4667788888888888888888887776
Q ss_pred HHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007329 324 VIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA 403 (608)
Q Consensus 324 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 403 (608)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 6654 44567778888888888888887777653 66678888888888888888888888866 3677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchH
Q 007329 404 SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFE 483 (608)
Q Consensus 404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 483 (608)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8888888888888888888766 267788888888888888888877666654 334344467788888888888
Q ss_pred HHHHHHHhHhCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHhCCCC------CccHHHHHHHHhHhcCCHHHHHH
Q 007329 484 ALIFFRKMMLNLKPNSVTLVSILSACAR--IGALMCGKEIHAHALRIGVAF------DGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 484 A~~~~~~m~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
|+.+++..+..-+-....|+-+..++++ -+++.+.++.|.. +.++.| +...|..++..|...++++.|..
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 8888888872223345555555555544 4455555554431 222222 56778889999999999998877
Q ss_pred HHHh
Q 007329 556 QFNS 559 (608)
Q Consensus 556 ~~~~ 559 (608)
..-.
T Consensus 304 tm~~ 307 (449)
T 1b89_A 304 TMMN 307 (449)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5533
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-15 Score=154.34 Aligned_cols=345 Identities=13% Similarity=0.042 Sum_probs=172.7
Q ss_pred CcchHHHHHHHhcC----CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHccCCCC-CHhHH
Q 007329 196 DVYTFPCVLRTCGG----VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVK----CGDLVRARLVFDGMPKR-DRISW 266 (608)
Q Consensus 196 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~ 266 (608)
+...+..+...+.. .+++++|.+.|+...+.| +...+..|...|.. .++.++|.+.|++..+. ++..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44455555555544 566666666666666554 34455556666666 66666666666654433 45555
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh----cCChhhHHHHHHHHHHhCCCCCcccchH
Q 007329 267 NAMISGYFE----NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL----VGDEKLGREVHGYVIKMGFSDDVSVCNP 338 (608)
Q Consensus 267 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (608)
..|...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|.+.|+...+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 555555655 556666666666665543 33444444444443 455666666666555543 3444455
Q ss_pred HHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHc----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007329 339 LIKMYLS----FGNREEGEKVFSRMES-KDVVSWTTMISCYEG----SVLPDKAVETYQMMEAEGSMPDEITIASVLSAC 409 (608)
Q Consensus 339 l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 409 (608)
+...|.. .++.++|.++|++..+ .+...+..+...|.. .+++++|..+|++..+.| +...+..+...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 5555554 4555555555555433 333444444444443 455555555555555443 333344444444
Q ss_pred Hc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc-----CCHHHHHHHHccCCC-CCcccHHHHHHHHHhCC
Q 007329 410 AC----LGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC-----KCIDKALEVFHQIPD-KNVISWTSIILGLRLNN 479 (608)
Q Consensus 410 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~ 479 (608)
.. .++.++|...++...+.| +...+..+...|... ++.++|...|++..+ .+...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 44 455555555555554433 223334444444443 455555555544432 22333444444444433
Q ss_pred ---CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cC
Q 007329 480 ---RSFEALIFFRKMMLNLKPNSVTLVSILSACAR----IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CG 548 (608)
Q Consensus 480 ---~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 548 (608)
+.++|+++|++..+. .+...+..+...+.. .+++++|.+.++++.+.+ ++..+..|..+|.+ .+
T Consensus 343 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444455555544421 233444444444444 445555555555544433 23344444444444 44
Q ss_pred CHHHHHHHHHhc
Q 007329 549 RMKPAWNQFNSN 560 (608)
Q Consensus 549 ~~~~A~~~~~~~ 560 (608)
++++|.+.|+++
T Consensus 418 d~~~A~~~~~~A 429 (490)
T 2xm6_A 418 DYVQAWAWFDTA 429 (490)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555555444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-15 Score=154.86 Aligned_cols=351 Identities=14% Similarity=0.037 Sum_probs=204.4
Q ss_pred chhHHhHHHHHhhh----cCChhhHHHHHcccCC-CCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCCcch
Q 007329 129 SVRLGNAFLSMFVK----FGDLGHAWYVFGKMCD-RDLFSWNVLIGGYAK----AGFFDEALSLYQRMFWVGGVKPDVYT 199 (608)
Q Consensus 129 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~ 199 (608)
+...+..+...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+++|++..+.+ +...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence 34444555555555 5566666666655422 344455555555555 555666666666555432 2333
Q ss_pred HHHHHHHhcC----CCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHh
Q 007329 200 FPCVLRTCGG----VPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFE 275 (608)
Q Consensus 200 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 275 (608)
+..+...+.. .+++++|.+.|+...+.| ++..+..+...|..
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------------------------------~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----------------------------------RDSGQQSMGDAYFE 159 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------------CHHHHHHHHHHHHc
Confidence 3344444433 445555555555554443 33334444444443
Q ss_pred ----cCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhh----cCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHh--
Q 007329 276 ----NGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL----VGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLS-- 345 (608)
Q Consensus 276 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 345 (608)
.+++++|++.|++..+.| +...+..+...+.. .++.++|.++|+...+.| +...+..+...|..
T Consensus 160 g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 160 GDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 445555555555554432 33444444444444 455555555555555443 33344445555554
Q ss_pred --cCChHHHHHHHhhCCC-CChhhHHHHHHHHHc----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----C
Q 007329 346 --FGNREEGEKVFSRMES-KDVVSWTTMISCYEG----SVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL-----G 413 (608)
Q Consensus 346 --~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-----~ 413 (608)
.+++++|..+|++..+ .+...+..+...|.. .+++++|+..|++..+.| +...+..+...|... +
T Consensus 234 g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcC
Confidence 5566666666666544 344455555555555 667777777777776654 444555566666555 6
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC---CHHHHHHHHccCCC-CCcccHHHHHHHHHh----CCCchHHH
Q 007329 414 NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK---CIDKALEVFHQIPD-KNVISWTSIILGLRL----NNRSFEAL 485 (608)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~ 485 (608)
+.++|...++...+.+ +...+..+...|.+.| +.++|.+.|++..+ .++..+..+...|.. .+++++|+
T Consensus 311 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 7777777777777654 3345555666666555 66777777776553 455667777777777 77888888
Q ss_pred HHHHHhHhCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCC
Q 007329 486 IFFRKMMLNLKPNSVTLVSILSACAR----IGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~ 531 (608)
+.|++..+. .+...+..+...|.. .+++++|...++++.+.+..
T Consensus 388 ~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 388 IWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 888888732 246667777777776 78888888888888887744
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-15 Score=156.59 Aligned_cols=409 Identities=11% Similarity=0.013 Sum_probs=273.5
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHH
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNAL 238 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 238 (608)
.+...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|.++|+..++.. |+...|...
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 36678888887 477899999999999988643 5566678888888888899999999999888764 566677766
Q ss_pred HHHH-HhcCCHHHHHH----HHccCC------CCCHhHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCh
Q 007329 239 ITMY-VKCGDLVRARL----VFDGMP------KRDRISWNAMISGYFE---------NGEYMKGLMLFIMMREVLVDPDF 298 (608)
Q Consensus 239 i~~~-~~~g~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~ 298 (608)
+... ...|+.++|.+ +|+... ..+...|...+....+ .|++++|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34577666654 555431 1255677777765544 57778888888877762111111
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhh-------CC------CCC--
Q 007329 299 MTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR-------ME------SKD-- 363 (608)
Q Consensus 299 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~-- 363 (608)
..|..........|. ..+..++. .+.++++.|..++.. +. .|+
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 222222111100110 00111110 012334444444432 11 111
Q ss_pred ------hhhHHHHHHHHHcC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCChH------
Q 007329 364 ------VVSWTTMISCYEGS----VLP----DKAVETYQMMEAEGSMPDEITIASVLSACAC-------LGNLD------ 416 (608)
Q Consensus 364 ------~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~------ 416 (608)
...|...+...... ++. ..+..+|++..... +-+...|..+...+.+ .|+++
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 23454444332221 222 36777888887752 2356677777776664 68887
Q ss_pred -HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CC-c-ccHHHHHHHHHhCCCchHHHHHHHHh
Q 007329 417 -LGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KN-V-ISWTSIILGLRLNNRSFEALIFFRKM 491 (608)
Q Consensus 417 -~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~m 491 (608)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|+.++|.++|++.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8889998887632355678888899999999999999999998763 33 2 47888888888999999999999999
Q ss_pred HhCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-C---
Q 007329 492 MLNLKPNSVTLVSILSA-CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-D--- 563 (608)
Q Consensus 492 ~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~--- 563 (608)
....+.+...|...... +...|+.++|..+|+.+.+..+. ++..|..+++.+.+.|+.++|..+|+++ .| +
T Consensus 383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 83333334444433332 33589999999999999887543 6788899999999999999999999998 22 2
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 564 -VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 564 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
...|...+......|+.+.+..+++++.+. .|+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~--~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTA--FRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--THH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Cch
Confidence 448989899888999999999999999875 553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=164.01 Aligned_cols=254 Identities=10% Similarity=-0.022 Sum_probs=181.4
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACA 410 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 410 (608)
..+..+...+.+.|++++|...|+++.+ .+...|..+..+|...|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4455556666666666666666665543 244556666666666666666666666666543 224556666666666
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHH----------------HHHHHhHhcCCHHHHHHHHccCCC--C---CcccHH
Q 007329 411 CLGNLDLGIKLHQLAMRTGLISYIIIAN----------------TLIDMYSKCKCIDKALEVFHQIPD--K---NVISWT 469 (608)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~ 469 (608)
..|++++|...++.+.+.... +...+. .+...+ ..|++++|...|+++.+ | +...|.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 677777777777666654422 111111 222333 77888888888887652 3 356788
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR 549 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (608)
.+...+...|++++|+..|+++....+.+..++..+...+...|++++|...++++.+..+. +...+..++.+|.+.|+
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCC
Confidence 88888899999999999999888445556788889999999999999999999998887654 56788889999999999
Q ss_pred HHHHHHHHHhc----CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 550 MKPAWNQFNSN----ERD-----------VSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 550 ~~~A~~~~~~~----~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
+++|.+.++++ +.+ ..+|..+..+|...|++++|..++++.+
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 99999999887 333 6789999999999999999998877543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=164.09 Aligned_cols=297 Identities=12% Similarity=0.016 Sum_probs=193.9
Q ss_pred HHhcCCHHHHHH-HHccCCCC-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCC
Q 007329 242 YVKCGDLVRARL-VFDGMPKR-------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGD 313 (608)
Q Consensus 242 ~~~~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 313 (608)
+...|++++|.. .+++.... +...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577777777 77654431 24456677777888888888888888877653 2345566666677777777
Q ss_pred hhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--CC-hhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 314 EKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--KD-VVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 314 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
+++|...++.+.+.. +.+..++..+...|...|++++|.+.++++.. |+ ...+..+...
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------- 175 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG----------------- 175 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-----------------
Confidence 777777777776654 33455555566666666666666665555433 11 1111000000
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcc
Q 007329 391 EAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS-YIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVI 466 (608)
Q Consensus 391 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~ 466 (608)
.. ...+. ..+. .+..+...|++++|...++.+.+..... +..++..+...|.+.|++++|...|+++. ..+..
T Consensus 176 ~~-~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 252 (368)
T 1fch_A 176 AG-GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL 252 (368)
T ss_dssp ------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hh-hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH
Confidence 00 00000 0111 2333337788888888888888765322 56778888888888888888888888765 23457
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC----------CccH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF----------DGFL 536 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p----------~~~~ 536 (608)
.|..+...+...|++++|++.|+++....+.+...+..+..++.+.|++++|...++++.+..+.. ...+
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 888889999999999999999999985455678889999999999999999999999988764432 1578
Q ss_pred HHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 537 PNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|..++.+|.+.|++++|..++++.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 889999999999999999887653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-15 Score=141.77 Aligned_cols=251 Identities=13% Similarity=0.029 Sum_probs=200.9
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCh----hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 007329 340 IKMYLSFGNREEGEKVFSRMESKDV----VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNL 415 (608)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 415 (608)
+.-....|+++.|+..++.....+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3445667899999999888766332 2445567899999999999987654 2356777888888999999999
Q ss_pred HHHHHHHHHHHHhCCCC-chhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 007329 416 DLGIKLHQLAMRTGLIS-YIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLN 494 (608)
Q Consensus 416 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 494 (608)
+.|.+.++.+...+..| +...+..+..++.+.|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++...
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 99999999998876544 556667777889999999999999998 456778888999999999999999999999832
Q ss_pred CCCCHH-HH--HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHH
Q 007329 495 LKPNSV-TL--VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAW 567 (608)
Q Consensus 495 ~~p~~~-~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~ 567 (608)
.|+.. .. ..++..+...|++++|..+++++.+..+. +...++.++.+|.+.|++++|.+.++++ +.++.+|
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 35432 11 22334445568999999999999988544 7888999999999999999999999997 5578899
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCch
Q 007329 568 NILLTGYAERGQGAL-AEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 568 ~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~ 600 (608)
..++..+...|+.++ +.++++++++. .|++.
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 999999999999876 67899999885 77775
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-17 Score=158.22 Aligned_cols=252 Identities=10% Similarity=-0.051 Sum_probs=168.7
Q ss_pred chHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007329 336 CNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412 (608)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 412 (608)
+..+...+.+.|++++|..+|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 44445555555555555555555432 234455566666666666666666666665543 22355666666666666
Q ss_pred CChHHHHHHHHHHHHhCCCC---------chhHHHHHHHHhHhcCCHHHHHHHHccCCC--C---CcccHHHHHHHHHhC
Q 007329 413 GNLDLGIKLHQLAMRTGLIS---------YIIIANTLIDMYSKCKCIDKALEVFHQIPD--K---NVISWTSIILGLRLN 478 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~ 478 (608)
|++++|...++.+.+..... ....+..+...+.+.|++++|.+.|+++.+ | +...|..+...+...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 66666666666665533110 122233456677778888888888877652 2 456778888888888
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 558 (608)
|++++|++.|+++....+.+..++..+..++...|++++|...++++.+..+. +...+..++.+|.+.|++++|.+.++
T Consensus 227 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888555667888888899999999999999999988887654 57778888899999999999999998
Q ss_pred hc---CC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007329 559 SN---ER-------------DVSAWNILLTGYAERGQGALAEEFFRK 589 (608)
Q Consensus 559 ~~---~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 589 (608)
++ .| +...|..+..++...|+.+.+..+.++
T Consensus 306 ~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 306 TALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 87 22 256889999999999999888777654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-15 Score=152.12 Aligned_cols=415 Identities=10% Similarity=0.038 Sum_probs=270.0
Q ss_pred HHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 007329 118 HSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCD--R-DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVK 194 (608)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 194 (608)
++..++..+ -+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|.++|++..+. .
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~ 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---V 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---C
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Confidence 344445443 36778888888 4788999999999999954 3 5567899999999999999999999999864 4
Q ss_pred CCcchHHHHHHHh-cCCCChhhHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCCHHHHHHHHccC
Q 007329 195 PDVYTFPCVLRTC-GGVPDLKRGKE----VHVHVIRF-GYEA-DVDVVNALITMYVK---------CGDLVRARLVFDGM 258 (608)
Q Consensus 195 p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~ 258 (608)
|+...|...+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777776666433 35677777765 67766654 5544 46678877776655 68999999999987
Q ss_pred CCC-C---HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHh--C----
Q 007329 259 PKR-D---RISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKM--G---- 328 (608)
Q Consensus 259 ~~~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~---- 328 (608)
.+. + ...|..........|. .+...++. ...++++.|..++...... +
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 652 1 1233322221100010 00011110 0123334444444332110 0
Q ss_pred ---CCCCc--------ccchHHHHHHHhc----CCh----HHHHHHHhhCCC---CChhhHHHHHHHHHc-------CCC
Q 007329 329 ---FSDDV--------SVCNPLIKMYLSF----GNR----EEGEKVFSRMES---KDVVSWTTMISCYEG-------SVL 379 (608)
Q Consensus 329 ---~~~~~--------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~li~~~~~-------~~~ 379 (608)
++|+. ..|...+...... ++. +.+..+|++... .+...|..+...+.+ .|+
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~ 294 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGD 294 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccc
Confidence 12221 1222222211111 121 255556666554 345667666666654 677
Q ss_pred ch-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc-hhHHHHHHHHhHhcCCHH
Q 007329 380 PD-------KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY-IIIANTLIDMYSKCKCID 451 (608)
Q Consensus 380 ~~-------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 451 (608)
++ +|..+|++..+.-.+-+...+..++..+.+.|+++.|..+++.+.+.. +.+ ...|..++..+.+.|+++
T Consensus 295 ~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 295 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHH
Confidence 76 788888888752122346677777888888888888888888888743 222 247778888888888889
Q ss_pred HHHHHHccCCCCCcc---cHHHHHH-HHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 452 KALEVFHQIPDKNVI---SWTSIIL-GLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 452 ~A~~~~~~~~~~~~~---~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
+|.++|++..+.... .|...+. .+...|+.++|..+|++.+...+.+...+..++..+.+.|+.++|..+++++..
T Consensus 374 ~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 374 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 999888877643222 2222221 233689999999999999844455788899999999999999999999999988
Q ss_pred hCCC-CC--ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 528 IGVA-FD--GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 528 ~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+.. |+ ...|...+......|+.+.+..+.+++
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7543 22 337777888888899999999998887
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-16 Score=151.02 Aligned_cols=253 Identities=11% Similarity=0.024 Sum_probs=170.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG 413 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 413 (608)
..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 3444444555555555555544432 233445555555555666666666666555542 224455555566666666
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHH--------------HH-HhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHH
Q 007329 414 NLDLGIKLHQLAMRTGLISYIIIANTL--------------ID-MYSKCKCIDKALEVFHQIPD---KNVISWTSIILGL 475 (608)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 475 (608)
++++|.+.++.+.+.. +.+...+..+ .. .+...|++++|.+.++++.+ .+...+..+...+
T Consensus 104 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp CHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 6666666666655543 1112222222 22 36677778888888777652 3556777888888
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
...|++++|++.++++....+.+..++..+...+...|++++|.+.++++.+..+. +...+..++.+|.+.|++++|.+
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 88888888888888888445556788888888999999999999999988887654 56778888999999999999999
Q ss_pred HHHhc---CC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 556 QFNSN---ER-------------DVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 556 ~~~~~---~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.++++ .| +...|..+..++...|++++|..++++.++
T Consensus 262 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 262 QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99887 33 367888999999999999999988876543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.3e-16 Score=147.14 Aligned_cols=221 Identities=11% Similarity=0.017 Sum_probs=171.1
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCh
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD-EITIASVLSACACLGNL 415 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~ 415 (608)
..+..+|...|+++.|...++....++..++..+...+...++.++|++.++++...+..|+ ...+..+...+...|++
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 44567788888888888777765556667778888888888888999999998888765564 44555566788888999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCcccH---HHHHHHHHhCCCchHHHHHHHH
Q 007329 416 DLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVISW---TSIILGLRLNNRSFEALIFFRK 490 (608)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~l~~~~~~~~~~~~A~~~~~~ 490 (608)
++|.+.++. +.+...+..++.+|.+.|++++|.+.|+++.+ |+.... ...+..+...|++++|+.+|++
T Consensus 118 ~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 118 DAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp HHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999988876 46677888888888999999999998888763 443211 1223334456889999999999
Q ss_pred hHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH-HHHHHHhc---CCCH
Q 007329 491 MMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP-AWNQFNSN---ERDV 564 (608)
Q Consensus 491 m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~---~~~~ 564 (608)
+....+.+...++.+..++.+.|++++|...++++.+..+. ++.++..++..+...|+.++ +.++++++ .|+.
T Consensus 192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 98556778888999999999999999999999999988765 77788889999999999876 56788776 5543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-16 Score=152.55 Aligned_cols=272 Identities=10% Similarity=-0.028 Sum_probs=168.7
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHH
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIK 341 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 341 (608)
+...|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777777777777777777777776643 2245566666666666777777777776666553 334445555555
Q ss_pred HHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 007329 342 MYLSFGNREEGEKVFSRMESKDV---VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLG 418 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 418 (608)
.|...|++++|...|+++.+.+. ..+..+ ......+..+...+...|++++|
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------------CCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 55555555555555555433110 001000 00112233345556666666666
Q ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 007329 419 IKLHQLAMRTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLN 494 (608)
Q Consensus 419 ~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 494 (608)
...++.+.+.... .+..++..+...|.+.|++++|.+.|+++. ..+...|..+..+|.+.|++++|++.|+++...
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666666655422 145566666666666677777776666654 234567777788888888888888888888744
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC-----------CCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 495 LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA-----------FDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+.+..++..+..++...|++++|...++++.+..+. .+..+|..+..++...|+.+.|..+.++.
T Consensus 277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 4556778888888888888888888888888765432 13678889999999999999998887653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-16 Score=148.94 Aligned_cols=272 Identities=10% Similarity=-0.038 Sum_probs=182.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 007329 264 ISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMY 343 (608)
Q Consensus 264 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 343 (608)
..|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345566667777777777777777776642 2244555566666666666777766666666553 33344444555555
Q ss_pred HhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHccCChHHH
Q 007329 344 LSFGNREEGEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLS--ACACLGNLDLG 418 (608)
Q Consensus 344 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a 418 (608)
...|++++|.+.++++.+ | +...+..+.. ..|+......+.. .+...|++++|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQ----------------------ADVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH----------------------HHHHHHHHHHHHHhHHHHHcccHHHH
Confidence 555555555555544432 1 1111111100 0011111111112 26677788888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCC
Q 007329 419 IKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNL 495 (608)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 495 (608)
...++.+.+.. +.+...+..+...|.+.|++++|.+.++++. ..+...|..+...+...|++++|++.++++....
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 88888887765 4467777888888888888888888888765 2345678888899999999999999999988555
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-----------CccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 496 KPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-----------DGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.+..++..+...+...|++++|.+.++++.+..+.. +...+..+..+|.+.|++++|..++++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5678889999999999999999999999998765543 4667888999999999999999998765
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-17 Score=171.27 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=124.3
Q ss_pred chhHHhHHHHHhhhcCChhhHHHHHccc-------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHH
Q 007329 129 SVRLGNAFLSMFVKFGDLGHAWYVFGKM-------CDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFP 201 (608)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 201 (608)
-..+||++|++|++.|++++|.++|++| ..||+++||+||++|++.|++++|.++|++|.+.| +.||..||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHH
Confidence 3568999999999999999999999776 46899999999999999999999999999999888 999999999
Q ss_pred HHHHHhcCCCCh-hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----CHhHHHHHHHHHHh
Q 007329 202 CVLRTCGGVPDL-KRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR-----DRISWNAMISGYFE 275 (608)
Q Consensus 202 ~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~ 275 (608)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+..+ .+.+...|.+.|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 789999999999999999999999999888876666665555444432 12233444555554
Q ss_pred cC
Q 007329 276 NG 277 (608)
Q Consensus 276 ~~ 277 (608)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-17 Score=169.67 Aligned_cols=147 Identities=10% Similarity=0.007 Sum_probs=119.2
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCC-------CCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRME-------SKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASV 405 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 405 (608)
..+||+||++|++.|++++|.++|++|. .||++|||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4578888888888888888888886653 389999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC-----CcccHHHHHHHHHhCC
Q 007329 406 LSACACLGNL-DLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK-----NVISWTSIILGLRLNN 479 (608)
Q Consensus 406 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 479 (608)
|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+ .+.+-..|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998877766555555554444421 1233444555565544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-14 Score=144.43 Aligned_cols=367 Identities=11% Similarity=-0.037 Sum_probs=196.4
Q ss_pred CcchHHHHHHHhcCCCChhhHHHHHHHHHHh-----C---CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC-------
Q 007329 196 DVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF-----G---YEADVDVVNALITMYVKCGDLVRARLVFDGMPK------- 260 (608)
Q Consensus 196 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------- 260 (608)
....|+.+...+...|+.++|.+.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777788888888877776542 1 122345677777777777777777766654421
Q ss_pred ----CCHhHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCh-hHHHHHHHH---HhhcCChhhHHHHHHHHHHhCCC
Q 007329 261 ----RDRISWNAMISGYFEN--GEYMKGLMLFIMMREVLVDPDF-MTLSSVISA---SELVGDEKLGREVHGYVIKMGFS 330 (608)
Q Consensus 261 ----~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~ 330 (608)
....++..+..++.+. +++++|++.|++..+. .|+. ..+..+... +...++.++|.+.++..++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1234455544444443 3567777777776654 3332 222222222 334556666666666666553 2
Q ss_pred CCcccchHHHHHHHh----cCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007329 331 DDVSVCNPLIKMYLS----FGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIA 403 (608)
Q Consensus 331 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 403 (608)
.+..++..+...+.. .|++++|.+++++... .+...+..+...|...|++++|+..+++..+... -+...+.
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 285 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHC 285 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHH
Confidence 333344444333333 2445566666655432 3444555566666666666666666666655421 1233333
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCC
Q 007329 404 SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNR 480 (608)
Q Consensus 404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 480 (608)
.+...|...+... .... . ..........+..+.|...+++.. ..+...+..+...+...|+
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 3333332110000 0000 0 000000111223566777666554 3456788899999999999
Q ss_pred chHHHHHHHHhHhCCCCCHH----HHHHHHH-HHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 481 SFEALIFFRKMMLNLKPNSV----TLVSILS-ACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 481 ~~~A~~~~~~m~~~~~p~~~----~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
+++|++.|++.+.. .|+.. .+..+.. .....|++++|+..++++.+..+. .... .+..+.+.+
T Consensus 350 ~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~---------~~~~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREK---------EKMKDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHH---------HHHHHHHHH
Confidence 99999999998832 23322 2223322 345678999999999998875443 2221 222334445
Q ss_pred HHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 556 QFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 556 ~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
++++. +.+..+|..|...|...|++++|++.|++.++.|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55544 5578899999999999999999999999998865
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-14 Score=142.60 Aligned_cols=371 Identities=10% Similarity=-0.021 Sum_probs=243.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhc----CC---CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhC-----
Q 007329 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWV----GG---VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG----- 227 (608)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 227 (608)
....||.|...+...|++++|++.|++..+. .+ -+....+|+.+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999987642 10 12234578899999999999999999999887631
Q ss_pred -CC-CchhHHHHHHHHHHhc--CCHHHHHHHHccCCC---CCHhHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCC
Q 007329 228 -YE-ADVDVVNALITMYVKC--GDLVRARLVFDGMPK---RDRISWNAMISG---YFENGEYMKGLMLFIMMREVLVDPD 297 (608)
Q Consensus 228 -~~-~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~---~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~p~ 297 (608)
.. ....++..+..++.+. +++++|...|++..+ .++..+..+... +...++.++|++.+++..+... .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 11 1245566665566554 579999999998753 355566655554 4456788899999998877532 23
Q ss_pred hhHHHHHHHHHh----hcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHH
Q 007329 298 FMTLSSVISASE----LVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES--K-DVVSWTTM 370 (608)
Q Consensus 298 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 370 (608)
...+..+...+. ..++.++|.+.++...... +.+..++..+...|...|++++|...+++..+ | +...+..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 444544444443 3567889999999988875 55677888999999999999999999998765 3 45566666
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCI 450 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 450 (608)
..+|...+. ...... ...........+..+.|...++...+.. +.+...+..+...|.+.|++
T Consensus 288 g~~y~~~~~---------~~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 288 GCCYRAKVF---------QVMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHH---------HHHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHH---------HhhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 665533211 011110 0000001111233567788888777765 44566677888899999999
Q ss_pred HHHHHHHccCCC--CCcc----cHHHHHH-HHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 451 DKALEVFHQIPD--KNVI----SWTSIIL-GLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 451 ~~A~~~~~~~~~--~~~~----~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
++|.+.|++..+ ++.. .+..+.. .+.+.|+.++|++.|++.+ .+.|+..... +....+.++++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal-~i~~~~~~~~---------~~~~~l~~~~~ 420 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV-KINQKSREKE---------KMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-HSCCCCHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCcccHHHH---------HHHHHHHHHHH
Confidence 999999987652 3222 1222222 3457889999999999988 4445433222 22344556667
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
...+.++. +..+|..|+.+|...|++++|.+.|+++
T Consensus 421 ~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 421 MRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHCC--CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77766655 7889999999999999999999999988
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.9e-15 Score=135.71 Aligned_cols=235 Identities=11% Similarity=-0.072 Sum_probs=187.4
Q ss_pred hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--Cc----hhHHH
Q 007329 365 VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLI--SY----IIIAN 438 (608)
Q Consensus 365 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 438 (608)
..|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...++.+.+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677778888888888888888888776 67788888888888899999999888887764311 11 57778
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCG 518 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a 518 (608)
.+...|.+.|++++|.+.|++..+-+.. ...+...|++++|.+.++++....+.+...+..+...+...|++++|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 8888888999999999988877632111 24567778899999999998854455667888899999999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 519 KEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
...++++.+..+. +...+..++.+|.+.|++++|.+.++++ +.+...|..+...+...|++++|.+.+++..+..
T Consensus 159 ~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 159 VKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999987765 6778889999999999999999999988 4568889999999999999999999999998752
Q ss_pred ----CCCCch--hhhhccc
Q 007329 595 ----GNWRKL--MGLFRKC 607 (608)
Q Consensus 595 ----~~p~~~--~~~~~ac 607 (608)
..|+.. ...+..|
T Consensus 238 ~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 238 AEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHTTTTHHHHHHHHHHT
T ss_pred hhhcCCCchHHHHHHHHHh
Confidence 116655 4444444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=8.6e-13 Score=132.31 Aligned_cols=366 Identities=9% Similarity=-0.014 Sum_probs=219.3
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH---HHHHHHHccCCCCCHhHHHHHHHHHHhcC-----C
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL---VRARLVFDGMPKRDRISWNAMISGYFENG-----E 278 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~ 278 (608)
+.+.|++++|.++|+...+.| +...+..|...|...|+. ++|...|++..+.++..+..+...+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 334444555555555544443 122223333444445555 66666666665555555555555444444 5
Q ss_pred hhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCCh---hhHHHHHHHHHHhCCCCCcccchHHHHHHHhcC----ChHH
Q 007329 279 YMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDE---KLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFG----NREE 351 (608)
Q Consensus 279 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~ 351 (608)
+++|+..|++..+.|... .+..+...|...+.. ..+.+.+......| +......+...|...+ ..+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 667777777777765332 344444444433322 34555555555554 3455666777777776 3455
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHcCC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHH
Q 007329 352 GEKVFSRMESKDVVSWTTMISCYEGSV---LPDKAVETYQMMEAEGSMPDEITIASVLSACACL----GNLDLGIKLHQL 424 (608)
Q Consensus 352 a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~ 424 (608)
+..+++.....+...+..+...|...| +.++|+..|++..+.| .++...+..+...|... +++++|..+|+.
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 556666666666668888888888888 8889999999888887 44555556666666554 688899998888
Q ss_pred HHHhCCCCchhHHHHHHHH-h--HhcCCHHHHHHHHccCCCC-CcccHHHHHHHHHhCC-----CchHHHHHHHHhHhCC
Q 007329 425 AMRTGLISYIIIANTLIDM-Y--SKCKCIDKALEVFHQIPDK-NVISWTSIILGLRLNN-----RSFEALIFFRKMMLNL 495 (608)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~-----~~~~A~~~~~~m~~~~ 495 (608)
.. . -+...+..|..+ | ...++.++|.+.|++..+. +...+..+...|. .| ++++|++.|++..
T Consensus 243 aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 243 IA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp HG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred Hc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---
Confidence 76 3 344555566655 3 4578999999999877643 5566777777776 44 8889999998875
Q ss_pred CCCHHHHHHHHHHHhc----cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cCCHHHHHHHHHhc--CCCHH
Q 007329 496 KPNSVTLVSILSACAR----IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CGRMKPAWNQFNSN--ERDVS 565 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~~~ 565 (608)
+-+...+..|...|.. ..++++|...+++..+.| +......|..+|.. ..+.++|...++.. ..+..
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 5567777777777766 348999999999988876 45566677777764 45899999999888 33333
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHHHHHc
Q 007329 566 AWNILLTG--YAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 566 ~~~~l~~~--~~~~g~~~~A~~~~~~m~~~ 593 (608)
.-..+-.. ....++.++|..+.++..+.
T Consensus 392 a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 392 ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 33333222 23344667788887776554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-14 Score=125.67 Aligned_cols=204 Identities=13% Similarity=0.008 Sum_probs=120.6
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++...+.. +.+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445555556666666666666666665543 1234555555555666666666666666555544 3334444444444
Q ss_pred hHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
+.+.+.. . .. .+...|++++|+..|++.+...+-+...+..+..++...|++++|...++
T Consensus 83 ~~~~~~~---------~--~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 83 YVALYRQ---------A--ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp HHHHHHT---------C--SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhhh---------h--hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4433000 0 00 01112777888888887774444567777788888888888888888888
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
++.+.. .++..+..+..+|...|++++|...++++ +.+...+..+...+...|++++|.+.+++..
T Consensus 143 ~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 143 QALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888777 47777788888888888888888888877 4467778888888888888888888887654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-13 Score=133.52 Aligned_cols=182 Identities=12% Similarity=-0.035 Sum_probs=93.3
Q ss_pred HHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCCh---hhHHHHHcccCCCCcchHHHHHHHHHhcC---
Q 007329 102 VRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDL---GHAWYVFGKMCDRDLFSWNVLIGGYAKAG--- 175 (608)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g--- 175 (608)
...+.+.|++++|.+++....+.|. ...+..|...|...|+. ++|...|++..+.+...+..|...+...|
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~ 86 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGAT 86 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Confidence 3444556666677776666666542 23334455555556666 78888888776556667777777555554
Q ss_pred --ChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCCh---hhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---
Q 007329 176 --FFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDL---KRGKEVHVHVIRFGYEADVDVVNALITMYVKCGD--- 247 (608)
Q Consensus 176 --~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--- 247 (608)
++++|+++|++..+.+ .++ .+..+...|...+.. ..+.+.+......| +......+...|...+.
T Consensus 87 ~~~~~~A~~~~~~Aa~~g--~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 87 EAEHHEAESLLKKAFANG--EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHTT--CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CcCHHHHHHHHHHHHHCC--CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 6778888888888765 232 555565555544433 34555555555554 34555666667766663
Q ss_pred -HHHHHHHHccCCCCCHhHHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 007329 248 -LVRARLVFDGMPKRDRISWNAMISGYFENG---EYMKGLMLFIMMREVL 293 (608)
Q Consensus 248 -~~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~ 293 (608)
.+.+..+++.....++..+..+...|.+.| +.++|++.|++..+.|
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 444445555555555566666777776666 6666666666666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.9e-13 Score=122.99 Aligned_cols=224 Identities=11% Similarity=-0.009 Sum_probs=133.7
Q ss_pred chHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 007329 336 CNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD--EITIASVLSACA 410 (608)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 410 (608)
+......+...|++++|...|++..+ .+...+..+..+|...|++++|+..+++..+.+..|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33445555666666666666665533 2334566666677777777777777777766332222 334667777777
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHH
Q 007329 411 CLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIF 487 (608)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 487 (608)
..|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|++..+. +...|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888777777655 445567777777777788888888877776642 334455555233334477777777
Q ss_pred HHHhHhCCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhC-CCCCc------cHHHHHHHHhHhcCCHHHHHHHH
Q 007329 488 FRKMMLNLKPNSVTLVSILSACARIGA---LMCGKEIHAHALRIG-VAFDG------FLPNALLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 488 ~~~m~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~p~~------~~~~~l~~~~~~~g~~~~A~~~~ 557 (608)
|+++....+.+...+..+..++...|+ +++|...++++.+.. ..|+. ..|..+...|.+.|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777764344445566666666666665 666666666665432 11221 24444555555555555555555
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
+++
T Consensus 245 ~~a 247 (272)
T 3u4t_A 245 KNI 247 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=121.00 Aligned_cols=201 Identities=9% Similarity=-0.063 Sum_probs=128.6
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...|..+...+...|++++|...|+++.+.. ..+...+..+...+...|++++|.+.++.+.+.. +.+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~------- 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARV------- 107 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHH-------
Confidence 3456666666667777777777776666543 2245556666666666666666666666665543 223334
Q ss_pred hHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMML--NLKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
|..+...+...|++++|+++++++.. ..+.+...+..+...+...|++++|.+.
T Consensus 108 ------------------------~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 108 ------------------------LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------------HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444455555555555555555552 2222445666666777777777777777
Q ss_pred HHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007329 522 HAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNW 597 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 597 (608)
++++.+..+. +...+..++..|...|++++|.+.++++ +.+...+..+...+...|++++|.++++++.+. .|
T Consensus 164 ~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p 240 (252)
T 2ho1_A 164 FEKSLRLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YP 240 (252)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CC
Confidence 7777766543 4566677777788888888888888776 445667777777888888888888888888775 55
Q ss_pred Cch
Q 007329 598 RKL 600 (608)
Q Consensus 598 ~~~ 600 (608)
+..
T Consensus 241 ~~~ 243 (252)
T 2ho1_A 241 GSL 243 (252)
T ss_dssp TSH
T ss_pred CCH
Confidence 544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-13 Score=124.53 Aligned_cols=225 Identities=11% Similarity=-0.015 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCC--CCcccchHHHHH
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFS--DDVSVCNPLIKM 342 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 342 (608)
.|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...++.+.+.... ++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--------- 75 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY--------- 75 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH---------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch---------
Confidence 44455555555555555555555555443 34444444444444445555544444444332100 000
Q ss_pred HHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 007329 343 YLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLH 422 (608)
Q Consensus 343 ~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 422 (608)
. .....|..+...|...|++++|...|++.... .|+. ..+...|+++.|...+
T Consensus 76 -------~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 76 -------K-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------H-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------H-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 0 00234555555566666666666666665553 2332 2233444555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHH
Q 007329 423 QLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTL 502 (608)
Q Consensus 423 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~ 502 (608)
+.+.+.. +.+... |..+...+...|++++|+..|++.....+.+..++
T Consensus 129 ~~~~~~~-~~~~~~-------------------------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 176 (258)
T 3uq3_A 129 EAEAYVN-PEKAEE-------------------------------ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY 176 (258)
T ss_dssp HHHHHCC-HHHHHH-------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcC-cchHHH-------------------------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHH
Confidence 5544432 222233 33444444444555555555555442233344555
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..+...+...|++++|...++++.+..+. +...+..+..+|.+.|++++|.+.++++
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555555555555554432 3444555555555555555555555554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=8e-13 Score=123.29 Aligned_cols=231 Identities=9% Similarity=-0.077 Sum_probs=188.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISY--IIIANTLIDM 443 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~ 443 (608)
.+......+...|++++|+..|++..+... .+...+..+...+...|++++|...++.+.+....++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 445567788999999999999999998742 2445788888899999999999999999987432222 2347889999
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKE 520 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 520 (608)
|...|++++|.+.|++..+ .+...|..+...+...|++++|++.|++.....+.+...+..+...+...+++++|.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998763 4567899999999999999999999999984455567777777734555569999999
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHhHhcCC---HHHHHHHHHhc------CCC------HHHHHHHHHHHHhcCCHHHHHH
Q 007329 521 IHAHALRIGVAFDGFLPNALLDMYVRCGR---MKPAWNQFNSN------ERD------VSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~------~~~------~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
.++++.+..+. +...+..+..++...|+ +++|...++++ .|+ ..+|..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999987655 46777778888988888 88888888776 244 2578889999999999999999
Q ss_pred HHHHHHHcCCCCCch
Q 007329 586 FFRKMIDSKGNWRKL 600 (608)
Q Consensus 586 ~~~~m~~~g~~p~~~ 600 (608)
.+++..+. .|++.
T Consensus 243 ~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 243 AWKNILAL--DPTNK 255 (272)
T ss_dssp HHHHHHHH--CTTCH
T ss_pred HHHHHHhc--CccHH
Confidence 99999986 77766
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.4e-13 Score=119.51 Aligned_cols=196 Identities=14% Similarity=-0.022 Sum_probs=131.9
Q ss_pred CCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007329 330 SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVL 406 (608)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 406 (608)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56777888999999999999999999998765 466788889999999999999999999999864 22566777777
Q ss_pred HHHHcc-----------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHH
Q 007329 407 SACACL-----------GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGL 475 (608)
Q Consensus 407 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 475 (608)
..+... |++++|...++...+.. +. +...|..+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~-------------------------------~~~~~~~lg~~~ 128 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PR-------------------------------YAPLHLQRGLVY 128 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TT-------------------------------CHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cc-------------------------------cHHHHHHHHHHH
Confidence 777776 55555555555554433 12 234455555666
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
...|++++|+..|++.++-. .+...+..+..++...|++++|...++++.+..+. +...+..+..++.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------
T ss_pred HHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHH
Confidence 66666667777777766222 66677777777777778888887777777776554 55666777777778888888877
Q ss_pred HHHhc
Q 007329 556 QFNSN 560 (608)
Q Consensus 556 ~~~~~ 560 (608)
.+++.
T Consensus 207 ~~~~~ 211 (217)
T 2pl2_A 207 AAALE 211 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 77664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=116.41 Aligned_cols=196 Identities=13% Similarity=-0.000 Sum_probs=130.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHh
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRL 477 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 477 (608)
.+..+...+...|+++.|.+.++.+.+.. +.+...+..+...|...|++++|.+.++++. ..+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444445555555555555444433 2234444555555555555555555555443 1234455666667777
Q ss_pred C-CCchHHHHHHHHhHh--CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 478 N-NRSFEALIFFRKMML--NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 478 ~-~~~~~A~~~~~~m~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
. |++++|+..++++.. ..+.+...+..+...+...|++++|...++++.+..+. +...+..++.+|.+.|++++|.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHH
Confidence 7 777777777777773 22333567777788888888888888888888876544 5667778888888888888888
Q ss_pred HHHHhc----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 555 NQFNSN----E-RDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 555 ~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.++++ + .+...+..+...+...|+.+.|..+++.+.+. .|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~ 216 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSE 216 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCH
Confidence 888887 4 57777877888888889999998888888765 56655
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-14 Score=130.32 Aligned_cols=219 Identities=10% Similarity=-0.116 Sum_probs=102.9
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 34444555555555555555555555432 1234455555555555555555555555555443 223444555555555
Q ss_pred hcCCHHHHHHHHccCC--CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIP--DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
+.|++++|.+.|+++. .|+.......+..+...|++++|...+++.....+++...+. ++..+...++.++|.+.++
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLK 201 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHH
Confidence 5555555555555443 222222222333334445555555555555522333333322 4444445555555555555
Q ss_pred HHHHhCCCC---CccHHHHHHHHhHhcCCHHHHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 524 HALRIGVAF---DGFLPNALLDMYVRCGRMKPAWNQFNSN-ERDVSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 524 ~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
.+.+..... +...+..++.+|.+.|++++|.+.++++ .-++..+.....++...|++++|++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 544322110 1344555566666666666666666655 222222233344455555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-13 Score=122.74 Aligned_cols=199 Identities=14% Similarity=0.043 Sum_probs=113.5
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
.|..+...+...|++++|...|+++.+.. ..+...+..+...+...|++++|...++.+.+.. +.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~------------- 89 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SS------------- 89 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-------------
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cc-------------
Confidence 44444555555555666665555555432 2234445555555555555555555555554432 22
Q ss_pred hcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 525 (608)
+...+..+...+...|++++|++.++++....+.+...+..+...+...|++++|.+.++++
T Consensus 90 ------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 90 ------------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33445555555666666666666666666333445666666777777777777777777777
Q ss_pred HHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 526 LRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 526 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+..+. +...+..++..|.+.|++++|.+.++++ +.+..+|..+...|...|++++|.+.++++.+. .|+..
T Consensus 152 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 227 (243)
T 2q7f_A 152 VELNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHM 227 (243)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchH
Confidence 665443 4556667777777777777777777776 445667777777777788888888888877764 55554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-11 Score=115.87 Aligned_cols=225 Identities=13% Similarity=-0.049 Sum_probs=169.7
Q ss_pred ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 007329 363 DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC----LGNLDLGIKLHQLAMRTGLISYIIIAN 438 (608)
Q Consensus 363 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (608)
+...+..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455566666777777777777777777632 45566666677777 777777777777777665 556666
Q ss_pred HHHHHhHh----cCCHHHHHHHHccCCC-CCcccHHHHHHHHHh----CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 439 TLIDMYSK----CKCIDKALEVFHQIPD-KNVISWTSIILGLRL----NNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 439 ~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
.+...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|++.|++..... +...+..+...+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 156 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 67777777 7788888877776653 355667777777887 888888888888887322 566677777777
Q ss_pred hc----cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cCCHHHHHHHHHhc--CCCHHHHHHHHHHHHh---
Q 007329 510 AR----IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CGRMKPAWNQFNSN--ERDVSAWNILLTGYAE--- 576 (608)
Q Consensus 510 ~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~--- 576 (608)
.. .+++++|...++++.+.+ +...+..+..+|.. .+++++|.+.+++. ..+...+..+...|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~ 233 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEG 233 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 77 889999999999988765 45677788888988 99999999999988 4557788888899988
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCch
Q 007329 577 -RGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 577 -~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+++++|.+++++..+. .|+..
T Consensus 234 ~~~~~~~A~~~~~~a~~~--~~~~a 256 (273)
T 1ouv_A 234 VTRNEKQAIENFKKGCKL--GAKGA 256 (273)
T ss_dssp SSCCSTTHHHHHHHHHHH--TCHHH
T ss_pred cccCHHHHHHHHHHHHHc--CCHHH
Confidence 89999999999999887 34443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-12 Score=117.28 Aligned_cols=196 Identities=12% Similarity=-0.010 Sum_probs=141.4
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSAC 409 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 409 (608)
...+..+...+...|++++|...|+++.+ .+...+..+...|...|++++|.+.++++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56778889999999999999999998764 467788899999999999999999999998864 23677888888999
Q ss_pred HccCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHH
Q 007329 410 ACLGNLDLGIKLHQLAMRTGLIS-YIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEAL 485 (608)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 485 (608)
...|++++|.++++.+.+.+..| +...+..+...|.+.|++++|.+.|+++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999887622223 455666666677777777777777766542 23445555666666666666666
Q ss_pred HHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 007329 486 IFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 486 ~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (608)
..++++....+.+...+..+...+...|++++|.++++++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 66666653334445555555555566666666666666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-12 Score=125.69 Aligned_cols=232 Identities=9% Similarity=-0.035 Sum_probs=192.8
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGN-LDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
...|+.+...+.+.|++++|+..+++..... .-+...|..+...+...|+ +++|+..++.+++.. +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567778888899999999999999998864 2256778888888999996 999999999999877 557788888999
Q ss_pred HhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc-cCcHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACAR-IGALMCG 518 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~-~~~~~~a 518 (608)
++.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|++++...+-+...|+.+..++.. .|..++|
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999998773 4667899999999999999999999999995556678899999999988 5665777
Q ss_pred -----HHHHHHHHHhCCCCCccHHHHHHHHhHhcC--CHHHHHHHHHhc---CCCHHHHHHHHHHHHhcC---------C
Q 007329 519 -----KEIHAHALRIGVAFDGFLPNALLDMYVRCG--RMKPAWNQFNSN---ERDVSAWNILLTGYAERG---------Q 579 (608)
Q Consensus 519 -----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g---------~ 579 (608)
++.++++++..+. +...|..+..+|...| ++++|.+.+.++ +.+...+..++..|...| .
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 5889999887766 6778888999999888 689999988887 446788999999998874 2
Q ss_pred HHHHHHHHHHH-HHcCCCCCch
Q 007329 580 GALAEEFFRKM-IDSKGNWRKL 600 (608)
Q Consensus 580 ~~~A~~~~~~m-~~~g~~p~~~ 600 (608)
.++|.++++++ .+ +.|...
T Consensus 334 ~~~A~~~~~~l~~~--~DP~r~ 353 (382)
T 2h6f_A 334 LNKALELCEILAKE--KDTIRK 353 (382)
T ss_dssp HHHHHHHHHHHHHT--TCGGGH
T ss_pred HHHHHHHHHHHHHH--hCchhH
Confidence 58999999998 55 466554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-13 Score=120.92 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=121.6
Q ss_pred CCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007329 330 SDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVL 406 (608)
Q Consensus 330 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 406 (608)
......+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. ..+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34566788889999999999999999998865 467788889999999999999999999998864 33678888889
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchH
Q 007329 407 SACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFE 483 (608)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 483 (608)
..+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++++. ..+...+..+...+.+.|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999988765 4455566666666777777777766666544 1234445555555555555555
Q ss_pred HHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 007329 484 ALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 484 A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (608)
|++.++++....+.+..++..+..++...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 5555555553333344455555555555555555555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-12 Score=114.30 Aligned_cols=195 Identities=8% Similarity=-0.103 Sum_probs=150.1
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 4456667777777888888888888777653 2346677777777888888888888888777765 4456677778888
Q ss_pred hHhc-CCHHHHHHHHccCCC--CC---cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH
Q 007329 444 YSKC-KCIDKALEVFHQIPD--KN---VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC 517 (608)
Q Consensus 444 ~~~~-g~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~ 517 (608)
+... |++++|.+.++++.+ .+ ...|..+...+...|++++|+..++++....+.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 8888 888888888877654 22 35677788888888999999999988884445567888888889999999999
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 518 GKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 518 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|..+++++.+..+..+...+..+...+...|+.++|..+++.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999998887765236667777788888899999998888886
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=121.47 Aligned_cols=213 Identities=10% Similarity=-0.091 Sum_probs=126.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCC---ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHH
Q 007329 275 ENGEYMKGLMLFIMMREVLVDP---DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREE 351 (608)
Q Consensus 275 ~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (608)
..|++++|+..++++.+..... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3466777777777776653211 24456666666777777777777777776664 3455666667777777777777
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh
Q 007329 352 GEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRT 428 (608)
Q Consensus 352 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 428 (608)
|.+.|++..+ .+...|..+...|...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777766654 34566777777777777777777777777764 344444444444555667777777777666654
Q ss_pred CCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCC-------cccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 429 GLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKN-------VISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 429 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
. +++...+. ++..+...++.++|.+.+++..+.+ ...|..+...+.+.|++++|...|++..
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 33333332 4445555556666666666554321 1333444444444444444444444444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-10 Score=116.75 Aligned_cols=412 Identities=10% Similarity=-0.006 Sum_probs=270.4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCC---hhhHHHHHHHHHHhC-CCCchhH
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPD---LKRGKEVHVHVIRFG-YEADVDV 234 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~ 234 (608)
.|..+|..++..+.+.+.++.+..+|+++.... +.....|..-+..-.+.++ ++.+.++|+..+... ..|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 478899999999999999999999999999763 6666777777888788888 999999999988764 2478888
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHccCC------C-CCHhHHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 007329 235 VNALITMYVKCGDL--------VRARLVFDGMP------K-RDRISWNAMISGYFE---------NGEYMKGLMLFIMMR 290 (608)
Q Consensus 235 ~~~li~~~~~~g~~--------~~A~~~~~~~~------~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~ 290 (608)
|...+....+.++. +...++|+... . .+...|...+..... .++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766665543 23345665421 1 245677777765432 334667778888777
Q ss_pred HCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhh-------CCC--
Q 007329 291 EVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR-------MES-- 361 (608)
Q Consensus 291 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~-- 361 (608)
......-..+|......-...+ ...+.+++.+.. .+++.|...+.+ +..
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVN-QLTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred hCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhcc
Confidence 5321111223322211111111 111222221110 111222222211 100
Q ss_pred ------------C--C------hhhHHHHHHHHHcCCC-------chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007329 362 ------------K--D------VVSWTTMISCYEGSVL-------PDKAVETYQMMEAEGSMPDEITIASVLSACACLGN 414 (608)
Q Consensus 362 ------------~--~------~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 414 (608)
| + ...|...+.---..+. .+.+..+|++....- .-....|...+.-+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 0 0 1234444433222221 123456677776652 3366777777777788888
Q ss_pred hHHHH-HHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-------------CC------------cccH
Q 007329 415 LDLGI-KLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD-------------KN------------VISW 468 (608)
Q Consensus 415 ~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~ 468 (608)
.+.|. .+++...... +.+...+-.++....+.|++++|.++|+++.+ |+ ...|
T Consensus 359 ~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88896 9999888654 55667777888888899999999999988763 21 2357
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhC-CCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLN-LKPNSVTLVSILSACARI-GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~-~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
...+....+.|+.+.|..+|.+.+.. .......|...+..-.+. ++.+.|..+|+..++.-+ -++..+...++....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHh
Confidence 77888888889999999999999843 222334444333333333 569999999999987633 356677788898889
Q ss_pred cCCHHHHHHHHHhc---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 547 CGRMKPAWNQFNSN---ER----DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 547 ~g~~~~A~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
.|+.+.|..+|+++ .| ....|...+..-...|+.+.+..+.+++.+. .|++
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 99999999999998 33 3468999999889999999999999999987 5553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=129.94 Aligned_cols=287 Identities=14% Similarity=0.046 Sum_probs=163.6
Q ss_pred CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhhcCChhhHHHHHHHHHHhC----CCC-C
Q 007329 262 DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPD----FMTLSSVISASELVGDEKLGREVHGYVIKMG----FSD-D 332 (608)
Q Consensus 262 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 332 (608)
....+......+...|++++|...|++..+.+.. + ...+..+...+...|++++|...++.+.+.. ..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445556666777777777777777777665211 2 2345555666666677777777666654321 000 1
Q ss_pred cccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 007329 333 VSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGS-MPD----EITIASVLS 407 (608)
Q Consensus 333 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~ 407 (608)
..++..+...|...|++++|...+ ++..+... .++ ..++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCC-------------------------------QRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH-------------------------------HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHH-------------------------------HHHHHHHHhcccccchHHHHHHHHH
Confidence 223344444444555555555444 44332100 001 224444445
Q ss_pred HHHccCC--------------------hHHHHHHHHHHHHh----CC-CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC
Q 007329 408 ACACLGN--------------------LDLGIKLHQLAMRT----GL-ISYIIIANTLIDMYSKCKCIDKALEVFHQIPD 462 (608)
Q Consensus 408 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 462 (608)
.+...|+ ++.|...++...+. +. .....++..+...|...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 55555555544321 10 11123455556666666666666666665441
Q ss_pred -----CC----cccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 463 -----KN----VISWTSIILGLRLNNRSFEALIFFRKMML--NLKPN----SVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 463 -----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
++ ...|..+...+...|++++|...+++... ...++ ..++..+...+...|++++|...++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11 12566677777777888888877777761 11111 44667777888888888888888887765
Q ss_pred hCCCC-C----ccHHHHHHHHhHhcCCHHHHHHHHHhc------CCC----HHHHHHHHHHHHhcCCH
Q 007329 528 IGVAF-D----GFLPNALLDMYVRCGRMKPAWNQFNSN------ERD----VSAWNILLTGYAERGQG 580 (608)
Q Consensus 528 ~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~----~~~~~~l~~~~~~~g~~ 580 (608)
..... + ..++..+..+|.+.|++++|.+.++++ ..+ ..++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 42221 1 446667888888888888888888776 111 44666777777777765
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-11 Score=120.00 Aligned_cols=148 Identities=7% Similarity=-0.039 Sum_probs=69.0
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-ChhHHHHHHHHHhhcCC-hhhHHHHHHHHHHhCCCCCcccchHHH
Q 007329 263 RISWNAMISGYFENGEYMKGLMLFIMMREVLVDP-DFMTLSSVISASELVGD-EKLGREVHGYVIKMGFSDDVSVCNPLI 340 (608)
Q Consensus 263 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 340 (608)
...|+.+...+.+.|++++|++.+++.... .| +...|..+...+...|+ +++|...++.+++.. +.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~------- 166 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNY------- 166 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCH-------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCH-------
Confidence 445666666666666666666666666553 22 23334444444444443 455554444444432 2233
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 007329 341 KMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIK 420 (608)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 420 (608)
..|+.+..++...|++++|+..|+++.+... -+...|..+..++...|++++|+.
T Consensus 167 ------------------------~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 167 ------------------------QVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp ------------------------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred ------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHH
Confidence 3344444444444444444444444444321 133444444444444455555555
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhHh
Q 007329 421 LHQLAMRTGLISYIIIANTLIDMYSK 446 (608)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (608)
.++.+++.. +.+...|+.+..++.+
T Consensus 222 ~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 222 YVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 554444443 2233344444444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.9e-13 Score=131.24 Aligned_cols=265 Identities=12% Similarity=0.065 Sum_probs=155.5
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCc----ccchHHHHHHHhcCChHHHHHHHhhCCC---------CChhh
Q 007329 300 TLSSVISASELVGDEKLGREVHGYVIKMGFSDDV----SVCNPLIKMYLSFGNREEGEKVFSRMES---------KDVVS 366 (608)
Q Consensus 300 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~ 366 (608)
.+..+...+...|++++|...++.+.+.+ +.+. .++..+...|...|++++|...+++..+ .....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445566777888888888888887763 2222 3566677777777777777777665532 12234
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCC-----------------hHHHHHHHHH
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAE----GSMP-DEITIASVLSACACLGN-----------------LDLGIKLHQL 424 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~-----------------~~~a~~~~~~ 424 (608)
+..+...|...|++++|...+++..+. +-.| ...++..+...+...|+ ++.|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 555555666666666666666665432 1001 12244444455555555 4444444443
Q ss_pred HHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC--CcccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC--
Q 007329 425 AMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK--NVISWTSIILGLRLNNRSFEALIFFRKMML--NLKPN-- 498 (608)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~-- 498 (608)
..+. ......+ ....+..+...+...|++++|++.+++... ...++
T Consensus 209 al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 209 NLKL----------------------------MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHH----------------------------HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 3221 0000000 112455556666666666666666666651 10111
Q ss_pred --HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-----CccHHHHHHHHhHhcCCHHHHHHHHHhc------CCC--
Q 007329 499 --SVTLVSILSACARIGALMCGKEIHAHALRIGVAF-----DGFLPNALLDMYVRCGRMKPAWNQFNSN------ERD-- 563 (608)
Q Consensus 499 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~-- 563 (608)
..++..+...+...|++++|...++++.+..... ...++..+..+|...|++++|.+.++++ ..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 2256667777777778887777777766432211 1345666777788888888888888776 112
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 564 --VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 564 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..++..+...|...|++++|.+.+++..+.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346777778888888888888888877654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=9.5e-12 Score=108.25 Aligned_cols=165 Identities=14% Similarity=0.092 Sum_probs=124.4
Q ss_pred chhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHH
Q 007329 433 YIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSAC 509 (608)
Q Consensus 433 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~ 509 (608)
+..+|..+...|.+.|++++|++.|++..+ .++..|..+..+|.+.|++++|+..++......+.+...+..+...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 344556666666666666666666665542 24456666777777777777777777777744555667777777888
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007329 510 ARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 510 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
...++++.+.+.+.++.+..+. +...+..++.+|.+.|++++|.+.|+++ +.+..+|..+...|...|++++|.+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888888877655 6677888888899999999999999887 4567888999999999999999999
Q ss_pred HHHHHHHcCCCCCch
Q 007329 586 FFRKMIDSKGNWRKL 600 (608)
Q Consensus 586 ~~~~m~~~g~~p~~~ 600 (608)
.|++.++. .|+..
T Consensus 163 ~~~~al~~--~p~~a 175 (184)
T 3vtx_A 163 YFKKALEK--EEKKA 175 (184)
T ss_dssp HHHHHHHT--THHHH
T ss_pred HHHHHHhC--CccCH
Confidence 99998874 66654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=7e-11 Score=110.11 Aligned_cols=222 Identities=11% Similarity=0.023 Sum_probs=122.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcC----CCChhhHHHHHHHHHHhCCCCchhHH
Q 007329 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGG----VPDLKRGKEVHVHVIRFGYEADVDVV 235 (608)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 235 (608)
+..++..+...+...|++++|++.|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44556666666777777777777777766522 33445555555555 666666666666666554 44455
Q ss_pred HHHHHHHHh----cCCHHHHHHHHccCCCC-CHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCChhHHHHHHH
Q 007329 236 NALITMYVK----CGDLVRARLVFDGMPKR-DRISWNAMISGYFE----NGEYMKGLMLFIMMREVLVDPDFMTLSSVIS 306 (608)
Q Consensus 236 ~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 306 (608)
..+...|.. .+++++|.+.|++..+. +...+..+...|.. .+++++|+..|++..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~--------------- 142 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--------------- 142 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh---------------
Confidence 555555555 55555555555443322 33444444444444 4444444444444444
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHc----C
Q 007329 307 ASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLS----FGNREEGEKVFSRMES-KDVVSWTTMISCYEG----S 377 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~ 377 (608)
.+ +...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .
T Consensus 143 --------------------~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 143 --------------------LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp --------------------TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred --------------------cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 32 22333334444444 4455555555544432 233445555556666 6
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhC
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIASVLSACAC----LGNLDLGIKLHQLAMRTG 429 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 429 (608)
+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.++...+.+
T Consensus 200 ~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66777777777666654 24555566666666 677777777777666655
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.1e-12 Score=125.71 Aligned_cols=207 Identities=11% Similarity=-0.061 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 381 DKAVETYQMMEAEGSMPDEITIASVLSACACLGNL-DLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
++++..+++..... ..+...+..+...+...|++ ++|++.++.+.+.. +.+...+..+..+|.+.|++++|.+.|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444443322 22455555566666666666 66666666666554 33455666666666666666666666665
Q ss_pred CC--CCCcccHHHHHHHHHhC---------CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc--------CcHHHHHH
Q 007329 460 IP--DKNVISWTSIILGLRLN---------NRSFEALIFFRKMMLNLKPNSVTLVSILSACARI--------GALMCGKE 520 (608)
Q Consensus 460 ~~--~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~--------~~~~~a~~ 520 (608)
.. .|+...|..+...+... |++++|++.|++.....+.+...|..+..++... |++++|.+
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 54 24445555666666666 7777788888777744455677777777777777 78888888
Q ss_pred HHHHHHHhCCC--CCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007329 521 IHAHALRIGVA--FDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRK 589 (608)
Q Consensus 521 ~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 589 (608)
.++++.+..+. -+...|..+..+|...|++++|.+.|+++ +.+...|..+...+...|++++|.+.+++
T Consensus 243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888876541 26677777888888888888888888877 44566778888888888888888765443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-09 Score=111.23 Aligned_cols=128 Identities=9% Similarity=-0.026 Sum_probs=56.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc-CCHHHHHHHHccCCC---CCcccHHHHHHHHHh
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC-KCIDKALEVFHQIPD---KNVISWTSIILGLRL 477 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 477 (608)
|...+....+.|+.+.|..+|..+.+.-......+|...+..-.+. ++.+.|.++|+...+ .+...|...+.....
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 4444444444555555555555554430011122222222222222 235555555554432 233344444444445
Q ss_pred CCCchHHHHHHHHhHhCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 007329 478 NNRSFEALIFFRKMMLNLKP---NSVTLVSILSACARIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (608)
.|+.+.|..+|++.+...++ ....|...+..-.+.|+.+.+..+.+++.+.-
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 55555555555555522221 22344444444445555555666665555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=120.72 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=164.3
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC------CchhHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAEG-SMPD----EITIASVLSACACLGNLDLGIKLHQLAMRTGLI------SYIIIAN 438 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 438 (608)
....+...|++++|+..+++..+.- -.++ ..++..+...+...|+++.|...+....+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3445667788888888887776531 0122 345667777777888888888888776653111 1134667
Q ss_pred HHHHHhHhcCCHHHHHHHHccCCC-----CCc----ccHHHHHHHHHhCCCchHHHHHHHHhHh-----CC-CCCHHHHH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIPD-----KNV----ISWTSIILGLRLNNRSFEALIFFRKMML-----NL-KPNSVTLV 503 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~-~p~~~~~~ 503 (608)
.+...|...|++++|.+.|++..+ ++. .++..+...|...|++++|++.+++... +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888876652 111 3677888899999999999999999883 44 33466788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCC----CCCccHHHHHHHHhHhcCC---HHHHHHHHHhcC---CCHHHHHHHHHH
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGV----AFDGFLPNALLDMYVRCGR---MKPAWNQFNSNE---RDVSAWNILLTG 573 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~l~~~ 573 (608)
.+...+...|++++|...++++.+... ......+..+...|...|+ +++|..++++.. .....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 899999999999999999998875421 1112335678888999999 899999999882 234577889999
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 007329 574 YAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 574 ~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...|++++|.+.+++..+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-12 Score=121.56 Aligned_cols=264 Identities=13% Similarity=0.081 Sum_probs=162.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHhCCCCC----cccchHHHHHHHhcCChHHHHHHHhhCCC-----C----ChhhH
Q 007329 301 LSSVISASELVGDEKLGREVHGYVIKMGFSDD----VSVCNPLIKMYLSFGNREEGEKVFSRMES-----K----DVVSW 367 (608)
Q Consensus 301 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~ 367 (608)
+......+...|++++|...++.+.+.. +.+ ...+..+...+...|++++|...+++..+ . ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556677888888888888887763 222 24566667777777777777777665432 1 12345
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCC--------------------hHHHHHHH
Q 007329 368 TTMISCYEGSVLPDKAVETYQMMEAEGS-MPD----EITIASVLSACACLGN--------------------LDLGIKLH 422 (608)
Q Consensus 368 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~~ 422 (608)
..+...|...|++++|...+++..+... .++ ..++..+...+...|+ ++.|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 5555566666666666666655443210 011 1234444444445555 44444444
Q ss_pred HHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC--CcccHHHHHHHHHhCCCchHHHHHHHHhH--hCCCCC
Q 007329 423 QLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK--NVISWTSIILGLRLNNRSFEALIFFRKMM--LNLKPN 498 (608)
Q Consensus 423 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~~~~p~ 498 (608)
+...+. ......+ ....+..+...+...|++++|.+.+++.. ....++
T Consensus 167 ~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 167 EENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp HHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 332211 0000000 12345566667777777777777777766 111111
Q ss_pred ----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-C----ccHHHHHHHHhHhcCCHHHHHHHHHhc------CCC
Q 007329 499 ----SVTLVSILSACARIGALMCGKEIHAHALRIGVAF-D----GFLPNALLDMYVRCGRMKPAWNQFNSN------ERD 563 (608)
Q Consensus 499 ----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~ 563 (608)
..++..+...+...|++++|...++++.+..... + ..++..+...|...|++++|.+.++++ ..+
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 2367777888888899999988888876542221 1 456677888899999999999999877 122
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 564 ----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 564 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..++..+...|...|++++|.+.+++..+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 447788999999999999999999999874
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=127.35 Aligned_cols=270 Identities=13% Similarity=0.080 Sum_probs=178.2
Q ss_pred HhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh----hHHHHHHHHHhhcCChhhHHHHHHHHHHhC-----CCCCc
Q 007329 263 RISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF----MTLSSVISASELVGDEKLGREVHGYVIKMG-----FSDDV 333 (608)
Q Consensus 263 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ 333 (608)
...+..+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...+++..+.. .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778899999999999999999886322 22 467788888999999999999999987641 12234
Q ss_pred ccchHHHHHHHhcCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHcCCC-----------------chHHHHHH
Q 007329 334 SVCNPLIKMYLSFGNREEGEKVFSRMES-----K----DVVSWTTMISCYEGSVL-----------------PDKAVETY 387 (608)
Q Consensus 334 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~-----------------~~~a~~~~ 387 (608)
.++..+...|...|++++|...+++..+ . ....+..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6778889999999999999999988754 1 23467788889999999 88888888
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 007329 388 QMMEAE----GSMP-DEITIASVLSACACLGNLDLGIKLHQLAMRTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 388 ~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 461 (608)
++..+. +..+ ....+..+...+...|++++|...+++..+.... .+.. .
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------~--------- 261 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA----------------A--------- 261 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------H---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------H---------
Confidence 776542 1111 1235555666666777777777776665542100 0000 0
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHhH---hCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC---
Q 007329 462 DKNVISWTSIILGLRLNNRSFEALIFFRKMM---LNLK---PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF--- 532 (608)
Q Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--- 532 (608)
....+..+...|...|++++|++.+++.. .... ....++..+...+...|++++|.+.++++.+.....
T Consensus 262 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 262 --ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp --HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred --HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 01134445555555566666666655554 1111 113456666777777777777777777666432111
Q ss_pred --CccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 533 --DGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 533 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
....+..+..+|.+.|++++|.+.++++
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1335667778888888888888887776
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-12 Score=124.22 Aligned_cols=260 Identities=15% Similarity=0.116 Sum_probs=116.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC----cchHHHHHHHhcCCCChhhHHHHHHHHHHh----CCCC-chhHH
Q 007329 165 NVLIGGYAKAGFFDEALSLYQRMFWVGGVKPD----VYTFPCVLRTCGGVPDLKRGKEVHVHVIRF----GYEA-DVDVV 235 (608)
Q Consensus 165 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~ 235 (608)
......+...|++++|+..|++..+.. +.+ ...+..+...+...|++++|...+++..+. +..| ...++
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 333444444555555555555544432 111 123444444444455555555544443322 1111 12344
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCC-----C----HhHHHHHHHHHHhcCC--------------------hhHHHHHH
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPKR-----D----RISWNAMISGYFENGE--------------------YMKGLMLF 286 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~a~~~~ 286 (608)
..+...|...|++++|...+++..+. + ..++..+...|...|+ +++|.+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44555555555555555555443321 1 2245555555555555 55555555
Q ss_pred HHHHHC----CCCC-ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCC-CC----cccchHHHHHHHhcCChHHHHHHH
Q 007329 287 IMMREV----LVDP-DFMTLSSVISASELVGDEKLGREVHGYVIKMGFS-DD----VSVCNPLIKMYLSFGNREEGEKVF 356 (608)
Q Consensus 287 ~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 356 (608)
.+.... +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 544321 1011 1223444455555566666666665555433100 01 114444555555555555555555
Q ss_pred hhCCC-----CC----hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHH
Q 007329 357 SRMES-----KD----VVSWTTMISCYEGSVLPDKAVETYQMMEAEGS-MPD----EITIASVLSACACLGNLDLGIKLH 422 (608)
Q Consensus 357 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 422 (608)
++..+ .+ ..++..+...|...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44432 11 23344445555555555555555555443210 001 233444445555555555555555
Q ss_pred HHHH
Q 007329 423 QLAM 426 (608)
Q Consensus 423 ~~~~ 426 (608)
+...
T Consensus 331 ~~al 334 (406)
T 3sf4_A 331 EKHL 334 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-10 Score=109.51 Aligned_cols=214 Identities=10% Similarity=-0.010 Sum_probs=144.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 007329 381 DKAVETYQMMEAEGSMPDEITIASVLSACA-------CLGNL-------DLGIKLHQLAMRTGLISYIIIANTLIDMYSK 446 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (608)
++|..+|++..... +-+...|..+...+. +.|++ ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46666777766642 224455555555543 34665 7777777777763113445577777777777
Q ss_pred cCCHHHHHHHHccCCC--C-Ccc-cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh-ccCcHHHHHHH
Q 007329 447 CKCIDKALEVFHQIPD--K-NVI-SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA-RIGALMCGKEI 521 (608)
Q Consensus 447 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~ 521 (608)
.|++++|.++|++..+ | +.. .|..++..+.+.|++++|..+|++.+...+++...|........ ..|++++|..+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888777653 2 233 67777777778888888888888887333444445544333322 35888888888
Q ss_pred HHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-C----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 522 HAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-E----R---DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
|+++++..+. +...|..++..+.+.|++++|..+|+++ . + ....|..++..+...|+.+.|..+++++.+.
T Consensus 192 ~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 192 FELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888776544 5677777888888888888888888877 2 1 3557888888888888888888888888775
Q ss_pred CCCCC
Q 007329 594 KGNWR 598 (608)
Q Consensus 594 g~~p~ 598 (608)
.|+
T Consensus 271 --~p~ 273 (308)
T 2ond_A 271 --FRE 273 (308)
T ss_dssp --TTT
T ss_pred --ccc
Confidence 555
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.1e-12 Score=122.30 Aligned_cols=268 Identities=14% Similarity=0.099 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhhcCChhhHHHHHHHHHHh----CCC-CCccc
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMREVLVDPD----FMTLSSVISASELVGDEKLGREVHGYVIKM----GFS-DDVSV 335 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 335 (608)
.+......+...|++++|...|++..+.... + ...+..+...+...|++++|...++...+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4555677889999999999999999886322 2 356778888899999999999999987654 211 12456
Q ss_pred chHHHHHHHhcCChHHHHHHHhhCCC-----CC----hhhHHHHHHHHHcCCC--------------------chHHHHH
Q 007329 336 CNPLIKMYLSFGNREEGEKVFSRMES-----KD----VVSWTTMISCYEGSVL--------------------PDKAVET 386 (608)
Q Consensus 336 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 386 (608)
+..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 78889999999999999999988754 22 3367788888999999 8888888
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHhHhcCCHHHHHHHHccC
Q 007329 387 YQMMEAE----GSMP-DEITIASVLSACACLGNLDLGIKLHQLAMRTGLI-SYIIIANTLIDMYSKCKCIDKALEVFHQI 460 (608)
Q Consensus 387 ~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 460 (608)
+++.... +..+ ....+..+...+...|+++.|...++...+.... .+..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------------- 220 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA------------------------- 220 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH-------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH-------------------------
Confidence 8776532 1111 1234555666666777777777776665532100 0000
Q ss_pred CCCCcccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--
Q 007329 461 PDKNVISWTSIILGLRLNNRSFEALIFFRKMML--NLKPN----SVTLVSILSACARIGALMCGKEIHAHALRIGVAF-- 532 (608)
Q Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-- 532 (608)
.....+..+...+...|++++|.+.+++... ....+ ..++..+...+...|++++|...++++.+.....
T Consensus 221 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 221 --AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp --HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 0011344455555555566666655555541 00111 3456666677777777777777777665432111
Q ss_pred ---CccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 533 ---DGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 533 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
...++..+...|.+.|++++|.+.++++
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1335666777888888888888887765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-11 Score=102.63 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 474 (608)
+...|..+...+...|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+.... ..+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34455556666666666666666666666554 3445556666666666666666666666544 2233455555666
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
+...++++.|.+.+.+.....+.+...+..+...+...|++++|.+.++++.+..+. +...+..++.+|.+.|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHHH
Confidence 667777777777777776444556667777777777778888888888777776654 5667777777888888888888
Q ss_pred HHHHhc
Q 007329 555 NQFNSN 560 (608)
Q Consensus 555 ~~~~~~ 560 (608)
+.|+++
T Consensus 162 ~~~~~a 167 (184)
T 3vtx_A 162 KYFKKA 167 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887776
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.6e-12 Score=121.32 Aligned_cols=163 Identities=14% Similarity=0.045 Sum_probs=115.6
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhc-------CCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhc------C-Cc
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQEL-------NICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTM------S-HL 128 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~ 128 (608)
+..+...+...|++++|+..|+++.+. ........+..+...+...|++++|...++..++.. . ..
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 677888899999999999999998763 222245567777788888999999999998887652 1 22
Q ss_pred chhHHhHHHHHhhhcCChhhHHHHHcccCC-----------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC
Q 007329 129 SVRLGNAFLSMFVKFGDLGHAWYVFGKMCD-----------RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWV-----GG 192 (608)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~ 192 (608)
....+..+...|...|++++|...|++..+ ....++..+...+...|++++|++++++..+. ++
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 355677778888888888888888877632 12345667777777888888888888777653 00
Q ss_pred CCC-CcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 193 VKP-DVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 193 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
..| ...++..+...+...|++++|.+.++++.+
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112 233566666677777777777777777665
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-10 Score=99.40 Aligned_cols=164 Identities=10% Similarity=-0.004 Sum_probs=140.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA 510 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~ 510 (608)
...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|.+.++++....+.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34566677888889999999999998874 345678888899999999999999999998555667888999999999
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEF 586 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 586 (608)
..|++++|.+.++++.+..+. +...+..++.+|...|++++|.+.++++ +.+...|..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999987654 6778888999999999999999999988 55788999999999999999999999
Q ss_pred HHHHHHcCCCCCch
Q 007329 587 FRKMIDSKGNWRKL 600 (608)
Q Consensus 587 ~~~m~~~g~~p~~~ 600 (608)
+++..+. .|+..
T Consensus 167 ~~~~~~~--~~~~~ 178 (186)
T 3as5_A 167 FKKANEL--DEGAS 178 (186)
T ss_dssp HHHHHHH--HHCCC
T ss_pred HHHHHHc--CCCch
Confidence 9999875 44443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-12 Score=122.30 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=134.3
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC-C
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAE-------GSMPDEITIASVLSACACLGNLDLGIKLHQLAMRT------GL-I 431 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~ 431 (608)
.+..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++.+.+. +- +
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555666666666666555542 11122344555566666666666666666655543 11 2
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHccCCC-------C----CcccHHHHHHHHHhCCCchHHHHHHHHhHh-------
Q 007329 432 SYIIIANTLIDMYSKCKCIDKALEVFHQIPD-------K----NVISWTSIILGLRLNNRSFEALIFFRKMML------- 493 (608)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~------- 493 (608)
.....+..+...|...|++++|.+.|++..+ + ....+..+...+...|++++|+++++++..
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2344556666666666777766666665441 1 124566677778888888888888888761
Q ss_pred CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC-------CCCC-ccHHH------HHHHHhHhcCCHHHHHHHHH
Q 007329 494 NLKP-NSVTLVSILSACARIGALMCGKEIHAHALRIG-------VAFD-GFLPN------ALLDMYVRCGRMKPAWNQFN 558 (608)
Q Consensus 494 ~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~p~-~~~~~------~l~~~~~~~g~~~~A~~~~~ 558 (608)
+..| ...++..+...+...|++++|.+.++++.+.. ..+. ...+. .+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 1123 34467788888889999999999998887531 1121 22222 22233444555666666666
Q ss_pred hc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 559 SN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 559 ~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.. +.+..+|..+...|...|++++|.+++++.++.
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66 224567889999999999999999999998764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-10 Score=113.85 Aligned_cols=219 Identities=11% Similarity=-0.118 Sum_probs=148.1
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCC-CCC-----HHHHH
Q 007329 339 LIKMYLSFGNREEGEKVFSRMES-----K----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGS-MPD-----EITIA 403 (608)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-----~~t~~ 403 (608)
....+...|++++|...|++..+ + ...++..+...|...|++++|+..+++..+.-. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556667777777777766543 2 224566777777788888888887777654210 111 34667
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCC-C----chhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----cccHH
Q 007329 404 SVLSACACLGNLDLGIKLHQLAMRTGLI-S----YIIIANTLIDMYSKCKCIDKALEVFHQIPD-----KN----VISWT 469 (608)
Q Consensus 404 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~ 469 (608)
.+...|...|++++|...++...+.... . ...++..+..+|...|++++|.+.|++..+ .+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888776643111 1 123667788888888888888888877653 22 24577
Q ss_pred HHHHHHHhCCCchHHHHHHHHhH--h---CCCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhCCCCC-ccHHHHH
Q 007329 470 SIILGLRLNNRSFEALIFFRKMM--L---NLKPNSVTLVSILSACARIGA---LMCGKEIHAHALRIGVAFD-GFLPNAL 540 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~--~---~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l 540 (608)
.+...+.+.|++++|.+.+++.. . +.+.....+..+...+...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 78888888999999999988877 1 111222345667778888888 66666666554 33222 3466678
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
...|...|++++|.+.++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999988875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-11 Score=118.84 Aligned_cols=208 Identities=7% Similarity=-0.131 Sum_probs=157.0
Q ss_pred hHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 007329 349 REEGEKVFSRMES---KDVVSWTTMISCYEGSVLP-DKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQL 424 (608)
Q Consensus 349 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 424 (608)
++++...+++... .+...|..+...|...|++ ++|++.|++..+.. .-+...+..+...|...|++++|.+.++.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444332 3556667777777777787 88888887777653 22466777777777888888888888877
Q ss_pred HHHhCCCCchhHHHHHHHHhHhc---------CCHHHHHHHHccCC---CCCcccHHHHHHHHHhC--------CCchHH
Q 007329 425 AMRTGLISYIIIANTLIDMYSKC---------KCIDKALEVFHQIP---DKNVISWTSIILGLRLN--------NRSFEA 484 (608)
Q Consensus 425 ~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~--------~~~~~A 484 (608)
+.+.. |+...+..+...|... |++++|.+.|++.. ..+...|..+..+|... |++++|
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 77654 4457777777777777 88888888887765 23456777788888877 889999
Q ss_pred HHHHHHhHhCCC---CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 485 LIFFRKMMLNLK---PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 485 ~~~~~~m~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
++.|++...-.+ .+...|..+..++...|++++|.+.++++.+..+. +...+..+..++...|++++|.+.+.++
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999983333 57888999999999999999999999999988765 5667888999999999999999877776
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-10 Score=111.59 Aligned_cols=223 Identities=15% Similarity=0.030 Sum_probs=166.6
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-----C-CchhHHHH
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGS-MPD----EITIASVLSACACLGNLDLGIKLHQLAMRTGL-----I-SYIIIANT 439 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 439 (608)
...+...|++++|+..|++..+... .++ ...+..+...|...|+++.|...++...+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3456678888888888888765421 122 34567777788888888888888887765311 1 12456677
Q ss_pred HHHHhHhcCCHHHHHHHHccCCC-----CC----cccHHHHHHHHHhCCCchHHHHHHHHhHh-----CCCCCHHHHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPD-----KN----VISWTSIILGLRLNNRSFEALIFFRKMML-----NLKPNSVTLVSI 505 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~p~~~~~~~l 505 (608)
+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|++.+++... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 88888888998888888876652 12 24677788899999999999999999884 555556788899
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCC-C---ccHHHHHHHHhHhcCC---HHHHHHHHHhcC---CCHHHHHHHHHHHH
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAF-D---GFLPNALLDMYVRCGR---MKPAWNQFNSNE---RDVSAWNILLTGYA 575 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p-~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~l~~~~~ 575 (608)
...+.+.|++++|...++++.+..... + ...+..+...|...|+ +++|...+++.. .....+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 999999999999999999998764332 1 2345566777788888 899999998872 22346778999999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 007329 576 ERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 576 ~~g~~~~A~~~~~~m~~~ 593 (608)
..|++++|.+.|++..+.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-10 Score=105.43 Aligned_cols=178 Identities=7% Similarity=0.016 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchh-HHHHHHHHhHhcCCHHHHHHHHc
Q 007329 381 DKAVETYQMMEAEGSMP-DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYII-IANTLIDMYSKCKCIDKALEVFH 458 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 458 (608)
++|..+|++..+. +.| +...|..++..+.+.|+++.|..+|+.+.+.. +.+.. .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4555555555442 012 23344445555555555555555555554422 11122 45555555555555555555555
Q ss_pred cCCCCC---cccHHHHHHHH-HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC-CCC-
Q 007329 459 QIPDKN---VISWTSIILGL-RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIG-VAF- 532 (608)
Q Consensus 459 ~~~~~~---~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p- 532 (608)
+..+.+ ...|....... ...|++++|..+|++.+...+.+...+..++..+.+.|++++|..+|+++.+.. +.|
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~ 238 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHH
Confidence 544211 12222211111 124666666666666663333455566666666666666666666666666642 233
Q ss_pred -CccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 533 -DGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 533 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
....|..++..+.+.|+.++|..+++++
T Consensus 239 ~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 239 KSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2345566666666666666666666665
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-10 Score=120.63 Aligned_cols=158 Identities=11% Similarity=0.095 Sum_probs=116.1
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA 510 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~ 510 (608)
...++.|..+|.+.|++++|++.|++..+ .+...|+.+..+|.+.|++++|++.|++.++-.+-+...|..+..++.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44556666666666666666666665542 234566777777777777777777777777434445677888888888
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---E-RDVSAWNILLTGYAERGQGALAEEF 586 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~~~~~~~~l~~~~~~~g~~~~A~~~ 586 (608)
..|++++|++.++++++..+. +...|..++.+|.+.|++++|++.|+++ . .+...|..+...|...|++++|.+.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHH
Confidence 888888888888888877655 5677788888888888888888888877 3 4577888888888888888888888
Q ss_pred HHHHHH
Q 007329 587 FRKMID 592 (608)
Q Consensus 587 ~~~m~~ 592 (608)
++++++
T Consensus 168 ~~kal~ 173 (723)
T 4gyw_A 168 MKKLVS 173 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-08 Score=100.11 Aligned_cols=256 Identities=11% Similarity=-0.049 Sum_probs=126.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChh----HHHHHHHHHhhcCChhhHHHHHHHHHHhCCC-CC----cccchHHHH
Q 007329 271 SGYFENGEYMKGLMLFIMMREVLVDPDFM----TLSSVISASELVGDEKLGREVHGYVIKMGFS-DD----VSVCNPLIK 341 (608)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~ 341 (608)
..+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+..-. .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666555432111111 2333334455556666666666555432100 01 112334455
Q ss_pred HHHhcCChHHHHHHHhhCCC-------C----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 007329 342 MYLSFGNREEGEKVFSRMES-------K----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM--P--DEITIASVL 406 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~t~~~ll 406 (608)
.+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 55566666666655554432 1 1123444555666677777777777666543211 1 134555666
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHhHhcCCHHHHHHHHccCCCCCc-------ccHHHHHH
Q 007329 407 SACACLGNLDLGIKLHQLAMRTGLISYI-IIAN-----TLIDMYSKCKCIDKALEVFHQIPDKNV-------ISWTSIIL 473 (608)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~l~~ 473 (608)
..+...|++++|...++........++. ..+. ..+..+...|++++|...+++...+.. ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 6677777777777777766543211111 1111 222335567777777777766654321 12344455
Q ss_pred HHHhCCCchHHHHHHHHhH---h--CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 474 GLRLNNRSFEALIFFRKMM---L--NLKPNS-VTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 474 ~~~~~~~~~~A~~~~~~m~---~--~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
.+...|++++|...+++.. . +..++. ..+..+..++...|+.++|...++++.
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5666666666666666554 1 111111 133344444555555555555555444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-08 Score=98.73 Aligned_cols=260 Identities=13% Similarity=0.012 Sum_probs=171.3
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCChh----hHHHHHHHhhccCCchhhhHHHHHHHHhcCCc-c----hhHHhHHH
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVDED----ALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL-S----VRLGNAFL 137 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~ 137 (608)
-..+...|++++|+..+++........+.. .+..+...+...|++++|...++......... + ...+..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345667999999999999987754322222 34555567788999999999999887654321 1 23356677
Q ss_pred HHhhhcCChhhHHHHHcccCC-------C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC--CcchHHHH
Q 007329 138 SMFVKFGDLGHAWYVFGKMCD-------R----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGV-KP--DVYTFPCV 203 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~p--~~~~~~~l 203 (608)
..+...|++++|...+++... + ....+..+...+...|++++|...+++......- .+ ....+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 788889999999998887622 1 1234566777888999999999999988764311 11 12356667
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHccCCCCC-------HhHHHHHH
Q 007329 204 LRTCGGVPDLKRGKEVHVHVIRFGYEADV-DVVN-----ALITMYVKCGDLVRARLVFDGMPKRD-------RISWNAMI 270 (608)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li 270 (608)
...+...|++++|...+++..+....++. ..+. ..+..+...|++++|...+++....+ ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 77788889999999999888765322221 1111 23344778899999988888776542 22456677
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCCCCh-hHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 271 SGYFENGEYMKGLMLFIMMREV----LVDPDF-MTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
..+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7788888888888888776542 211111 1334444555566666666666665543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-09 Score=103.52 Aligned_cols=158 Identities=10% Similarity=-0.047 Sum_probs=78.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCC----cchHHHHHHHhcCCCChhhHHHHHHHHHHhCC-----C-CchhHHHHHH
Q 007329 170 GYAKAGFFDEALSLYQRMFWVGGVKPD----VYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGY-----E-ADVDVVNALI 239 (608)
Q Consensus 170 ~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-----~-~~~~~~~~li 239 (608)
.+...|++++|++.|++..+...-.++ ...+..+...+...|+++.|...+++..+.-. . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 344556666666666655432101111 22344445555555555555555555443210 0 0133455555
Q ss_pred HHHHhcCCHHHHHHHHccCCC-----C----CHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCChhHHHHHHH
Q 007329 240 TMYVKCGDLVRARLVFDGMPK-----R----DRISWNAMISGYFENGEYMKGLMLFIMMREV----LVDPDFMTLSSVIS 306 (608)
Q Consensus 240 ~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~ 306 (608)
..|...|++++|.+.|++..+ . ...+++.+...|...|++++|.+.+++..+. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 556666666666555544332 0 1234555566666666666666666655441 11112344555555
Q ss_pred HHhhcCChhhHHHHHHHHHHh
Q 007329 307 ASELVGDEKLGREVHGYVIKM 327 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~ 327 (608)
.+.+.|++++|...++...+.
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 566666666666666665544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=9.4e-10 Score=99.26 Aligned_cols=195 Identities=8% Similarity=-0.037 Sum_probs=139.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-CcccHHHHHH
Q 007329 397 PDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-NVISWTSIIL 473 (608)
Q Consensus 397 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 473 (608)
.|+..+......+...|++++|...|+...+...+++...+..+..++.+.|++++|.+.|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888889999999999999888877436666666688888888999999888887663 2 3456777888
Q ss_pred HHHhCCCchHHHHHHHHhHhCCCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhH
Q 007329 474 GLRLNNRSFEALIFFRKMMLNLKPNS-------VTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYV 545 (608)
Q Consensus 474 ~~~~~~~~~~A~~~~~~m~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 545 (608)
.+...|++++|++.+++.....+.+. ..|..+...+...|++++|.+.++++++..+.. +...+..+..+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 88888888888888888884444455 457777777788888888888888887653210 1345666677776
Q ss_pred hcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 546 RCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..|+. .++++ ..+...|.... ....+.+++|...+++..+. .|++.
T Consensus 165 ~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 165 NNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp HHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 55543 22222 33444444433 33456679999999999986 77766
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.4e-10 Score=95.37 Aligned_cols=161 Identities=16% Similarity=0.079 Sum_probs=85.6
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
.|..+...+...|++++|...++++.+.. ..+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555556666666666766666665442 2245555666666666666666666666665543 233444444444455
Q ss_pred hcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Q 007329 446 KCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHA 525 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 525 (608)
..|++++|.+.+ +++....+.+...+..+...+...|++++|...++++
T Consensus 88 ~~~~~~~A~~~~-------------------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 88 QVQKYDLAVPLL-------------------------------IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHTCHHHHHHHH-------------------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHH-------------------------------HHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 555555555444 4444223334444555555555555555555555555
Q ss_pred HHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 526 LRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 526 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+..+. +...+..++..|...|++++|.+.++++
T Consensus 137 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 137 LGLRPN-EGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 544322 3444455555555555555555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=114.52 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHH
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLR 476 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 476 (608)
..++.+...+.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|++.|++..+ .+...|..+..+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455556666666666666666666666554 33455556666666666666666666665542 23456666777777
Q ss_pred hCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 477 LNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 477 ~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
+.|++++|++.|++.++-.+-+...|..+..++...|++++|++.++++++..+. +...+..|+.+|...|++++|.+.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~ 167 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDER 167 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHH
Confidence 7777777777777776333445667777777777777777777777777776654 566677777777777877777777
Q ss_pred HHhc
Q 007329 557 FNSN 560 (608)
Q Consensus 557 ~~~~ 560 (608)
++++
T Consensus 168 ~~ka 171 (723)
T 4gyw_A 168 MKKL 171 (723)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-09 Score=94.12 Aligned_cols=187 Identities=9% Similarity=-0.033 Sum_probs=109.4
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
...+......+...|++++|+..|++..+....++...+..+...+...|++++|...++...+.. +.+...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344555555666666666666666666655433455555556666666666666666666666544 3345556666666
Q ss_pred hHhcCCHHHHHHHHccCCC--C-Cc-------ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC---HHHHHHHHHHHh
Q 007329 444 YSKCKCIDKALEVFHQIPD--K-NV-------ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN---SVTLVSILSACA 510 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~--~-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~ 510 (608)
|.+.|++++|...|++..+ | +. ..|..+...+...|++++|++.|++.+ ...|+ ...+..+..++.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT-DVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH-hcCCCcccHHHHHHHHHHHH
Confidence 6666666666666665542 2 22 245666667777788888888888777 33443 455666666664
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..| ..+++++...+.. +...|... .....+.+++|...++++
T Consensus 165 ~~~-----~~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a 206 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEA 206 (228)
T ss_dssp HHH-----HHHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 433 3334444443322 22223222 233456677888888777
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-09 Score=85.26 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=108.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.|..+...+...|++++|..+++++....+.+...+..+...+...|++++|..+++++.+.++. +...+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 46677888888899999999999988444557778888889999999999999999999887654 56678888999999
Q ss_pred cCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 547 CGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 547 ~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.|++++|.+.++++ +.+...|..++..+...|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999887 456888999999999999999999999999875
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6.9e-10 Score=103.69 Aligned_cols=195 Identities=11% Similarity=-0.007 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHh------CC-CCchhHHHHHHHHhHhcCCHHHHHHHHccCCC-------C-
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRT------GL-ISYIIIANTLIDMYSKCKCIDKALEVFHQIPD-------K- 463 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 463 (608)
..++..+...+...|++++|...++.+.+. +- +....++..+...|...|++++|.+.|++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555566666666666666666655543 11 12234555666666666666666666665431 1
Q ss_pred ---CcccHHHHHHHHHhCCCchHHHHHHHHhHhC-------CCC-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHh----
Q 007329 464 ---NVISWTSIILGLRLNNRSFEALIFFRKMMLN-------LKP-NSVTLVSILSACARIGALMCGKEIHAHALRI---- 528 (608)
Q Consensus 464 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---- 528 (608)
....|..+...+...|++++|++.++++... ..| ...++..+...+...|++++|.++++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1245666777788888888888888877611 122 3557888889999999999999999988754
Q ss_pred ---CCCC-CccHHHHHHHHhHhc------CCHHHHHHHHHhcC-C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 529 ---GVAF-DGFLPNALLDMYVRC------GRMKPAWNQFNSNE-R---DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 529 ---~~~p-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
...+ ....+..+...+... ..+..+...++... . ...++..+...|...|++++|.+++++.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 234444444444433 33455555555552 1 2457888999999999999999999998763
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2e-09 Score=101.19 Aligned_cols=234 Identities=9% Similarity=-0.035 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHhCCCCCcccchHHHHHHHhc---CChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007329 316 LGREVHGYVIKMGFSDDVSVCNPLIKMYLSF---GNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEA 392 (608)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 392 (608)
+|.+++.+..+.- ++....+ .+.+. +++++|...|.+. ...|...|++++|...|.+..+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666552 2222222 22232 2477777766553 6677888888888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCccc
Q 007329 393 E----GSMPD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVIS 467 (608)
Q Consensus 393 ~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (608)
. |-.++ ..+|..+...|...|++++|...++...+. +...|+...+. .+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~~~g~~~~~a-----------~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FTHRGQFRRGA-----------NF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHH-----------HH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHcCCHHHHH-----------HH
Confidence 3 21111 356777777777778888887777766542 11122222221 23
Q ss_pred HHHHHHHHHhC-CCchHHHHHHHHhHh---CCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcc-----
Q 007329 468 WTSIILGLRLN-NRSFEALIFFRKMML---NLKPN---SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGF----- 535 (608)
Q Consensus 468 ~~~l~~~~~~~-~~~~~A~~~~~~m~~---~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----- 535 (608)
|+.+...|... |++++|+..|++.+. +.... ..++..+...+...|++++|...++++.+..+.....
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 44555566664 666666666666651 11100 2356666777777777777777777777655443221
Q ss_pred -HHHHHHHHhHhcCCHHHHHHHHHhc---CCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 007329 536 -LPNALLDMYVRCGRMKPAWNQFNSN---ERDV------SAWNILLTGYA--ERGQGALAEEFFRKMID 592 (608)
Q Consensus 536 -~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 592 (608)
.+..++.+|...|++++|...+++. .|+. ..+..++.+|. ..+++++|+..|+++..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 3555666777777777777777776 3321 12334455553 34556667666665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-09 Score=99.32 Aligned_cols=219 Identities=11% Similarity=-0.049 Sum_probs=123.6
Q ss_pred CCChHHHHHHHHHHhhc-------CCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhc------C-CcchhHHhHHHH
Q 007329 73 NGSLEQALKYLDSMQEL-------NICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTM------S-HLSVRLGNAFLS 138 (608)
Q Consensus 73 ~~~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~ 138 (608)
.|++++|+..|++..+. .......++..+...+...|++++|...++.+++.. . .....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34555555555544331 112234556666677777788888888777776552 1 123456677777
Q ss_pred HhhhcCChhhHHHHHcccCC-------C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhc-----CCCCC-CcchHH
Q 007329 139 MFVKFGDLGHAWYVFGKMCD-------R----DLFSWNVLIGGYAKAGFFDEALSLYQRMFWV-----GGVKP-DVYTFP 201 (608)
Q Consensus 139 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~p-~~~~~~ 201 (608)
.|...|++++|...|++..+ + ...+|..+...+...|++++|++++++..+. ++-.| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 77777888877777776621 1 2345667777777778888888877777654 10122 234566
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhC-------CCC-chhHHHHHHHHHHhcC------CHHHHHHHHccCCCC---CHh
Q 007329 202 CVLRTCGGVPDLKRGKEVHVHVIRFG-------YEA-DVDVVNALITMYVKCG------DLVRARLVFDGMPKR---DRI 264 (608)
Q Consensus 202 ~ll~~~~~~~~~~~a~~~~~~~~~~g-------~~~-~~~~~~~li~~~~~~g------~~~~A~~~~~~~~~~---~~~ 264 (608)
.+...+...|++++|.+.+++..+.. ..+ ....+..+...+...+ .+..+...++..... ...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 66777777777777777777776531 112 2223333333332222 233344444444432 344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 265 SWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 265 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
++..+...|...|++++|...+++..+
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566677777777777777777776654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-07 Score=92.31 Aligned_cols=202 Identities=9% Similarity=-0.022 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH-HHHHccC
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKA-LEVFHQI 460 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~ 460 (608)
.+..+|+++.... .-+...|...+.-+.+.|+.+.|..+++..... +.+...+.... ...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~----~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYG----LVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH----HHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHH----hhcchhHHHHHHHHHH
Confidence 4566777776643 334666666677777788888888888888877 33333333222 11111111 1111111
Q ss_pred C------------CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHHHH
Q 007329 461 P------------DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACAR-IGALMCGKEIHAHALR 527 (608)
Q Consensus 461 ~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 527 (608)
. ......|...+..+.+.++.+.|..+|++.. ....+...|......-.. .++.+.|..+++...+
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 0 0012456666777777888999999999983 222344455433322222 2369999999999987
Q ss_pred hCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 528 IGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSNERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 528 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
.-+. ++..+...++...+.|+.+.|..+|+++......|...+..-...|+.+.+..+++++.+
T Consensus 349 ~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KHPD-STLLKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6433 345667788888899999999999999966788899999888889999999999998875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-08 Score=90.36 Aligned_cols=160 Identities=9% Similarity=-0.023 Sum_probs=95.4
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCC--C-C---cccHHHHHHHHHhCCCchHHHHHHHHhHhCC--C-CCHHHHHHHHHH
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPD--K-N---VISWTSIILGLRLNNRSFEALIFFRKMMLNL--K-PNSVTLVSILSA 508 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~-p~~~~~~~ll~~ 508 (608)
-.+...+.+.|++++|...|+++.+ | + ...+..+..++.+.|++++|+..|++.+... . .....+..+..+
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 3334444445555555555554432 1 1 2234444555555555555555555555111 1 113344445555
Q ss_pred Hhc--------cCcHHHHHHHHHHHHHhCCCCCccHH-----------------HHHHHHhHhcCCHHHHHHHHHhc---
Q 007329 509 CAR--------IGALMCGKEIHAHALRIGVAFDGFLP-----------------NALLDMYVRCGRMKPAWNQFNSN--- 560 (608)
Q Consensus 509 ~~~--------~~~~~~a~~~~~~~~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~--- 560 (608)
+.. .|++++|...++++++..+. +.... ..++..|.+.|++++|...|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555 56666666666666654433 22222 45678889999999999999888
Q ss_pred CCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCch
Q 007329 561 ERD----VSAWNILLTGYAER----------GQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 561 ~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.|+ ...+..+..+|... |++++|...++++++. .|++.
T Consensus 178 ~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 178 YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 443 45777888888766 8889999999999886 67663
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-08 Score=89.43 Aligned_cols=175 Identities=11% Similarity=-0.032 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCC-----CcccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 418 GIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDK-----NVISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
+...+++..+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 333333445555666666666666666655322 22344455566666666666666666665
Q ss_pred hCCCC-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-C-
Q 007329 493 LNLKP-----NSVTLVSILSA--CARIG--ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-E- 561 (608)
Q Consensus 493 ~~~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 561 (608)
...| +..+...++.+ ....| ++++|..+|+++.+.. |+......|..++.+.|++++|.+.++.+ .
T Consensus 164 -~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 -NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344 23444444444 22223 6666666666664432 22112223334666667777776666543 1
Q ss_pred -----------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 562 -----------R-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 562 -----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
| |+.+...+|......|+ +|.++++++.+. .|++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 2 44455455555555565 666777777664 56654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=8.1e-09 Score=85.88 Aligned_cols=139 Identities=5% Similarity=-0.109 Sum_probs=93.9
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
|..++...|++++|++.++..... +...+..+...|.+.|++++|++.|++.++-.+-+..+|..+..++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 344556667777777777766643 23456667777778888888888888777444556777777777788888888
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHH-HHhc----CCCHHHHHHHHHHHHhcCC
Q 007329 517 CGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQ-FNSN----ERDVSAWNILLTGYAERGQ 579 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~----~~~~~~~~~l~~~~~~~g~ 579 (608)
+|...++++++..+. +...+..+..+|.+.|++++|.+. ++++ +.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888877776655 566777777777777877665554 4554 4456667766666666664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=87.59 Aligned_cols=174 Identities=10% Similarity=0.044 Sum_probs=104.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 007329 383 AVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGL-ISYIIIANTLIDMYSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 383 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 461 (608)
|+..|++..+.+ .++..++..+..++...|++++|++++...++.+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665544 44555555666777777777777777776655442 2355666667777777777777777777765
Q ss_pred CCC-------cccHHHHHHH--HHh--CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 462 DKN-------VISWTSIILG--LRL--NNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 462 ~~~-------~~~~~~l~~~--~~~--~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
+.+ ..+...++.+ ... .+++.+|..+|+++. ...|+..+...++.++.+.|++++|.+.++.+.+.-+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~-~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS-QTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH-TTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 322 2333444444 222 237778888888876 3345533333444477777888888888876654310
Q ss_pred ---------CCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 531 ---------AFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 531 ---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.-++.+...+|......|+ +|.++++++
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 1145555455555555665 666777666
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=8.8e-08 Score=89.80 Aligned_cols=129 Identities=9% Similarity=-0.121 Sum_probs=62.8
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCC-----CC----cchHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCC----c
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCD-----RD----LFSWNVLIGGYAKA-GFFDEALSLYQRMFWVGGVKPD----V 197 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~ 197 (608)
+++.+..+|.+.|++++|+..|++..+ .+ ..+|+.+...|... |++++|++.|++..+...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444444444444555554444444311 01 12445555555554 6666666555555432100000 2
Q ss_pred chHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCch------hHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 007329 198 YTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADV------DVVNALITMYVKCGDLVRARLVFDGMPK 260 (608)
Q Consensus 198 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 260 (608)
.++..+...+...|++++|...++...+....... ..+..+..++...|++++|...|++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555556666666666666655554322211 1345555556666666666666665544
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-08 Score=105.09 Aligned_cols=150 Identities=9% Similarity=-0.063 Sum_probs=67.0
Q ss_pred HcCCCchHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHh
Q 007329 375 EGSVLPDKAVETYQMME--------AEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSK 446 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 446 (608)
...|++++|++.+++.. +.. ..+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555554 211 1123344444445555555555555555544433 2233444444444444
Q ss_pred cCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 447 CKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 447 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
.|++++|.+.|++..+ .+...|..+..++.+.|++++ ++.|++.++-.+.+...|..+..++.+.|++++|.+.++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555544444331 123344444444444444444 444444442222333444444444444444444444444
Q ss_pred HHHH
Q 007329 524 HALR 527 (608)
Q Consensus 524 ~~~~ 527 (608)
++.+
T Consensus 559 ~al~ 562 (681)
T 2pzi_A 559 EVPP 562 (681)
T ss_dssp TSCT
T ss_pred hhcc
Confidence 4433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=89.30 Aligned_cols=181 Identities=11% Similarity=-0.026 Sum_probs=121.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCC
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNR 480 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 480 (608)
.+......+...|++++|...|+...+.. +.+...+... ....... ......+.+..+|.+.|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~~~----------~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKNSE----------ISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTTSH----------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcchhh----------hhHHHHHHHHHHHHHCCC
Confidence 34444556677888888888888877654 1122222110 0000000 011223447778888899
Q ss_pred chHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC--HHHHHHHHH
Q 007329 481 SFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR--MKPAWNQFN 558 (608)
Q Consensus 481 ~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~ 558 (608)
+++|+..|++.+...+.+...+..+..++...|++++|...++++++..+. +...+..++.+|...|+ .+.+...++
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~ 148 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYK 148 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999888555557788888888999999999999999999887765 67778888888766654 455666777
Q ss_pred hc-CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 559 SN-ERDVS--AWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 559 ~~-~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++ .|++. .|..+..++...|++++|.+.|++.++. .|+.-
T Consensus 149 ~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 149 KLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 66 55543 3455566677788999999999998874 67654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.4e-08 Score=84.74 Aligned_cols=153 Identities=13% Similarity=-0.011 Sum_probs=99.7
Q ss_pred HHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHH-HhccC
Q 007329 438 NTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA-CARIG 513 (608)
Q Consensus 438 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~-~~~~~ 513 (608)
..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++.... .|+...+..+... +...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-cCChHHHHHHHHHHHHhhc
Confidence 3445556667777777777777663 24456666777777777777777777776622 2244332222111 11222
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD---VSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
...+|...++++.+..+. +...+..+..+|...|++++|...|+++ .|+ ...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 233467777777776554 5677777888888888888888888877 443 457888888888888888888888
Q ss_pred HHHHH
Q 007329 588 RKMID 592 (608)
Q Consensus 588 ~~m~~ 592 (608)
++.+.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-07 Score=77.28 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=24.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALR 527 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 527 (608)
+...+...|++++|.+.++++....+.+...+..+...+...|++++|...++++.+
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 333444444444444444444422222334444444444444444444444444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.9e-08 Score=100.64 Aligned_cols=146 Identities=10% Similarity=-0.046 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHH
Q 007329 413 GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFR 489 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (608)
|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44555555555544432 22344445555555555555555555554432 123344444455555555555555555
Q ss_pred HhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc---CCHHHHHHHHHhc
Q 007329 490 KMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC---GRMKPAWNQFNSN 560 (608)
Q Consensus 490 ~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 560 (608)
+..+..+.+...+..+..++...|++++|.+.++++.+..+. +...+..+..+|... |++++|.+.++++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 554222333444445555555555555555555555444332 334444444455554 5555555555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-07 Score=88.21 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCcccHH-HHHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVISWT-SIILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~l~~~ 474 (608)
+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|++++|...++++.. |+..... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 44566677777888899999999999888776 55667788888889999999999999998874 3322221 12233
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhcCCHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRCGRMKPA 553 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 553 (608)
+.+.++.++|++.+++.....+.+...+..+...+...|++++|...++++.+..+.. +...+..++..|...|+.++|
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 5566777777777777775455566777777777777777777777777777765542 245566666777777776666
Q ss_pred HHHHHh
Q 007329 554 WNQFNS 559 (608)
Q Consensus 554 ~~~~~~ 559 (608)
...+++
T Consensus 275 ~~~~r~ 280 (287)
T 3qou_A 275 ASXYRR 280 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-07 Score=84.65 Aligned_cols=183 Identities=13% Similarity=0.008 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCcc----cHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLIS--YIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVI----SWT 469 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 469 (608)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|++..+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34455666777888999999999999888764221 135667788888889999999998888763 3221 344
Q ss_pred HHHHHHHh------------------CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 470 SIILGLRL------------------NNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 470 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
.+..++.+ .|++++|+..|++++...+-+.......... ..+.....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH-----
Confidence 44444443 3456666666666652222222222111100 00000000
Q ss_pred CCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 532 FDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-V---SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.....++..|.+.|++++|...|+++ .|+ . ..+..+..+|.+.|++++|.+.++++... .|+++
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~--~~~~~ 218 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN--SSNTL 218 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC--CSCCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCch
Confidence 01134677899999999999999998 444 3 56888999999999999999999999886 66654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-08 Score=91.28 Aligned_cols=181 Identities=11% Similarity=-0.044 Sum_probs=107.3
Q ss_pred CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--CchhH
Q 007329 362 KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD---EITIASVLSACACLGNLDLGIKLHQLAMRTGLI--SYIII 436 (608)
Q Consensus 362 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 436 (608)
.+...+-.+...+.+.|++++|+..|+++.+.... + ...+..+..++...|+++.|...++.+.+.... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 44556666667777888888888888888775311 2 456667777777888888888888877765321 22344
Q ss_pred HHHHHHHhHh--------cCCHHHHHHHHccCCC--CC-cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHH
Q 007329 437 ANTLIDMYSK--------CKCIDKALEVFHQIPD--KN-VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSI 505 (608)
Q Consensus 437 ~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~l 505 (608)
+..+..++.+ .|++++|...|+++.+ |+ ...+..+ ..+...... -...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~--------------~~~~~~~~~---~~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDAT--------------QKIRELRAK---LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHH--------------HHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHH--------------HHHHHHHHH---HHHHHHHH
Confidence 5555666666 6666666666665542 21 1111111 000000000 00113455
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhHhc----------CCHHHHHHHHHhc
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYVRC----------GRMKPAWNQFNSN 560 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~ 560 (608)
...+...|++++|...++++++..+.. ....+..++.+|... |++++|...++++
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 667777788888888888777665432 123555666777655 7778888888777
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.2e-08 Score=82.69 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=119.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--CCcccHHHHHHH-HHhC
Q 007329 402 IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--KNVISWTSIILG-LRLN 478 (608)
Q Consensus 402 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~-~~~~ 478 (608)
+......+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|++..+ |+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 3445566778888888888888776654 45667788888888999999999999998874 333222222111 2233
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhcCCHHHHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRCGRMKPAWNQF 557 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 557 (608)
++..+|+..+++.....+.+...+..+..++...|++++|...++++.+..+.+ +...+..++.+|...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 344568888988885555578889999999999999999999999999887654 4567888999999999999999988
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
++.
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.9e-08 Score=84.64 Aligned_cols=182 Identities=13% Similarity=-0.062 Sum_probs=114.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhH
Q 007329 367 WTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEIT-IASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYS 445 (608)
Q Consensus 367 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 445 (608)
+-.....+...|++++|+..|++..+. .|+... +.. . ..... ..........+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~----~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-T----NVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-H----HSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-h----hhcch--------------hhhhHHHHHHHHHHHH
Confidence 344455788999999999999999875 344322 222 0 00000 0111223345667777
Q ss_pred hcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCc--HHHHHH
Q 007329 446 KCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGA--LMCGKE 520 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~ 520 (608)
+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.+.-.+.+...+..+..++...|. .+.+..
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~ 145 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLET 145 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 78888888888877652 3456777788888888888888888888885455567778888777765553 334444
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHH
Q 007329 521 IHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILL 571 (608)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~ 571 (608)
.++... .+.|....+..+..++...|++++|...|+++ .|+......+.
T Consensus 146 ~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 146 DYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 444443 12222223344566677788999999999887 67765444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-05 Score=79.78 Aligned_cols=368 Identities=9% Similarity=0.004 Sum_probs=177.9
Q ss_pred CC-ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCC-hhhHH
Q 007329 73 NG-SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGD-LGHAW 150 (608)
Q Consensus 73 ~~-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~ 150 (608)
.| +++.|..+|+.+... .|. |+++.+..+|+..+..- |++.+|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366666666666541 122 78888888888877743 577788777777666653 34455
Q ss_pred HHHcccC------CCCcchHHHHHHHHH----hcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhc---CCCChhhHH
Q 007329 151 YVFGKMC------DRDLFSWNVLIGGYA----KAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCG---GVPDLKRGK 217 (608)
Q Consensus 151 ~~~~~~~------~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~ 217 (608)
.+|+... ..+...|...+..+. .+|+.+.+.++|++.... ++. .+..+-..|. ...+...+.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~--~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG--SLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT--THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh--hHHHHHHHHHHHHHHhccccHH
Confidence 5665542 124455666665443 245677788888887752 221 1112211111 111111222
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHh-cCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcC--C-----hhHHHHHHHHH
Q 007329 218 EVHVHVIRFGYEADVDVVNALITMYVK-CGDLVRARLVFDGMPKRDRISWNAMISGYFENG--E-----YMKGLMLFIMM 289 (608)
Q Consensus 218 ~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m 289 (608)
+++.+... .|.. ...++++...+.. .+...|...+.--...+ - .+.+..+|++.
T Consensus 144 ~~~~~~~~---------------~y~~ar~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 144 KIVGDTLP---------------IFQSSFQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHHHHHH---------------HHHHHHHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhH---------------HHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 22211110 0000 0001222222222 13345555544422211 0 23466788887
Q ss_pred HHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHH-HHHHhhCC--------
Q 007329 290 REVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEG-EKVFSRME-------- 360 (608)
Q Consensus 290 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~-------- 360 (608)
.... +.+...|...+..+...|+.+.|..+++..+.. +.+...+. .|....+.++. ..+.+...
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 7643 334666666677777888899999999988887 33332222 22222111111 11111110
Q ss_pred --C--CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCCchh
Q 007329 361 --S--KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC-LGNLDLGIKLHQLAMRTGLISYII 435 (608)
Q Consensus 361 --~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~ 435 (608)
. .....|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...+.. +.+..
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~ 355 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTL 355 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHH
Confidence 0 01133444555555566677777777776 211 1233333221111111 235777777777666543 22334
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
.+...++...+.|+.+.|..+|+++.+ ....|...+.--...|+.+.+..+++++.
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455556666666777777777776632 23344444444444455555544444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.6e-08 Score=90.33 Aligned_cols=160 Identities=12% Similarity=-0.043 Sum_probs=132.4
Q ss_pred CCchhHHHHHHHHhHhcCCHHHHHHHHccCC--CC-CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHH-HHH
Q 007329 431 ISYIIIANTLIDMYSKCKCIDKALEVFHQIP--DK-NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLV-SIL 506 (608)
Q Consensus 431 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~-~ll 506 (608)
+.+...+..+...+.+.|++++|...|++.. .| +...+..+...+.+.|++++|...++++. ...|+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP-LQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-GGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc-hhhcchHHHHHHHH
Confidence 4556667778888999999999999999876 33 55788889999999999999999999987 3345544333 333
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC---HHHHHHHHHHHHhcCCH
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD---VSAWNILLTGYAERGQG 580 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~---~~~~~~l~~~~~~~g~~ 580 (608)
..+...++.++|...++++.+..+. +...+..+...|...|++++|.+.++++ .|+ ...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 3466778888899999999988766 7788889999999999999999999998 554 67899999999999999
Q ss_pred HHHHHHHHHHHH
Q 007329 581 ALAEEFFRKMID 592 (608)
Q Consensus 581 ~~A~~~~~~m~~ 592 (608)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.1e-06 Score=77.14 Aligned_cols=218 Identities=11% Similarity=-0.055 Sum_probs=165.1
Q ss_pred CCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHh----Hhc--
Q 007329 377 SVLPDKAVETYQMMEAEGSMPDE-ITIASVLSACACLG--NLDLGIKLHQLAMRTGLISYIIIANTLIDMY----SKC-- 447 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 447 (608)
....++|+.+++++... .|+. ..++.--..+...| +++++++.++.+...+ +-+..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33446888888888875 3444 44555566666777 8888999888888776 33444444433333 344
Q ss_pred -CCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCch--HHHHHHHHhHhCCCCCHHHHHHHHHHHhccCc------H
Q 007329 448 -KCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSF--EALIFFRKMMLNLKPNSVTLVSILSACARIGA------L 515 (608)
Q Consensus 448 -g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~------~ 515 (608)
+++++++++++++.+ .|...|+.-...+.+.|+++ +++++++++++..+-|...|+.-...+...+. +
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 788899999888873 46677888788888888888 99999999996666688888877777777776 8
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH-HHHHHHhc-------CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP-AWNQFNSN-------ERDVSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
+++++.++.++...+. |...|+.+...+.+.|+..+ +.++.+++ ..+...+..++..|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999998887 88899999999999888444 55677765 236788999999999999999999999
Q ss_pred HHHHHcCCCCCc
Q 007329 588 RKMIDSKGNWRK 599 (608)
Q Consensus 588 ~~m~~~g~~p~~ 599 (608)
+.+.+. +.|-.
T Consensus 282 ~~l~~~-~Dpir 292 (306)
T 3dra_A 282 DLLKSK-YNPIR 292 (306)
T ss_dssp HHHHHT-TCGGG
T ss_pred HHHHhc-cChHH
Confidence 999863 45543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.9e-08 Score=101.46 Aligned_cols=167 Identities=7% Similarity=-0.113 Sum_probs=134.3
Q ss_pred HhcCChHHHHHHHhhCC--------C---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007329 344 LSFGNREEGEKVFSRME--------S---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACL 412 (608)
Q Consensus 344 ~~~~~~~~a~~~~~~~~--------~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 412 (608)
...|++++|++.+++.. + .+...|..+...|.+.|++++|+..|++..+.. .-+...+..+...+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999998876 2 456678888889999999999999999988764 22567888888899999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHH
Q 007329 413 GNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFR 489 (608)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (608)
|++++|...|+.+.+.. +.+...+..+..+|.+.|++++ .+.|++..+ .+...|..+..++.+.|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999998876 5567788889999999999999 888887663 355788889999999999999999999
Q ss_pred HhHhCCCCC-HHHHHHHHHHHhccCc
Q 007329 490 KMMLNLKPN-SVTLVSILSACARIGA 514 (608)
Q Consensus 490 ~m~~~~~p~-~~~~~~ll~~~~~~~~ 514 (608)
+.. ...|+ ...+..+..++...++
T Consensus 559 ~al-~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVP-PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSC-TTSTTHHHHHHHHHHHTC----
T ss_pred hhc-ccCcccHHHHHHHHHHHHccCC
Confidence 987 44554 5677777778766555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=9.3e-09 Score=85.53 Aligned_cols=126 Identities=6% Similarity=-0.136 Sum_probs=104.0
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHH
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (608)
...+...|++++|+..++......+.+...+..+...|.+.|++++|.+.++++++..+. +...|..++.+|.+.|+++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 344556788999999999887322234556778899999999999999999999998776 7889999999999999999
Q ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCch
Q 007329 552 PAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEF-FRKMIDSKGNWRKL 600 (608)
Q Consensus 552 ~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~p~~~ 600 (608)
+|...|+++ +.+...|..+...|...|++++|.+. +++.++. .|++.
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~ 134 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSP 134 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCH
Confidence 999999998 44688999999999999999876655 6888875 78775
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-07 Score=82.15 Aligned_cols=124 Identities=15% Similarity=-0.072 Sum_probs=101.3
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHH
Q 007329 437 ANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALM 516 (608)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~ 516 (608)
+..+...+...|++++|.+.|++..+++...|..+...+...|++++|++.|++.....+.+...+..+..++...|+++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence 34456677788999999999998888888888888899999999999999999888445567788888889999999999
Q ss_pred HHHHHHHHHHHhCCCCC---------------ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 517 CGKEIHAHALRIGVAFD---------------GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+|.+.++++.+..+... ...+..+..+|.+.|++++|.+.|+++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999998887654311 156777888888889999998888887
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-07 Score=77.44 Aligned_cols=92 Identities=11% Similarity=-0.026 Sum_probs=52.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHh
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAE 576 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 576 (608)
.+..+...+.+.|++++|...|+++.+..+. ++..|..+..+|.+.|++++|.+.|+++ +.++..|..+..+|..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4445555555556666666666655555443 4555555566666666666666666555 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 007329 577 RGQGALAEEFFRKMIDS 593 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~ 593 (608)
.|++++|.+.|++.++.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.2e-07 Score=80.63 Aligned_cols=127 Identities=11% Similarity=-0.027 Sum_probs=110.7
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.+..+...+...|++++|++.|++.. .|+...+..+..++...|++++|...++++.+..+. +...+..++.+|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHH
Confidence 34566778889999999999999874 668899999999999999999999999999988654 67788899999999
Q ss_pred cCCHHHHHHHHHhc----CCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 007329 547 CGRMKPAWNQFNSN----ERDV----------------SAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRK 599 (608)
Q Consensus 547 ~g~~~~A~~~~~~~----~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 599 (608)
.|++++|.+.++++ +.+. ..|..+...|...|++++|.+.|++..+. .|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 99999999999988 3233 78999999999999999999999999875 5544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-07 Score=86.76 Aligned_cols=183 Identities=8% Similarity=-0.096 Sum_probs=94.7
Q ss_pred CCCchHHHHHHHHHHHC------CCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHhCC---CC--chhHHHHHH
Q 007329 377 SVLPDKAVETYQMMEAE------GSMPDE----ITIASVLSACACLGNLDLGIKLHQLAMRTGL---IS--YIIIANTLI 441 (608)
Q Consensus 377 ~~~~~~a~~~~~~m~~~------g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li 441 (608)
.|++++|.+++++..+. ++.++. ..|......|...|++++|...+....+... .+ -...|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999877652 112332 2455555556666666666666665543211 00 123455555
Q ss_pred HHhHhcCCHHHHHHHHccCCC-------CC--cccHHHHHHHHHhCCCchHHHHHHHHhHh---CC-CC--CHHHHHHHH
Q 007329 442 DMYSKCKCIDKALEVFHQIPD-------KN--VISWTSIILGLRLNNRSFEALIFFRKMML---NL-KP--NSVTLVSIL 506 (608)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~-~p--~~~~~~~ll 506 (608)
.+|.+.|++++|...|++..+ +. ..+++.+...|.. |++++|++.|++.+. .. .+ ...++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 566666666666655554321 10 1344455555555 666666666666551 11 00 123455555
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCC-----ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 507 SACARIGALMCGKEIHAHALRIGVAFD-----GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..+...|++++|...++++.+.....+ ...+..++.++...|++++|...|++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666665554321111 113344445555556666666666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=7.9e-07 Score=79.63 Aligned_cols=180 Identities=8% Similarity=-0.136 Sum_probs=116.4
Q ss_pred hhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCch--hHHHH
Q 007329 364 VVSWTTMISCYEGSVLPDKAVETYQMMEAEGSM-PD-EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYI--IIANT 439 (608)
Q Consensus 364 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 439 (608)
...+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++.+.|++++|...++.+.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344556677889999999999999999986322 21 357778889999999999999999999986533221 23444
Q ss_pred HHHHhHh------------------cCCHHHHHHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC
Q 007329 440 LIDMYSK------------------CKCIDKALEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498 (608)
Q Consensus 440 li~~~~~------------------~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~ 498 (608)
+..++.+ .|+.++|...|+++.+.++ ..+.+.. .+..+... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~--------------~l~~~~~~---~ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK--------------RLVFLKDR---L 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH--------------HHHHHHHH---H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH--------------HHHHHHHH---H
Confidence 4444443 5789999999998875332 2222111 11111000 0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
......+...+.+.|++++|...++++++..+... ...+..++.+|.+.|++++|.+.++.+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 01123445566777778888877777776544321 245666777778888888888777766
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-07 Score=81.52 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=41.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHh---CC-CC--CccHHHHHHHHhHhcCCHHHHHHHHHhc------CCCH----
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRI---GV-AF--DGFLPNALLDMYVRCGRMKPAWNQFNSN------ERDV---- 564 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~---- 564 (608)
++..+...+...|++++|.+.+++..+. .. .+ ....+..+...+...|++++|.+.+++. ..+.
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444455555555555555444432 00 10 1223444445555555555555555443 1111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 565 SAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 565 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
.++..+...+...|++++|.+.+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 123445555555555555555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.8e-07 Score=72.93 Aligned_cols=98 Identities=5% Similarity=-0.029 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHH
Q 007329 500 VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYA 575 (608)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~ 575 (608)
..+......+.+.|++++|.+.|+++++..+. +...|..+..+|.+.|++++|++.++++ +.+...|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45666777777888888888888888777655 6677777888888888888888888777 446778888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 576 ERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 576 ~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..|++++|.+.|++.++. .|++.
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HCCCHHHHHHHHHHHHHH--CcCCH
Confidence 888888888888888874 77765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-07 Score=75.82 Aligned_cols=101 Identities=16% Similarity=0.012 Sum_probs=87.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 007329 464 NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDM 543 (608)
Q Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 543 (608)
+...|..+...+.+.|++++|+..|++.....+.+...|..+..++...|++++|...++++.+..+. ++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 34567778888999999999999999998555667888999999999999999999999999998776 77888899999
Q ss_pred hHhcCCHHHHHHHHHhc---CCCHH
Q 007329 544 YVRCGRMKPAWNQFNSN---ERDVS 565 (608)
Q Consensus 544 ~~~~g~~~~A~~~~~~~---~~~~~ 565 (608)
|.+.|++++|.+.|+++ .||..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999988 66654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-07 Score=75.96 Aligned_cols=126 Identities=9% Similarity=-0.101 Sum_probs=100.4
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++++.+..+. +...+..++.+|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 346667778888888999999888888445557888888888999999999999999998887654 5677888889999
Q ss_pred hcCCHHHHHHHHHhc----CCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 007329 546 RCGRMKPAWNQFNSN----ERDVSAWNILLTG--YAERGQGALAEEFFRKMID 592 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~----~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 592 (608)
..|++++|.+.++++ +.+...+..+..+ +...|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999887 4456666444444 7788999999999887754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-07 Score=87.15 Aligned_cols=152 Identities=9% Similarity=0.001 Sum_probs=85.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCC---CC--chhHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----cc
Q 007329 401 TIASVLSACACLGNLDLGIKLHQLAMRTGL---IS--YIIIANTLIDMYSKCKCIDKALEVFHQIPD-----KN----VI 466 (608)
Q Consensus 401 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~ 466 (608)
+|..+...|...|++++|...++...+... .+ ...++..+..+|.+ |++++|++.|++..+ .+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 344444555555555555555554443210 11 12344455555555 666666666655431 11 24
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHh---CCC--CC-HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC-c---cH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMML---NLK--PN-SVTLVSILSACARIGALMCGKEIHAHALRIGVAFD-G---FL 536 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~---~~ 536 (608)
+++.+...|.+.|++++|++.|++... ... ++ ...+..+..++...|++++|...+++.. ..+... . ..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 566777788888888888888888771 111 11 2255666667777789999999988887 433211 1 12
Q ss_pred HHHHHHHhHhcCCHHHHHH
Q 007329 537 PNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 537 ~~~l~~~~~~~g~~~~A~~ 555 (608)
...++.+| ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 33445544 5677666655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-07 Score=95.00 Aligned_cols=152 Identities=13% Similarity=-0.031 Sum_probs=83.3
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVF 457 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (608)
|++++|+..+++..+.. .-+...+..+...+...|++++|.+.++...+.. +.+...+..+..+|.+.|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666666666665542 1235556666666666667777776666666544 334556666666666667777776666
Q ss_pred ccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHhCCC
Q 007329 458 HQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARI---GALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 458 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~ 531 (608)
++..+ .+...|..+..++.+.|++++|.+.|++..+..+.+...+..+..++... |++++|.+.++++.+.++.
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 65542 23455666666666667777777766666633344555666666666666 6666666666666665544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.4e-06 Score=78.94 Aligned_cols=153 Identities=12% Similarity=-0.064 Sum_probs=111.4
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCC---c------ccHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC----HHHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKN---V------ISWTSIILGLRLNNRSFEALIFFRKMML--NLKPN----SVTLVS 504 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~----~~~~~~ 504 (608)
.+..+...|++++|.+.+++..+.. . ..+..+...+...+++++|+..|++... ...++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888887755321 1 1223455666677788999999998882 12223 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHh-----CCCC-CccHHHHHHHHhHhcCCHHHHHHHHHhc------C---CC-HHHHH
Q 007329 505 ILSACARIGALMCGKEIHAHALRI-----GVAF-DGFLPNALLDMYVRCGRMKPAWNQFNSN------E---RD-VSAWN 568 (608)
Q Consensus 505 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~---~~-~~~~~ 568 (608)
+..+|...|++++|...++++.+. +..+ ...++..++.+|.+.|++++|.+.++++ . +. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999999999999888742 1111 1236778889999999999999999877 1 11 67889
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 007329 569 ILLTGYAERGQ-GALAEEFFRKMID 592 (608)
Q Consensus 569 ~l~~~~~~~g~-~~~A~~~~~~m~~ 592 (608)
.+..+|...|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.1e-07 Score=71.72 Aligned_cols=105 Identities=6% Similarity=-0.103 Sum_probs=82.1
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.+......|.+.|++++|++.|++.+...+.+...|..+..++.+.|++++|+..++++++.++. +...|..++.+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 45566778888888888888888888555667788888888888888888888888888887665 56778888888888
Q ss_pred cCCHHHHHHHHHhc---CC-CHHHHHHHHH
Q 007329 547 CGRMKPAWNQFNSN---ER-DVSAWNILLT 572 (608)
Q Consensus 547 ~g~~~~A~~~~~~~---~~-~~~~~~~l~~ 572 (608)
.|++++|.+.|+++ .| +...+..|..
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 99999999888887 44 5555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-06 Score=82.61 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=66.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhC----CCCC--HHHHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCC-----ccHHH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLN----LKPN--SVTLVSILSACARIGALMCGKEIHAHALRI-GVAFD-----GFLPN 538 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~----~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~-----~~~~~ 538 (608)
+...+...|++++|++.+++...- ..+. ..+++.+...|...|++++|...++++.+. ...|+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 334455556666666666665511 1111 335566666666666666666666665521 01111 13555
Q ss_pred HHHHHhHhcCCHHHHHHHHHhc---CCC-------HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 007329 539 ALLDMYVRCGRMKPAWNQFNSN---ERD-------VSAWNILLTGYAERGQGALA-EEFFRKMI 591 (608)
Q Consensus 539 ~l~~~~~~~g~~~~A~~~~~~~---~~~-------~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 591 (608)
.++.+|.+.|++++|.+.++++ .++ ..+|..+...|...|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6666666666666666666655 111 45566666666666776666 55555543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.3e-06 Score=73.88 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC----CHHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK----CIDKALEVF 457 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 457 (608)
+|+..|++..+.| +...+..+...|...+++++|...|+...+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 55566666666666677777777776666554 33444445555554 3 455555544
Q ss_pred ccC
Q 007329 458 HQI 460 (608)
Q Consensus 458 ~~~ 460 (608)
++.
T Consensus 77 ~~A 79 (212)
T 3rjv_A 77 EKA 79 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=77.48 Aligned_cols=161 Identities=12% Similarity=-0.045 Sum_probs=106.1
Q ss_pred CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHHHhCCCCchhHH
Q 007329 362 KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLG----NLDLGIKLHQLAMRTGLISYIIIA 437 (608)
Q Consensus 362 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 437 (608)
.+...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|.++|+...+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 345556666666666777777777777777665 55566666666666 5 7788888888776654 34555
Q ss_pred HHHHHHhHh----cCCHHHHHHHHccCCCCC-----cccHHHHHHHHHh----CCCchHHHHHHHHhHhCCCCCHHHHHH
Q 007329 438 NTLIDMYSK----CKCIDKALEVFHQIPDKN-----VISWTSIILGLRL----NNRSFEALIFFRKMMLNLKPNSVTLVS 504 (608)
Q Consensus 438 ~~li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~p~~~~~~~ 504 (608)
..|...|.. .+++++|.+.|++..+.+ +..+..|...|.. .+++++|+..|++.... +.+...+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 677777777777766433 4566667777766 66777788888777632 334445566
Q ss_pred HHHHHhcc-C-----cHHHHHHHHHHHHHhCC
Q 007329 505 ILSACARI-G-----ALMCGKEIHAHALRIGV 530 (608)
Q Consensus 505 ll~~~~~~-~-----~~~~a~~~~~~~~~~~~ 530 (608)
|...|... | ++++|...+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66665432 2 77778888777777664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.6e-05 Score=71.44 Aligned_cols=219 Identities=8% Similarity=-0.011 Sum_probs=163.9
Q ss_pred HHHHHhCC-ChHHHHHHHHHHhhcCCCCC-hhhHHHHHHHhhccC--CchhhhHHHHHHHHhcCCcchhHHhHHHHHh--
Q 007329 67 LNELCLNG-SLEQALKYLDSMQELNICVD-EDALVNLVRLCEWKR--GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMF-- 140 (608)
Q Consensus 67 l~~~~~~~-~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 140 (608)
+.+..+.| ..++|+.+++.++... |+ ..+|+.--.++...+ ++++++..++.++...+. +..+|+.-...+
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 44444444 4578999999998854 54 445666666777777 999999999999988765 455566555555
Q ss_pred --hhc---CChhhHHHHHcccCC---CCcchHHHHHHHHHhcCChh--HHHHHHHHHHhcCCCCCCcchHHHHHHHhcCC
Q 007329 141 --VKF---GDLGHAWYVFGKMCD---RDLFSWNVLIGGYAKAGFFD--EALSLYQRMFWVGGVKPDVYTFPCVLRTCGGV 210 (608)
Q Consensus 141 --~~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 210 (608)
... +++++++..++++.+ .|..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+...
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhc
Confidence 444 788999999998844 46667777777777888888 9999999999876 56777777766666666
Q ss_pred CC------hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH-HHHHHccCCC------CCHhHHHHHHHHHHhcC
Q 007329 211 PD------LKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVR-ARLVFDGMPK------RDRISWNAMISGYFENG 277 (608)
Q Consensus 211 ~~------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~------~~~~~~~~li~~~~~~~ 277 (608)
+. ++++.+.++.++... +-|...|+-+-..+.+.|+... +..+.+++.+ +++..+..++..|.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 66 788888888888875 6678888888888888887444 4556665543 36677888888888888
Q ss_pred ChhHHHHHHHHHHH
Q 007329 278 EYMKGLMLFIMMRE 291 (608)
Q Consensus 278 ~~~~a~~~~~~m~~ 291 (608)
+.++|.++++.+.+
T Consensus 273 ~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 273 KYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888888765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.8e-07 Score=76.60 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=85.1
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHH-hHhcCCH--HH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDM-YVRCGRM--KP 552 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~ 552 (608)
...|++++|+..+++.....+.+...+..+...+...|++++|...++++.+..+. +...+..+..+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 34677777888888777444556777788888888888888888888888776554 55666677777 6777887 88
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 553 AWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 553 A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...++++ +.+...|..+...|...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888777 445677788888888888888888888888775
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=76.64 Aligned_cols=92 Identities=9% Similarity=0.039 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
+..+...+.+.|++++|+..|++.....+.+...+..+..++...|++++|...++++.+..+. ++..+..+..+|...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 3334444444555555555555444223334444444444444445555555555444444332 334444444444444
Q ss_pred CCHHHHHHHHHhc
Q 007329 548 GRMKPAWNQFNSN 560 (608)
Q Consensus 548 g~~~~A~~~~~~~ 560 (608)
|++++|.+.|+++
T Consensus 103 g~~~~A~~~~~~a 115 (148)
T 2vgx_A 103 GELAEAESGLFLA 115 (148)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-06 Score=70.54 Aligned_cols=113 Identities=3% Similarity=-0.146 Sum_probs=82.6
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
...|..+...+...|++++|++.|++.....+.+...+..+...+...|++++|.+.++++.+..+. +...+..+..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 3456677777888888888888888887444456777778888888888888888888888776544 566777777888
Q ss_pred HhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcC
Q 007329 545 VRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERG 578 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g 578 (608)
.+.|++++|.+.++++ .| +...+..+...+...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 8888888888888776 33 4556666666666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-06 Score=68.51 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=46.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.|..+...+...|++++|.+.++++....+.+..++..+...+...|++++|..+++++.+..+. +...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH
Confidence 34444445555555555555555554222334444555555555555555555555555544322 33444445555555
Q ss_pred cCCHHHHHHHHHhc
Q 007329 547 CGRMKPAWNQFNSN 560 (608)
Q Consensus 547 ~g~~~~A~~~~~~~ 560 (608)
.|++++|.+.++++
T Consensus 90 ~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 90 QGDYDEAIEYYQKA 103 (125)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHH
Confidence 55555555555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=69.67 Aligned_cols=114 Identities=11% Similarity=-0.053 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..|..+...+...|++++|++.|++.....+.+...+..+...+...|++++|.+.++++.+..+. +...+..++.+|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 345566667777777777777777777444456677777777777788888888888877776543 4566777777788
Q ss_pred hcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCH
Q 007329 546 RCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQG 580 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 580 (608)
+.|++++|.+.++++ +.+...+..+...+...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 888888888888776 34566777777777766654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-06 Score=82.73 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=91.8
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC---------------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN---------------SVTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
..|..+...+.+.|++++|+..|++.+.-.+.+ ...|..+..++.+.|++++|...++++++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456666677777777777777777777222222 46777888888888888888888888887765
Q ss_pred CCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 007329 531 AFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALA-EEFFRKMI 591 (608)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 591 (608)
. +...+..+..+|...|++++|.+.|+++ +.+...+..+...+...|+.++| ..++++|.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 6677777888888888888888888877 44677788888888888888777 45566664
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.9e-07 Score=80.63 Aligned_cols=152 Identities=8% Similarity=-0.007 Sum_probs=102.9
Q ss_pred HHhHhcCCHHHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCH----------------HHH
Q 007329 442 DMYSKCKCIDKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNS----------------VTL 502 (608)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~----------------~~~ 502 (608)
......|+++++.+.++.-.+. ....+..+...+...|++++|++.|++.....+.+. ..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344456667666666543321 234566777888899999999999999883332232 678
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 578 (608)
..+..++...|++++|...++++++..+. +...+..+..+|...|++++|.+.|+++ +.+...+..+...+...|
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 88889999999999999999999987654 6678888999999999999999999988 446788888888888888
Q ss_pred CHHHHH-HHHHHHHHcC
Q 007329 579 QGALAE-EFFRKMIDSK 594 (608)
Q Consensus 579 ~~~~A~-~~~~~m~~~g 594 (608)
+.+++. ..+..|...|
T Consensus 171 ~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 171 EARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHC-------------
T ss_pred HHHHHHHHHHHHHhccc
Confidence 887777 6666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7.1e-05 Score=70.24 Aligned_cols=215 Identities=11% Similarity=-0.038 Sum_probs=155.4
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhc-C-C
Q 007329 374 YEGSVLPDKAVETYQMMEAEGSMPD-EITIASVLSACACLG-NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKC-K-C 449 (608)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 449 (608)
....+..++|+++++++...+ |+ ...|+.--..+...| .+++++.+++.+.... +-+..+|+.-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 344555678899998888764 44 344555555566667 5889999999888766 44556666555555555 6 7
Q ss_pred HHHHHHHHccCCCC---CcccHHHHHHHHHhCCCch--------HHHHHHHHhHhCCCCCHHHHHHHHHHHhccCc----
Q 007329 450 IDKALEVFHQIPDK---NVISWTSIILGLRLNNRSF--------EALIFFRKMMLNLKPNSVTLVSILSACARIGA---- 514 (608)
Q Consensus 450 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~---- 514 (608)
.++++++++++.+. |...|+.-...+.+.|.++ ++++.++++++..+-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccc
Confidence 88999999988854 4456666666666666666 89999999996566688888888888877775
Q ss_pred ---HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCH--------------------HHHHHHHHhc---C-------
Q 007329 515 ---LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM--------------------KPAWNQFNSN---E------- 561 (608)
Q Consensus 515 ---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~---~------- 561 (608)
++++++.+++++...+. |...|+-+-..+.+.|+- .+..+...++ .
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 68899999999988777 788888777777776653 3344444444 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 562 RDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 562 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+....+.-|+..|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4577888999999999999999999999875
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=68.69 Aligned_cols=92 Identities=10% Similarity=-0.139 Sum_probs=51.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHh
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAE 576 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 576 (608)
.+..+...+.+.|++++|...++++++..+. +...|..+..+|.+.|++++|.+.++++ +.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3444445555555555555555555554433 4455555555555666666666655555 3345555566666666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 007329 577 RGQGALAEEFFRKMIDS 593 (608)
Q Consensus 577 ~g~~~~A~~~~~~m~~~ 593 (608)
.|++++|.+.|++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 66666666666665553
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-07 Score=82.05 Aligned_cols=121 Identities=7% Similarity=-0.128 Sum_probs=61.6
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcC
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCG 548 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 548 (608)
+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..++...+.. .|. ...+..+..++.+.|
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~-~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV-AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC-TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence 34445555555555555555542 22333244444445555566666666665332211 110 123444556666666
Q ss_pred CHHHHHHHHHhc--C---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 549 RMKPAWNQFNSN--E---RD--VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 549 ~~~~A~~~~~~~--~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++++|+..|+++ . |. ...+.....++.+.|+.++|..+|+++.+.
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666655 1 21 224455555666666666666666666654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-05 Score=73.41 Aligned_cols=160 Identities=11% Similarity=-0.039 Sum_probs=98.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc----hHHHHHHHhcCCCChhhHHHHHHHHHHhCCCC-c----hhHHHH
Q 007329 167 LIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY----TFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEA-D----VDVVNA 237 (608)
Q Consensus 167 li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~----~~~~~~ 237 (608)
.+..+...|++++|.+++++..+.....|+.. .+..+...+...|++++|.+.++...+..... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888877765432223321 22335555666677778887777777643221 2 225777
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC-------C---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-hhHHH
Q 007329 238 LITMYVKCGDLVRARLVFDGMPK-------R---DRISWNAMISGYFENGEYMKGLMLFIMMREV----LVDPD-FMTLS 302 (608)
Q Consensus 238 li~~~~~~g~~~~A~~~~~~~~~-------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~ 302 (608)
+...|...|++++|...|++..+ . ...+|..+...|.+.|++++|+..+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777777777766541 1 2236667777777778888777777766432 22222 34566
Q ss_pred HHHHHHhhcCC-hhhHHHHHHHHHH
Q 007329 303 SVISASELVGD-EKLGREVHGYVIK 326 (608)
Q Consensus 303 ~ll~~~~~~~~-~~~a~~~~~~~~~ 326 (608)
.+..++...|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 66666666673 4777776666543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-05 Score=73.78 Aligned_cols=121 Identities=9% Similarity=-0.049 Sum_probs=84.8
Q ss_pred HHHHhHhcCCHHHHHHHHccCCC-----CC----cccHHHHHHHHHhCCCchHHHHHHHHhH---hCCCCC----HHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPD-----KN----VISWTSIILGLRLNNRSFEALIFFRKMM---LNLKPN----SVTLV 503 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~----~~~~~ 503 (608)
+...+...|++++|...+++..+ .+ ..+|+.+...|...|++++|+..|++.. ...+.+ ..++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 44445556666666666554321 11 2366777788888888888888888876 222222 25788
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCC-----CccHHHHHHHHhHhcCCHHHH-HHHHHhc
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAF-----DGFLPNALLDMYVRCGRMKPA-WNQFNSN 560 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 560 (608)
.+...|...|++++|...++++.+..... -..+|..++.+|.+.|++++| ...++++
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 88999999999999999999887543111 145678889999999999999 7767765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=6.9e-07 Score=83.04 Aligned_cols=189 Identities=10% Similarity=-0.042 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHH
Q 007329 398 DEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILG 474 (608)
Q Consensus 398 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 474 (608)
+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...+++..+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666777777888888888888777765 44667777788888888888888888887664 244677778888
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
+...|++++|+..|++.....+.+...+...+....+ ..++. -+..........+......+...+ .|++++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 8888999999988888771111010011111111111 11111 122233334444566655554433 79999999
Q ss_pred HHHHhc---CCCH-HHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 007329 555 NQFNSN---ERDV-SAWNILLTGYAER-GQGALAEEFFRKMIDS 593 (608)
Q Consensus 555 ~~~~~~---~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 593 (608)
+.++++ .|+. .....+...+... +.+++|.++|++..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999887 5543 3444444445554 6788999999888653
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.8e-06 Score=67.18 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=41.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC----C----HHHHHHHHH
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER----D----VSAWNILLT 572 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~----~----~~~~~~l~~ 572 (608)
.+...+.+.|++++|++.|+++++..+. +...|..+..+|.+.|++++|++.++++ .| + ..+|..+..
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3444444444444444444444443332 3334444444444444444444444443 11 0 124445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 007329 573 GYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 573 ~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++...|++++|++.|++.++.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 555566666666666665554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.6e-06 Score=74.54 Aligned_cols=135 Identities=10% Similarity=-0.102 Sum_probs=97.2
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCC--CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC--HHHHHHHHHHHhc
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPD--KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN--SVTLVSILSACAR 511 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~--~~~~~~ll~~~~~ 511 (608)
....+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+....-..|. ...+..+..++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 344566778888999999999998874 332355566667888999999999998665211221 2367778888999
Q ss_pred cCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHH
Q 007329 512 IGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNIL 570 (608)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l 570 (608)
.|++++|+..|++.......|. ......+..++.+.|+.++|...|+++ .|+...+..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999998875332243 234556778888999999999999988 6664444444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.9e-06 Score=71.52 Aligned_cols=121 Identities=13% Similarity=-0.015 Sum_probs=67.9
Q ss_pred HHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcH
Q 007329 439 TLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGAL 515 (608)
Q Consensus 439 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~ 515 (608)
.+...+...|++++|...|++.. ..+...|..+...+...|++++|++.+++.....+.+...+..+..++...|++
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 33444444455555555444433 123345555556666666666666666666633344566666666677777777
Q ss_pred HHHHHHHHHHHHhCCCCCccHHH--HHHHHhHhcCCHHHHHHHHHhc
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPN--ALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
++|...++++.+..+. +...+. .++..+.+.|++++|.+.+++.
T Consensus 98 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 98 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777776665443 333332 2333356667777777666543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=72.04 Aligned_cols=93 Identities=9% Similarity=0.051 Sum_probs=55.2
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.+..+...+.+.|++++|+..|++.....+.+...|..+..++...|++++|...++++.+..+. ++..+..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 34445555666666666666666665333445555666666666666666666666666665543 44555556666666
Q ss_pred cCCHHHHHHHHHhc
Q 007329 547 CGRMKPAWNQFNSN 560 (608)
Q Consensus 547 ~g~~~~A~~~~~~~ 560 (608)
.|++++|.+.|+++
T Consensus 99 ~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 99 LGDLDGAESGFYSA 112 (142)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666666555
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=69.68 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=87.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC------ccHHHH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD------GFLPNA 539 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~ 539 (608)
..+..+...+.+.|++++|++.|++.++-.+.+...|..+..++...|++++|++.++++++..+... ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45778889999999999999999999955566788999999999999999999999999987654322 236777
Q ss_pred HHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHH
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN---ERDVSAWNIL 570 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l 570 (608)
++.+|...|++++|++.|++. .||+.....|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 888999999999999999987 6777655443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00021 Score=67.12 Aligned_cols=218 Identities=12% Similarity=0.039 Sum_probs=155.0
Q ss_pred HHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccC-CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhc-C-C
Q 007329 69 ELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKR-GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKF-G-D 145 (608)
Q Consensus 69 ~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 145 (608)
.+.+.+..++|+++++.++..... +..+|+.--.++...| ++++++..++.++...++ +..+|+.....+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 334456667899999999885532 4455666666777777 599999999999988765 667788777777776 7 8
Q ss_pred hhhHHHHHcccCCC---CcchHHHHHHHHHhcCChh--------HHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCC--
Q 007329 146 LGHAWYVFGKMCDR---DLFSWNVLIGGYAKAGFFD--------EALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPD-- 212 (608)
Q Consensus 146 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~-- 212 (608)
.++++.+++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccc
Confidence 89999999999664 4456665555555555666 8999999999875 5677788888877777775
Q ss_pred -----hhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH--------------------HHHHHHHccCCC-------
Q 007329 213 -----LKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL--------------------VRARLVFDGMPK------- 260 (608)
Q Consensus 213 -----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~------- 260 (608)
++++.+.++..+... +-|...|+-+-..+.+.|+. .........+..
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 678888888888775 56778888777777776653 334444444432
Q ss_pred --CCHhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007329 261 --RDRISWNAMISGYFENGEYMKGLMLFIMMRE 291 (608)
Q Consensus 261 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 291 (608)
+++..+..++..|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3556677777777777777778877777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5e-06 Score=65.90 Aligned_cols=109 Identities=17% Similarity=0.117 Sum_probs=62.0
Q ss_pred HHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC
Q 007329 437 ANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG 513 (608)
Q Consensus 437 ~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~ 513 (608)
+..+...+...|++++|.+.|+++. ..+...+..+...+...|++++|+..++++....+.+..++..+...+...|
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 3344444444444444444444433 1233445555666666666666666666666334445666777777777777
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
++++|...++++.+..+. +...+..+..++..
T Consensus 92 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 92 DYDEAIEYYQKALELDPN-NAEAKQNLGNAKQK 123 (125)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHh
Confidence 777777777777766543 34444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.7e-06 Score=67.64 Aligned_cols=93 Identities=10% Similarity=-0.104 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
...+..+...+...|++++|...++++.+..+. +...+..+..+|...|++++|...++++ +.+...|..+...|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 334444444444444444444444444444332 3344444444444555555555544444 22344444555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 007329 575 AERGQGALAEEFFRKMID 592 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~~ 592 (608)
...|++++|.+.|++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-06 Score=76.28 Aligned_cols=129 Identities=15% Similarity=0.081 Sum_probs=56.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcC---CC-CCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh----CCC--Cc
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVG---GV-KPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF----GYE--AD 231 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~--~~ 231 (608)
.++..+...+...|++++|+..+++..+.. +. +.....+..+...+...|++++|.+.+++..+. |.. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 344444455555555555555555443310 00 111223334444444455555555544444332 101 11
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHccCCC-----CC----HhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 232 VDVVNALITMYVKCGDLVRARLVFDGMPK-----RD----RISWNAMISGYFENGEYMKGLMLFIMMR 290 (608)
Q Consensus 232 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 290 (608)
...+..+...+...|++++|...+++... .+ ..++..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 23344455555555555555555544321 01 1223445555555556655555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.4e-06 Score=70.36 Aligned_cols=95 Identities=12% Similarity=-0.071 Sum_probs=76.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
...|..+...+.+.|++++|++.|++.+...+.+...|..+..++...|++++|...++++++..+. +...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3467777788888888888888888888444557778888888888888888888888888887655 567777888888
Q ss_pred HhcCCHHHHHHHHHhc
Q 007329 545 VRCGRMKPAWNQFNSN 560 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~ 560 (608)
...|++++|.+.|+++
T Consensus 90 ~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 8888888888888877
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=9.7e-06 Score=63.44 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=44.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhc
Q 007329 502 LVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAER 577 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~ 577 (608)
+..+...+...|++++|...++++.+..+. +...+..++.+|...|++++|.+.++++ +.+...|..+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 334444444445555555555544444322 3344444455555555555555555544 22344555555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 007329 578 GQGALAEEFFRKMID 592 (608)
Q Consensus 578 g~~~~A~~~~~~m~~ 592 (608)
|++++|.+.+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=64.38 Aligned_cols=93 Identities=6% Similarity=-0.126 Sum_probs=76.1
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.|..+...+.+.|++++|+..|++.+...+.+...|..+..++...|++++|...++++++..+. +...+..+..+|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 45666777888888888888888888545557788888888888899999999999988887655 56777888888899
Q ss_pred cCCHHHHHHHHHhc
Q 007329 547 CGRMKPAWNQFNSN 560 (608)
Q Consensus 547 ~g~~~~A~~~~~~~ 560 (608)
.|++++|.+.|+++
T Consensus 85 ~~~~~~A~~~~~~a 98 (126)
T 3upv_A 85 VKEYASALETLDAA 98 (126)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 99999999888877
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=7.7e-06 Score=67.42 Aligned_cols=95 Identities=12% Similarity=-0.077 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
+...+..+...+...|++++|...++++.+..+. +...|..+..+|...|++++|.+.|+++ +.++..|..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4445666777777888888888888887776655 6667777778888888888888888776 4456777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 007329 574 YAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 574 ~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...|++++|.+.|++.++.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.1e-06 Score=66.83 Aligned_cols=115 Identities=6% Similarity=-0.102 Sum_probs=77.9
Q ss_pred hhHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHh
Q 007329 434 IIIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACA 510 (608)
Q Consensus 434 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~ 510 (608)
...+..+...+.+.|++++|.+.|++..+ .+...|..+...+...|++++|++.+++.....+.+...+..+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34455555556666666666666665432 234556666777777777788888887777444556778888888888
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR 549 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (608)
..|++++|.+.++++.+..+. +...+..+..++.+.|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 888888888888888876554 45566667777766553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.3e-06 Score=66.19 Aligned_cols=90 Identities=10% Similarity=-0.061 Sum_probs=60.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcC
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERG 578 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 578 (608)
..+...+.+.|++++|...++++++..+. +...|..+..++...|++++|...++++ +.+...|..+..+|...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34445566667777777777766665544 5566666777777777777777777766 335667777777777777
Q ss_pred CHHHHHHHHHHHHHc
Q 007329 579 QGALAEEFFRKMIDS 593 (608)
Q Consensus 579 ~~~~A~~~~~~m~~~ 593 (608)
++++|...+++.++.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=81.83 Aligned_cols=92 Identities=13% Similarity=-0.030 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 007329 299 MTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYE 375 (608)
Q Consensus 299 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 375 (608)
..+..+...+...|++++|...++..++.. +.+...+..+..+|.+.|++++|...+++..+ .+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444555555566666666665555542 22444444555555555555555555554443 12334444444444
Q ss_pred cCCCchHHHHHHHHHH
Q 007329 376 GSVLPDKAVETYQMME 391 (608)
Q Consensus 376 ~~~~~~~a~~~~~~m~ 391 (608)
..|++++|+..|++..
T Consensus 84 ~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 84 EMESYDEAIANLQRAY 99 (281)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=5e-06 Score=66.57 Aligned_cols=114 Identities=9% Similarity=-0.049 Sum_probs=73.8
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARI 512 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~ 512 (608)
.+..+...+...|++++|...|++.. ..+...|..+...+...|++++|++.+++.....+.+...+..+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 34444445555555555555555443 123445566666677777777777777777743444567777777888888
Q ss_pred CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCH
Q 007329 513 GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM 550 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (608)
|++++|...++++.+..+. +...+..+..++.+.|++
T Consensus 94 ~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 8888888888888776544 556666777777776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=75.10 Aligned_cols=94 Identities=10% Similarity=0.017 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHH-HhccCcH--HHHHHHHHHHHHhCCCCCccHHHHHHH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA-CARIGAL--MCGKEIHAHALRIGVAFDGFLPNALLD 542 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~-~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~~l~~ 542 (608)
..|..+...|...|++++|+..|++.....+.+...+..+..+ +...|++ ++|...++++.+..+. +...+..+..
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~ 123 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN-EITALMLLAS 123 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3444444444445555555555555442222344444444444 4445554 5555555555554433 3344445555
Q ss_pred HhHhcCCHHHHHHHHHhc
Q 007329 543 MYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~ 560 (608)
+|...|++++|...++++
T Consensus 124 ~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHH
Confidence 555555555555555554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.4e-06 Score=67.87 Aligned_cols=95 Identities=12% Similarity=-0.104 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
+...+..+...+...|++++|...++++.+.++. +...|..+..+|.+.|++++|...|+++ +.++..|..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3445566677778888888888888888877655 6677777888888888888888888877 4466777888888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 007329 574 YAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 574 ~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...|++++|.+.|++.++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.6e-06 Score=64.68 Aligned_cols=93 Identities=11% Similarity=-0.027 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CC--CHHHHHHHHHH
Q 007329 500 VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ER--DVSAWNILLTG 573 (608)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~~~~~~~l~~~ 573 (608)
..+..+...+...|++++|...++++.+..+. +...+..+..+|...|++++|.+.++++ +. +...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34445555666666666666666666665443 4455666677777777777777777666 33 46677777777
Q ss_pred HHhc-CCHHHHHHHHHHHHHc
Q 007329 574 YAER-GQGALAEEFFRKMIDS 593 (608)
Q Consensus 574 ~~~~-g~~~~A~~~~~~m~~~ 593 (608)
+... |++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 7777 8888888888777765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-05 Score=62.60 Aligned_cols=108 Identities=12% Similarity=-0.076 Sum_probs=90.8
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
...|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++++.+..+. +...+..+..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 3467778889999999999999999998555567888999999999999999999999999987654 677888899999
Q ss_pred HhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 545 VRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
...|++++|.+.++++ +.+...+..+...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9999999999999988 3355555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5.7e-06 Score=79.00 Aligned_cols=144 Identities=8% Similarity=-0.095 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLN 478 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (608)
...+..+...+.+.|+++.|...|+..++........ ..+.+.++- ......|..+..+|.+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~~----~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQ----ALRLASHLNLAMCHLKL 209 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHHH----HHHHHHHHHHHHHHHHc
Confidence 3455566666666677777777666666543211100 000000000 00135677788888888
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHH-HHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPA-WNQF 557 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~ 557 (608)
|++++|+..+++.+.-.+.+...|..+..++...|++++|...++++++..+. +...+..+..++.+.|++++| ...+
T Consensus 210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~ 288 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLY 288 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888988888888545567888888999999999999999999999887665 567788888889999998888 4455
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
++|
T Consensus 289 ~~~ 291 (336)
T 1p5q_A 289 ANM 291 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=6.2e-06 Score=66.07 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=62.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC--CC----ccHHHHH
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA--FD----GFLPNAL 540 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~----~~~~~~l 540 (608)
.|..+...+...|++++|+..|++.....+.+...+..+...+...|++++|...++++.+..+. ++ ...+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 34555566666666666666666666333445566666666666667777777666666654332 11 4455556
Q ss_pred HHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHH
Q 007329 541 LDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLT 572 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~ 572 (608)
+.+|.+.|++++|.+.++++ .|+...+..+..
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 120 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66666666666666666665 445544444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-05 Score=66.94 Aligned_cols=95 Identities=12% Similarity=-0.060 Sum_probs=46.5
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc
Q 007329 435 IIANTLIDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACAR 511 (608)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~ 511 (608)
..+..+...+.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..|++.+...+.+...|..+..++..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344444455555555555555554431 2334444555555555555555555555552223344455555555555
Q ss_pred cCcHHHHHHHHHHHHHhC
Q 007329 512 IGALMCGKEIHAHALRIG 529 (608)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~ 529 (608)
.|++++|.+.++++++..
T Consensus 92 ~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 555555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-05 Score=65.05 Aligned_cols=96 Identities=8% Similarity=-0.093 Sum_probs=73.5
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 007329 464 NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDM 543 (608)
Q Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 543 (608)
+...|..+...+...|++++|+..|++.+...+.+...+..+..++...|++++|...++++.+..+. +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 44566677777788888888888888877444556777788888888888888888888888877654 56677778888
Q ss_pred hHhcCCHHHHHHHHHhc
Q 007329 544 YVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 544 ~~~~g~~~~A~~~~~~~ 560 (608)
|...|++++|.+.|+++
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 88888888888888776
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-05 Score=63.65 Aligned_cols=94 Identities=12% Similarity=-0.029 Sum_probs=53.7
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHH
Q 007329 465 VISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN----SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNAL 540 (608)
Q Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 540 (608)
...+..+...+...|++++|++.|++.. ...|+ ...+..+..++...|++++|...++++.+..+. +...+..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL-GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 3445555666666666666666666666 33344 445555555666666666666666666554332 34445555
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
..+|...|++++|.+.|+++
T Consensus 106 a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55566666666666655554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00039 Score=64.89 Aligned_cols=218 Identities=11% Similarity=0.012 Sum_probs=139.6
Q ss_pred cCCCch-HHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccC----------ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 376 GSVLPD-KAVETYQMMEAEGSMPDEIT-IASVLSACACLG----------NLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 376 ~~~~~~-~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
+.|.++ +|+.+++.+... .|+..| |+.--..+...+ .+++++.+++.+.... +-+..+|+.-..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444443 567777776664 344332 222211121111 1566777777777665 4455666655555
Q ss_pred hHhcC--CHHHHHHHHccCCC---CCcccHHHHHHHHHhCCC-chHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc-----
Q 007329 444 YSKCK--CIDKALEVFHQIPD---KNVISWTSIILGLRLNNR-SFEALIFFRKMMLNLKPNSVTLVSILSACARI----- 512 (608)
Q Consensus 444 ~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~----- 512 (608)
+.+.| .+++++.+++++.+ .|...|+.-...+...|. ++++++.+++++...+-|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 55666 47888888887763 455677777777777777 48888888888855566777776665555443
Q ss_pred ---------CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc-----------CCHHHHHHHHHhc---CCCHHHHHH
Q 007329 513 ---------GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC-----------GRMKPAWNQFNSN---ERDVSAWNI 569 (608)
Q Consensus 513 ---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~---~~~~~~~~~ 569 (608)
+.++++++.+..++...+. |...|+-+-..+.+. +.++++++.++++ .||. .|..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l 275 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCL 275 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHH
Confidence 4578888888888887776 777777666655555 4578888888888 6653 3432
Q ss_pred HHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 570 LLT-----GYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 570 l~~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.. +....|..+++.+++.++++. .|...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--Dp~r~ 309 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA 309 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh--Ccchh
Confidence 222 222467788899999999874 66543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=9.9e-06 Score=64.03 Aligned_cols=93 Identities=13% Similarity=-0.112 Sum_probs=77.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR 546 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 546 (608)
.+..+...+.+.|++++|+..|++.+...+.+...+..+..++...|++++|+..++++.+..+. +...+..+..+|.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 45566777888889999999998888555567788888888888999999999999988887765 56677888888999
Q ss_pred cCCHHHHHHHHHhc
Q 007329 547 CGRMKPAWNQFNSN 560 (608)
Q Consensus 547 ~g~~~~A~~~~~~~ 560 (608)
.|++++|...++++
T Consensus 98 ~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 98 EHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999988887
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.1e-05 Score=74.86 Aligned_cols=190 Identities=11% Similarity=0.007 Sum_probs=108.0
Q ss_pred HHHHHcCCCchHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCc
Q 007329 371 ISCYEGSVLPDKAVETYQMMEAEGSMPD----------------EITIASVLSACACLGNLDLGIKLHQLAMRTG-LISY 433 (608)
Q Consensus 371 i~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~ 433 (608)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778889999998888887642211 1236667777888888888888777665421 1111
Q ss_pred h----hHHHHHHHHhHhcCCHHHHHHHHccCCC-----CC----cccHHHHHHHHHhCCCchHHHHHHHHhH---hCCC-
Q 007329 434 I----IIANTLIDMYSKCKCIDKALEVFHQIPD-----KN----VISWTSIILGLRLNNRSFEALIFFRKMM---LNLK- 496 (608)
Q Consensus 434 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~- 496 (608)
. .+.+.+...+...|+.+.|.++++.... .+ ..++..+...+...|++++|..++++.. .+..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333444556677777776665431 11 1245556666666777777777766665 1111
Q ss_pred -C-CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC--C-CCC---ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 497 -P-NSVTLVSILSACARIGALMCGKEIHAHALRIG--V-AFD---GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 497 -p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+ ...++..++..|...|++++|..+++++.... . .|. ...+..++..+...|++++|...|.++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 12355566666666677777766666655321 1 110 233445555566666666666665554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-05 Score=66.18 Aligned_cols=127 Identities=16% Similarity=0.102 Sum_probs=84.2
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHh--CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-C----cc
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMML--NLKPN----SVTLVSILSACARIGALMCGKEIHAHALRIGVAF-D----GF 535 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~----~~ 535 (608)
++..+...+...|++++|++.+++... ...++ ..++..+...+...|++++|...++++.+..... + ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344555566666666666666666651 11111 1356667777777788888888777766432111 1 34
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc------CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN------ERD----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.+..+...|...|++++|.+.+++. ..+ ...+..+...+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777888888888888888776 222 346778888889999999999999888753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-06 Score=75.13 Aligned_cols=94 Identities=15% Similarity=-0.046 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..|..+..+|.+.|++++|+..+++.+...+.+...+..+..++...|++++|...++++.+..+. +...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 567777888888899999999998888445567788888889999999999999999998887654 5667777777887
Q ss_pred hcCCHHHHH-HHHHhc
Q 007329 546 RCGRMKPAW-NQFNSN 560 (608)
Q Consensus 546 ~~g~~~~A~-~~~~~~ 560 (608)
..|+.+++. ..+..+
T Consensus 168 ~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 777777665 344443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.2e-05 Score=60.50 Aligned_cols=90 Identities=9% Similarity=-0.096 Sum_probs=39.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNS---VTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYV 545 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 545 (608)
+...+...|++++|+..|++.....+.+. ..+..+..++...|++++|...++++.+..+... ...+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 34444555555555555555542112122 2444444444455555555555555444433211 223334444444
Q ss_pred hcCCHHHHHHHHHhc
Q 007329 546 RCGRMKPAWNQFNSN 560 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~ 560 (608)
..|++++|.+.|+++
T Consensus 88 ~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 88 GEGKNTEAQQTLQQV 102 (129)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 444444444444444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.2e-05 Score=62.71 Aligned_cols=103 Identities=11% Similarity=-0.025 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHH
Q 007329 496 KPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF--DGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNI 569 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 569 (608)
+.+...+..+...+...|++++|.+.++++.+..+.. ....+..+..+|...|++++|.+.++++ +.+...|..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3467788889999999999999999999998765431 0677888999999999999999999987 447889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 570 LLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 570 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+...|...|++++|.+.|++..+. .|+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~ 133 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL--EPKNK 133 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 999999999999999999999986 66654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-05 Score=62.15 Aligned_cols=95 Identities=8% Similarity=0.063 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCC-------HHHH
Q 007329 499 SVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERD-------VSAW 567 (608)
Q Consensus 499 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-------~~~~ 567 (608)
...+..+...+...|++++|...++++.+..+. +...+..++..|...|++++|...++++ +.+ ..+|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 356778888999999999999999999987654 6778888999999999999999999988 223 7789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 568 NILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 568 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
..+...+...|++++|.+.|++..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999863
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.9e-05 Score=59.09 Aligned_cols=95 Identities=11% Similarity=-0.038 Sum_probs=71.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHhHhcCCHHHHHHHHHhc---CC-C---HHHHHHHHH
Q 007329 503 VSILSACARIGALMCGKEIHAHALRIGVAFDG---FLPNALLDMYVRCGRMKPAWNQFNSN---ER-D---VSAWNILLT 572 (608)
Q Consensus 503 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~---~~~~~~l~~ 572 (608)
..+...+...|++++|...++.+.+..+. +. ..+..++.+|.+.|++++|.+.++++ .| + ...+..+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556677788888888888888876554 23 46667788888888888888888877 34 3 566778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 573 GYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 573 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++...|++++|...|+++.+. .|+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 888888888888888888875 56554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.9e-05 Score=59.98 Aligned_cols=95 Identities=9% Similarity=-0.136 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC-CCccHHHHHHHHh
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA-FDGFLPNALLDMY 544 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~ 544 (608)
..|..+...+...|++++|+..|++.....+.+...+..+...+...|++++|.+.++++.+..+. .+...+..+..+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 445555555666666666666666665333345555666666666666666666666666654322 0244555566666
Q ss_pred Hhc-CCHHHHHHHHHhc
Q 007329 545 VRC-GRMKPAWNQFNSN 560 (608)
Q Consensus 545 ~~~-g~~~~A~~~~~~~ 560 (608)
.+. |++++|.+.++++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARA 103 (112)
T ss_dssp TTCSSCSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 666 6666666666655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=77.05 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHH-H
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGY-A 575 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~-~ 575 (608)
.|..+..++.+.|++++|...++++++..+. +...|..+..+|...|++++|.+.|+++ .| +...+..+.... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 7888889999999999999999999987654 6778888999999999999999999998 33 455666666553 3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 576 ERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 576 ~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..+..+.+..+|++|... .|++.
T Consensus 311 ~~~~~~~a~~~~~~~l~~--~p~~~ 333 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKG--KDEGG 333 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHhhCC--CCCCC
Confidence 456778889999999865 55543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-05 Score=78.11 Aligned_cols=119 Identities=10% Similarity=-0.035 Sum_probs=57.4
Q ss_pred hHHHHHHHHhHhcCCHHHHHHHHccCCC--C-C---------------cccHHHHHHHHHhCCCchHHHHHHHHhHhCCC
Q 007329 435 IIANTLIDMYSKCKCIDKALEVFHQIPD--K-N---------------VISWTSIILGLRLNNRSFEALIFFRKMMLNLK 496 (608)
Q Consensus 435 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 496 (608)
..+..+...|.+.|++++|...|++..+ | + ...|..+..+|.+.|++++|+..+++.+...+
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3444555555566666666665555431 1 1 23444455555555555555555555553233
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 497 PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 497 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
.+...|..+..++...|++++|...|+++++..+. +...+..+..++.+.|+.++|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555544332 3344444555555555544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=8.1e-06 Score=81.95 Aligned_cols=113 Identities=10% Similarity=-0.078 Sum_probs=54.5
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
+.+.|++++|++.|++..+..+.+...+..+..++.+.|++++|.+.++++.+..+. +...+..+..+|.+.|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 334455555555555555323334555555555555555555555555555554332 3444555555555555555555
Q ss_pred HHHHhc---C-CCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007329 555 NQFNSN---E-RDVSAWNILLTG--YAERGQGALAEEFFR 588 (608)
Q Consensus 555 ~~~~~~---~-~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 588 (608)
+.++++ . .+...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555554 2 233334444333 455555555555555
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00039 Score=64.93 Aligned_cols=186 Identities=9% Similarity=-0.034 Sum_probs=139.2
Q ss_pred ccCChH-HHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCC----------HHHHHHHHccCCC---CCcccHHHHHHHHH
Q 007329 411 CLGNLD-LGIKLHQLAMRTGLISYIIIANTLIDMYSKCKC----------IDKALEVFHQIPD---KNVISWTSIILGLR 476 (608)
Q Consensus 411 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 476 (608)
+.|.++ +|+.+.+.++..+ +-+..+|+.--..+...+. +++++.+++.+.. .+..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 445544 7888888888765 3333444433333322222 5778888887763 46678888777888
Q ss_pred hCCC--chHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCc-HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc------
Q 007329 477 LNNR--SFEALIFFRKMMLNLKPNSVTLVSILSACARIGA-LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC------ 547 (608)
Q Consensus 477 ~~~~--~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------ 547 (608)
..++ ++++++++.++....+-|...|+.-...+...|. ++++++.+..+++..+. |...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc
Confidence 8884 7899999999996667788888888888888888 58999999999998877 778888777666655
Q ss_pred --------CCHHHHHHHHHhc----CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCch
Q 007329 548 --------GRMKPAWNQFNSN----ERDVSAWNILLTGYAER-----------GQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 548 --------g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.++++++.++++ +.|...|+-+-..+.+. +.++++++.++++.+. .||..
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~ 272 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENK 272 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccccc
Confidence 5688999999887 66888998766666555 4689999999999985 88876
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.9e-05 Score=76.98 Aligned_cols=115 Identities=13% Similarity=-0.014 Sum_probs=76.7
Q ss_pred HhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 443 MYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
.+.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.+++..+..+.+...+..+..++...|++++|.
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4455666666666666554 2235567777777777777888888887777545556777778888888888888888
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHH--hHhcCCHHHHHHHHH
Q 007329 520 EIHAHALRIGVAFDGFLPNALLDM--YVRCGRMKPAWNQFN 558 (608)
Q Consensus 520 ~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 558 (608)
+.++++.+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888776554 44555555555 777788888888877
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.8e-05 Score=63.70 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhC------------------CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHh
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLN------------------LKPNSVTLVSILSACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 528 (608)
.+......+.+.|++++|+..|.+.+.- .+.+...|..+..++.+.|++++|...++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4556667777788888888888777621 1112245555666666666666666666666665
Q ss_pred CCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 529 GVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+. +...|..++.+|...|++++|.+.|+++
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 443 4555556666666666666666666655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.96 E-value=3.7e-05 Score=74.23 Aligned_cols=87 Identities=10% Similarity=-0.019 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHH
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTG 573 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~ 573 (608)
+...|..+..++.+.|++++|.+.++++++..+. +...+..+..+|.+.|++++|.+.|+++ +.+...+..+...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456667777777777777777777777765543 4566667777777778888887777776 3356666777777
Q ss_pred HHhcCCHHHHHH
Q 007329 574 YAERGQGALAEE 585 (608)
Q Consensus 574 ~~~~g~~~~A~~ 585 (608)
+...++.+++..
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=9.8e-05 Score=73.35 Aligned_cols=185 Identities=8% Similarity=-0.103 Sum_probs=133.8
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--C---Ch---------------hhHHHHHHHHHcCCCchHHHHHHHHHHHCC-CCCC
Q 007329 340 IKMYLSFGNREEGEKVFSRMES--K---DV---------------VSWTTMISCYEGSVLPDKAVETYQMMEAEG-SMPD 398 (608)
Q Consensus 340 ~~~~~~~~~~~~a~~~~~~~~~--~---~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~ 398 (608)
...+.+.|++++|++.|..+.+ + +. ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999988754 1 10 236778889999999999999998876531 1222
Q ss_pred HH----HHHHHHHHHHccCChHHHHHHHHHHHHh----CCC-CchhHHHHHHHHhHhcCCHHHHHHHHccCC----C---
Q 007329 399 EI----TIASVLSACACLGNLDLGIKLHQLAMRT----GLI-SYIIIANTLIDMYSKCKCIDKALEVFHQIP----D--- 462 (608)
Q Consensus 399 ~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~--- 462 (608)
.. ..+.+-..+...|+.+.+..++...... +.. .-..++..+...|...|++++|..++++.. .
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2222333344678999999999877642 222 224577889999999999999999988754 1
Q ss_pred -C-CcccHHHHHHHHHhCCCchHHHHHHHHhH---hCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHH
Q 007329 463 -K-NVISWTSIILGLRLNNRSFEALIFFRKMM---LNLKPN----SVTLVSILSACARIGALMCGKEIHAH 524 (608)
Q Consensus 463 -~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~---~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 524 (608)
+ ....|..++..|...|++++|..++++.. .....+ ...+..+...+...+++++|...+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 1 12478888999999999999999999987 223222 23566777788889999999887764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=1e-05 Score=63.56 Aligned_cols=82 Identities=11% Similarity=0.047 Sum_probs=54.3
Q ss_pred CCCchHHHHHHHHhHhC---CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 478 NNRSFEALIFFRKMMLN---LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
.|++++|+..|++.+.. .+.+...+..+..++...|++++|...++++++..+. +...+..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 56777788888777722 1224456667777777777777777777777776655 4566666777777777777777
Q ss_pred HHHHhc
Q 007329 555 NQFNSN 560 (608)
Q Consensus 555 ~~~~~~ 560 (608)
+.++++
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=7.3e-05 Score=62.60 Aligned_cols=95 Identities=13% Similarity=-0.045 Sum_probs=53.4
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCC---------------------CcccHHHHHHHHHhCCCchHHHHHHHHhHhC
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDK---------------------NVISWTSIILGLRLNNRSFEALIFFRKMMLN 494 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 494 (608)
.+......+.+.|++++|...|.+..+- +...|..+..+|.+.|++++|+..+++.+.-
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3445555566666666666655544311 1134555556666666666666666666533
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 495 LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
.+.+...|..+..++...|++++|...++++.+..+
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 344455666666666666666666666666665543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-05 Score=61.39 Aligned_cols=82 Identities=12% Similarity=0.013 Sum_probs=54.1
Q ss_pred cCcHHHHHHHHHHHHHhCC--CCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007329 512 IGALMCGKEIHAHALRIGV--AFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEE 585 (608)
Q Consensus 512 ~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 585 (608)
.|++++|+..++++++.+. .-+...+..++.+|.+.|++++|.+.++++ +.+...+..+..++...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777777776531 113456666777777777777777777776 3456677777777777777777777
Q ss_pred HHHHHHHc
Q 007329 586 FFRKMIDS 593 (608)
Q Consensus 586 ~~~~m~~~ 593 (608)
.+++.++.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777665
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00014 Score=72.52 Aligned_cols=119 Identities=9% Similarity=-0.044 Sum_probs=79.4
Q ss_pred HHhCCCchHHHHHHHHhH----hCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHHh-----CCC-CC-ccHHHH
Q 007329 475 LRLNNRSFEALIFFRKMM----LNLKPN----SVTLVSILSACARIGALMCGKEIHAHALRI-----GVA-FD-GFLPNA 539 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~----~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-p~-~~~~~~ 539 (608)
+...|++++|+.++++.+ .-+.|+ ..+++.|..+|...|++++|..+++++++. |.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445566666666666655 112222 346777777888888888888877776532 322 11 345677
Q ss_pred HHHHhHhcCCHHHHHHHHHhc--------CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN--------ERD----VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~--------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
|...|...|++++|..+++++ .|| ..+.+.+..++...|++++|..+++++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888765 333 234556777777888899999999988764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00055 Score=55.25 Aligned_cols=110 Identities=13% Similarity=-0.042 Sum_probs=92.3
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cCCHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CGRMKPAW 554 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 554 (608)
+++++|++.|++..+.-.|+.. +...|...+.+++|.+.+++..+.| ++..+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3578899999988844345544 7777777788899999999998875 66778888888988 89999999
Q ss_pred HHHHhc--CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 007329 555 NQFNSN--ERDVSAWNILLTGYAE----RGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 555 ~~~~~~--~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 595 (608)
+.|++. ..++..+..|...|.. .+++++|.++|++..+.|.
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999998 7788999999999998 8999999999999988753
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00014 Score=59.35 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=38.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc----------CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN----------ER-DVSAW----NILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----------~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.|..+..++.+.|++++|+..++++ .| +...| .....++...|++++|+..|++.++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5555555566666666655555443 33 34566 77788888888888888888888764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.77 E-value=9.1e-05 Score=71.48 Aligned_cols=140 Identities=10% Similarity=-0.088 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLN 478 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (608)
...+..+...+.+.|++++|...++..++.- +.. ......+++ ......+...|..+..+|.+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~----~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADG----AKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHH----GGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 4567777888888899999998888777521 000 000011111 111112346778888889999
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWN 555 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 555 (608)
|++++|++.+++.+...+.+...+..+..++...|++++|.+.++++.+..+. +...+..+..++.+.++.+++.+
T Consensus 287 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998444557788889999999999999999999999987655 66777778888888888877754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00015 Score=72.41 Aligned_cols=121 Identities=13% Similarity=-0.072 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCc--------------hhHHHHHHHHhHhcCCHHHHHHHHccCCC--
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRTGLISY--------------IIIANTLIDMYSKCKCIDKALEVFHQIPD-- 462 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 462 (608)
...+..+...+.+.|+++.|...|+.+++...... ...|..+..+|.+.|++++|+..+++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555566666666677777766666665432211 35566666666666777776666666542
Q ss_pred -CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHH
Q 007329 463 -KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGK 519 (608)
Q Consensus 463 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 519 (608)
.+...|..+..+|...|++++|+..|++.+.-.+.+...+..+..++.+.++.+++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666677777777776666322334445555666666666655544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00015 Score=59.08 Aligned_cols=91 Identities=16% Similarity=0.013 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCC--------CH-----HHHHHHHHHHhccCcHHHHHHHHHHHHHh------
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKP--------NS-----VTLVSILSACARIGALMCGKEIHAHALRI------ 528 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p--------~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 528 (608)
+......+.+.|++++|++.|++.++ +.| +. ..|..+..++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455667777888888888888771 112 23 38888889999999999999999999886
Q ss_pred -CCCCCccHH----HHHHHHhHhcCCHHHHHHHHHhc
Q 007329 529 -GVAFDGFLP----NALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 529 -~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+. +...| .....++...|++++|++.|+++
T Consensus 93 ~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 543 45677 78899999999999999999887
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00024 Score=55.28 Aligned_cols=78 Identities=12% Similarity=-0.058 Sum_probs=59.6
Q ss_pred hHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 482 FEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 482 ~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
++|++.|++.....+.+...+..+...+...|++++|...++++.+..+. +...+..+..+|...|++++|...|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677777777444556777888888888888888888888888877654 4567777888888888888888888776
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=60.59 Aligned_cols=126 Identities=14% Similarity=0.035 Sum_probs=70.0
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhcCCC-CC----hhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCc-----chhH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQELNIC-VD----EDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL-----SVRL 132 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~g~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~ 132 (608)
+..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...++...+..... ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 455666777888888888888877553211 11 1245555566667777777777777665543211 1234
Q ss_pred HhHHHHHhhhcCChhhHHHHHcccCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 133 GNAFLSMFVKFGDLGHAWYVFGKMCD-----RD----LFSWNVLIGGYAKAGFFDEALSLYQRMF 188 (608)
Q Consensus 133 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 188 (608)
+..+...+...|++++|...+++..+ .+ ..++..+...+...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44555555566666666666555421 11 1234444555555555555555555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.4e-05 Score=59.59 Aligned_cols=85 Identities=6% Similarity=-0.105 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCC-------HHHHHH
Q 007329 500 VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERD-------VSAWNI 569 (608)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~-------~~~~~~ 569 (608)
..+..+...+...|++++|.+.++++.+..+. +...+..+..+|.+.|++++|.+.++++ .|+ ...+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34445555555556666666666655555433 4445555556666666666666666555 332 334444
Q ss_pred HHHHHHhcCCHHHHHH
Q 007329 570 LLTGYAERGQGALAEE 585 (608)
Q Consensus 570 l~~~~~~~g~~~~A~~ 585 (608)
+..++...|+.+.|.+
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 4445555554444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00029 Score=54.79 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007329 516 MCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
+.|.+.++++.+..+. +...+..+...|...|++++|...++++ +.+...|..+...|...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567788888876654 6778889999999999999999999998 4568899999999999999999999999998
Q ss_pred Hc
Q 007329 592 DS 593 (608)
Q Consensus 592 ~~ 593 (608)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.5e-05 Score=70.50 Aligned_cols=146 Identities=11% Similarity=-0.024 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 007329 399 EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLN 478 (608)
Q Consensus 399 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (608)
...+..+...+.+.|+++.|...|+...+.. |+.. .+...|+.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence 4567777788889999999999999887654 2222 1223344444444332 23788889999999
Q ss_pred CCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh-HhcCCHHHHHHHH
Q 007329 479 NRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMY-VRCGRMKPAWNQF 557 (608)
Q Consensus 479 ~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~ 557 (608)
|++++|+..+++.+...+.+...|..+..++...|++++|...|+++.+..+. +...+..|.... ...+..+++.+.|
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998545567889999999999999999999999998876544 455555565553 3456777888888
Q ss_pred Hhc
Q 007329 558 NSN 560 (608)
Q Consensus 558 ~~~ 560 (608)
+++
T Consensus 323 ~~~ 325 (338)
T 2if4_A 323 KGI 325 (338)
T ss_dssp ---
T ss_pred HHh
Confidence 887
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=3.8e-05 Score=59.34 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC-C----ccHHHHH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAF-D----GFLPNAL 540 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~----~~~~~~l 540 (608)
..|..+...+...|++++|++.|++.+...+.+...+..+..++...|++++|.+.++++.+..+.. + ...+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 4566677788888888888888888885455577788888888888899999999888888765442 1 3445556
Q ss_pred HHHhHhcCCHHHHHHHHHhc
Q 007329 541 LDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~ 560 (608)
..++...|++++|.+.++++
T Consensus 85 ~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 85 ELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHhHhhhHhHHHHh
Confidence 66677777776666555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0019 Score=66.06 Aligned_cols=149 Identities=11% Similarity=-0.066 Sum_probs=116.7
Q ss_pred CHHHHHHHHccCCC--C-CcccHHHHHHHHHhCCC----------chHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC--
Q 007329 449 CIDKALEVFHQIPD--K-NVISWTSIILGLRLNNR----------SFEALIFFRKMMLNLKPNSVTLVSILSACARIG-- 513 (608)
Q Consensus 449 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~-- 513 (608)
.-++|++.++++.. | +...|+.--..+...|+ +++++++++++....+-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34456666666653 2 33456655555555555 789999999999666778889998888888889
Q ss_pred cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC-CHHHHHHHHHhc----CCCHHHHHHHHHHHHhc-----------
Q 007329 514 ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG-RMKPAWNQFNSN----ERDVSAWNILLTGYAER----------- 577 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~----------- 577 (608)
+++++++.++++.+..+. +...|+.-..++.+.| .++++.+.++++ ..|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 679999999999998877 7888888888888889 899999999988 55788999888777663
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCch
Q 007329 578 ---GQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 578 ---g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.++++.+.+++.+.. .|++.
T Consensus 203 ~~~~~~~eel~~~~~ai~~--~P~~~ 226 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFT--DPNDQ 226 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CSSCS
T ss_pred ccHHHHHHHHHHHHHHHhh--CCCCc
Confidence 5679999999999875 67654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0011 Score=67.74 Aligned_cols=132 Identities=9% Similarity=-0.062 Sum_probs=77.5
Q ss_pred HHHHHHHHccCCC---CCcccHHHHHHHHHhCC--CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC-cHHHHHHHHH
Q 007329 450 IDKALEVFHQIPD---KNVISWTSIILGLRLNN--RSFEALIFFRKMMLNLKPNSVTLVSILSACARIG-ALMCGKEIHA 523 (608)
Q Consensus 450 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~ 523 (608)
++++++.++.+.+ ++...|+.-...+.+.+ +++++++.++++.+..+-|...|+.-..++.+.| .++++.+.++
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4555555554442 23345555555555555 4466666666666444445666666555555556 5666666666
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhc--------------CCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHH
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRC--------------GRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGAL 582 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 582 (608)
++++..+. +...|+....++.+. +.+++|.+.++++ +.|...|.-+...+...|+.++
T Consensus 169 ~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 169 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp TTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 66665554 555555555554442 4567777777766 4467777777777766666433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00018 Score=58.56 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=24.6
Q ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCch
Q 007329 551 KPAWNQFNSN----ERDVSAWNILLTGYAERG-----------QGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 551 ~~A~~~~~~~----~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++|+..|+++ +.+..+|..+..+|...| ++++|++.|++.++. .|+..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~ 125 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCH
Confidence 3555555554 223445555555555442 556666666666553 55443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00076 Score=50.79 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 497 PNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 497 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
-+...+..+..++...|++++|...++++++..+. +...|..+..+|.+.|++++|.+.+++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566777777777777777777777777776655 5566777777788888888887777665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00026 Score=57.60 Aligned_cols=111 Identities=10% Similarity=-0.075 Sum_probs=81.5
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcH----------HHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGAL----------MCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
.+.+++++|++.+++..+.-+.+...|..+..++...+++ ++|+..|+++++.++. +...|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3455678888888888855566778888888888777654 5999999999988776 6778888999998
Q ss_pred hcC-----------CHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 546 RCG-----------RMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 546 ~~g-----------~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
..| ++++|.+.|+++ .|+...|...+... ++|.++.-.....
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 774 899999999988 77766665444433 3355555555444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00095 Score=48.91 Aligned_cols=74 Identities=15% Similarity=0.069 Sum_probs=36.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHH
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYA 575 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~ 575 (608)
.+..+...+...|++++|...++++.+..+. +...+..+..+|.+.|++++|.+.++++ +.+...+..+...+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3444444555555555555555555544332 3344445555555555555555555554 223444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00055 Score=68.21 Aligned_cols=131 Identities=4% Similarity=-0.151 Sum_probs=70.7
Q ss_pred HHcCCCchHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHh-----CC--CCchhHHHH
Q 007329 374 YEGSVLPDKAVETYQMMEAE---GSMPD----EITIASVLSACACLGNLDLGIKLHQLAMRT-----GL--ISYIIIANT 439 (608)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~---g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ 439 (608)
+...|++++|+.++++..+. -+.|+ ..+++.|...|...|++++|+.++++..+. |. +....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566777777766665432 11222 345666666777777777777766654431 11 111233444
Q ss_pred HHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH-hCCCCCHHHHHHHHHHHhccCcHHHH
Q 007329 440 LIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-LNLKPNSVTLVSILSACARIGALMCG 518 (608)
Q Consensus 440 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-~~~~p~~~~~~~ll~~~~~~~~~~~a 518 (608)
|...|...|++++|..++++ |+++++... ...+....+...+..++...+.+++|
T Consensus 399 La~~~~~~G~~~eA~~~~~~------------------------Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICK------------------------AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555554432 333333333 11111233455666677778888888
Q ss_pred HHHHHHHHHh
Q 007329 519 KEIHAHALRI 528 (608)
Q Consensus 519 ~~~~~~~~~~ 528 (608)
+.++.++++.
T Consensus 455 e~~~~~~~~~ 464 (490)
T 3n71_A 455 EFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.40 E-value=2.5e-05 Score=74.35 Aligned_cols=236 Identities=11% Similarity=0.089 Sum_probs=127.6
Q ss_pred hHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCC
Q 007329 131 RLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGV 210 (608)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~ 210 (608)
.+|..|..+..+.|++.+|++-|=+. .|+..|..+|....+.|.+++-++.+...++. .-+...=+.++-+|++.
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKT 129 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTS
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhh
Confidence 34445555555555555444433222 33444555555555555555555555444332 12222333455555555
Q ss_pred CChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC------------------------CCHhHH
Q 007329 211 PDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK------------------------RDRISW 266 (608)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~ 266 (608)
+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 55444333332 34443444444555555555555555544431 267789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhc
Q 007329 267 NAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSF 346 (608)
Q Consensus 267 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 346 (608)
-.+-.+|...+.+.-|.-.--.+.-. | .-...++..|-..|.+++.+.+++...... .....+|+-|.-.|++-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 88888998888887765544444321 1 122334556777788888777777655221 34556777777777765
Q ss_pred CChHHHHHHHhhCCC----C-------ChhhHHHHHHHHHcCCCchHHHH
Q 007329 347 GNREEGEKVFSRMES----K-------DVVSWTTMISCYEGSVLPDKAVE 385 (608)
Q Consensus 347 ~~~~~a~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~a~~ 385 (608)
++++..+-++..-. | ....|..++-.|++-.+++.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 45555555554432 2 33457777777777777776653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0012 Score=48.36 Aligned_cols=82 Identities=15% Similarity=0.089 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..|..+...+...|++++|+..|++.....+.+...+..+..++...|++++|...++++.+..+. +...+..+..++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 456667777788888888888888887444556777888888888888888888888888877554 4556666666665
Q ss_pred hcC
Q 007329 546 RCG 548 (608)
Q Consensus 546 ~~g 548 (608)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0012 Score=63.10 Aligned_cols=315 Identities=9% Similarity=0.048 Sum_probs=168.4
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHH
Q 007329 159 RDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNAL 238 (608)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 238 (608)
.++.+|-.+-.+|...+.+.-|.-.--.+. +.|| ....++..|-..|.+++...+++.-.... .....+|+-|
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniI----vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH----CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhc----ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 366788888888888888877765555444 2333 33456677888888888888888766321 3466788888
Q ss_pred HHHHHhcCCHHHHHHHHccCCCC-----------CHhHHHHHHHHHHhcCChhHHHHHHHHHHH----C-------CCCC
Q 007329 239 ITMYVKCGDLVRARLVFDGMPKR-----------DRISWNAMISGYFENGEYMKGLMLFIMMRE----V-------LVDP 296 (608)
Q Consensus 239 i~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-------~~~p 296 (608)
.-.|++- +.++..+.++..-.+ ....|..++-.|++-.+++.|....-+-.. . .-..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVa 348 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 348 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCS
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcc
Confidence 8888775 455555555443322 455788899999988888877543211000 0 0123
Q ss_pred ChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHH-HHHHHH
Q 007329 297 DFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTT-MISCYE 375 (608)
Q Consensus 297 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-li~~~~ 375 (608)
|...|-..|..|.... +....+++..+ .|.. -.+..++.+.+.|++.-...++..+...|....|. +-..|.
T Consensus 349 N~EiyYKAi~FYL~e~-P~lL~DLL~vL-----~prl-Dh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~I 421 (624)
T 3lvg_A 349 NVELYYRAIQFYLEFK-PLLLNDLLMVL-----SPRL-DHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFI 421 (624)
T ss_dssp CSHHHHHHHHHHTTSC-CTTSHHHHHHH-----CTTC-CSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-hHHHHHHHHhc-----cccC-ChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4444444444443321 11111111111 0100 01123334444444444444444444444433332 333444
Q ss_pred cCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHH
Q 007329 376 GSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALE 455 (608)
Q Consensus 376 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 455 (608)
...|++ ++..-+..|-+-..+..|.++- + ..-...-..-...|.+.++++++.+
T Consensus 422 EEEDy~-------------------~LR~SId~ydNFD~i~LA~rLE----k---HeL~eFRrIAA~LYkkn~rw~qsi~ 475 (624)
T 3lvg_A 422 TEEDYQ-------------------ALRTSIDAYDNFDNISLAQRLE----K---HELIEFRRIAAYLFKGNNRWKQSVE 475 (624)
T ss_dssp HTTCCH-------------------HHHHTTSSCCCSCTTHHHHHHH----T---CSSHHHHHHHHHHHHTTCHHHHHSS
T ss_pred hhhhHH-------------------HHHHHHHHhccccHHHHHHHHh----h---CchHHHHHHHHHHHHhcccHHHHHH
Confidence 444433 3333333333444444444332 1 1223333445566888888988887
Q ss_pred HHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007329 456 VFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEI 521 (608)
Q Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 521 (608)
+.++=. .|--.|......|+.+-|.++++-.++. -+...|...+..|...=+++-++++
T Consensus 476 l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~--g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 476 LCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQE--EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHH--CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHc--CchHHHHHHHHHHhhccChHHHHHH
Confidence 665422 2222344445567777777777776621 1335577777777777777766554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0043 Score=49.93 Aligned_cols=110 Identities=8% Similarity=-0.048 Sum_probs=65.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHH
Q 007329 175 GFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVK----CGDLVR 250 (608)
Q Consensus 175 g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~ 250 (608)
+++++|+++|++..+.+ .|+.. +...+...+.+++|.++|+...+.| +...+..|...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777655 33322 5555666666777777777777664 44555566666665 566666
Q ss_pred HHHHHccCCCC-CHhHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 007329 251 ARLVFDGMPKR-DRISWNAMISGYFE----NGEYMKGLMLFIMMREVL 293 (608)
Q Consensus 251 A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~ 293 (608)
|.+.|++..+. ++..+..|...|.. .++.++|..+|++..+.|
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666554332 45555555555555 555555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0016 Score=49.02 Aligned_cols=61 Identities=18% Similarity=0.126 Sum_probs=54.9
Q ss_pred CccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 533 DGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
+...+..+..+|.+.|++++|.+.|+++ +.+...|..+..+|...|++++|.+.+++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667888999999999999999999998 446789999999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0049 Score=60.25 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=34.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc--------CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN--------ERD----VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+++.|..+|...|++++|..+++++ .|+ ..+++.|...|...|++++|..++++.++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4455555566666666665555544 221 33566777777777777777777776643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.021 Score=61.72 Aligned_cols=155 Identities=12% Similarity=0.163 Sum_probs=104.8
Q ss_pred HHHHhcCChhHHHH-HHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007329 169 GGYAKAGFFDEALS-LYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGD 247 (608)
Q Consensus 169 ~~~~~~g~~~~a~~-~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 247 (608)
......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.- ..-.......|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~ 667 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQ 667 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTC
T ss_pred hHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCC
Confidence 34456788888876 44221 11223366777777888888887765321 111344567899
Q ss_pred HHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHh
Q 007329 248 LVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKM 327 (608)
Q Consensus 248 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 327 (608)
+++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+.....
T Consensus 668 ~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 668 LTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999988774 668999999999999999999999998754 445555556677777766666655554
Q ss_pred CCCCCcccchHHHHHHHhcCChHHHHHHHhhC
Q 007329 328 GFSDDVSVCNPLIKMYLSFGNREEGEKVFSRM 359 (608)
Q Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 359 (608)
| -++....+|.+.|++++|.+++.++
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4 2345555667777777776665443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.062 Score=50.38 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=34.0
Q ss_pred CccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 533 DGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++.+|..+...+...|++++|...++++ .|+...|..+...+...|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444555544444556666666666555 555555555555555566666666666555553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.014 Score=57.22 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=26.4
Q ss_pred HHHHHhCCCchHHHHHHHHhH---hC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 472 ILGLRLNNRSFEALIFFRKMM---LN-LKPN----SVTLVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~---~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
+..+.+.|++++|+.++++.+ .. +.|+ ..+++.+..+|...|++++|+.++++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 334445566666666666555 11 2222 1234444455555555555555544443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.07 Score=57.53 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=106.4
Q ss_pred HHHHHhCCChHHHHH-HHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCC
Q 007329 67 LNELCLNGSLEQALK-YLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGD 145 (608)
Q Consensus 67 l~~~~~~~~~~~A~~-~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (608)
.......+++++|.+ ++..+. +......+++.+...|.++.|.++.+. + ..-.......|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-----~~~f~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-------Q-----DQKFELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-----HHHHHHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-------c-----chheehhhhcCC
Confidence 445567899999977 553221 123347777888888998888776421 1 112344567899
Q ss_pred hhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH
Q 007329 146 LGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR 225 (608)
Q Consensus 146 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 225 (608)
++.|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+....
T Consensus 668 ~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 668 LTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998877 4567899999999999999999999998753 34455555557777766666555555
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHccC
Q 007329 226 FGYEADVDVVNALITMYVKCGDLVRARLVFDGM 258 (608)
Q Consensus 226 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 258 (608)
.| -++....+|.+.|++++|.+++.++
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44 2234444566677777777665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0071 Score=45.03 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=28.3
Q ss_pred HHHHhCCCchHHHHHHHHhHhCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 007329 473 LGLRLNNRSFEALIFFRKMMLNLKPNSV-TLVSILSACARIGALMCGKEIHAHALRIG 529 (608)
Q Consensus 473 ~~~~~~~~~~~A~~~~~~m~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 529 (608)
..+.+.|++++|++.|++.....+.+.. .+..+..++...|++++|.+.++++.+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444455555555555555522333344 45555555555555555555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0081 Score=58.72 Aligned_cols=83 Identities=7% Similarity=0.021 Sum_probs=56.5
Q ss_pred CCCchHHHHHHHHhH----hCCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHHHH-----hCCC-CC-ccHHHHHHH
Q 007329 478 NNRSFEALIFFRKMM----LNLKPN----SVTLVSILSACARIGALMCGKEIHAHALR-----IGVA-FD-GFLPNALLD 542 (608)
Q Consensus 478 ~~~~~~A~~~~~~m~----~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~ 542 (608)
.|++++|+.++++.+ .-+.|+ ..+++.+..+|...|++++|+.+++++++ .|.. |+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 355666666666655 112332 34677888888888888888888887763 2322 22 345778888
Q ss_pred HhHhcCCHHHHHHHHHhc
Q 007329 543 MYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 543 ~~~~~g~~~~A~~~~~~~ 560 (608)
.|...|++++|..+++++
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 899999999998888775
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.023 Score=55.67 Aligned_cols=86 Identities=13% Similarity=0.033 Sum_probs=61.3
Q ss_pred HHHhHhcCCHHHHHHHHccCCC-------C-C---cccHHHHHHHHHhCCCchHHHHHHHHhH----hCCCCC----HHH
Q 007329 441 IDMYSKCKCIDKALEVFHQIPD-------K-N---VISWTSIILGLRLNNRSFEALIFFRKMM----LNLKPN----SVT 501 (608)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~----~~~~p~----~~~ 501 (608)
+.-+.+.|++++|+.++++..+ + + ..+++.+...|...|++++|+.++++.+ .-..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4556678899999988876542 1 2 2478888999999999999999999887 113333 335
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHH
Q 007329 502 LVSILSACARIGALMCGKEIHAHAL 526 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~ 526 (608)
++.|...|...|++++|+.+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777777776655
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.02 Score=45.98 Aligned_cols=77 Identities=12% Similarity=-0.125 Sum_probs=37.1
Q ss_pred HHHHHHHhHhCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhC-CCCCccHHHHHHHHhHhcCCHHHHHHHHHh
Q 007329 484 ALIFFRKMMLNLKPNSVTLVSILSACARIG---ALMCGKEIHAHALRIG-VAFDGFLPNALLDMYVRCGRMKPAWNQFNS 559 (608)
Q Consensus 484 A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 559 (608)
+.+-|.+....-.++..+.-.+.+++++.+ +.+++..+++...+.+ +.-....+-.|.-+|.+.|++++|.+.++.
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 333444433223355555555555555555 4445666666555543 100122333344455555555555555555
Q ss_pred c
Q 007329 560 N 560 (608)
Q Consensus 560 ~ 560 (608)
+
T Consensus 97 l 97 (152)
T 1pc2_A 97 L 97 (152)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.015 Score=43.25 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=56.2
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHhcCC
Q 007329 505 ILSACARIGALMCGKEIHAHALRIGVAFDGF-LPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYAERGQ 579 (608)
Q Consensus 505 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g~ 579 (608)
....+...|++++|.+.++++.+..+. +.. .+..+..+|...|++++|.+.|+++ .| +...+.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 455677888999999999988887654 556 7778888888999999999988887 44 3334321 45
Q ss_pred HHHHHHHHHHHHH
Q 007329 580 GALAEEFFRKMID 592 (608)
Q Consensus 580 ~~~A~~~~~~m~~ 592 (608)
+.++...+++...
T Consensus 77 ~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 77 VMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHhc
Confidence 5566666655543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.019 Score=42.12 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 564 VSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 564 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+..+..+...+...|++++|++.|+++.+
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333444444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.033 Score=40.83 Aligned_cols=64 Identities=8% Similarity=-0.068 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 496 KPNSVTLVSILSACARIGA---LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+.|...+..+..++...++ .++|..+++++++..+. ++.....+...+.+.|++++|.+.|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677788888888865544 79999999999998777 7788888999999999999999999998
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.088 Score=49.38 Aligned_cols=73 Identities=10% Similarity=-0.010 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CCCHHHHH
Q 007329 494 NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ERDVSAWN 568 (608)
Q Consensus 494 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~ 568 (608)
..+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++ .|...+|.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 345677777777777777788888888888888876 56666667778888888888888888777 67666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.90 E-value=2.3 Score=45.30 Aligned_cols=263 Identities=8% Similarity=-0.063 Sum_probs=136.4
Q ss_pred HHhhcCChhhHHHHHHHHHHhCCCCC--cccchHHHHHHHhcCChHHHHHHHhhCCC-CC---------hh-hHHHHHHH
Q 007329 307 ASELVGDEKLGREVHGYVIKMGFSDD--VSVCNPLIKMYLSFGNREEGEKVFSRMES-KD---------VV-SWTTMISC 373 (608)
Q Consensus 307 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---------~~-~~~~li~~ 373 (608)
+....|+.+++..+++.....+-..+ ...-..+.-+...+|..+++..++..... ++ .. .-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567788888777765433110111 12223344445566666667776655432 22 11 12222224
Q ss_pred HHcCCC-chHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH--hHhcC
Q 007329 374 YEGSVL-PDKAVETYQMMEAEGSMPDEITIA--SVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDM--YSKCK 448 (608)
Q Consensus 374 ~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g 448 (608)
++-.|. -+++.+.+..+....- +...... .+...+...|+.+....++..+.+.. +..+...+..+ +.-.|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 444443 2567777777765421 1111122 22333556778888888887766532 22333333333 33567
Q ss_pred CHHHHHHHHccCC-CCCcc-cHH---HHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007329 449 CIDKALEVFHQIP-DKNVI-SWT---SIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHA 523 (608)
Q Consensus 449 ~~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 523 (608)
+.+.+..+++.+. ..++. -|. ++.-+|+..|+.....+++..+......+......+.-++...|+.+.+.++++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 7777666666554 23332 232 234566777887666668888774433344444444445556677666777776
Q ss_pred HHHHhCCCCCccHHHHHHHHhHhcCCH-HHHHHHHHhc--CCCHHHHHHHHHHH
Q 007329 524 HALRIGVAFDGFLPNALLDMYVRCGRM-KPAWNQFNSN--ERDVSAWNILLTGY 574 (608)
Q Consensus 524 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~--~~~~~~~~~l~~~~ 574 (608)
.+.+.+ .|....-..+.-+....|.. .+|.+.+..+ .+|..+-...+-++
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 555433 33443333444444444443 6788888888 55555443333333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.18 Score=41.51 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=66.7
Q ss_pred HHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHH
Q 007329 242 YVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVH 321 (608)
Q Consensus 242 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 321 (608)
....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+..+ +..+.-.|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 35667777777776665 3566777888877888888877777776543 344444555566666666555
Q ss_pred HHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC
Q 007329 322 GYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES 361 (608)
Q Consensus 322 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 361 (608)
+.....| -++.....+...|+++++.++|.+...
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 5554444 245555666677777777777665544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.29 Score=37.75 Aligned_cols=140 Identities=11% Similarity=-0.016 Sum_probs=91.9
Q ss_pred HcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHH
Q 007329 375 EGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKAL 454 (608)
Q Consensus 375 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 454 (608)
.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+ -.| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHH
Confidence 3466777777777776654 2555666666555555555555555544322 111 12355555555
Q ss_pred HHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 455 EVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
..+-.+-. +..-....+..+..+|+-++-.+++..+....+|++.....+..||.+.|+..++.+++.++-+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55544432 22334556778888898888888888876567888888888999999999999999999998888865
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.38 Score=43.24 Aligned_cols=114 Identities=11% Similarity=0.032 Sum_probs=68.2
Q ss_pred hcCCHHHHHHHHccCCCCCc--ccHHHHHHH-HHhC--CC------chHHHHHHHHhHhCCCCC---HHHHHHHHHHHhc
Q 007329 446 KCKCIDKALEVFHQIPDKNV--ISWTSIILG-LRLN--NR------SFEALIFFRKMMLNLKPN---SVTLVSILSACAR 511 (608)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~-~~~~--~~------~~~A~~~~~~m~~~~~p~---~~~~~~ll~~~~~ 511 (608)
+.++..+-.+.+.++...++ ..|..++.+ +... |+ ...|...+++.+ .+.|+ ...|..+...|..
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl-eLDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC-DLWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH-HhCCCcccCHHHHHHHHHHHh
Confidence 34555555666666654433 456655543 3332 32 234455555555 34454 4466666666666
Q ss_pred c-----CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc-CCHHHHHHHHHhc
Q 007329 512 I-----GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC-GRMKPAWNQFNSN 560 (608)
Q Consensus 512 ~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 560 (608)
. |+.++|.+.|+++++.++.-+..++..+.+.|++. |+.++|.+.++++
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3 77777777777777766643466666677777774 7777777777776
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.16 Score=40.77 Aligned_cols=85 Identities=9% Similarity=-0.018 Sum_probs=66.6
Q ss_pred CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC---CHHHHHHHHHhc---C-C--CHHHHHHHHHHHHhcCCHHHH
Q 007329 513 GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG---RMKPAWNQFNSN---E-R--DVSAWNILLTGYAERGQGALA 583 (608)
Q Consensus 513 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~---~-~--~~~~~~~l~~~~~~~g~~~~A 583 (608)
+....+.+-|.+..+.+. ++..+.-.+..++++.+ +++++..++++. . | +...+..|.-+|.+.|++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 445667777777776665 57777777888899888 677999999888 3 4 355677788888999999999
Q ss_pred HHHHHHHHHcCCCCCch
Q 007329 584 EEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 584 ~~~~~~m~~~g~~p~~~ 600 (608)
.++++++++. +|++.
T Consensus 91 ~~y~~~lL~i--eP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNN 105 (152)
T ss_dssp HHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHhc--CCCCH
Confidence 9999999985 88776
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.8 Score=37.73 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=69.1
Q ss_pred HHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhH
Q 007329 137 LSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRG 216 (608)
Q Consensus 137 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 216 (608)
.......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+..
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 34455778888888887766 4566788888888888888888888887642 33444445556666665
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 007329 217 KEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMP 259 (608)
Q Consensus 217 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 259 (608)
.++-+.....| -++.....+.-.|+++++.++|.+..
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 55555544444 23444555566777777777766543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.14 Score=38.32 Aligned_cols=63 Identities=10% Similarity=-0.118 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHHHHhC------CCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 498 NSVTLVSILSACARIGALMCGKEIHAHALRIG------VAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 498 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..-+..+...+...|+++.|...++.+.+.. -.+...++..|..+|.+.|++++|...++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44556677888888899999998888877542 1124566777888888888888888888877
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.42 Score=37.83 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=56.2
Q ss_pred CCCcccHHHHHHHHHhCCCc------hHHHHHHHHhHhCCCCCHH----HHHHHHH---HHhccCcHHHHHHHHHHHHHh
Q 007329 462 DKNVISWTSIILGLRLNNRS------FEALIFFRKMMLNLKPNSV----TLVSILS---ACARIGALMCGKEIHAHALRI 528 (608)
Q Consensus 462 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~p~~~----~~~~ll~---~~~~~~~~~~a~~~~~~~~~~ 528 (608)
..|..+|-..+..+-+.|++ ++..++|++....++|+.. .|..+.- .+...++.++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34666777777777777777 7777778777766666531 1111110 112236777777777777665
Q ss_pred CCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 529 GVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.-+. ..+|-.....=.+.|+++.|.+++.+.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2222 334444444445666666666666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.21 Score=37.33 Aligned_cols=64 Identities=8% Similarity=-0.010 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHh---C----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMML---N----LKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~---~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
...+...+.+.|+++.|...|+.... . -.+....+..+..++.+.|+++.|...++++.+..+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 34566667777777777777777661 1 1234556777777777777777777777777765443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.95 Score=34.99 Aligned_cols=140 Identities=11% Similarity=-0.037 Sum_probs=84.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHH
Q 007329 274 FENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGE 353 (608)
Q Consensus 274 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 353 (608)
.-.|..++..++..+.... .+..-|+-+|--....-+-+-..+.++. -|-..|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~---IGkiFDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDK---IGSYFDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHH---HGGGSCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHH---HhhhcCcH----------hhhcHHHHH
Confidence 3456677777777666553 2444555555444444443333333333 33222322 233444444
Q ss_pred HHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 007329 354 KVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLI 431 (608)
Q Consensus 354 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (608)
..+-.+.. +.......+..+..+|.-++-.+++..+.. +..|++.....+..+|.+.|+..++.+++.++-+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44433332 233445566777888888888888888644 34678888888899999999999999999888888854
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.1 Score=46.92 Aligned_cols=87 Identities=14% Similarity=0.119 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHHhCCCC-CccHHHHHHHHhHhc-----CCHHHHHHHHHhc---CC--CHHHHHHHHHHHHhc-CCHH
Q 007329 514 ALMCGKEIHAHALRIGVAF-DGFLPNALLDMYVRC-----GRMKPAWNQFNSN---ER--DVSAWNILLTGYAER-GQGA 581 (608)
Q Consensus 514 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~ 581 (608)
....|...++++++..+.- +...|..|+..|.+. |+.++|.+.|++. .| +..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4567778888888865542 366888999999995 9999999999998 66 388888999999885 9999
Q ss_pred HHHHHHHHHHHcCCC--CCch
Q 007329 582 LAEEFFRKMIDSKGN--WRKL 600 (608)
Q Consensus 582 ~A~~~~~~m~~~g~~--p~~~ 600 (608)
+|.+.+++.++.... |+..
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHcCCCCCCCChh
Confidence 999999999997655 5543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.33 Score=38.43 Aligned_cols=104 Identities=9% Similarity=-0.028 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHhccCcH------HHHHHHHHHHHHhCCCCC-ccHHHHHHHH------hHhcCCHHHHHHHHHhc--
Q 007329 496 KPNSVTLVSILSACARIGAL------MCGKEIHAHALRIGVAFD-GFLPNALLDM------YVRCGRMKPAWNQFNSN-- 560 (608)
Q Consensus 496 ~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~p~-~~~~~~l~~~------~~~~g~~~~A~~~~~~~-- 560 (608)
+-|..+|-..+.-.-+.|+. ++.+++|+++... +.|+ ...|...|.. +...++.++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34667777777777777888 8888899988864 3333 2222222221 23458999999999988
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 561 --ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 561 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+.-...|......-.++|+...|..++.+.+..+.+|..+
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 4447788888888889999999999999999988777766
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.12 E-value=7.3 Score=41.59 Aligned_cols=249 Identities=14% Similarity=-0.037 Sum_probs=129.7
Q ss_pred HHHhcCChHHHHHHHhhCCC----CChh--hHHHHHHHHHcCCCchHHHHHHHHHHHCCC--CCC---H--HHHHHHHHH
Q 007329 342 MYLSFGNREEGEKVFSRMES----KDVV--SWTTMISCYEGSVLPDKAVETYQMMEAEGS--MPD---E--ITIASVLSA 408 (608)
Q Consensus 342 ~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~---~--~t~~~ll~~ 408 (608)
+....|+.++++.+++.... .+.. .-..+.-+....|..+++..++.......- .-+ . ..-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34566778888888887664 2222 222233355666666678887777654321 011 1 111222222
Q ss_pred HHccCC-hHHHHHHHHHHHHhCCCCch--hHHHHHHHHhHhcCCHHHHHHHHccCCC-CCc--ccHHHHHHHHHhCCCch
Q 007329 409 CACLGN-LDLGIKLHQLAMRTGLISYI--IIANTLIDMYSKCKCIDKALEVFHQIPD-KNV--ISWTSIILGLRLNNRSF 482 (608)
Q Consensus 409 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~ 482 (608)
..-.|. -+++.+.+..+....- ... ..--+|...+.-.|+-+....++..+.+ .+. .-.-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 332332 2344555555443221 111 1112334445566777777777665432 122 22233444566788888
Q ss_pred HHHHHHHHhHhCCCCCHHHH--HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 483 EALIFFRKMMLNLKPNSVTL--VSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 483 ~A~~~~~~m~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+..+++.+.....|....- ..+.-+|+..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+..+++.+
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 88888888774333322222 234456777888877777888877532 223333333344455567766667777655
Q ss_pred --CCCHHHHHHHH--HHHHhcCCH-HHHHHHHHHHHH
Q 007329 561 --ERDVSAWNILL--TGYAERGQG-ALAEEFFRKMID 592 (608)
Q Consensus 561 --~~~~~~~~~l~--~~~~~~g~~-~~A~~~~~~m~~ 592 (608)
..|+.+-.... -+....|.. .+|.+++..+..
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 34544443333 333444443 667788888864
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.64 Score=35.75 Aligned_cols=81 Identities=9% Similarity=-0.078 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHH---HHHHHHhc-C---C--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007329 517 CGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKP---AWNQFNSN-E---R--DVSAWNILLTGYAERGQGALAEEFF 587 (608)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~---~--~~~~~~~l~~~~~~~g~~~~A~~~~ 587 (608)
.+.+-+......|. ++..+--.+..++.+..+..+ ++.+++.+ . | .......|.-++.+.|++++|.+++
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33333443333333 333333344455555544333 55555555 1 1 1223344555666666666666666
Q ss_pred HHHHHcCCCCCch
Q 007329 588 RKMIDSKGNWRKL 600 (608)
Q Consensus 588 ~~m~~~g~~p~~~ 600 (608)
+.+++. .|+..
T Consensus 98 ~~lL~~--eP~n~ 108 (126)
T 1nzn_A 98 RGLLQT--EPQNN 108 (126)
T ss_dssp HHHHHH--CTTCH
T ss_pred HHHHHh--CCCCH
Confidence 666664 55543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.61 E-value=3.1 Score=40.68 Aligned_cols=149 Identities=9% Similarity=-0.039 Sum_probs=72.4
Q ss_pred cCChhHHHHHHHHHHhcCC----CCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHh-CCCCchhHHHHHHHH----HHh
Q 007329 174 AGFFDEALSLYQRMFWVGG----VKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRF-GYEADVDVVNALITM----YVK 244 (608)
Q Consensus 174 ~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~----~~~ 244 (608)
.|+++.|++-+..+.+... ..-.......++..|...|+++...+.+..+.+. |..+.. ...+++. ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3778888887776665321 2223344666777788888888777766655543 322221 2223222 222
Q ss_pred cCCH--HHHHHHHccCCC---C-------CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCh-----hHHHHHHHH
Q 007329 245 CGDL--VRARLVFDGMPK---R-------DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF-----MTLSSVISA 307 (608)
Q Consensus 245 ~g~~--~~A~~~~~~~~~---~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~ 307 (608)
.... +.-..+.+.+.. . .......|...|-..|++.+|.+++..+...-...+. ..+...++.
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2222 222233333321 1 1112344566666677777777777666432111111 123333444
Q ss_pred HhhcCChhhHHHHHHHH
Q 007329 308 SELVGDEKLGREVHGYV 324 (608)
Q Consensus 308 ~~~~~~~~~a~~~~~~~ 324 (608)
|...+++..|..++..+
T Consensus 187 ~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 44555555555544443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.01 E-value=5 Score=36.72 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=88.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH-----hCCCCCHHHHHHHHHHHh
Q 007329 436 IANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM-----LNLKPNSVTLVSILSACA 510 (608)
Q Consensus 436 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-----~~~~p~~~~~~~ll~~~~ 510 (608)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++-.-++ .+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566667888888888887654 2345566777666665543333 467778777777776665
Q ss_pred ccCcHH-HHHHHHHHHH----HhCC--CCCccHHHHHHHHhHhcCCHHHHHHHHHhcC--------------------CC
Q 007329 511 RIGALM-CGKEIHAHAL----RIGV--AFDGFLPNALLDMYVRCGRMKPAWNQFNSNE--------------------RD 563 (608)
Q Consensus 511 ~~~~~~-~a~~~~~~~~----~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------~~ 563 (608)
....-+ .-.+++++++ +.|- .-|+.....+...|.+.|++.+|...|-... .+
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 532111 2234444444 3322 2266778889999999999999988763221 12
Q ss_pred HHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 007329 564 VSAWN----ILLTGYAERGQGALAEEFFRKMI 591 (608)
Q Consensus 564 ~~~~~----~l~~~~~~~g~~~~A~~~~~~m~ 591 (608)
+.... -.+--|.-.|+...|..+++...
T Consensus 184 ~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAEFFSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 22111 11223556788888888877664
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.71 E-value=7.7 Score=35.44 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=99.9
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHH----HHHHHhcCCCCCCcchHHHHHHHh
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSL----YQRMFWVGGVKPDVYTFPCVLRTC 207 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~~p~~~~~~~ll~~~ 207 (608)
.|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ ++...+.+ ++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~-~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAE-VKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 4556667777888888888876543 2334556666555553 44444444 788887777777776
Q ss_pred cCCCChh-hHHHHHHHHH----HhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhc---C
Q 007329 208 GGVPDLK-RGKEVHVHVI----RFGY--EADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFEN---G 277 (608)
Q Consensus 208 ~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~ 277 (608)
.....-+ .-.++++.++ +.|- .-++.....+...|.+.|++.+|...|-.-...|...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533211 2233444444 3332 236778888999999999999999877633323566666666555544 4
Q ss_pred ChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 278 EYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 278 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
...++--++- ..+--+...++...|..+++...+
T Consensus 183 ~~~e~dlf~~---------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFS---------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHH---------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHH---------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4333221111 112234456788888888776543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.40 E-value=0.57 Score=36.06 Aligned_cols=83 Identities=12% Similarity=-0.130 Sum_probs=56.2
Q ss_pred chHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH---HHHHHHHHHHhC-CCCCccHHHHHHHHhHhcCCHHHHHHH
Q 007329 481 SFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC---GKEIHAHALRIG-VAFDGFLPNALLDMYVRCGRMKPAWNQ 556 (608)
Q Consensus 481 ~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~ 556 (608)
...+.+-|.+....-.++..+--.+.+++.+..+... +..+++.+.+.+ +.-.....-.|.-++.+.|++++|.+.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344455555542234788888888888888876655 778888777654 111233344577788999999999999
Q ss_pred HHhc---CCC
Q 007329 557 FNSN---ERD 563 (608)
Q Consensus 557 ~~~~---~~~ 563 (608)
++.+ +|+
T Consensus 97 ~~~lL~~eP~ 106 (126)
T 1nzn_A 97 VRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 9888 554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.77 E-value=10 Score=34.99 Aligned_cols=168 Identities=13% Similarity=0.068 Sum_probs=97.3
Q ss_pred HHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHH----HHHHhcCCCCCCcchHHHHHHHh
Q 007329 132 LGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLY----QRMFWVGGVKPDVYTFPCVLRTC 207 (608)
Q Consensus 132 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~~p~~~~~~~ll~~~ 207 (608)
+|.++..-|.+.+++++|++++-.- ...+.+.|+...|.++- +...+.+ +++|......++..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~-~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAG-QRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 3455666677888888888876542 22345556655544433 4444444 788887777777776
Q ss_pred cCCCChh-hHHHHHHHH----HHhC--CCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChh
Q 007329 208 GGVPDLK-RGKEVHVHV----IRFG--YEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYM 280 (608)
Q Consensus 208 ~~~~~~~-~a~~~~~~~----~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 280 (608)
.....-+ .=..+.+.+ .+.| ..-|......+...|.+.+++.+|...|-.-.++++..|..++.-+...+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 6555322 112333333 3344 23466777888899999999999998885322223356655555554444322
Q ss_pred HHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 281 KGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 281 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
++- .+.-. .+--|...++...|..+++...+
T Consensus 185 e~d--------------lfiaR-aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAP--------------LYCAR-AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHH--------------HHHHH-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHH--------------HHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 221 11112 22234556788888777766553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.40 E-value=4.9 Score=41.95 Aligned_cols=49 Identities=10% Similarity=-0.040 Sum_probs=23.7
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 511 RIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
..|+++.|+++-+++....+. +-.+|..|..+|...|+++.|+-.+..+
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344455555555544444333 3444555555555555555555554444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.94 E-value=5 Score=41.84 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=44.1
Q ss_pred HHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 541 LDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 541 ~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
.+.+...|+++-|+++-+++ +-+..+|..|..+|...|+++.|+-.++-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44566789999999999988 557899999999999999999999888876
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=89.77 E-value=2.3 Score=30.65 Aligned_cols=86 Identities=20% Similarity=0.140 Sum_probs=60.8
Q ss_pred CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007329 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (608)
..++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+..+.||...|-+|-. .+.|-.+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777666554 22222333455678899999999999999999999988765 467888888888878876
Q ss_pred cCCCCCCcchHH
Q 007329 190 VGGVKPDVYTFP 201 (608)
Q Consensus 190 ~~~~~p~~~~~~ 201 (608)
+| .|....|.
T Consensus 98 sg--~p~~q~Fa 107 (116)
T 2p58_C 98 SQ--DPRIQTFV 107 (116)
T ss_dssp CC--CHHHHHHH
T ss_pred CC--CHHHHHHH
Confidence 66 55544443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.40 E-value=2.2 Score=30.72 Aligned_cols=86 Identities=13% Similarity=-0.002 Sum_probs=61.5
Q ss_pred CchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007329 110 GYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 110 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (608)
..++|.-+-+.+...+. ...+--.-+..+...|++++|..+.+..+.||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777776666554 22222333455678899999999999999999999987755 578888888888888887
Q ss_pred cCCCCCCcchHH
Q 007329 190 VGGVKPDVYTFP 201 (608)
Q Consensus 190 ~~~~~p~~~~~~ 201 (608)
+| .|....|.
T Consensus 97 sg--~p~~q~Fa 106 (115)
T 2uwj_G 97 SS--DPALADFA 106 (115)
T ss_dssp CS--SHHHHHHH
T ss_pred CC--CHHHHHHH
Confidence 76 55544443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.64 E-value=5.7 Score=32.12 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=15.0
Q ss_pred HHHHhHhcCCHHHHHHHHHhc
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+..+|.+.|++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 556677777777777777776
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.58 E-value=3.3 Score=46.24 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=26.8
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC
Q 007329 405 VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP 461 (608)
Q Consensus 405 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 461 (608)
++..+...+..+.+.++... ++.+....-.+..+|...|++++|.+.|++..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44445555555555443321 12233333344555666777777777776653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.35 E-value=2.9 Score=36.95 Aligned_cols=115 Identities=8% Similarity=-0.047 Sum_probs=79.3
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHhHhcCC
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD--GFLPNALLDMYVRCGR 549 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 549 (608)
+..+.+.|+.++|++....-++..+-|...-..++.-+|-.|++++|.+-++...+..+... ...|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 34567889999999999998878888998899999999999999999999998888755422 2234444432
Q ss_pred HHHHHH-HHHhc-CC-----CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 007329 550 MKPAWN-QFNSN-ER-----DVSAWNILLTGYA--ERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 550 ~~~A~~-~~~~~-~~-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~ 593 (608)
+..++ +|..- .| ...-...++.+.. ..|+.++|.++-+++.+.
T Consensus 78 -E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111 22211 22 2233345566654 569999999999888765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=2.3 Score=40.79 Aligned_cols=70 Identities=7% Similarity=-0.063 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHH-----HhCCCCCccHHH
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHAL-----RIGVAFDGFLPN 538 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~~ 538 (608)
..++..+...|++++|+..+..+....+-+...+..++.++.+.|+..+|++.|+... +.|+.|.+.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3455667778888888888877775556677788888888888888888888887765 458888766543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.58 E-value=7.3 Score=43.52 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=35.7
Q ss_pred hHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHH
Q 007329 337 NPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMM 390 (608)
Q Consensus 337 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 390 (608)
..++..+...+..+-+.++..-... +...--.+..+|...|++++|.+.|++.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3466667777887777776655544 3333344566788888888888888764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.37 E-value=3.2 Score=30.15 Aligned_cols=63 Identities=8% Similarity=0.144 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHH
Q 007329 75 SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLS 138 (608)
Q Consensus 75 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 138 (608)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...-.. ...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 55677778888888888899999999999999999999999998887654322 2445665554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.95 E-value=3 Score=32.24 Aligned_cols=67 Identities=7% Similarity=-0.133 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 494 NLKPNSVTLVSILSACARIG---ALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 494 ~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+-.|+..|--.+.+++++.. +..++..+++.+.+.+..-....+-.|.-++.+.|++++|.+..+.+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455555555555665554 33456666666665543222333334555566666666666666655
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.80 E-value=2.3 Score=40.72 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=49.9
Q ss_pred HHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCch
Q 007329 538 NALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID-----SKGNWRKL 600 (608)
Q Consensus 538 ~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 600 (608)
..+++.+...|++++|...+... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|..-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 45677788889998888887776 44677888999999999999999888887643 48888766
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.08 E-value=6.8 Score=30.74 Aligned_cols=66 Identities=8% Similarity=-0.137 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHhccCc---HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 495 LKPNSVTLVSILSACARIGA---LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 495 ~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
-.|+..+--.+.+++.+..+ ..++..+++.+.+.++.-.....-.|.-++.|.|++++|.+..+.+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 35666666666777766653 4467777777776554323333344666777777777777777766
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.83 E-value=11 Score=35.89 Aligned_cols=26 Identities=12% Similarity=-0.101 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHH
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLA 425 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~ 425 (608)
.....|...|.+.|+.++..+++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555666666666655555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.59 E-value=22 Score=32.73 Aligned_cols=167 Identities=13% Similarity=0.060 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHH----HHHHHCCCCCChhHHHHHHHHHh
Q 007329 234 VVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLF----IMMREVLVDPDFMTLSSVISASE 309 (608)
Q Consensus 234 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~ 309 (608)
+|.++..-|.+.+++++|.+++.. -...+.+.|+...+.++- +-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 456677778899999999887543 234566677777666655 44556788888888888887776
Q ss_pred hcCChh-hHHHHHHHHHHh----C--CCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchH
Q 007329 310 LVGDEK-LGREVHGYVIKM----G--FSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDK 382 (608)
Q Consensus 310 ~~~~~~-~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 382 (608)
.....+ .-..+++.+++. | -.-|+.....+...|.+.+++.+|+.-|-.-.++....+..++.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655322 223344444432 3 223566777888899999999999888743222223455444433333222111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 007329 383 AVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 383 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 426 (608)
+|...-..+ --|...+++..|..+++...
T Consensus 186 --------------~dlfiaRaV-L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 --------------APLYCARAV-LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp --------------HHHHHHHHH-HHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHHhCCHHHHHHHHHHHH
Confidence 122222222 33555678888887766544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.49 E-value=8.5 Score=29.73 Aligned_cols=70 Identities=7% Similarity=0.014 Sum_probs=54.0
Q ss_pred CCCCCccHHHHHHHHhHhcCC---HHHHHHHHHhc---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 529 GVAFDGFLPNALLDMYVRCGR---MKPAWNQFNSN---ER--DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+..|++.+--.+..++.+..+ ..+++.+++++ .| ....+--|.-++.+.|++++|.++.+.+++. .|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 455566665567778887765 45678888877 44 3556778888999999999999999999985 88876
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.36 E-value=6.7 Score=28.50 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
++.+-++.+....+.|++......+++|-+.+++..|.++++-+...- .....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 556667777777888999999999999999999999999998777432 233456666654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.55 E-value=12 Score=27.10 Aligned_cols=79 Identities=14% Similarity=-0.021 Sum_probs=57.2
Q ss_pred CChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 211 PDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMR 290 (608)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 290 (608)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|... +.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345677777776666653 333333334557788999999999999999999998877654 6788888888887777
Q ss_pred HCC
Q 007329 291 EVL 293 (608)
Q Consensus 291 ~~~ 293 (608)
..|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.40 E-value=16 Score=29.58 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=66.9
Q ss_pred HHHHHhhhcCChhhHHHHHcccC-----CCCc-------chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcc-hHH
Q 007329 135 AFLSMFVKFGDLGHAWYVFGKMC-----DRDL-------FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVY-TFP 201 (608)
Q Consensus 135 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~ 201 (608)
.-+..+...|.++.|+.+.+.+. .++. .++..+.+++...|++.+|...|++..+....-+... ++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33566777888888888777652 2332 1456677788888888888888888654321212111 111
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCC--CHhHHHHH
Q 007329 202 CVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKR--DRISWNAM 269 (608)
Q Consensus 202 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l 269 (608)
.+ .. ...... ......+...--.+..+|.+.|++++|+.+++.++.+ ++..--.|
T Consensus 105 ~~-~~---~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~L 161 (167)
T 3ffl_A 105 ST-GN---SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLL 161 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHH
T ss_pred cc-cc---cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHH
Confidence 11 00 000000 0012234445455777888888899998888888653 44443333
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.26 E-value=12 Score=27.07 Aligned_cols=79 Identities=11% Similarity=-0.042 Sum_probs=55.6
Q ss_pred CChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007329 211 PDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMR 290 (608)
Q Consensus 211 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 290 (608)
...++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|-+|... +.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345667777776666653 333333334557788999999999999998999988777654 6677777777776776
Q ss_pred HCC
Q 007329 291 EVL 293 (608)
Q Consensus 291 ~~~ 293 (608)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=80.34 E-value=54 Score=33.40 Aligned_cols=112 Identities=13% Similarity=-0.073 Sum_probs=70.1
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIAS----VLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKA 453 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 453 (608)
.+.+.|...+....... ..+...... +.......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998887543 223333222 2223334453556666666544332 3333344445555678999999
Q ss_pred HHHHccCCCCCc--cc-HHHHHHHHHhCCCchHHHHHHHHhH
Q 007329 454 LEVFHQIPDKNV--IS-WTSIILGLRLNNRSFEALIFFRKMM 492 (608)
Q Consensus 454 ~~~~~~~~~~~~--~~-~~~l~~~~~~~~~~~~A~~~~~~m~ 492 (608)
...|+.|..... .- ..=+..++.+.|+.++|..+|+.+.
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999986322 11 2234557778999999999999886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 608 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 6e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 5e-04
Identities = 36/363 (9%), Positives = 101/363 (27%), Gaps = 16/363 (4%)
Query: 242 YVKCGDLVRARLVFDGMPKRD---RISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDF 298
+ GD A + +++ + S +F+ + + +P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFS--TLAIKQNPLL 66
Query: 299 MTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSR 358
S + + H D + L ++ G+ E + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 359 MESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSA--CACLGNLD 416
+ + + E +A G +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 417 LGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVF---HQIPDKNVISWTSIIL 473
L I + A+ +++ L ++ + + D+A+ + + + + ++
Sbjct: 187 LAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 474 GLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD 533
A+ +R+ + L+P+ L+ + + E +
Sbjct: 246 VYYEQGLIDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304
Query: 534 GFLPNALLDMYVRCGRMKPAWNQFNS----NERDVSAWNILLTGYAERGQGALAEEFFRK 589
N L ++ G ++ A + +A + L + ++G+ A +++
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 590 MID 592
I
Sbjct: 365 AIR 367
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.003
Identities = 40/347 (11%), Positives = 107/347 (30%), Gaps = 15/347 (4%)
Query: 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEV 219
+ +L + + D + + + Y+ + G
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 220 HVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEY 279
H ++ + + A + V+A + + + + G
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 280 MKGLMLFIMMREVLVDPDFMTLSSVISASEL-VGDEKLGREVHGYVIKMGFSDDVSVCNP 338
+ ++ + P+F S + G+ L + + + +
Sbjct: 152 EE--AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNFLDAYIN 208
Query: 339 LIKMYLSFGNREEGEKVFSRMESKD---VVSWTTMISCYEGSVLPDKAVETYQMMEAEGS 395
L + + + R S V + Y L D A++TY+ A
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR--RAIEL 266
Query: 396 MPDEITIASVL-SACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKAL 454
P L +A G++ + A+R ++ N L ++ + I++A+
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAV 325
Query: 455 EVFHQ---IPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPN 498
++ + + + + +++ L+ + EAL+ +++ + + P
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE-AIRISPT 371
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 26/218 (11%), Positives = 63/218 (28%), Gaps = 11/218 (5%)
Query: 150 WYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVK-PDVYTFPCVLRTCG 208
WY + ++ F DEA ++Y+R K +Y
Sbjct: 53 WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112
Query: 209 GVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNA 268
+ ++ ++ V + + + R++F + R +
Sbjct: 113 MKYEKVH--SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 170
Query: 269 MISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASEL---VGDEKLGREVHGYVI 325
++ K + + E+ + V++ + + ++ R + V+
Sbjct: 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230
Query: 326 KMGFSDDVSVCNPLIKMYLSF----GNREEGEKVFSRM 359
S + +L+F G+ KV R
Sbjct: 231 TS-GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 608 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.05 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.0 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.97 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.87 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.77 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.39 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.31 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.07 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.07 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.04 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.91 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.78 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.71 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.68 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.61 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.58 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.56 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.42 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.04 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.82 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.63 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.37 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.95 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.52 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.33 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 93.61 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.09 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.69 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.5 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.18 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.78 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.4e-20 Score=182.08 Aligned_cols=372 Identities=10% Similarity=0.046 Sum_probs=195.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 007329 169 GGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDL 248 (608)
Q Consensus 169 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 248 (608)
..+.+.|++++|++.++++.+.. +-+...+..+...+...|++++|.+.++..++.. +.+..++..+..+|.+.|++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 34455566666666666665543 2234445555555555566666666665555543 22344555555555555555
Q ss_pred HHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 007329 249 VRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVI 325 (608)
Q Consensus 249 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 325 (608)
++|...+....+ .+...+..........+....+............ ................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhh
Confidence 555555544332 1222222233333333333333333333222211 112222222222333333334433333333
Q ss_pred HhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007329 326 KMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASV 405 (608)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 405 (608)
... +.+ ...+..+...+...|++++|...+++..+.. +-+...+..+
T Consensus 163 ~~~-~~~-------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 209 (388)
T d1w3ba_ 163 ETQ-PNF-------------------------------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL 209 (388)
T ss_dssp HHC-TTC-------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccC-cch-------------------------------hHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 321 122 2333444444445555555555555444432 1123444555
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCch
Q 007329 406 LSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSF 482 (608)
Q Consensus 406 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 482 (608)
...+...|++++|...++.....+ +.+...+..+...+.+.|++++|...|++.. ..+...|..+...+...|+++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHH
T ss_pred hhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 555555555555555555555443 3334444555555555666666666555443 223445666666667777777
Q ss_pred HHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc--
Q 007329 483 EALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-- 560 (608)
Q Consensus 483 ~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 560 (608)
+|++.++......+.+...+..+...+...|++++|.+.++++++..+. +...+..++.+|.+.|++++|.+.|+++
T Consensus 289 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777666555566667777777777777777777777777665443 4556667777777777777777777776
Q ss_pred -CC-CHHHHHHHHHHHHhcCC
Q 007329 561 -ER-DVSAWNILLTGYAERGQ 579 (608)
Q Consensus 561 -~~-~~~~~~~l~~~~~~~g~ 579 (608)
.| +...|..+...|.+.||
T Consensus 368 l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 368 ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCTTCHHHHHHHHHHHHHTCC
T ss_pred hCCCCHHHHHHHHHHHHHcCC
Confidence 33 46677777777777665
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.5e-20 Score=181.85 Aligned_cols=352 Identities=11% Similarity=0.061 Sum_probs=248.9
Q ss_pred hcCCCChhhHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCHhHHHHHHHHHHhcCChhHHH
Q 007329 207 CGGVPDLKRGKEVHVHVIRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPK---RDRISWNAMISGYFENGEYMKGL 283 (608)
Q Consensus 207 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 283 (608)
+.+.|++++|.+.++++.+.. +-+...+..+..+|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccc
Confidence 344456666666666655543 22344555555555555555555555554432 13444555555555555555555
Q ss_pred HHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCC---
Q 007329 284 MLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRME--- 360 (608)
Q Consensus 284 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--- 360 (608)
+.+..... .. +.+..............+....+........
T Consensus 88 ~~~~~~~~-----------------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (388)
T d1w3ba_ 88 EHYRHALR-----------------------------------LK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HHHHHHHH-----------------------------------HC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred cccccccc-----------------------------------cc-cccccccccccccccccccccccccccccccccc
Confidence 55554444 32 1222222222223333333333332222221
Q ss_pred CCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 007329 361 SKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTL 440 (608)
Q Consensus 361 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (608)
.................+....+...+....... .-+...+..+...+...|+++.|...++...+.. +.+...+..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 209 (388)
T d1w3ba_ 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 1333344445555666777777777777776653 2356777888889999999999999999988876 4567788899
Q ss_pred HHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHH
Q 007329 441 IDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMC 517 (608)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~ 517 (608)
...+...|++++|...+++.. ..+...+..+...+.+.|++++|++.|++..+..+-+..++..+...+...|++++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 289 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998766 34556788889999999999999999999986566678899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 518 GKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 518 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
|.+.++.+....+. +...+..++.+|.+.|++++|.+.++++ +.+..+|..+...|...|++++|.+.|++.++.
T Consensus 290 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 290 AEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHhhhccCCc-cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999887654 6778889999999999999999999997 446788999999999999999999999999874
Q ss_pred CCCCCch
Q 007329 594 KGNWRKL 600 (608)
Q Consensus 594 g~~p~~~ 600 (608)
.|+..
T Consensus 369 --~P~~~ 373 (388)
T d1w3ba_ 369 --SPTFA 373 (388)
T ss_dssp --CTTCH
T ss_pred --CCCCH
Confidence 88876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=6e-13 Score=125.39 Aligned_cols=236 Identities=10% Similarity=-0.021 Sum_probs=145.7
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 007329 339 LIKMYLSFGNREEGEKVFSRMES--K-DVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNL 415 (608)
Q Consensus 339 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 415 (608)
....+.+.|++++|...|+++.+ | +...|..+..+|...|++++|...|.+..+... -+...+..+...+...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccccc
Confidence 44455666666666666666543 2 344566666666666666666666666655421 1345555556666666666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhH--h
Q 007329 416 DLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMM--L 493 (608)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~--~ 493 (608)
+.|.+.++.+....... ........... ...+.......+..+...+.+.+|.+.|.+.. .
T Consensus 104 ~~A~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAY-AHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHhccch-HHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 66666666655432110 00000000000 00000011112223344556677788877776 2
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHH
Q 007329 494 NLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNI 569 (608)
Q Consensus 494 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~ 569 (608)
....+...+..+...+...|++++|...++++.+..+. +...|..++.+|.+.|++++|.+.++++ +.+..+|..
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 245 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 245 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHH
Confidence 23445677777888888888888888888888877655 5677778888888888888888888887 345778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 570 LLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 570 l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
++.+|...|++++|++.|++.++.
T Consensus 246 lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 246 LGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888888888888888888763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.3e-12 Score=121.35 Aligned_cols=259 Identities=11% Similarity=-0.016 Sum_probs=171.8
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCC
Q 007329 303 SVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVL 379 (608)
Q Consensus 303 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~ 379 (608)
.....+.+.|++++|...|+.+++.. +.+...|..+..+|...|++++|...|++..+ .+...|..+...|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 34556789999999999999999874 55677899999999999999999999988764 456788888999999999
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 380 PDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
+++|.+.+++..... |+................. ......+..+.+.+...+|.+.|.+
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGL-------------------GPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhccc-------------------ccchhhHHHHHHhhHHHHHHHHHHH
Confidence 999999999988753 3221110000000000000 0000011112223334445444443
Q ss_pred CC--C---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc
Q 007329 460 IP--D---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDG 534 (608)
Q Consensus 460 ~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 534 (608)
.. . .+...+..+...+...|++++|+..|++.....+-+...|..+..++...|++++|.+.++++++..+. +.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~ 240 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YI 240 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cH
Confidence 32 1 233456666777777778888888887777434446677777788888888888888888888776544 55
Q ss_pred cHHHHHHHHhHhcCCHHHHHHHHHhc---CCC------------HHHHHHHHHHHHhcCCHHHHH
Q 007329 535 FLPNALLDMYVRCGRMKPAWNQFNSN---ERD------------VSAWNILLTGYAERGQGALAE 584 (608)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~------------~~~~~~l~~~~~~~g~~~~A~ 584 (608)
..+..++.+|.+.|++++|.+.|+++ .|+ ...|..+-.++...|+.+.+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66777888888888888888888776 221 235666666776666665443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=2.8e-08 Score=93.87 Aligned_cols=157 Identities=10% Similarity=-0.084 Sum_probs=73.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----hhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCC-CC----cccchHHH
Q 007329 270 ISGYFENGEYMKGLMLFIMMREVLVDPD----FMTLSSVISASELVGDEKLGREVHGYVIKMGFS-DD----VSVCNPLI 340 (608)
Q Consensus 270 i~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~ 340 (608)
...+...|++++|++++++..+.....+ ...+..+...+...|++++|...++...+.... ++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445566666666666666555321111 123334444555566666666666555432100 00 12233344
Q ss_pred HHHHhcCChHHHHHHHhhCCC-------C----ChhhHHHHHHHHHcCCCchHHHHHHHHHHHCC----CCCCHHHHHHH
Q 007329 341 KMYLSFGNREEGEKVFSRMES-------K----DVVSWTTMISCYEGSVLPDKAVETYQMMEAEG----SMPDEITIASV 405 (608)
Q Consensus 341 ~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~l 405 (608)
..+...|++..+...+..... + ....+..+...+...|+++.+...+....... .......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 455555565555555443321 1 01123334445556666666666665554421 11123334444
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 007329 406 LSACACLGNLDLGIKLHQLAM 426 (608)
Q Consensus 406 l~~~~~~~~~~~a~~~~~~~~ 426 (608)
...+...++...+...+....
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~ 199 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLE 199 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHH
Confidence 445555555555555554443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1e-08 Score=94.88 Aligned_cols=205 Identities=9% Similarity=-0.020 Sum_probs=134.2
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPD-EITIASVLSACACLG-NLDLGIKLHQLAMRTGLISYIIIANTLIDM 443 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 443 (608)
.++.+...+.+.+.+++|+++++++.+. .|+ ...|.....++...| ++++|...++.+.+.. +-+..+|..+...
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 4555555667777778888888887775 344 445566666666655 4778888887777766 4556677777777
Q ss_pred hHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC------c
Q 007329 444 YSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG------A 514 (608)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~------~ 514 (608)
+.+.|++++|++.++++.+ .+...|..+...+.+.|++++|++.++++++-.+-+...|+.+...+.+.+ .
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhh
Confidence 7778888888888877663 355677777788888888888888888887444446666666555544433 3
Q ss_pred HHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC---CHHHHHHHHHHHH
Q 007329 515 LMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER---DVSAWNILLTGYA 575 (608)
Q Consensus 515 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~---~~~~~~~l~~~~~ 575 (608)
+++|.+.+..+++..+. +...|..+...+...| .+++.+.++.. .| +...+..++..|.
T Consensus 202 ~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 56777777777776655 5666666665554433 45555555544 33 3555566666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.4e-08 Score=93.87 Aligned_cols=192 Identities=10% Similarity=0.003 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcC-CHHHHHHHHccCC---CCCcccHHHHHHHH
Q 007329 400 ITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCK-CIDKALEVFHQIP---DKNVISWTSIILGL 475 (608)
Q Consensus 400 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 475 (608)
..++.+...+.+.+..++|+++++.+++.+ +-+...|+....++...| ++++|+..+++.. ..+..+|+.+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 456666667788899999999999999987 667778888888888876 5899999999876 34668899999999
Q ss_pred HhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC------
Q 007329 476 RLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR------ 549 (608)
Q Consensus 476 ~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------ 549 (608)
.+.|++++|++.+++++..-+.+...|..+...+...|++++|++.++.+++.++. +...|+.+..++.+.|.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 99999999999999999666668999999999999999999999999999998776 67778877777766655
Q ss_pred HHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007329 550 MKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSK 594 (608)
Q Consensus 550 ~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 594 (608)
+++|.+.+.++ +.+...|..+...+.. ...+++.+.+++..+..
T Consensus 202 ~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~ 249 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQ 249 (315)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhC
Confidence 67898888877 5578888888776554 44678888888887753
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=6.9e-08 Score=91.11 Aligned_cols=260 Identities=13% Similarity=-0.001 Sum_probs=174.7
Q ss_pred HHHHHhCCChHHHHHHHHHHhhcCCCCC----hhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCc-----chhHHhHHH
Q 007329 67 LNELCLNGSLEQALKYLDSMQELNICVD----EDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHL-----SVRLGNAFL 137 (608)
Q Consensus 67 l~~~~~~~~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 137 (608)
...+...|++++|+.++++..+.....+ ...+..+..++...|++++|...++...+..... ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4557789999999999999877442222 2345566678889999999999999887654321 123455666
Q ss_pred HHhhhcCChhhHHHHHcccCC-------CC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CCcchHHHH
Q 007329 138 SMFVKFGDLGHAWYVFGKMCD-------RD----LFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVK---PDVYTFPCV 203 (608)
Q Consensus 138 ~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---p~~~~~~~l 203 (608)
..+...|++..|...+..... +. ...+..+...+...|+++.+...+.......... .....+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 778888999999888876521 11 1245566678888999999999998887643111 122334445
Q ss_pred HHHhcCCCChhhHHHHHHHHHHhCCC----C--chhHHHHHHHHHHhcCCHHHHHHHHccCCCC-------CHhHHHHHH
Q 007329 204 LRTCGGVPDLKRGKEVHVHVIRFGYE----A--DVDVVNALITMYVKCGDLVRARLVFDGMPKR-------DRISWNAMI 270 (608)
Q Consensus 204 l~~~~~~~~~~~a~~~~~~~~~~g~~----~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li 270 (608)
...+...++...+...+......... + ....+..+...+...|+.++|...++..... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 55566778888888877766553211 1 1234556666777888888888888776542 234566677
Q ss_pred HHHHhcCChhHHHHHHHHHHH----CCCCCC-hhHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 007329 271 SGYFENGEYMKGLMLFIMMRE----VLVDPD-FMTLSSVISASELVGDEKLGREVHGYVIK 326 (608)
Q Consensus 271 ~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 326 (608)
..+...|++++|...+++... .+..|+ ...+..+...+...|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888887653 233333 23455566677777888888877776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=4.2e-08 Score=90.51 Aligned_cols=179 Identities=11% Similarity=0.022 Sum_probs=138.2
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCC--C-C-cccHHHHHHHHHhCCCchHHHHHHH
Q 007329 414 NLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPD--K-N-VISWTSIILGLRLNNRSFEALIFFR 489 (608)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (608)
..+.+..+++..++...+.+...+...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4567788888877655555667778888888889999999999987653 2 2 2367888888888999999999999
Q ss_pred HhHhCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC---
Q 007329 490 KMMLNLKPNSVTLVSILSA-CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER--- 562 (608)
Q Consensus 490 ~m~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~--- 562 (608)
+++...+.+...|...... +...|+.+.|..+++.+.+..+. ++..|..+++.+.+.|+++.|+.+|++. .|
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 9884444455555544433 34468899999999999887444 5778888999999999999999999987 22
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 563 --DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 563 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
....|...+..-...|+.+.+..+++++.+.
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2457888888888899999999999998775
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=1e-07 Score=85.48 Aligned_cols=214 Identities=13% Similarity=0.046 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHH
Q 007329 381 DKAVETYQMMEAEGSMPD---EITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVF 457 (608)
Q Consensus 381 ~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 457 (608)
+.++.-+++........+ ..++..+...|.+.|+++.|.+.|+..++.. +-+..+|..+..+|.+.|++++|.+.|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 455555555554321111 2355566677778888888888888877765 556777788888888888888888888
Q ss_pred ccCCC--C-CcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc
Q 007329 458 HQIPD--K-NVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDG 534 (608)
Q Consensus 458 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 534 (608)
+++.+ | +...|..+..++...|++++|++.|++.....+.+......+..++.+.+..+....+......... +.
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 172 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQ 172 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC--CS
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch--hh
Confidence 87762 2 4557777888888888888898888888844444555555555555555655555555554444322 22
Q ss_pred cHHHHHHHHhHhcCC----HHHHHHHHHhc---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 535 FLPNALLDMYVRCGR----MKPAWNQFNSN---ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 535 ~~~~~l~~~~~~~g~----~~~A~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..++ ++..+..... .+.+...+... .| ...+|..+...|...|++++|.+.|++.++. .|+..
T Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~ 243 (259)
T d1xnfa_ 173 WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF 243 (259)
T ss_dssp THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC
T ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCH
Confidence 2222 2233222222 22222222222 12 2456778889999999999999999999874 77654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=2e-09 Score=101.09 Aligned_cols=172 Identities=6% Similarity=-0.117 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHhCCCCchhHH-HHHHHHhHhcCCHHHHHHHHccCCCC---CcccHHHHHHHHHhCCCchHHHHHHHH
Q 007329 415 LDLGIKLHQLAMRTGLISYIIIA-NTLIDMYSKCKCIDKALEVFHQIPDK---NVISWTSIILGLRLNNRSFEALIFFRK 490 (608)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (608)
++.+...+..+.+... .+...+ ......+...+..++|+..++.+.+. +...|+.+...+.+.|++++|...++.
T Consensus 125 ~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~ 203 (334)
T d1dcea1 125 WARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (334)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred HHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4444444444444431 122222 22233444445555555555544432 223444445555555555544433333
Q ss_pred hHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc-CC---CHHH
Q 007329 491 MMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN-ER---DVSA 566 (608)
Q Consensus 491 m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~~ 566 (608)
... ..|+. ..+...+...+..+++...+.......+. +...+..++..+...|++++|.+.+.+. +. +..+
T Consensus 204 ~~~-~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 278 (334)
T d1dcea1 204 PEN-VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLT 278 (334)
T ss_dssp CHH-HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHH-hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHH
Confidence 321 11111 11122233334444555555554443332 3333344455555555666666555555 22 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 567 WNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 567 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
|..++..|...|++++|.+.+++.++
T Consensus 279 ~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 279 IILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555555555666666666666555
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.82 E-value=1.1e-07 Score=87.61 Aligned_cols=181 Identities=8% Similarity=0.026 Sum_probs=133.3
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHcc
Q 007329 380 PDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQ 459 (608)
Q Consensus 380 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 459 (608)
.++|..+|++..+...+-+...+...+....+.|+++.|..+++.+.+........+|...+..+.+.|+++.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 46777788877765444455666677777778888888888888877654333345677888888888888888888887
Q ss_pred CCCCCc---ccHHHHHHH-HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC-CCC-
Q 007329 460 IPDKNV---ISWTSIILG-LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV-AFD- 533 (608)
Q Consensus 460 ~~~~~~---~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~- 533 (608)
+.+..+ ..|...... +...|+.+.|..+|+.+....+.+...+...+..+...|++++|+.+|+++++... .|+
T Consensus 160 al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 764332 233333222 23457888899999999855666788888999999999999999999999887653 333
Q ss_pred -ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 534 -GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 534 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
...|...+..-...|+.+.+.++.+++
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 246777787777889999999998876
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.77 E-value=1e-07 Score=89.17 Aligned_cols=218 Identities=9% Similarity=0.033 Sum_probs=154.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCC--CChhhHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCH
Q 007329 172 AKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGV--PDLKRGKEVHVHVIRFGYEADVDVV-NALITMYVKCGDL 248 (608)
Q Consensus 172 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~ 248 (608)
...|++++|+.+++...+.. +-+...|..+..++... +++++|...++.+++.. +++...+ ......+...|..
T Consensus 84 ~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcccc
Confidence 34455778888888887754 44555555555555444 45788888888888874 3344444 3445677778999
Q ss_pred HHHHHHHccCCCC---CHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHH
Q 007329 249 VRARLVFDGMPKR---DRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVI 325 (608)
Q Consensus 249 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 325 (608)
++|+..++..... +...|+.+...+.+.|++++|...+....+. .|+ .......+...+..+.+...+....
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999888764 6778888888899998888776555433321 111 1223344556677778888888777
Q ss_pred HhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCCh---hhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHH
Q 007329 326 KMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDV---VSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEI 400 (608)
Q Consensus 326 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 400 (608)
... +++...+..+...+...|+.++|...+.+..+.++ ..|..+..+|...|++++|++.+++..+. .|+..
T Consensus 236 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~ 310 (334)
T d1dcea1 236 LGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRA 310 (334)
T ss_dssp HSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGH
T ss_pred HhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccH
Confidence 664 56677788888888899999999999998887544 45666777888899999999999988875 46543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=3.2e-08 Score=88.80 Aligned_cols=93 Identities=13% Similarity=-0.057 Sum_probs=44.0
Q ss_pred cchHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007329 335 VCNPLIKMYLSFGNREEGEKVFSRMES---KDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC 411 (608)
Q Consensus 335 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 411 (608)
++..+...|.+.|++++|...|++..+ .+..+|+.+..+|.+.|++++|+..|++..+... -+..++..+...+..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHHH
Confidence 344444555555555555555554432 2334455555555555555555555555544321 123344444444445
Q ss_pred cCChHHHHHHHHHHHHh
Q 007329 412 LGNLDLGIKLHQLAMRT 428 (608)
Q Consensus 412 ~~~~~~a~~~~~~~~~~ 428 (608)
.|+++.|...++...+.
T Consensus 118 ~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhh
Confidence 55555555555544443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=5.6e-07 Score=75.88 Aligned_cols=120 Identities=15% Similarity=-0.056 Sum_probs=98.7
Q ss_pred HHHhHhcCCHHHHHHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007329 441 IDMYSKCKCIDKALEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKE 520 (608)
Q Consensus 441 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 520 (608)
...+...|+++.|++.|+++.+++...|..+..+|...|++++|++.|++.++--+.+...|..+..++.+.|++++|..
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 34567789999999999999888888999999999999999999999999995455678889999999999999999999
Q ss_pred HHHHHHHhCCCC------------C---ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 521 IHAHALRIGVAF------------D---GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 521 ~~~~~~~~~~~p------------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.|+++++..... . ..++..+..+|.+.|++++|.+.++.+
T Consensus 92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999887642211 1 133455777888899999999988876
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.5e-06 Score=73.10 Aligned_cols=122 Identities=11% Similarity=-0.009 Sum_probs=104.7
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHH
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMK 551 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 551 (608)
...+...|++++|++.|.++ .+|+..++..+..++...|++++|.+.|+++++.++. ++..|..++.+|.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence 55678899999999999875 4678889999999999999999999999999998876 6788999999999999999
Q ss_pred HHHHHHHhc----CCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 007329 552 PAWNQFNSN----ERD----------------VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNW 597 (608)
Q Consensus 552 ~A~~~~~~~----~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 597 (608)
+|.+.|++. +.+ ..++..+..++...|++++|.+.+++..+....|
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999886 211 3566778889999999999999999988764443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=1.1e-06 Score=67.21 Aligned_cols=92 Identities=8% Similarity=0.021 Sum_probs=62.4
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHH
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGA 581 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 581 (608)
...+...|++++|...|+++++..+. +...|..+..+|.+.|++++|+..++++ +.+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 44556667777777777777666554 5666666777777777777777777666 446667777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCch
Q 007329 582 LAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 582 ~A~~~~~~m~~~g~~p~~~ 600 (608)
+|+..|++.++. .|++.
T Consensus 89 ~A~~~~~~a~~~--~p~~~ 105 (117)
T d1elwa_ 89 EAKRTYEEGLKH--EANNP 105 (117)
T ss_dssp HHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHh--CCCCH
Confidence 777777777763 55554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2.7e-06 Score=64.91 Aligned_cols=100 Identities=13% Similarity=-0.065 Sum_probs=81.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM 550 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (608)
-...+.+.|++++|+..|++.+.-.+.+...|..+..++...|++++|+..+..+++.++. +...|..++.+|...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 4566788899999999999988556667888999999999999999999999999988776 778888899999999999
Q ss_pred HHHHHHHHhc---CC-CHHHHHHHH
Q 007329 551 KPAWNQFNSN---ER-DVSAWNILL 571 (608)
Q Consensus 551 ~~A~~~~~~~---~~-~~~~~~~l~ 571 (608)
++|...|+++ .| +...+..+.
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQ 112 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999888 44 444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=1.8e-06 Score=73.55 Aligned_cols=94 Identities=9% Similarity=-0.099 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhH
Q 007329 466 ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYV 545 (608)
Q Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (608)
..+......|.+.|++++|+..|++.+.-.+.+...|..+..+|.+.|++++|+..++++++..+. +...|..++.+|.
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~~~ 83 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 334445556666666666666666666334445566666666666666666666666666554333 3445556666666
Q ss_pred hcCCHHHHHHHHHhc
Q 007329 546 RCGRMKPAWNQFNSN 560 (608)
Q Consensus 546 ~~g~~~~A~~~~~~~ 560 (608)
+.|++++|...|+++
T Consensus 84 ~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 84 EMESYDEAIANLQRA 98 (201)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 666666666666655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=3.5e-06 Score=68.47 Aligned_cols=115 Identities=10% Similarity=-0.088 Sum_probs=88.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCH
Q 007329 471 IILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRM 550 (608)
Q Consensus 471 l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (608)
....|.+.|++++|+..|++.+.-.+.+...|..+..++...|++++|.+.++++++..+. +...|..++.+|...|++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 4567888899999999999888555667888888999999999999999999999988765 667888889999999999
Q ss_pred HHHHHHHHhc---CC-CHHHHHHHHHHH--HhcCCHHHHHHH
Q 007329 551 KPAWNQFNSN---ER-DVSAWNILLTGY--AERGQGALAEEF 586 (608)
Q Consensus 551 ~~A~~~~~~~---~~-~~~~~~~l~~~~--~~~g~~~~A~~~ 586 (608)
++|.+.++++ .| +...+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999888 44 455555554443 333445555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=7e-06 Score=74.37 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=34.5
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 007329 370 MISCYEGSVLPDKAVETYQMMEAE----GSMPD-EITIASVLSACACLGNLDLGIKLHQLAMR 427 (608)
Q Consensus 370 li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 427 (608)
....|...|++++|.+.|.+..+. +-.++ ..+|..+...|.+.|++++|.+.++...+
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 355666677777777777665542 11111 24566666667777777777776665443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.37 E-value=5.6e-06 Score=75.02 Aligned_cols=127 Identities=9% Similarity=-0.009 Sum_probs=66.4
Q ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhc----CCCC-ChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcc-----hhH
Q 007329 63 PNSRLNELCLNGSLEQALKYLDSMQEL----NICV-DEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLS-----VRL 132 (608)
Q Consensus 63 ~~~ll~~~~~~~~~~~A~~~~~~~~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 132 (608)
|......|...|++++|++.|++..+. +-.+ -..+|..+..++.+.|++++|...++...+.....+ ...
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 455556666677777777777766442 1111 123455556666666677776666665544322111 223
Q ss_pred HhHHHHHhhh-cCChhhHHHHHcccCC-----CC----cchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007329 133 GNAFLSMFVK-FGDLGHAWYVFGKMCD-----RD----LFSWNVLIGGYAKAGFFDEALSLYQRMFW 189 (608)
Q Consensus 133 ~~~l~~~~~~-~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 189 (608)
+..+...|.. .|++++|...+++..+ .+ ..+|..+...+...|++++|++.|++...
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 3344444432 3666666666655411 11 12345555556666666666666666554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=4.6e-06 Score=67.77 Aligned_cols=96 Identities=7% Similarity=0.011 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhc
Q 007329 502 LVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAER 577 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~ 577 (608)
+......+.+.|++++|...|+++++..+. +...|..++.+|...|++++|.+.|+++ +.+..+|..++.+|...
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 344566788999999999999999998876 7888999999999999999999999998 55678999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCch
Q 007329 578 GQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 578 g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
|++++|.+.+++.... .|++.
T Consensus 92 g~~~eA~~~~~~a~~~--~p~~~ 112 (159)
T d1a17a_ 92 GKFRAALRDYETVVKV--KPHDK 112 (159)
T ss_dssp TCHHHHHHHHHHHHHH--STTCH
T ss_pred CCHHHHHHHHHHHHHc--CCCCH
Confidence 9999999999999986 67665
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.28 E-value=3e-06 Score=63.98 Aligned_cols=84 Identities=10% Similarity=-0.066 Sum_probs=53.0
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHH
Q 007329 506 LSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGA 581 (608)
Q Consensus 506 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 581 (608)
...+.+.|++++|...++++++..+. +...|..++.+|.+.|++++|...++++ +.+...|..+...|...|+++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 44455566666666666666665544 4556666666666666666666666665 334666666666666667777
Q ss_pred HHHHHHHHH
Q 007329 582 LAEEFFRKM 590 (608)
Q Consensus 582 ~A~~~~~~m 590 (608)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.24 E-value=8.1e-07 Score=75.80 Aligned_cols=128 Identities=7% Similarity=-0.133 Sum_probs=94.8
Q ss_pred CchhHHHHHHHHhHhcCCHHHHHHHHccCC---CCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHH
Q 007329 432 SYIIIANTLIDMYSKCKCIDKALEVFHQIP---DKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSA 508 (608)
Q Consensus 432 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~ 508 (608)
|+...+......|.+.|++++|+..|++.. ..+...|+.+..+|.+.|++++|+..|++.+.-.+-+..+|..+..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 566667778889999999999999999765 34667899999999999999999999999983334467789999999
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 509 CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+...|++++|...++++.+..+.. ...+...+..+.+.+....+.......
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~ 132 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAKEQ-RLNFGDDIPSALRIAKKKRWNSIEERR 132 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT-TCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999888654321 112222344444444444444444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=4e-06 Score=64.08 Aligned_cols=94 Identities=10% Similarity=0.009 Sum_probs=63.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC---CHHHHHHHHHhc---CCCH---HHHHHHHHHH
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG---RMKPAWNQFNSN---ERDV---SAWNILLTGY 574 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~---~~~~---~~~~~l~~~~ 574 (608)
.++..+...+++++|.+.|+.+.+.++. ++.++..+..++.+.+ ++++|+.+++++ .|++ .+|..|..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4566666777777777777777776655 5666666777776544 344577777776 2322 2566777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 575 AERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 575 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+.|++++|.+.|+++++. .|++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 7888888888888888774 67765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.19 E-value=4.6e-06 Score=62.92 Aligned_cols=91 Identities=13% Similarity=-0.104 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc
Q 007329 468 WTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC 547 (608)
Q Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 547 (608)
+..+...+.+.|++++|+..|++.+...+-+...|..+..++.+.|++++|...++++++..+. +...+..++..|...
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHC
Confidence 3456677888999999999999988444557888999999999999999999999999988766 677888899999999
Q ss_pred CCHHHHHHHHHh
Q 007329 548 GRMKPAWNQFNS 559 (608)
Q Consensus 548 g~~~~A~~~~~~ 559 (608)
|++++|.+.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999998876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=7.6e-06 Score=62.48 Aligned_cols=97 Identities=11% Similarity=-0.071 Sum_probs=77.1
Q ss_pred HHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHh
Q 007329 469 TSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIG---ALMCGKEIHAHALRIGVAFDG-FLPNALLDMY 544 (608)
Q Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~ 544 (608)
..++..+...+++++|.+.|++.+..-+.+..++..+..++.+.+ ++++|..+++++.+.++.|+. .++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457778888889999999999998656678888888998888654 555789999988876655543 4677789999
Q ss_pred HhcCCHHHHHHHHHhc---CCCHH
Q 007329 545 VRCGRMKPAWNQFNSN---ERDVS 565 (608)
Q Consensus 545 ~~~g~~~~A~~~~~~~---~~~~~ 565 (608)
.+.|++++|.+.|+++ .|+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhhHHHHHHHHHHHHhCcCCH
Confidence 9999999999999988 56533
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=0.0031 Score=56.79 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=27.0
Q ss_pred HHHHhHhcCCHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHH
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN--ERDVSAWNILLTGYAERGQGAL 582 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 582 (608)
+++.+.+.+++.-....++.. ..+....++|...|...++++.
T Consensus 254 ~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 254 AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHHHHHhCcchhHH
Confidence 344444455555555555544 3356778899999999998654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.04 E-value=0.00094 Score=58.84 Aligned_cols=220 Identities=12% Similarity=-0.062 Sum_probs=119.4
Q ss_pred hHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 007329 366 SWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACAC----LGNLDLGIKLHQLAMRTGLISYIIIANTLI 441 (608)
Q Consensus 366 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 441 (608)
.+..+...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...+...+....+.+.. .....+.
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~l~ 77 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhccc
Confidence 34444444555566666666666665554 33344444444433 34555566555555544411 1112222
Q ss_pred HHhH----hcCCHHHHHHHHccCCCCC-cccHHHHHHHHHh----CCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhc-
Q 007329 442 DMYS----KCKCIDKALEVFHQIPDKN-VISWTSIILGLRL----NNRSFEALIFFRKMMLNLKPNSVTLVSILSACAR- 511 (608)
Q Consensus 442 ~~~~----~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~- 511 (608)
..+. ...+.+.|...++...+.+ ......+...+.. ......+...+.... ...+...+..+...+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC--DLNDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHT
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhh--cccccchhhhhhhhhccC
Confidence 2222 2345555555555443222 1222222222222 223344444444443 22344455555555553
Q ss_pred ---cCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cCCHHHHHHHHHhc--CCCHHHHHHHHHHHHh----cC
Q 007329 512 ---IGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CGRMKPAWNQFNSN--ERDVSAWNILLTGYAE----RG 578 (608)
Q Consensus 512 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~g 578 (608)
..+...+...++...+.| +......|...|.. ..++++|...|++. .-++..+..|...|.. ..
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~ 232 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTR 232 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSC
T ss_pred CCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCcc
Confidence 346666777777776655 44555556666654 56889999999888 5677788888887765 34
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 007329 579 QGALAEEFFRKMIDSKGN 596 (608)
Q Consensus 579 ~~~~A~~~~~~m~~~g~~ 596 (608)
+.++|.++|++..+.|..
T Consensus 233 n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 233 NEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CSTTHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHCcCH
Confidence 788899999998887643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3.3e-05 Score=59.64 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC------ccHHHHHHHH
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFD------GFLPNALLDM 543 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~ 543 (608)
.+...+.+.|++++|++.|.+.+.-.+.+...+..+..+|.+.|++++|.+.++++++..+... ..+|..++..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 4455666666666777666666643444566666666666677777777776666665432211 1234445555
Q ss_pred hHhcCCHHHHHHHHHhc
Q 007329 544 YVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 544 ~~~~g~~~~A~~~~~~~ 560 (608)
+...+++++|.+.|++.
T Consensus 89 ~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 55556666666666554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=9.6e-05 Score=60.26 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHHHH
Q 007329 500 VTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTGYA 575 (608)
Q Consensus 500 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~~~ 575 (608)
.+|+.+..+|.+.|++++|...++.+++.++. ++..+..++.+|...|++++|...|+++ .| |......+.....
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35666777888888899999988888887765 6777888888888999999999988887 44 5666555555544
Q ss_pred hcC
Q 007329 576 ERG 578 (608)
Q Consensus 576 ~~g 578 (608)
..+
T Consensus 142 ~~~ 144 (170)
T d1p5qa1 142 RIR 144 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.004 Score=56.06 Aligned_cols=282 Identities=10% Similarity=0.034 Sum_probs=132.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcC
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFG 144 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (608)
.....+.+.|.++.|..+|..+. -|..++..+.+.+++..|.+..... .+..+|..+...+.+..
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 83 (336)
T ss_dssp ----------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCc
Confidence 33444456777777777776543 2555666666666666665554322 13445566666666555
Q ss_pred ChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHH
Q 007329 145 DLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVI 224 (608)
Q Consensus 145 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 224 (608)
....|.-. ......+......++..|-..|.+++...+++...... ..+...++.++..+++.+ ..++.+.+.
T Consensus 84 e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~~----~~kl~e~l~ 156 (336)
T d1b89a_ 84 EFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFK----PQKMREHLE 156 (336)
T ss_dssp CHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTC----HHHHHHHHH
T ss_pred HHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHhC----hHHHHHHHH
Confidence 54443221 11111233334556666666677777666666654322 344455566666665542 122333333
Q ss_pred HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHH
Q 007329 225 RFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSV 304 (608)
Q Consensus 225 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 304 (608)
..+.. =+++++.++.++. ..|..++..|.+.|++++|..++-. . .++..-....
T Consensus 157 ~~s~~----------------y~~~k~~~~c~~~-----~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f 210 (336)
T d1b89a_ 157 LFWSR----------------VNIPKVLRAAEQA-----HLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQF 210 (336)
T ss_dssp HHSTT----------------SCHHHHHHHHHTT-----TCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHH
T ss_pred hcccc----------------CCHHHHHHHHHHc-----CChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHH
Confidence 22111 1122222222221 1234455555666666666554321 1 2233333344
Q ss_pred HHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHcCCCchHHH
Q 007329 305 ISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSWTTMISCYEGSVLPDKAV 384 (608)
Q Consensus 305 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 384 (608)
+..+.+..+.+...++.....+. ++...+.++......-+..+..+. +-+.++.....
T Consensus 211 ~e~~~k~~N~e~~~~~i~~yL~~----~p~~i~~lL~~v~~~~d~~r~V~~------------------~~k~~~l~li~ 268 (336)
T d1b89a_ 211 KDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNY------------------FSKVKQLPLVK 268 (336)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHH----CGGGHHHHHHHHGGGCCHHHHHHH------------------HHHTTCTTTTH
T ss_pred HHHHHccCChHHHHHHHHHHHHc----CHHHHHHHHHHhccCCCHHHHHHH------------------HHhcCCcHHHH
Confidence 44455555555555554444432 123334444444444444444333 34455556666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 007329 385 ETYQMMEAEGSMPDEITIASVLSACACLGNLDLGI 419 (608)
Q Consensus 385 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 419 (608)
..++..+..| +....+++...|...++++.-+
T Consensus 269 p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 269 PYLRSVQNHN---NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHH
Confidence 6666655544 3456677777777777755433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.7e-05 Score=58.73 Aligned_cols=96 Identities=9% Similarity=0.043 Sum_probs=81.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-C-------HHHHHHH
Q 007329 502 LVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-D-------VSAWNIL 570 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~-------~~~~~~l 570 (608)
+..+...+...|++++|.+.|+++++.++. +...+..+..+|.+.|++++|.+.++++ .| + ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 456778899999999999999999998776 7888999999999999999999999987 12 1 2477788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 007329 571 LTGYAERGQGALAEEFFRKMIDSKGNWR 598 (608)
Q Consensus 571 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 598 (608)
...+...+++++|++.|++.....-.|+
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~~~~~ 113 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPD 113 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence 8899999999999999999887643443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=9e-05 Score=60.45 Aligned_cols=63 Identities=11% Similarity=-0.042 Sum_probs=56.5
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+|+.+..+|.+.|++++|...++++ +.++..|..++.+|...|++++|...|++.++. .|++.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~ 130 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNK 130 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCH
Confidence 5667888999999999999999988 457889999999999999999999999999985 77765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.85 E-value=0.0011 Score=58.49 Aligned_cols=228 Identities=12% Similarity=-0.013 Sum_probs=110.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcC----CCChhhHHHHHHHHHHhCCCCchhHH
Q 007329 160 DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGG----VPDLKRGKEVHVHVIRFGYEADVDVV 235 (608)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 235 (608)
|+..+..|...+.+.+++++|+++|++..+.| |...+..|...+.. ..+...|...++...+.+ +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence 34456666666677777788887777776654 33333334433332 345555655555555544 11222
Q ss_pred HHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHH----hhc
Q 007329 236 NALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISAS----ELV 311 (608)
Q Consensus 236 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~ 311 (608)
..+...+... .....+.+.|...++...+.|.... ...+...+ ...
T Consensus 74 ~~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~ 123 (265)
T d1ouva_ 74 HLLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVT 123 (265)
T ss_dssp HHHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSC
T ss_pred hccccccccc---------------------------cccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCccc
Confidence 2222222210 0012233444444444433332111 11111111 112
Q ss_pred CChhhHHHHHHHHHHhCCCCCcccchHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHHHHHc----CCCchH
Q 007329 312 GDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLS----FGNREEGEKVFSRMES-KDVVSWTTMISCYEG----SVLPDK 382 (608)
Q Consensus 312 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~ 382 (608)
.....+...+......+ +...+..|...|.. ..+...+..+++...+ .+......+...|.. ..++++
T Consensus 124 ~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred chhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhh
Confidence 22333334443333322 33334444444443 2344455555554433 344444444444443 456788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHhCC
Q 007329 383 AVETYQMMEAEGSMPDEITIASVLSACAC----LGNLDLGIKLHQLAMRTGL 430 (608)
Q Consensus 383 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 430 (608)
|+..|++..+.| ++..+..|...|.+ ..+.+.|.++|+...+.|.
T Consensus 201 A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 888888887776 45555556665554 3367788888888777763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=1.5e-06 Score=85.61 Aligned_cols=227 Identities=9% Similarity=-0.038 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHHHHHHhhCCCCChhhH-HHHHHHHHcCCCchHHHHHHHHHHHCC
Q 007329 316 LGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEGEKVFSRMESKDVVSW-TTMISCYEGSVLPDKAVETYQMMEAEG 394 (608)
Q Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g 394 (608)
+|.+.+++..+.. +.....+..+..++...|++++| |+++...|.... ..-+....-...+..+.+.++...+..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~~ 79 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNR 79 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4556666665542 22244555566666666666655 333322121110 000000000112345666666665544
Q ss_pred CCCCHHHHHHHHHHH--HccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHHHHHHccCCCCCc-ccHHHH
Q 007329 395 SMPDEITIASVLSAC--ACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKALEVFHQIPDKNV-ISWTSI 471 (608)
Q Consensus 395 ~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l 471 (608)
..++..-....+..+ ...+.++.++..+....+.. .++...+..+...+.+.|+.++|...+.....++. ..+..+
T Consensus 80 ~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~L 158 (497)
T d1ya0a1 80 ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHL 158 (497)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 333332222222111 12333444444333322222 23344556666777777888887776665443332 356667
Q ss_pred HHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcC
Q 007329 472 ILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCG 548 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 548 (608)
...+...|++++|+..|++...-.+.+...|+.+...+...|+..+|...|.+.+.... |.+..+..|...|.+..
T Consensus 159 G~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhh
Confidence 77888888888888888888854555667888888888888888888888888876553 35566667776665443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.78 E-value=0.00015 Score=57.91 Aligned_cols=57 Identities=18% Similarity=0.010 Sum_probs=30.7
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMID 592 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 592 (608)
+|..+..+|.+.|++++|++.++++ +.+..+|..++.++...|++++|...|++.++
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555555555554 33445555555555555555555555555555
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.76 E-value=0.00027 Score=56.32 Aligned_cols=106 Identities=8% Similarity=-0.043 Sum_probs=85.0
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHhHhC-----CCCCH-----------HHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 467 SWTSIILGLRLNNRSFEALIFFRKMMLN-----LKPNS-----------VTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
.+......+.+.|++.+|+..|++.+.- ..++. .+|..+..+|.+.|++++|++.++.+++.++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p 98 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 98 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc
Confidence 4556677899999999999999998821 11222 3567788899999999999999999999876
Q ss_pred CCCccHHHHHHHHhHhcCCHHHHHHHHHhc---CC-CHHHHHHHHHH
Q 007329 531 AFDGFLPNALLDMYVRCGRMKPAWNQFNSN---ER-DVSAWNILLTG 573 (608)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~-~~~~~~~l~~~ 573 (608)
. +...|..++.+|...|++++|...|+++ .| |..++..+...
T Consensus 99 ~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 99 N-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred h-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5 7788999999999999999999999998 55 55555554433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.71 E-value=0.0005 Score=55.70 Aligned_cols=90 Identities=9% Similarity=0.048 Sum_probs=62.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHh
Q 007329 501 TLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAE 576 (608)
Q Consensus 501 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~ 576 (608)
.|..+..++.+.|++++|+..++.+++..+. +...|..++.+|...|++++|.+.|+++ +.+...+..+......
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4556677778888888888888888887655 6677777888888888888888888887 3455566655555444
Q ss_pred cCCH-HHHHHHHHHHH
Q 007329 577 RGQG-ALAEEFFRKMI 591 (608)
Q Consensus 577 ~g~~-~~A~~~~~~m~ 591 (608)
.++. +...+++.+|.
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4433 23445544443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.68 E-value=5.5e-05 Score=66.46 Aligned_cols=118 Identities=8% Similarity=-0.068 Sum_probs=90.8
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHH
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAW 554 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 554 (608)
..+.|++++|+..+++.++..+.|...+..+...++..|++++|.+.++.+.+..+. +...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 456799999999999999777788999999999999999999999999999987655 4455555666666666666554
Q ss_pred HHHHhc----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 555 NQFNSN----ER-DVSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 555 ~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
.-.... .| +...+......+...|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 443332 22 2334445566788899999999999999886
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.61 E-value=0.00016 Score=58.85 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=28.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 502 LVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 502 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
|..+..++.+.|++++|+..++++++..+. ++..|..++.+|.+.|++++|.+.|+++
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~a 137 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKA 137 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHH
Confidence 344444444455555555555554444332 3444444555555555555555555544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.59 E-value=0.00024 Score=57.84 Aligned_cols=64 Identities=8% Similarity=-0.103 Sum_probs=43.0
Q ss_pred cHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 535 FLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
..+..+..+|.+.|++++|+..++++ +.+...|..+..+|...|++++|++.|++.++. .|+..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~ 145 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDK 145 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCH
Confidence 34555666777777777777777766 445667777777777777777777777777764 55543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=0.00041 Score=56.67 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=80.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCC
Q 007329 470 SIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGR 549 (608)
Q Consensus 470 ~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (608)
.........|++++|.+.|.+.+. +.+... +........+...-..+... ....+..++..+.+.|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~-l~rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALR-EWRGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT-TCCSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-hCcccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 344567888999999999998882 111110 00001111111111111111 12356678899999999
Q ss_pred HHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCch
Q 007329 550 MKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMI-----DSKGNWRKL 600 (608)
Q Consensus 550 ~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~ 600 (608)
+++|...++++ +-+...|..++.+|...|+.++|++.|+++. +.|+.|..-
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 99999999998 5578899999999999999999999999984 358998864
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.56 E-value=0.00015 Score=57.09 Aligned_cols=114 Identities=10% Similarity=-0.087 Sum_probs=77.6
Q ss_pred HHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhcc----------CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHh
Q 007329 475 LRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARI----------GALMCGKEIHAHALRIGVAFDGFLPNALLDMY 544 (608)
Q Consensus 475 ~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (608)
|-+.+.+++|++.|+..+...|.+...+..+..++... +.+++|...++++++.++. +...|..++.+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHH
Confidence 34455677888888888755566777777777777643 4457788888888887766 667777788888
Q ss_pred HhcC-----------CHHHHHHHHHhc---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 007329 545 VRCG-----------RMKPAWNQFNSN---ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 545 ~~~g-----------~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 595 (608)
...| .+++|.+.|+++ .|+...|..-+..+ ..|.+++.+..+.|+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence 7654 367888888887 66655544433333 456777777766654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.42 E-value=0.0012 Score=53.36 Aligned_cols=63 Identities=11% Similarity=-0.046 Sum_probs=56.3
Q ss_pred HHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 536 LPNALLDMYVRCGRMKPAWNQFNSN----ERDVSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 536 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
+|..+..+|.+.|++++|+..++++ +.+..+|..+..+|...|++++|.+.|+++++. .|+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~ 132 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNK 132 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence 4566788899999999999999998 667889999999999999999999999999984 78775
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=5.1e-05 Score=74.28 Aligned_cols=158 Identities=8% Similarity=-0.095 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHH--HHHhHhcCCHHHHHHHHccCCC---CCcccHHHHHHHHHhCCCchHHHHHHHH
Q 007329 416 DLGIKLHQLAMRTGLISYIIIANTL--IDMYSKCKCIDKALEVFHQIPD---KNVISWTSIILGLRLNNRSFEALIFFRK 490 (608)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (608)
..+.+.++...+....++..-.... ...+...+.++.|+..+....+ ++...+..+...+.+.|+.++|...++.
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 145 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSS 145 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCH
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHH
Confidence 4455555555543323332222211 1223345667777777776543 3456677888888999999999888877
Q ss_pred hHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc----CCCHHH
Q 007329 491 MMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN----ERDVSA 566 (608)
Q Consensus 491 m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~ 566 (608)
... .. ...++..+...+...|++++|...++++.+..+. +...|+.|+..|...|+..+|...|.+. +|.+.+
T Consensus 146 al~-~~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a 222 (497)
T d1ya0a1 146 SCS-YI-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHH-HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HhC-CC-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHH
Confidence 651 11 1356778889999999999999999999998776 7889999999999999999999999887 667777
Q ss_pred HHHHHHHHHh
Q 007329 567 WNILLTGYAE 576 (608)
Q Consensus 567 ~~~l~~~~~~ 576 (608)
+..|...+.+
T Consensus 223 ~~nL~~~~~~ 232 (497)
T d1ya0a1 223 STNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=0.0011 Score=54.06 Aligned_cols=71 Identities=4% Similarity=-0.041 Sum_probs=46.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHH-----hCCCCchhH
Q 007329 162 FSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIR-----FGYEADVDV 234 (608)
Q Consensus 162 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~ 234 (608)
..+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|.+.|+.+.+ .|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345566666777777777777777776654 45666677777777777777777777766543 477776554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.31 E-value=0.0016 Score=51.84 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=52.8
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCC-CC----------ccHHHHHHHHhHhcCCHHHHHHHHHhc----------CCC---
Q 007329 508 ACARIGALMCGKEIHAHALRIGVA-FD----------GFLPNALLDMYVRCGRMKPAWNQFNSN----------ERD--- 563 (608)
Q Consensus 508 ~~~~~~~~~~a~~~~~~~~~~~~~-p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~--- 563 (608)
.+...|++++|++.|+++++.... |+ ...|+.+..+|.+.|++++|.+.+++. .++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344556666666666655543221 11 234556677777777777777666654 111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007329 564 --VSAWNILLTGYAERGQGALAEEFFRKMIDS 593 (608)
Q Consensus 564 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 593 (608)
...|..+..+|...|++++|.+.|++.++.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 225667778888888888888888887653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.06 E-value=0.00063 Score=53.39 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=72.4
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhc----------CCHHHHHHHHHhc----CCCHHHHHHHHHHH
Q 007329 509 CARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRC----------GRMKPAWNQFNSN----ERDVSAWNILLTGY 574 (608)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~----~~~~~~~~~l~~~~ 574 (608)
|-+.+.+++|.+.++.+.+..+. +...+..++.+|... +.+++|.+.|+++ +.+..+|..+..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 44567799999999999998876 778888888888744 5568899999888 55788999999998
Q ss_pred HhcCC-----------HHHHHHHHHHHHHcCCCCCch
Q 007329 575 AERGQ-----------GALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 575 ~~~g~-----------~~~A~~~~~~m~~~g~~p~~~ 600 (608)
...|+ +++|.+.|++.++. .|+..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~ 120 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNT 120 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHH
Confidence 77653 68899999999985 78766
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.04 E-value=0.0016 Score=51.88 Aligned_cols=89 Identities=16% Similarity=-0.008 Sum_probs=64.4
Q ss_pred HHHHHhCCCchHHHHHHHHhH--hCCCCC----------HHHHHHHHHHHhccCcHHHHHHHHHHHHHhC-----CCCC-
Q 007329 472 ILGLRLNNRSFEALIFFRKMM--LNLKPN----------SVTLVSILSACARIGALMCGKEIHAHALRIG-----VAFD- 533 (608)
Q Consensus 472 ~~~~~~~~~~~~A~~~~~~m~--~~~~p~----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~p~- 533 (608)
...+.+.|++++|++.|++.+ ....|+ ...|+.+..++...|++++|.+.+++.++.. ..++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 344556778888888888877 222221 3568888889999999999999888877531 1111
Q ss_pred ----ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 534 ----GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 534 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
...+..++.+|...|++++|.+.|+++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A 126 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKV 126 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 224667889999999999999999886
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.82 E-value=0.0021 Score=56.04 Aligned_cols=122 Identities=10% Similarity=-0.024 Sum_probs=84.8
Q ss_pred HHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHHHHhhhcCChh
Q 007329 68 NELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFLSMFVKFGDLG 147 (608)
Q Consensus 68 ~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (608)
+...+.|++++|+..+++.++..+ -|...+..+...++..|++++|...++...+..+.. ...+..+...+...+..+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-LPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhccccH
Confidence 345678999999999999988553 377889999999999999999999999999887642 333444444444444444
Q ss_pred hHHHHHccc-C--CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 007329 148 HAWYVFGKM-C--DR-DLFSWNVLIGGYAKAGFFDEALSLYQRMFWVG 191 (608)
Q Consensus 148 ~A~~~~~~~-~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 191 (608)
++..-...- . +| +...+......+...|+.++|.+++++..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 433322221 1 12 12233444566778899999999999988754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0046 Score=44.00 Aligned_cols=57 Identities=12% Similarity=-0.077 Sum_probs=28.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCC-----CC-ccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 504 SILSACARIGALMCGKEIHAHALRIGVA-----FD-GFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 504 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
.+...+.+.|++++|...++++.+.... ++ ..++..|..+|.+.|++++|.+.++++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a 72 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence 4455555566666666666555433111 01 223444555555555555555555554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.012 Score=41.72 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=30.8
Q ss_pred HHHHhHhcCCHHHHHHHHHhc----C------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 540 LLDMYVRCGRMKPAWNQFNSN----E------RD-VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 540 l~~~~~~~g~~~~A~~~~~~~----~------~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
++..+.+.|++++|...|+++ + ++ ..+++.|..+|.+.|++++|++.++++++. .|++.
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--~P~~~ 80 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ 80 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--CcCCH
Confidence 455555555555555555544 0 01 334555555555555555555555555553 45544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.95 E-value=0.079 Score=40.01 Aligned_cols=109 Identities=14% Similarity=-0.024 Sum_probs=77.1
Q ss_pred CchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHh----cCCHHHHHH
Q 007329 480 RSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVAFDGFLPNALLDMYVR----CGRMKPAWN 555 (608)
Q Consensus 480 ~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~ 555 (608)
++++|+++|++..+.-.+.. ...| +.....+.++|.+++++..+.| ++.....|...|.. ..+.++|.+
T Consensus 8 d~~~A~~~~~kaa~~g~~~a--~~~l--~~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~ 80 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMFG--CLSL--VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--HHHH--HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhh--hhhh--ccccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHH
Confidence 56778888888762222222 2222 2344567889999999888876 44555566666654 457899999
Q ss_pred HHHhc--CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 007329 556 QFNSN--ERDVSAWNILLTGYAE----RGQGALAEEFFRKMIDSKG 595 (608)
Q Consensus 556 ~~~~~--~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 595 (608)
.|++. .-++.....|...|.. ..+.++|.++|++..+.|.
T Consensus 81 ~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 81 YYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99998 6677777778777765 4689999999999988754
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.52 E-value=0.19 Score=36.33 Aligned_cols=141 Identities=11% Similarity=-0.006 Sum_probs=89.3
Q ss_pred HHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 007329 374 YEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKA 453 (608)
Q Consensus 374 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 453 (608)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+. .| ..+++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 34466677777777776654 25556666665555555555555555543321 11 1234444444
Q ss_pred HHHHccCCCCCcccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 007329 454 LEVFHQIPDKNVISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGVA 531 (608)
Q Consensus 454 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (608)
...+-.+-. +..-++..++.+.++|+-+.-.++++.+...-+|++.....+..||.+.|+..++.+++.++-+.|.+
T Consensus 76 v~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444433322 22234455677788888888888888877677788888888889999999999999999888888765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.33 E-value=0.3 Score=35.24 Aligned_cols=141 Identities=11% Similarity=-0.023 Sum_probs=81.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCChhHHHHHHHHHhhcCChhhHHHHHHHHHHhCCCCCcccchHHHHHHHhcCChHHH
Q 007329 273 YFENGEYMKGLMLFIMMREVLVDPDFMTLSSVISASELVGDEKLGREVHGYVIKMGFSDDVSVCNPLIKMYLSFGNREEG 352 (608)
Q Consensus 273 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 352 (608)
+.-.|..++..+++.+.... .+..-|+-+|--....-+-+...+.++.+ |-..|.. .++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~I---G~~FDls----------~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDLD----------KCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCGG----------GCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHH---hhhcCch----------hhhcHHHH
Confidence 34456666666666666542 24445555554444444444444443332 2122211 22233333
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHcCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC
Q 007329 353 EKVFSRMESKDVVSWTTMISCYEGSVLPDKAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLI 431 (608)
Q Consensus 353 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (608)
...+-.+.. +....+..++...++|+-++-.+++..+.+.+ +|++.....+..+|-+.|+..++.+++.++-+.|++
T Consensus 76 v~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 76 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333322221 22334455667788888888888888877644 778888888888888999988888888888887754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=1.5 Score=40.75 Aligned_cols=197 Identities=9% Similarity=-0.119 Sum_probs=114.5
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHhHhcCCHHHH
Q 007329 378 VLPDKAVETYQMMEAEGSMPDEITIASV----LSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLIDMYSKCKCIDKA 453 (608)
Q Consensus 378 ~~~~~a~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 453 (608)
.+.+.+..++......... +......+ .......+..+.+..++......+ .+.......+....+.+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 4667777777776654322 22222222 222234556677777776655444 2333334445555667888888
Q ss_pred HHHHccCCCCCc---ccHHHHHHHHHhCCCchHHHHHHHHhHhCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHHHHhCC
Q 007329 454 LEVFHQIPDKNV---ISWTSIILGLRLNNRSFEALIFFRKMMLNLKPNSVTLVSILSACARIGALMCGKEIHAHALRIGV 530 (608)
Q Consensus 454 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 530 (608)
...+..+..... .-..=+..++...|+.++|...|..... .++ |..++.+-.-...+.-. ...+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~--~~~---fYG~LAa~~Lg~~~~~~--------~~~~ 371 (450)
T d1qsaa1 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--QRG---FYPMVAAQRIGEEYELK--------IDKA 371 (450)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCS---HHHHHHHHHTTCCCCCC--------CCCC
T ss_pred HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc--CCC---hHHHHHHHHcCCCCCCC--------cCCC
Confidence 888888864211 1123356778888888888888888762 233 43333322111111000 0000
Q ss_pred C-CCccHH-----HHHHHHhHhcCCHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007329 531 A-FDGFLP-----NALLDMYVRCGRMKPAWNQFNSN--ERDVSAWNILLTGYAERGQGALAEEFFRKM 590 (608)
Q Consensus 531 ~-p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 590 (608)
. +..... ..-+..+...|+...|...|..+ ..+......+.....+.|.++.|+....+.
T Consensus 372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 0 001111 12345677889999999988877 557777888888888999999999877665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=93.61 E-value=0.59 Score=34.82 Aligned_cols=46 Identities=4% Similarity=0.092 Sum_probs=24.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHHHHhC
Q 007329 176 FFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHVIRFG 227 (608)
Q Consensus 176 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 227 (608)
++++|+++|++..+.+ +...+..+. .....+.++|.++++...+.|
T Consensus 8 d~~~A~~~~~kaa~~g----~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g 53 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN----EMFGCLSLV--SNSQINKQKLFQYLSKACELN 53 (133)
T ss_dssp HHHHHHHHHHHHHHTT----CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC----Chhhhhhhc--cccccCHHHHHHHHhhhhccc
Confidence 4566777777766554 122222222 233445666666666666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=0.71 Score=33.52 Aligned_cols=60 Identities=7% Similarity=0.080 Sum_probs=36.3
Q ss_pred HHHHHhHhc---CCHHHHHHHHHhc---CC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 007329 539 ALLDMYVRC---GRMKPAWNQFNSN---ER-D-VSAWNILLTGYAERGQGALAEEFFRKMIDSKGNWRKL 600 (608)
Q Consensus 539 ~l~~~~~~~---g~~~~A~~~~~~~---~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 600 (608)
.+..++.+. +++++++.+++++ .| + ...+..|.-+|.+.|++++|.+.++++++. .|++.
T Consensus 40 ~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~ 107 (124)
T d2pqrb1 40 NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 107 (124)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcH
Confidence 344445443 3345666666666 33 2 245566666777777777777777777764 66665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.69 E-value=1 Score=32.62 Aligned_cols=64 Identities=8% Similarity=-0.123 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHhCCCCCccHHHHHHHHhHhcCCHHHHHHHHHhc
Q 007329 497 PNSVTLVSILSACARI---GALMCGKEIHAHALRIGVAFDGFLPNALLDMYVRCGRMKPAWNQFNSN 560 (608)
Q Consensus 497 p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 560 (608)
+...|--...+++++. .+.+++..+++.+.+.++.-....+-.|.-+|.+.|++++|.+.++++
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~ 99 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455544555555544 455678888888776543312244456777788888888888888877
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.50 E-value=12 Score=34.25 Aligned_cols=230 Identities=11% Similarity=0.028 Sum_probs=125.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcc-hhHHhHHHHHhhhc
Q 007329 65 SRLNELCLNGSLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLS-VRLGNAFLSMFVKF 143 (608)
Q Consensus 65 ~ll~~~~~~~~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 143 (608)
..+....++|+..++..+...+... | -..|...-..-...++... .++..-+.+..-.|- ...-...+..+.+.
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~-~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~ 85 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPA-VTVTNFVRANPTLPPARTLQSRFVNELARR 85 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCH-HHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCH-HHHHHHHHHCCCChhHHHHHHHHHHHHHhc
Confidence 4456678899999988888877432 2 2233333222222222221 223333333322222 22334456677888
Q ss_pred CChhhHHHHHcccCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCcchHHHHHHHhcCCCChhhHHHHHHHH
Q 007329 144 GDLGHAWYVFGKMCDRDLFSWNVLIGGYAKAGFFDEALSLYQRMFWVGGVKPDVYTFPCVLRTCGGVPDLKRGKEVHVHV 223 (608)
Q Consensus 144 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 223 (608)
++++.....+..-+ .+...-.....+....|+.+.|.+.+...-..|...|+ ....++..+
T Consensus 86 ~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------~c~~l~~~~ 146 (450)
T d1qsaa1 86 EDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------ACDKLFSVW 146 (450)
T ss_dssp TCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------HHHHHHHHH
T ss_pred cCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------HHHHHHHHH
Confidence 89888777665432 23443445677788899999999988887766633333 223344545
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHccCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhHHHH
Q 007329 224 IRFGYEADVDVVNALITMYVKCGDLVRARLVFDGMPKRDRISWNAMISGYFENGEYMKGLMLFIMMREVLVDPDFMTLSS 303 (608)
Q Consensus 224 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 303 (608)
.+.| ..+...+-.-+......|+...|..+...+...........+........ +.... .. ..++......
T Consensus 147 ~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~---~~~~~---~~--~~~~~~~~~~ 217 (450)
T d1qsaa1 147 RASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFA---RT--TGATDFTRQM 217 (450)
T ss_dssp HHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHH---HH--SCCCHHHHHH
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHh---HHHHH---hc--CCCChhhhHH
Confidence 5544 33444444455566778999999999998876655555666555433222 22211 11 1223333333
Q ss_pred HHHHHhh--cCChhhHHHHHHHHHHh
Q 007329 304 VISASEL--VGDEKLGREVHGYVIKM 327 (608)
Q Consensus 304 ll~~~~~--~~~~~~a~~~~~~~~~~ 327 (608)
+..++.+ ..+.+.+..++......
T Consensus 218 ~~~~l~rla~~d~~~a~~~l~~~~~~ 243 (450)
T d1qsaa1 218 AAVAFASVARQDAENARLMIPSLAQA 243 (450)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhc
Confidence 3333332 24566666666665544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.18 E-value=3.4 Score=28.09 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 007329 382 KAVETYQMMEAEGSMPDEITIASVLSACACLGNLDLGIKLHQLAMRTGLISYIIIANTLID 442 (608)
Q Consensus 382 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 442 (608)
++.+-++.+....+.|++....+.+++|-+.+++..|.++++-+...- ..+..+|..+++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 556667777777888999999999999999999999999998777432 234556666553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.78 E-value=2.9 Score=28.39 Aligned_cols=62 Identities=8% Similarity=0.139 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHhhcCCCCChhhHHHHHHHhhccCCchhhhHHHHHHHHhcCCcchhHHhHHH
Q 007329 75 SLEQALKYLDSMQELNICVDEDALVNLVRLCEWKRGYDEGLYLHSVVSKTMSHLSVRLGNAFL 137 (608)
Q Consensus 75 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 137 (608)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++++-+....- .+...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence 5566777788888888889999999999999999999999999888765432 2344555544
|