Citrus Sinensis ID: 007334
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 607 | 2.2.26 [Sep-21-2011] | |||||||
| A7HYV8 | 473 | GTPase Der OS=Parvibaculu | yes | no | 0.721 | 0.926 | 0.404 | 2e-85 | |
| Q2W7M7 | 464 | GTPase Der OS=Magnetospir | yes | no | 0.711 | 0.931 | 0.414 | 7e-83 | |
| A5EI59 | 456 | GTPase Der OS=Bradyrhizob | yes | no | 0.698 | 0.929 | 0.408 | 2e-82 | |
| Q1QMP4 | 460 | GTPase Der OS=Nitrobacter | yes | no | 0.708 | 0.934 | 0.414 | 6e-81 | |
| A8LHW1 | 490 | GTPase Der OS=Dinoroseoba | yes | no | 0.721 | 0.893 | 0.394 | 1e-79 | |
| Q1GHZ2 | 492 | GTPase Der OS=Ruegeria sp | yes | no | 0.757 | 0.934 | 0.367 | 5e-78 | |
| Q89MZ0 | 460 | GTPase Der OS=Bradyrhizob | yes | no | 0.708 | 0.934 | 0.395 | 7e-78 | |
| A4YUE1 | 456 | GTPase Der OS=Bradyrhizob | yes | no | 0.721 | 0.960 | 0.396 | 8e-78 | |
| B3Q9V3 | 459 | GTPase Der OS=Rhodopseudo | yes | no | 0.706 | 0.934 | 0.399 | 1e-77 | |
| Q6N586 | 459 | GTPase Der OS=Rhodopseudo | yes | no | 0.706 | 0.934 | 0.399 | 1e-77 |
| >sp|A7HYV8|DER_PARL1 GTPase Der OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=der PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 191/472 (40%), Positives = 282/472 (59%), Gaps = 34/472 (7%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V I+GRPNVGKS LFNRL+ ++ ALV +TP VTRD REG A+LGDL F ++D+AGLE
Sbjct: 5 VAIVGRPNVGKSTLFNRLVGKKLALVDDTP--GVTRDRREGEARLGDLSFTIIDTAGLE- 61
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
EA +G++ R T +A + +ID R+G+ PLD + LRK + I+A N
Sbjct: 62 EAATGTLEARMRIGTERAIADADLCLLLIDARAGVTPLDKSFSQILRKSPTPV--ILAAN 119
Query: 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE----DYMLRV 298
KCE G + E+ LG G P+ +SAE G G+ +LY+AL + D +
Sbjct: 120 KCEGGAGKAGRM-----EAYELGLGAPLPLSAEHGEGLGDLYDALAQFAKGLEADDAGQA 174
Query: 299 LNDSCT--QNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 356
+ D+ Q+ + D +P + + + PL++AI+GRPNVGKSTL+N LL EDR+L GPEA
Sbjct: 175 VEDALAEEQDADAGFDPDAPYEPDLEAPLRVAIIGRPNVGKSTLVNQLLGEDRMLTGPEA 234
Query: 357 GLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDA 415
G+TRDS+ + +E++GR V L DTAG +R + + LSV + + + A VV ++LDA
Sbjct: 235 GITRDSIGIEWEWRGRRVKLWDTAGMRRRARVTEKLEKLSVADTLRAVRFAEVVVILLDA 294
Query: 416 EE---------VRAVE-EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465
+ VE EGRGL+++VNK D+++ Q V + +E++ ++PQ+
Sbjct: 295 TQPFERQDLHIADLVEQEGRGLLIVVNKWDMVAEPQE------VLRVLKEELERLLPQIR 348
Query: 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-K 524
G+P+V SAL GRG +M + + W R+PT+RLNRW+++ + RH +P
Sbjct: 349 GVPIVTLSALTGRGTDKLMPAIERVHTFWNARVPTARLNRWMQEAVSRHQPPAAHGRPVN 408
Query: 525 IKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
+KY +QVK+RPPTF F S + + R+L L+E FDL G+PIR+ R
Sbjct: 409 LKYISQVKSRPPTFAVFSSRADDVPTSYRRYLVNGLRETFDLPGVPIRLFMR 460
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881) |
| >sp|Q2W7M7|DER_MAGSA GTPase Der OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=der PE=3 SV=1 | Back alignment and function description |
|---|
Score = 308 bits (790), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 197/475 (41%), Positives = 275/475 (57%), Gaps = 43/475 (9%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
TV IIGRPNVGKS LFNRL+ +R A+V++ P VTRD REG A L + F+V+D+AG E
Sbjct: 4 TVAIIGRPNVGKSTLFNRLVGKRLAIVHDLPG--VTRDRREGRASLLGMEFQVVDTAGFE 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
+ SI R T +A+ A+ +ID R+G+ PLD LR+ + I+
Sbjct: 62 DDGGD-SIEARMRHQTDMAVAEADVALLLIDSRAGVTPLDRHFADHLRRLPTPV--ILVA 118
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLR---V 298
NKCE G ES LG G+P+A+SAE G GM EL+EALR D+ ++ +
Sbjct: 119 NKCEGKAGAPGLY-----ESYGLGMGEPVAVSAEHGEGMYELFEALR----DHAIKAGAL 169
Query: 299 LNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL 358
+ + E D ++ PL +AIVGRPNVGKSTL N LL +DR+L GPEAGL
Sbjct: 170 TPEGDDPEPEEPAEGEDGEPDPTR-PLTMAIVGRPNVGKSTLGNQLLGQDRLLTGPEAGL 228
Query: 359 TRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEE 417
TRD++ V +E++GR + LVDTAG ++ + LSV + + + + VV LV+DA
Sbjct: 229 TRDAIAVEWEHRGRRMKLVDTAGLRKKAQIYDAIEKLSVGNTIETIRMSEVVVLVMDAAA 288
Query: 418 V----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467
+ VEEGR LV+ +NK D++ Q + KR+K+ ++T +PQ G+
Sbjct: 289 ILDKQDLTIARLVVEEGRALVLAINKWDVVDDPQTA--LKRLKD----RLETSLPQARGV 342
Query: 468 PVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP---- 523
V SAL GRG +M V+DT+ KW R+PT++LNRWL ++ RH A P
Sbjct: 343 ATVTLSALTGRGIEKLMDAVLDTWTKWNRRIPTAQLNRWLEDMIERHP---PPALPGGRR 399
Query: 524 -KIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRS 577
KI+Y TQ KARPPTFV F + + L ++ R+L L+E FDL G+P+R+ R
Sbjct: 400 YKIRYMTQAKARPPTFVLFATRPEQLPESYSRYLVNGLREAFDLPGVPVRLYVRG 454
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108) |
| >sp|A5EI59|DER_BRASB GTPase Der OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=der PE=3 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 272/470 (57%), Gaps = 46/470 (9%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ IIGRPNVGKS LFNRL+ ++ ALV + P VTRD REG AKLGDL+F ++D+AGL+
Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQKLALVDDMPG--VTRDRREGEAKLGDLQFTIIDTAGLD 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
GS+ R T +A F+ID R+GL P D + R+ KP++ +
Sbjct: 62 G-GPKGSLTARMQEQTETAIALADALFFVIDARAGLTPADRTFADFARRAD---KPVLLL 117
Query: 242 -NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLN 300
NK E H G++ ES LG GDPI ISAE G GM ELY+ALR V +
Sbjct: 118 ANKSEGKHGELGAM-----ESYALGLGDPIQISAEHGEGMGELYDALRGLVPE------- 165
Query: 301 DSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360
T++ + T +++ + P+++AIVGRPN GKSTL+N LL E+R+L PEAG TR
Sbjct: 166 ---TEDEVDEHEET--DEERAARPIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTR 220
Query: 361 DSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDA---- 415
DS+ V EY+GR + DTAG +R + E+ LSV + + + A VV L++DA
Sbjct: 221 DSIAVEIEYKGRGFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRF 280
Query: 416 --EEVRAVE----EGRGLVVIVNKMDLLSGR--QNSALYKRVKEAVPQEIQTVIPQVTGI 467
+++R + EGR LV+ VNK DL+ + Q SAL ++ +PQV+G+
Sbjct: 281 EEQDLRIADLIEREGRALVIAVNKWDLMESKPGQISALR--------HDVDHWLPQVSGV 332
Query: 468 PVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIK 526
P+V S L G G +M ++++Y W R+PT+ LNRW + + + S + K+
Sbjct: 333 PIVAVSGLMGEGIDRLMQAIVESYAVWNRRVPTAALNRWFEEAIANNPPPAVSGRRLKLN 392
Query: 527 YFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
Y TQ KARPP+FV F S + + LR+L S++E F+L G P+RIT R
Sbjct: 393 YITQTKARPPSFVLFCSRADAIPQSYLRYLINSMRETFELPGTPVRITLR 442
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000) |
| >sp|Q1QMP4|DER_NITHX GTPase Der OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=der PE=3 SV=1 | Back alignment and function description |
|---|
Score = 302 bits (773), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 194/468 (41%), Positives = 269/468 (57%), Gaps = 38/468 (8%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ IIGRPNVGKS LFNRL+ ++ ALV + P VTRD REG A+LGDL F V+D+AGL+
Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQKLALVDDKP--GVTRDRREGQARLGDLDFTVIDTAGLD 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
E GS+ R T +A +F+ D R+GL P D + R+ KP+V +
Sbjct: 62 -EGPRGSLTARMQEQTETAIAAADALMFVFDARAGLTPTDRSFADFARRAN---KPVVLV 117
Query: 242 -NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLN 300
NK E H G+L ES LG GDP+ +SAE G GM++LY+ALR V+
Sbjct: 118 ANKSEGRHGEAGAL-----ESYALGLGDPVGVSAEHGEGMSDLYDALRG--------VMP 164
Query: 301 DSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360
+ + D +D S+ P+++AIVGRPN GKSTL+N LL E+R+L PEAG TR
Sbjct: 165 EPTEEAEEFDDDDIIESEDISQRPIRVAIVGRPNAGKSTLINYLLGEERLLTSPEAGTTR 224
Query: 361 DSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDA---- 415
DS+ V +QGR + DTAG +R + E+ LSV + + A VV L++DA
Sbjct: 225 DSISVELNWQGRDFRIFDTAGLRRRSRIEEKLEKLSVADTLRAARFAEVVVLMMDAQNRF 284
Query: 416 --EEVRAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469
+++R + EGR LV+ VNK DL+ GRQ+S + A+ + ++PQV G+P+
Sbjct: 285 EEQDLRIADLIEREGRALVIAVNKWDLM-GRQSSLI-----AALRTDADHLLPQVKGMPI 338
Query: 470 VFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIKYF 528
V S L G G +M + D Y W R+PT+ LNRW + + + S + K+ Y
Sbjct: 339 VAVSGLMGEGVDRLMTAIQDAYAIWNRRVPTAALNRWFEQAVDANPPPAVSGRRLKLNYV 398
Query: 529 TQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
TQ KARPP+F+ F S + ++ LR+L SL+ FDL G PIRIT R
Sbjct: 399 TQAKARPPSFIVFCSRADAVPESYLRYLVNSLRGFFDLPGTPIRITLR 446
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097) |
| >sp|A8LHW1|DER_DINSH GTPase Der OS=Dinoroseobacter shibae (strain DFL 12) GN=der PE=3 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 188/476 (39%), Positives = 274/476 (57%), Gaps = 38/476 (7%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ I+GRPNVGKS LFNRL+ +R ALV + P VTRD+REG A+LGDLRF V+D+AGLE
Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQP--GVTRDLREGAARLGDLRFTVIDTAGLE 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
EAT S+ R +T ++ +F+ID R G+ P D LR+ + ++
Sbjct: 62 -EATDDSLQGRMRRLTERAVSMADACLFLIDARVGVTPTDEVFADILRRSNAHV--LLGA 118
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLND 301
NK E G + AG E+ LG G+P+A+SAE G GM EL AL P ++ + +
Sbjct: 119 NKAE----GRAAEAGLI-EAYALGLGEPLALSAEHGEGMAELTGALMPLIDAF--EETEN 171
Query: 302 SCTQNNSSTQDVTSPEDDESKL--------PLQLAIVGRPNVGKSTLLNALLQEDRVLVG 353
+ T++ T P+ +E + PLQ+A+VGRPN GKSTL+N LL EDR+L G
Sbjct: 172 AETEDAPETDVALDPDAEEETVVRVPTKAKPLQVAVVGRPNAGKSTLINQLLGEDRLLTG 231
Query: 354 PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALV 412
PEAG+TRD++ + ++ G V + DTAG ++ K ++ LSV + + A VV ++
Sbjct: 232 PEAGITRDAISLAMDWDGLPVRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVL 291
Query: 413 LDA------EEVR----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP 462
LDA +++R A EGR +V+ VNK D+ +Q K +KEA + ++P
Sbjct: 292 LDAGIPFEQQDLRIADLAEREGRAVVIAVNKWDMEDDKQGK--LKELKEA----FERLLP 345
Query: 463 QVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQ 522
Q+ G P+V SA GRG + V+ ++ W R+PT+ LNRWL ++ H +
Sbjct: 346 QLRGAPLVTVSAKTGRGMDRLRDAVLRAHEVWNRRVPTAALNRWLGAMVEAHPPPAPGGR 405
Query: 523 P-KIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRS 577
K++Y TQ K RPP FV S + + ++ R+L L+EDFD+ G PIR+T RS
Sbjct: 406 RIKLRYMTQAKTRPPGFVVMCSYPEKIPESYTRYLVNGLREDFDMPGTPIRLTMRS 461
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Dinoroseobacter shibae (strain DFL 12) (taxid: 398580) |
| >sp|Q1GHZ2|DER_RUEST GTPase Der OS=Ruegeria sp. (strain TM1040) GN=der PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 188/512 (36%), Positives = 280/512 (54%), Gaps = 52/512 (10%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ I+GRPNVGKS LFNRL+ ++ ALV + P VTRD+REG A+LGDLRF V+DSAGLE
Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKKLALVDDQP--GVTRDLREGEARLGDLRFTVIDSAGLE 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
+AT S+ R +T + +F+ID R+G+ P D + LRK + + I+A
Sbjct: 62 -DATDNSLEGRMRRLTERAVEMADVCLFLIDARAGVTPTDEVFAEILRKKSAHV--ILAA 118
Query: 242 NKCESLHNGTGSLAGAAA-ESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLN 300
NK E GS A A E+ LG G+PI +S E G G+ +LY L P E +
Sbjct: 119 NKSE------GSAADAGVLEAYGLGLGEPIRMSGEHGEGLNDLYSELLPVSEKF------ 166
Query: 301 DSCTQNNSSTQDVTSPEDDESKL----------------PLQLAIVGRPNVGKSTLLNAL 344
+ + + DV ED+ PLQ+A+VGRPN GKSTL+N +
Sbjct: 167 EKLAEETAPETDVVLDEDENEAFNAGEEIAATPVPTLEKPLQVAVVGRPNAGKSTLINKI 226
Query: 345 LQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNL 403
L EDR+L GPEAG+TRD++ + ++ G + + DTAG ++ K ++ LSV + +
Sbjct: 227 LGEDRLLTGPEAGITRDAISLKIDWSGTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAV 286
Query: 404 MRAHVVALVLDA------EEVR----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAV 453
A VV ++LDA +++R A EGR +V+ VNK D+ +Q K +KEA
Sbjct: 287 KFAEVVVVLLDAAIPFEQQDLRIADLAEREGRAVVIAVNKWDIEDEKQEK--LKALKEA- 343
Query: 454 PQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGR 513
+ ++PQ+ G P+V SA GRG + ++ + W R+PT+ LNRWL ++ +
Sbjct: 344 ---FERLLPQLRGAPLVTVSAKTGRGLDRLHAAIMKAHDVWNRRVPTAALNRWLAGMLEQ 400
Query: 514 H-SWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIR 572
H Q + K++Y TQ K RPP FV S + + R+L L+EDFD+ G PIR
Sbjct: 401 HPPPAPQGKRIKLRYMTQAKTRPPGFVVMCSHPDKMPASYNRYLVNGLREDFDMPGTPIR 460
Query: 573 ITQRSVPRKCGSSSSRQNTGQKVGRTFSDKRT 604
+T R K +++T ++ + +++
Sbjct: 461 LTLRGQGDKNPYKGKKKSTPSRLRKHLEGRKS 492
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Silicibacter sp. (strain TM1040) (taxid: 292414) |
| >sp|Q89MZ0|DER_BRAJA GTPase Der OS=Bradyrhizobium japonicum (strain USDA 110) GN=der PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 185/468 (39%), Positives = 264/468 (56%), Gaps = 38/468 (8%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ IIGRPNVGKS LFNRL+ ++ ALV + P VTRD REG A+LGDL F ++D+AGL+
Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQKLALVDDLP--GVTRDRREGEARLGDLEFTIIDTAGLD 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
E GS+ R T +A+ F++D R GL P D + R+ KP++ +
Sbjct: 62 -EGAKGSLTARMQEQTEAAIAQADALFFVVDARIGLTPTDRAFADFARRAN---KPVLLV 117
Query: 242 -NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLN 300
NK E H G++ E+ LG GDPI ISAE G GM ELY+AL +++
Sbjct: 118 ANKSEGKHGDAGAM-----EAFALGLGDPIQISAEHGEGMGELYDAL--------AKLMP 164
Query: 301 DSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360
+ ++ S E+ ++ P+++AIVGRPN GKSTL+N LL E+R+L PEAG TR
Sbjct: 165 EPVEEDEDEDDAPLSEEEAATR-PIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTR 223
Query: 361 DSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDA---- 415
DS+ V ++GR + DTAG +R + E+ LSV + + + A VV L++D
Sbjct: 224 DSIAVEINWKGREFRVFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDTQNRF 283
Query: 416 --EEVRAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469
+++R + EGR LV+ NK DL+ + A+ ++A +PQV G+P+
Sbjct: 284 EEQDLRIADLVEREGRALVLAANKWDLMETKGGGAISGLRRDA-----DHWLPQVKGVPI 338
Query: 470 VFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIKYF 528
V S L G G +M + D Y W R+ TS LNRW + + + S + K+ Y
Sbjct: 339 VAVSGLMGEGIDRLMQAIQDAYAVWNRRVSTSALNRWFEQAVQANPPPAVSGRRLKLNYI 398
Query: 529 TQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
TQ KARPP+FV F S + + LR+LT S++E FDL G P+RIT R
Sbjct: 399 TQTKARPPSFVLFCSRADAVPQSYLRYLTNSMREAFDLPGTPVRITLR 446
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911) |
| >sp|A4YUE1|DER_BRASO GTPase Der OS=Bradyrhizobium sp. (strain ORS278) GN=der PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 192/484 (39%), Positives = 262/484 (54%), Gaps = 46/484 (9%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ IIGRPNVGKS LFNRL+ ++ ALV + P VTRD REG AKL DL F ++D+AGL+
Sbjct: 4 TIAIIGRPNVGKSTLFNRLVGQKLALVDDMPG--VTRDRREGEAKLHDLHFTIIDTAGLD 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
E GS+ R T +A F+ID R GL P D + R+ KP++ +
Sbjct: 62 -EGPKGSLTARMQEQTETAIALADALFFVIDARVGLTPADRAFADFARRAD---KPVLLL 117
Query: 242 -NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLN 300
NK E H G++ ES LG GDPI ISAE G GM ELY+AL V
Sbjct: 118 ANKSEGKHGELGAM-----ESYALGLGDPIQISAEHGEGMGELYDALSKIVPPSDDEDDE 172
Query: 301 DSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360
T +++ P+++AIVGRPN GKSTL+N LL E+R+L PEAG TR
Sbjct: 173 REETDEERASR------------PIRVAIVGRPNAGKSTLINHLLGEERLLTSPEAGTTR 220
Query: 361 DSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDA---- 415
DS+ V E++GR + DTAG +R + E+ LSV + + + A VV L+LDA
Sbjct: 221 DSIAVEVEWKGRGFRIFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMLDAQNRF 280
Query: 416 --EEVRAVE----EGRGLVVIVNKMDLLSGR--QNSALYKRVKEAVPQEIQTVIPQVTGI 467
+++R + EGR LV+ VNK DL+ + Q SAL + + +PQ+TG
Sbjct: 281 EEQDLRIADLVEREGRALVLAVNKWDLMEAQPGQISALRR--------DADHWLPQITGA 332
Query: 468 PVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIK 526
P+V S L G G +M +++ Y W R+PT+ LNRW + + S + K+
Sbjct: 333 PIVAVSGLMGEGIDRLMQAIVEAYAVWNRRVPTAALNRWFEGAIANNPPPAVSGRRLKLN 392
Query: 527 YFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKCGSSS 586
Y TQ KARPP+FV F S + + LR+L S++E F+L G P+RIT R
Sbjct: 393 YITQTKARPPSFVLFCSRADAIPQSYLRYLVNSMRETFELPGTPVRITLREKANPFAHKR 452
Query: 587 SRQN 590
R N
Sbjct: 453 KRPN 456
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Bradyrhizobium sp. (strain ORS278) (taxid: 114615) |
| >sp|B3Q9V3|DER_RHOPT GTPase Der OS=Rhodopseudomonas palustris (strain TIE-1) GN=der PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 187/468 (39%), Positives = 265/468 (56%), Gaps = 39/468 (8%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ IIGRPNVGKS LFNRL+ ++ ALV + P VTRD REG +LGDL F ++D+AGL+
Sbjct: 4 TLAIIGRPNVGKSTLFNRLVGQKLALVDDAP--GVTRDRREGEGRLGDLNFTLIDTAGLD 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
E GS+ R T + +F+ D R+GL P D + R+ KP+V +
Sbjct: 62 -EGPKGSLTARMQEQTETAIELADALLFVFDARAGLTPNDRAFADFARRAN---KPVVLV 117
Query: 242 -NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLN 300
NK E G++ ES LG GDP+ ISAE G GM ELY+ALRP +L
Sbjct: 118 ANKSEGKSGEIGAM-----ESYALGLGDPVQISAEHGEGMGELYDALRP-----LLPEPV 167
Query: 301 DSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360
+ + + Q E+ + P+++AIVGRPN GKST +N LL E+R+L PEAG TR
Sbjct: 168 EDEEDDEPADQS----EEAIATRPIRVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTR 223
Query: 361 DSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDA---- 415
DS+ V E++GR + DTAG +R + E+ LSV + + + A VV L++DA
Sbjct: 224 DSIAVEVEWKGRDFRVFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRF 283
Query: 416 --EEVRAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469
+++R + EGR LV+ VNK DL+ RQ + + +A +PQ+ G+P+
Sbjct: 284 EEQDLRIADLVEREGRALVIAVNKWDLIE-RQGGQIAQLRTDA-----DHWLPQIKGVPI 337
Query: 470 VFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIKYF 528
V TS + G G +M + D Y W R+PT+ LNRW + + ++ S + K+ Y
Sbjct: 338 VATSGMLGEGVDRLMQAIQDAYAVWNRRVPTAALNRWFEQAISQNPPPAVSGRRLKLNYV 397
Query: 529 TQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
TQ KARPP+FV F S + ++ LR+L SL+ FDL G P+RIT R
Sbjct: 398 TQTKARPPSFVVFCSRADAVPESYLRYLVNSLRGAFDLPGTPVRITLR 445
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Rhodopseudomonas palustris (strain TIE-1) (taxid: 395960) |
| >sp|Q6N586|DER_RHOPA GTPase Der OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=der PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 187/468 (39%), Positives = 265/468 (56%), Gaps = 39/468 (8%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ IIGRPNVGKS LFNRL+ ++ ALV + P VTRD REG +LGDL F ++D+AGL+
Sbjct: 4 TLAIIGRPNVGKSTLFNRLVGQKLALVDDAP--GVTRDRREGEGRLGDLNFTLIDTAGLD 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
E GS+ R T + +F+ D R+GL P D + R+ KP+V +
Sbjct: 62 -EGPKGSLTARMQEQTETAIELADALLFVFDARAGLTPNDRAFADFARRAN---KPVVLV 117
Query: 242 -NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLN 300
NK E G++ ES LG GDP+ ISAE G GM ELY+ALRP +L
Sbjct: 118 ANKSEGKSGEIGAM-----ESYALGLGDPVQISAEHGEGMGELYDALRP-----LLPEPV 167
Query: 301 DSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360
+ + + Q E+ + P+++AIVGRPN GKST +N LL E+R+L PEAG TR
Sbjct: 168 EDEEDDEPADQS----EEAIATRPIRVAIVGRPNAGKSTFINRLLGEERLLTSPEAGTTR 223
Query: 361 DSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDA---- 415
DS+ V E++GR + DTAG +R + E+ LSV + + + A VV L++DA
Sbjct: 224 DSIAVEVEWKGRDFRVFDTAGLRRRSRIEEKLEKLSVADALRAVRFAEVVVLMMDAQNRF 283
Query: 416 --EEVRAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469
+++R + EGR LV+ VNK DL+ RQ + + +A +PQ+ G+P+
Sbjct: 284 EEQDLRIADLVEREGRALVIAVNKWDLIE-RQGGQIAQLRTDA-----DHWLPQIKGVPI 337
Query: 470 VFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIKYF 528
V TS + G G +M + D Y W R+PT+ LNRW + + ++ S + K+ Y
Sbjct: 338 VATSGMLGEGVDRLMQAIQDAYAVWNRRVPTAALNRWFEQAISQNPPPAVSGRRLKLNYV 397
Query: 529 TQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
TQ KARPP+FV F S + ++ LR+L SL+ FDL G P+RIT R
Sbjct: 398 TQTKARPPSFVVFCSRADAVPESYLRYLVNSLRGAFDLPGTPVRITLR 445
|
GTPase that plays an essential role in the late steps of ribosome biogenesis. Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (taxid: 258594) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 607 | ||||||
| 224129530 | 560 | predicted protein [Populus trichocarpa] | 0.881 | 0.955 | 0.738 | 0.0 | |
| 255556681 | 635 | GTP-binding protein enga, putative [Rici | 0.991 | 0.948 | 0.669 | 0.0 | |
| 334188086 | 621 | GTP-binding protein [Arabidopsis thalian | 0.965 | 0.943 | 0.636 | 0.0 | |
| 356520141 | 552 | PREDICTED: GTPase Der-like [Glycine max] | 0.833 | 0.916 | 0.708 | 0.0 | |
| 359490241 | 742 | PREDICTED: GTPase Der-like [Vitis vinife | 0.853 | 0.698 | 0.727 | 0.0 | |
| 297801602 | 623 | GTP-binding family protein [Arabidopsis | 0.971 | 0.947 | 0.635 | 0.0 | |
| 242055911 | 604 | hypothetical protein SORBIDRAFT_03g00122 | 0.878 | 0.882 | 0.685 | 0.0 | |
| 449432950 | 626 | PREDICTED: GTPase Der-like [Cucumis sati | 0.886 | 0.859 | 0.667 | 0.0 | |
| 296084119 | 739 | unnamed protein product [Vitis vinifera] | 0.859 | 0.706 | 0.662 | 0.0 | |
| 414875662 | 616 | TPA: hypothetical protein ZEAMMB73_45666 | 0.863 | 0.850 | 0.691 | 0.0 |
| >gi|224129530|ref|XP_002328739.1| predicted protein [Populus trichocarpa] gi|222839037|gb|EEE77388.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/559 (73%), Positives = 460/559 (82%), Gaps = 24/559 (4%)
Query: 68 LPEVPRGFCGVVQNEALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIG 127
+PE+ G V + LE + G D KVK +YEKP+DFTKID NLLPTV+I+G
Sbjct: 1 MPELVSGSGEDVTSSDLEQLDFCSDDGGT--DKKVKVVYEKPIDFTKIDTNLLPTVIIVG 58
Query: 128 RPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSG 187
RPNVGKSAL+NRLIRRREALVYNTPDDHVTRDIREG+AKLGDLRFKVLDSAGLETEA SG
Sbjct: 59 RPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLGDLRFKVLDSAGLETEAASG 118
Query: 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247
SIL RT MTANVLA+TQFA+F+IDVR+GLHPLDL+VGKW RKHAP IKPIVAMNK ESL
Sbjct: 119 SILQRTTSMTANVLARTQFAVFLIDVRAGLHPLDLDVGKWFRKHAPGIKPIVAMNKSESL 178
Query: 248 HNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNN 307
+G GS++ AA E+ MLGFGDPIAISAETGLGM L++AL+P +EDYML+VLN++C Q+N
Sbjct: 179 CDGVGSISDAADEARMLGFGDPIAISAETGLGMAALHDALQPLIEDYMLQVLNNNCDQDN 238
Query: 308 S---STQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR 364
S D + E DESKLPLQLAI+GRPNVGKSTLLN LLQE+RVLVGPE GLTRDSVR
Sbjct: 239 GYGPSHVDDVAGEVDESKLPLQLAIIGRPNVGKSTLLNTLLQEERVLVGPEVGLTRDSVR 298
Query: 365 VHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----- 418
F+Y+GRT+YLVDTAGWLQR EKGP+SLSVMQSRKNLMRA VVALVLDAEEV
Sbjct: 299 TQFQYEGRTIYLVDTAGWLQRTGLEKGPSSLSVMQSRKNLMRAQVVALVLDAEEVVKARR 358
Query: 419 -----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467
RAVEEGRGLVVIVNKMDLL G++NS L+ +V EAVP EIQTVIPQ+TGI
Sbjct: 359 SMTHAEVVIARRAVEEGRGLVVIVNKMDLLKGKRNSTLFDKVMEAVPLEIQTVIPQITGI 418
Query: 468 PVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKY 527
PVVFTSALEGRGRIAVM QVIDTY+KWC RL TSRLNRWLRKVM RHSWKDQ+AQPKIKY
Sbjct: 419 PVVFTSALEGRGRIAVMRQVIDTYEKWCSRLSTSRLNRWLRKVMSRHSWKDQAAQPKIKY 478
Query: 528 FTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKCGSSSS 587
FTQVKARPPTFVAF SGK LS+ +LRFLTKSLKEDFDLGGIPIRI QRSVPRK G + S
Sbjct: 479 FTQVKARPPTFVAFTSGKTQLSETDLRFLTKSLKEDFDLGGIPIRIMQRSVPRKGGGNRS 538
Query: 588 RQ--NTGQKVGRTFSDKRT 604
+ + G+ R SDKRT
Sbjct: 539 KSTPSAGRMAERFLSDKRT 557
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556681|ref|XP_002519374.1| GTP-binding protein enga, putative [Ricinus communis] gi|223541441|gb|EEF42991.1| GTP-binding protein enga, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/636 (66%), Positives = 490/636 (77%), Gaps = 34/636 (5%)
Query: 1 MFHSWVRAVLARKSSLGFGLFGRSISS---STNPVNLCKPFNFTLNNYSHIRASAAGSLY 57
M HSWVR++L RK G + +S ++ ST N F F+ + RAS
Sbjct: 1 MSHSWVRSLLVRKRHYGSSILYKSTTAYSLSTEVNNFIPTFKFS-SGLLFNRASFMNDNR 59
Query: 58 QVGSSLK-CNLLP--EVPRGFCGVVQNEALE---DTHVEPEPDGVVEDHKVKPLYEKPVD 111
V + + C L ++ R FC + +NE E D + E D VV++ KV EK +D
Sbjct: 60 VVYTGWRFCQLRERWQLSRAFCSIHKNEMSELDSDDIICSELDSVVKEEKVSD--EKLID 117
Query: 112 FTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR 171
FTKID NLLPTV+IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR
Sbjct: 118 FTKIDSNLLPTVIIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR 177
Query: 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH 231
F+VLDSAGLETEATSGSIL RT MTANVLA+TQFAIF+IDVR+GLHPLD+EVGKWLRKH
Sbjct: 178 FRVLDSAGLETEATSGSILQRTTSMTANVLARTQFAIFLIDVRAGLHPLDVEVGKWLRKH 237
Query: 232 APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291
AP I PIVAMNK ESL +G GS+ AA E+ MLGFGDPIAISAETGLGMT LY++L P +
Sbjct: 238 APGINPIVAMNKSESLCDGAGSIEEAADEARMLGFGDPIAISAETGLGMTTLYDSLGPLL 297
Query: 292 EDYMLRVLNDSCTQ---NNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQED 348
DY L VL ++C Q N+++ D +S +++SKLP+QLAIVGRPNVGKSTLLN LLQE+
Sbjct: 298 VDYALNVLKNNCNQHSSNDATHYDSSSEVEEDSKLPMQLAIVGRPNVGKSTLLNTLLQEE 357
Query: 349 RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAH 407
RVLVGPE GLTRDS+R F++QGRT+YLVDTAGWL R +EKGP+SLS++QSRKNLMRAH
Sbjct: 358 RVLVGPEVGLTRDSIRSQFDFQGRTIYLVDTAGWLHRTGQEKGPSSLSIVQSRKNLMRAH 417
Query: 408 VVALVLDAEEV----------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKE 451
VVALVLDA E+ RAVEEGRGLVVIVNKMDLL G+QNS L+++V E
Sbjct: 418 VVALVLDAAEIAKARRSMTHAEVVIARRAVEEGRGLVVIVNKMDLLQGKQNSKLFEKVME 477
Query: 452 AVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVM 511
AVP EIQTVIPQV+GIPVVF SALEGRGR AV+ QVI TY+KWC RLPT+RLNRWL KVM
Sbjct: 478 AVPLEIQTVIPQVSGIPVVFISALEGRGRTAVLRQVIGTYEKWCSRLPTARLNRWLHKVM 537
Query: 512 GRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPI 571
RHSWKDQ+AQPKIKYFTQVKARPPTFVAF SGK LSD +LRFLTKSLKEDF+LGGIPI
Sbjct: 538 SRHSWKDQAAQPKIKYFTQVKARPPTFVAFTSGKTRLSDTDLRFLTKSLKEDFNLGGIPI 597
Query: 572 RITQRSVPRKCG--SSSSRQNTGQKVGRTFSDKRTV 605
RI QRSVP+K S S Q+TG+ R SDKR V
Sbjct: 598 RIMQRSVPKKSAGRGSKSGQSTGRMAERMLSDKRIV 633
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334188086|ref|NP_198812.3| GTP-binding protein [Arabidopsis thaliana] gi|332007113|gb|AED94496.1| GTP-binding protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/638 (63%), Positives = 480/638 (75%), Gaps = 52/638 (8%)
Query: 1 MFHSWVRAVLARKSSLGFGLFGRSISS----------STNPVNLCK-PFNFTLNNYSHIR 49
M S VRA+ ARK+ + R + S ++N N FN T+ + SH
Sbjct: 1 MSQSLVRAISARKNQFSLVFYYRCLYSKLLHSQDQIIASNCSNFSSLGFNSTVRHRSHQN 60
Query: 50 ASAAGSLYQVGSSLKCNL-LPEVPRGFCGVVQNEALEDTHVEPEPDGVVEDHKVKPLYEK 108
+ S+L +L L GF V +++ + D K K Y+K
Sbjct: 61 --------RFCSNLISDLNLVRSTNGFATVSDESNVDNGEK-------LVDKKPKIFYKK 105
Query: 109 PVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG 168
P+DFTKID NLLPTVM++GRPNVGKSAL+NRLIRRREALVYNTPDDHVTRDIREG+AKLG
Sbjct: 106 PIDFTKIDANLLPTVMLMGRPNVGKSALYNRLIRRREALVYNTPDDHVTRDIREGIAKLG 165
Query: 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWL 228
DLRF VLDSAG+ETE +SG+IL RT MTANVLA+TQFA+ +IDVR+GLHPLDLEVGKWL
Sbjct: 166 DLRFNVLDSAGIETEVSSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWL 225
Query: 229 RKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
RKHAPQIKPIV MNK ES+ GSL A+E+L LGFG+PIAISAETGLGMT LYE LR
Sbjct: 226 RKHAPQIKPIVVMNKSESI----GSLDEVASEALALGFGEPIAISAETGLGMTTLYEVLR 281
Query: 289 PSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQED 348
P +EDY + +LND +Q++ T + S E DESKLPLQLAIVG+PNVGKSTLLNALL+E+
Sbjct: 282 PLLEDYTVEMLNDIGSQDDVLTDENLSDEIDESKLPLQLAIVGKPNVGKSTLLNALLEEE 341
Query: 349 RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAH 407
RVLVGPEAGLTRD+VRV FE+QGRTVYLVDTAGWL+R E++KGPASLS+MQSRK+LMRAH
Sbjct: 342 RVLVGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRKSLMRAH 401
Query: 408 VVALVLDAEEV----------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKE 451
V+ALVLDAEE+ RAVEEGRGLVVIVNKMD L GR+NS +YK++KE
Sbjct: 402 VIALVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGRENSEMYKKIKE 461
Query: 452 AVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVM 511
AVP EIQTVIPQ+TGIPVVF SALEGRGR+ VM +V DTY++WC RL T RLNRWLRKVM
Sbjct: 462 AVPIEIQTVIPQITGIPVVFISALEGRGRMEVMKEVTDTYKRWCSRLSTGRLNRWLRKVM 521
Query: 512 GRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPI 571
RHSWKD ++QPKIK+FTQVKARPPTFVAF+SGK L ++++RFLT+SLKEDFDLGG PI
Sbjct: 522 SRHSWKDTASQPKIKFFTQVKARPPTFVAFVSGKTQLLESDIRFLTRSLKEDFDLGGTPI 581
Query: 572 RITQRSVPR----KCGSSSSRQNTGQKVGRTFSDKRTV 605
RI QR +PR G S ++ + V RT SDKRT+
Sbjct: 582 RIIQRVIPRAPPSGTGGGGSGNSSSRVVQRTTSDKRTL 619
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520141|ref|XP_003528723.1| PREDICTED: GTPase Der-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/539 (70%), Positives = 440/539 (81%), Gaps = 33/539 (6%)
Query: 100 HKVKPLYEK----------PVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVY 149
H + P+ E+ P+DFT+I I+ LPTV+I+GRPNVGKSALFNRLIRRREALVY
Sbjct: 11 HLIPPVTERGFSSLSVVTAPLDFTEIQISRLPTVVILGRPNVGKSALFNRLIRRREALVY 70
Query: 150 NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIF 209
NTPDDHVTRDIREGLAKL DLRF+VLDSAGLE EATS SIL RTA +TA+VLAK+ FA+F
Sbjct: 71 NTPDDHVTRDIREGLAKLADLRFRVLDSAGLEAEATSASILHRTASITAHVLAKSHFALF 130
Query: 210 MIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 269
+ D R+GLHPLDL+VGKWLRKHAPQIKPIVAMNK ESL + TGSLA AA E LGFGDP
Sbjct: 131 LTDARAGLHPLDLQVGKWLRKHAPQIKPIVAMNKSESLFDATGSLASAANEMCRLGFGDP 190
Query: 270 IAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNS--STQDVTSPEDDESKLPLQL 327
IAISAETGLGM +LY +L+P +EDYMLRV + + NS +D + + D+SKLPLQL
Sbjct: 191 IAISAETGLGMHDLYMSLKPLLEDYMLRVFTEEGARENSHNEVEDSSDLDVDKSKLPLQL 250
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDS+R FE+QGRT+YLVDTAGWLQR K
Sbjct: 251 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSIRTQFEFQGRTIYLVDTAGWLQRTK 310
Query: 388 -EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------------RAVEEGRGLVVI 430
EKG ASLS+MQSRK+L+RAH++ALVLDAEE+ RAVEEGRGLVVI
Sbjct: 311 QEKGAASLSIMQSRKSLLRAHIIALVLDAEEIINARRSMKHAEVVIARRAVEEGRGLVVI 370
Query: 431 VNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490
VNKMDLL G+ S+ Y++V E VPQEIQT+IPQVTGIPVVF SALEGRGR V++QVIDT
Sbjct: 371 VNKMDLLRGKHKSSSYEKVMEVVPQEIQTIIPQVTGIPVVFISALEGRGRTTVLNQVIDT 430
Query: 491 YQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSD 550
Y+KWC RLPT+RLNRWL+KVM RHSWKDQ+AQPK+KYFTQVKARPPTFVAF+ GK LSD
Sbjct: 431 YEKWCSRLPTARLNRWLQKVMSRHSWKDQAAQPKVKYFTQVKARPPTFVAFVRGKTQLSD 490
Query: 551 AELRFLTKSLKEDFDLGGIPIRITQRSVPRK----CGSSSSRQNTGQKVGRTFSDKRTV 605
++RFLTKSLKEDFDLGGIPIRI QRSV +K G+S + + + V RT SDKR++
Sbjct: 491 TDIRFLTKSLKEDFDLGGIPIRIMQRSVTKKDASGSGNSKNSHSVCRVVERTVSDKRSI 549
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490241|ref|XP_002268933.2| PREDICTED: GTPase Der-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/544 (72%), Positives = 452/544 (83%), Gaps = 26/544 (4%)
Query: 82 EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLI 141
+ LED++V + + ++K + V+FTK+D+NLLPTV+++GRPNVGKSALFNRLI
Sbjct: 104 DNLEDSNVGFDDVAPTDGPQIKDGNKNLVEFTKVDVNLLPTVILVGRPNVGKSALFNRLI 163
Query: 142 RRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201
RRREALVYNTPDDHVTRD REG+AKLGDLRF+VLDSAGLE ATSGSIL RTA MTANVL
Sbjct: 164 RRREALVYNTPDDHVTRDFREGIAKLGDLRFRVLDSAGLEMAATSGSILGRTADMTANVL 223
Query: 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES 261
A++QFAIF+IDVR+GLHP+DLEVGKWLR+HAP I I+ MNK ESL +G G LA AA E+
Sbjct: 224 ARSQFAIFLIDVRAGLHPMDLEVGKWLRRHAPGICTILVMNKSESLDDGAGLLAAAAGEA 283
Query: 262 LMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDES 321
LGFGDPIAISAETGLGM ELYE+LRP +ED+ML+VL+D +Q NSS DV +ES
Sbjct: 284 YELGFGDPIAISAETGLGMAELYESLRPLLEDHMLQVLDDKGSQENSSC-DV-----EES 337
Query: 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 381
K PLQLAIVGRPNVGKSTLLN LLQE+RVLVGPEAGLTRDSVR F++QGRTVYLVDTAG
Sbjct: 338 KSPLQLAIVGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLVDTAG 397
Query: 382 WLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------------RAVEEG 424
WLQR K EKGPASLSVMQSRK++MRAHVVALVLDAEE+ RAVEEG
Sbjct: 398 WLQRTKQEKGPASLSVMQSRKSIMRAHVVALVLDAEEIANARSSMKHAEVVIARRAVEEG 457
Query: 425 RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484
RGLVVIVNKMDLL GR+NS LY++V EAVP+EIQ VIPQVTGIPVVF SALEGRGRI+VM
Sbjct: 458 RGLVVIVNKMDLLKGRKNSKLYEKVMEAVPEEIQMVIPQVTGIPVVFISALEGRGRISVM 517
Query: 485 HQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSG 544
QVIDTY+KWCLRL T+RLNRWLRKVM RHSWKDQ+AQPKIKYFTQVKARPPTFVAF+ G
Sbjct: 518 RQVIDTYEKWCLRLSTARLNRWLRKVMSRHSWKDQAAQPKIKYFTQVKARPPTFVAFMGG 577
Query: 545 KKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRK---CGSSSSRQNTGQKVGRTFSD 601
K LS+ +LRFLTKSLKEDFDLGGIPIRI QRS+P+K G++ S + G+ R SD
Sbjct: 578 KTQLSNTDLRFLTKSLKEDFDLGGIPIRIMQRSIPKKLGGTGNTKSMSSAGRTSERISSD 637
Query: 602 KRTV 605
KR+V
Sbjct: 638 KRSV 641
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297801602|ref|XP_002868685.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297314521|gb|EFH44944.1| GTP-binding family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/636 (63%), Positives = 481/636 (75%), Gaps = 46/636 (7%)
Query: 1 MFHSWVRAVLARKSSLGFGLFGRSISS----STNPVNLCKPFNFT-LNNYSHIRASAAGS 55
M S VRA+ ARK+ + R + S S + + FNF+ L S +R + +
Sbjct: 1 MSQSLVRAISARKNQFSLKFYYRCVYSKQFHSQDQIIAPNCFNFSSLGFTSSVRHGSHQN 60
Query: 56 LYQVGSSLKCNL----LPEVPRGFCGVVQNEALEDTHVEPEPDGVVEDHKVKPLYEKPVD 111
Y+ +L +L L GF V +++ + D K K +Y+KP+D
Sbjct: 61 SYRFCGNLISDLNLACLVRSTNGFATVSDESNVDNGEK-------LVDKKPKVVYKKPID 113
Query: 112 FTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR 171
FTKID NLLPTVM++GRPNVGKSAL+NR REALVYNTPDDHVTRDIREG+AKLGDLR
Sbjct: 114 FTKIDANLLPTVMLMGRPNVGKSALYNR----REALVYNTPDDHVTRDIREGIAKLGDLR 169
Query: 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH 231
F VLDSAG+ETE +SG+IL RT MTANVLA+TQFA+ +IDVR+GLHPLDLEVGKWLRKH
Sbjct: 170 FNVLDSAGIETEVSSGTILGRTTAMTANVLARTQFAVLIIDVRAGLHPLDLEVGKWLRKH 229
Query: 232 APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291
APQIKPIV MNK ES+ GSL A+E+L LGFG+PIAISAETGLGMT LYE LRP +
Sbjct: 230 APQIKPIVVMNKSESI----GSLDEVASEALALGFGEPIAISAETGLGMTTLYEVLRPLL 285
Query: 292 EDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351
EDYM+ +LND C+Q+++ + + S E DESKLPLQLAIVG+PNVGKSTLLNALL+E+RVL
Sbjct: 286 EDYMVEMLNDICSQDDALSNENLSDEIDESKLPLQLAIVGKPNVGKSTLLNALLEEERVL 345
Query: 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVA 410
VGPEAGLTRD+VRV FE+QGRTVYLVDTAGWL+R E++KGPASLS+MQSRK+LMRAHV+A
Sbjct: 346 VGPEAGLTRDAVRVQFEFQGRTVYLVDTAGWLERTERDKGPASLSIMQSRKSLMRAHVIA 405
Query: 411 LVLDAEEV----------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 454
LVLDAEE+ RAVEEGRGLVVIVNKMD L GR+NS +YK++KEAVP
Sbjct: 406 LVLDAEEIIKAKCSMTHSEVVIARRAVEEGRGLVVIVNKMDRLRGRENSEMYKKIKEAVP 465
Query: 455 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRH 514
EIQTVIPQ+TGIPVVF SALEGRGR+ VM +V DTY++WC RL T RLNRWLRKVM RH
Sbjct: 466 IEIQTVIPQITGIPVVFISALEGRGRMEVMKEVTDTYKRWCSRLSTGRLNRWLRKVMSRH 525
Query: 515 SWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRIT 574
SWKD ++QPKIK+FTQVKARPPTFVAF+SGK L ++++RFLT+SLKEDFDLGG PIRI
Sbjct: 526 SWKDTASQPKIKFFTQVKARPPTFVAFVSGKTQLLESDIRFLTRSLKEDFDLGGTPIRII 585
Query: 575 QRSVPR-----KCGSSSSRQNTGQKVGRTFSDKRTV 605
QR VPR G S + + V RT SDKRT+
Sbjct: 586 QRVVPRAPPSGTGGGGSGNSSKSRVVQRTTSDKRTL 621
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242055911|ref|XP_002457101.1| hypothetical protein SORBIDRAFT_03g001220 [Sorghum bicolor] gi|241929076|gb|EES02221.1| hypothetical protein SORBIDRAFT_03g001220 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/557 (68%), Positives = 442/557 (79%), Gaps = 24/557 (4%)
Query: 68 LPEVPR-GF-CGVVQNEALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMI 125
LP +PR GF G + A E++ P G + K P+ + DFTK+D LLPTV++
Sbjct: 44 LPPLPRLGFSAGFGYSTATEESVPSARPKGKAKARK-NPMKQSRFDFTKVDAALLPTVIL 102
Query: 126 IGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185
+GRPNVGKSALFNR IRRREALVYNTP DHVTRDIREG+AKLGDLRF+VLDSAGLET AT
Sbjct: 103 VGRPNVGKSALFNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGLETAAT 162
Query: 186 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCE 245
SGSIL RTA MT NVLA++QFAIF+IDVR GL PLDLEVG+WLRKHA I +VAMNK E
Sbjct: 163 SGSILARTADMTGNVLARSQFAIFLIDVRDGLQPLDLEVGQWLRKHASGIHTLVAMNKSE 222
Query: 246 SLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQ 305
SL + G L AA E+ LGFGDP+AISAETGLGM ELYE LRP E+YM ++ N+ Q
Sbjct: 223 SL-DEHGLLTAAAGEAHKLGFGDPVAISAETGLGMAELYEILRPLFEEYMFQLPNNDLNQ 281
Query: 306 NNSSTQ-DVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR 364
++ ++ + + E DESKLPLQLAIVGRPNVGKSTLLN LLQE RVLVGPEAGLTRDS+R
Sbjct: 282 DDPISEVETEAHEGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIR 341
Query: 365 VHFEYQGRTVYLVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----- 418
F++ RTVYLVDTAGW++R KEKGPASLSV+QSRKNLMRAH+VALVLDAE++
Sbjct: 342 AQFQFDNRTVYLVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVALVLDAEKIAKSKS 401
Query: 419 -----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467
+A+EEGRGLVVIVNKMDLL G N L+ +V +AVP EIQTVIPQVTGI
Sbjct: 402 SMNHPEVVIARQAIEEGRGLVVIVNKMDLLRG--NQTLFNKVMDAVPSEIQTVIPQVTGI 459
Query: 468 PVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKY 527
PVVF SALEGRGR+AVM QVIDTY+KWCLRL TSRLNRWLRKVM RHSWKD + QPK+KY
Sbjct: 460 PVVFVSALEGRGRVAVMRQVIDTYEKWCLRLSTSRLNRWLRKVMSRHSWKDSATQPKVKY 519
Query: 528 FTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKCGSSSS 587
FTQVKARPPTFVAF+SGK LSD ++RFLTKSLKEDFD+GGIPIRI QRSVPRK + ++
Sbjct: 520 FTQVKARPPTFVAFMSGKTQLSDTDIRFLTKSLKEDFDIGGIPIRIVQRSVPRKASAKTN 579
Query: 588 RQNTGQKVGRTFSDKRT 604
+NTG ++ R +DKRT
Sbjct: 580 TRNTGPRIVRMKTDKRT 596
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432950|ref|XP_004134261.1| PREDICTED: GTPase Der-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/565 (66%), Positives = 442/565 (78%), Gaps = 27/565 (4%)
Query: 67 LLP----EVPRGFCGVVQNEALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPT 122
LLP + RG+CGV +N E + DG V +KV+ + VDF KI IN+LPT
Sbjct: 60 LLPLAAVHIARGYCGVPENGLPEKRLNDSASDGKVVANKVQGVQRNSVDFKKIPINMLPT 119
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V+++GRPNVGKSALFNR I+RREALVYNTPDDHVTRDIREG+AKLGDLRF VLDS+GLET
Sbjct: 120 VVLVGRPNVGKSALFNRFIKRREALVYNTPDDHVTRDIREGVAKLGDLRFVVLDSSGLET 179
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
A+SGSIL+RTA MT NVL K+Q AIF+ID R+GLHP DLEVGKWLR+HAP I +VAMN
Sbjct: 180 TASSGSILERTAKMTENVLLKSQLAIFLIDARAGLHPFDLEVGKWLRRHAPNINLVVAMN 239
Query: 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDS 302
K ESL + + +L A E+ LGFGDP+ ISAETGLGM ELY A++P +E YML+V++D+
Sbjct: 240 KSESLFDNSCTLLAAGLEAQRLGFGDPVPISAETGLGMQELYGAIKPVLEKYMLKVISDN 299
Query: 303 CTQNNSSTQDVTSPEDD---ESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 359
++ Q S EDD +SK LQLAIVGRPNVGKSTLLN LLQ DRVLVGPEAGLT
Sbjct: 300 GGRDRFH-QVTNSNEDDDTLDSKTKLQLAIVGRPNVGKSTLLNTLLQSDRVLVGPEAGLT 358
Query: 360 RDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEV 418
RDS+R FE++GRT+YLVDTAGWL R K EKGP SLSVMQS KNLMRAHVVALVLDAEE+
Sbjct: 359 RDSIRAEFEFEGRTIYLVDTAGWLHRTKEEKGPGSLSVMQSTKNLMRAHVVALVLDAEEI 418
Query: 419 ----------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP 462
RAVEEGR LVVIVNKMDL+ G++N A Y+++ EAVP+EIQTVIP
Sbjct: 419 ARERRSMKHSEVVIARRAVEEGRALVVIVNKMDLMRGKKNFASYEKILEAVPEEIQTVIP 478
Query: 463 QVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQ 522
QVTGIPV+F SALEGRGR+ VMHQVI+TY+KWC RL T+RLNRWLRKVM RHSWKDQSAQ
Sbjct: 479 QVTGIPVIFISALEGRGRLEVMHQVIETYEKWCTRLSTARLNRWLRKVMSRHSWKDQSAQ 538
Query: 523 PKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKC 582
PK+KYFTQVKARPPTFVAF+SGK LSD ++RFLTKSLKEDF+LGGIPIRI QR VP+K
Sbjct: 539 PKVKYFTQVKARPPTFVAFVSGKIRLSDTDIRFLTKSLKEDFNLGGIPIRIMQRVVPKKT 598
Query: 583 --GSSSSRQNTGQKVGRTFSDKRTV 605
G S ++ + R S+KR++
Sbjct: 599 VDGGGKSNKHVVRTPERIRSNKRSL 623
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084119|emb|CBI24507.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/596 (66%), Positives = 453/596 (76%), Gaps = 74/596 (12%)
Query: 84 LEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRR 143
LED++V + + ++K + V+FTK+D+NLLPTV+++GRPNVGKSALFNRLIRR
Sbjct: 106 LEDSNVGFDDVAPTDGPQIKDGNKNLVEFTKVDVNLLPTVILVGRPNVGKSALFNRLIRR 165
Query: 144 REALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 203
REALVYNTPDDHVTRD REG+AKLGDLRF+VLDSAGLE ATSGSIL RTA MTANVLA+
Sbjct: 166 REALVYNTPDDHVTRDFREGIAKLGDLRFRVLDSAGLEMAATSGSILGRTADMTANVLAR 225
Query: 204 TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM 263
+QFAIF+IDVR+GLHP+DLEVGKWLR+HAP I I+ MNK ESL +G G LA AA E+
Sbjct: 226 SQFAIFLIDVRAGLHPMDLEVGKWLRRHAPGICTILVMNKSESLDDGAGLLAAAAGEAYE 285
Query: 264 LGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLN----------------------- 300
LGFGDPIAISAETGLGM ELYE+LRP +ED+ML+VL+
Sbjct: 286 LGFGDPIAISAETGLGMAELYESLRPLLEDHMLQVLDETECGFWKATGLSIPLLWDSLLH 345
Query: 301 -----------DSCTQNNSS--------------------TQDVTSPEDDESKLPLQLAI 329
D N SS +Q+ +S + +ESK PLQLAI
Sbjct: 346 AQNEEVGREWEDLTIGNISSVVFWFSSIYAAASGALAYKGSQENSSCDVEESKSPLQLAI 405
Query: 330 VGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-E 388
VGRPNVGKSTLLN LLQE+RVLVGPEAGLTRDSVR F++QGRTVYLVDTAGWLQR K E
Sbjct: 406 VGRPNVGKSTLLNTLLQENRVLVGPEAGLTRDSVRAQFQFQGRTVYLVDTAGWLQRTKQE 465
Query: 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------------RAVEEGRGLVVIVN 432
KGPASLSVMQSRK++MRAHVVALVLDAEE+ RAVEEGRGLVVIVN
Sbjct: 466 KGPASLSVMQSRKSIMRAHVVALVLDAEEIANARSSMKHAEVVIARRAVEEGRGLVVIVN 525
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492
KMDLL GR+NS LY++V EAVP+EIQ VIPQVTGIPVVF SALEGRGRI+VM QVIDTY+
Sbjct: 526 KMDLLKGRKNSKLYEKVMEAVPEEIQMVIPQVTGIPVVFISALEGRGRISVMRQVIDTYE 585
Query: 493 KWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAE 552
KWCLRL T+RLNRWLRKVM RHSWKDQ+AQPKIKYFTQVKARPPTFVAF+ GK LS+ +
Sbjct: 586 KWCLRLSTARLNRWLRKVMSRHSWKDQAAQPKIKYFTQVKARPPTFVAFMGGKTQLSNTD 645
Query: 553 LRFLTKSLKEDFDLGGIPIRITQRSVPRK---CGSSSSRQNTGQKVGRTFSDKRTV 605
LRFLTKSLKEDFDLGGIPIRI QRS+P+K G++ S + G+ R SDKR+V
Sbjct: 646 LRFLTKSLKEDFDLGGIPIRIMQRSIPKKLGGTGNTKSMSSAGRTSERISSDKRSV 701
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|414875662|tpg|DAA52793.1| TPA: hypothetical protein ZEAMMB73_456660 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/547 (69%), Positives = 432/547 (78%), Gaps = 23/547 (4%)
Query: 77 GVVQNEALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSAL 136
G + A ED+ +P + K P+ + DFTK+D LLPTV+++GRPNVGKSAL
Sbjct: 66 GFGYSPATEDSAAAAKPKTKTKARK-HPMKQSRFDFTKVDAALLPTVILVGRPNVGKSAL 124
Query: 137 FNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGM 196
FNR IRRREALVYNTP DHVTRDIREG+AKLGDLRF+VLDSAGLET ATSGSIL RTA M
Sbjct: 125 FNRFIRRREALVYNTPGDHVTRDIREGVAKLGDLRFRVLDSAGLETAATSGSILARTADM 184
Query: 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAG 256
T NVLA++QFAIF+IDVR GL PLDLEVG+WLRKHA I +VAMNK ESL + G L
Sbjct: 185 TGNVLARSQFAIFLIDVRDGLQPLDLEVGQWLRKHASGIHTLVAMNKSESL-DEHGFLTA 243
Query: 257 AAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSP 316
AA E+ LGFGDP+AISAETGLGM ELYE LRP E+YM ++ N+ Q++ ++ T
Sbjct: 244 AAGEAHKLGFGDPVAISAETGLGMAELYEILRPLFEEYMFQLRNNDLNQDDPISEVETEA 303
Query: 317 ED-DESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY 375
D DESKLPLQLAIVGRPNVGKSTLLN LLQE RVLVGPEAGLTRDS+R F++ RTVY
Sbjct: 304 HDGDESKLPLQLAIVGRPNVGKSTLLNTLLQEQRVLVGPEAGLTRDSIRAQFQFDSRTVY 363
Query: 376 LVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------------- 418
LVDTAGW++R KEKGPASLSV+QSRKNLMRAH+VALVLDAE++
Sbjct: 364 LVDTAGWMERSGKEKGPASLSVVQSRKNLMRAHIVALVLDAEKIAKSKSSMNHPEIVIAR 423
Query: 419 RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 478
+A+EEGRGLVVIVNKMDLL R N L+ +V +AVP+EIQTVIPQVTGIP VF SALEGR
Sbjct: 424 QAIEEGRGLVVIVNKMDLL--RDNQTLFNKVMDAVPREIQTVIPQVTGIPAVFVSALEGR 481
Query: 479 GRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTF 538
GRIAVM QVIDTY+KWCLRL TSRLNRWLRKVM RHSWKD + QPK+KYFTQVKARPPTF
Sbjct: 482 GRIAVMRQVIDTYEKWCLRLSTSRLNRWLRKVMSRHSWKDSATQPKVKYFTQVKARPPTF 541
Query: 539 VAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKC-GSSSSRQNTGQKVGR 597
VAF+SGK LSD + RFLTKSLKEDFD+GGIPIRI QRSVPRK ++ +NTG +V R
Sbjct: 542 VAFMSGKTQLSDTDTRFLTKSLKEDFDIGGIPIRIIQRSVPRKAYAKRNNTRNTGPRVVR 601
Query: 598 TFSDKRT 604
+DKRT
Sbjct: 602 MKTDKRT 608
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 607 | ||||||
| UNIPROTKB|Q5LR04 | 487 | der "GTPase Der" [Ruegeria pom | 0.721 | 0.899 | 0.386 | 1.2e-74 | |
| TIGR_CMR|SPO_2328 | 487 | SPO_2328 "GTP-binding protein | 0.721 | 0.899 | 0.386 | 1.2e-74 | |
| UNIPROTKB|Q2GGW4 | 442 | engA "GTPase Der" [Ehrlichia c | 0.393 | 0.540 | 0.334 | 3.3e-57 | |
| TIGR_CMR|ECH_0504 | 442 | ECH_0504 "GTP-binding protein | 0.393 | 0.540 | 0.334 | 3.3e-57 | |
| UNIPROTKB|Q2GKV6 | 440 | der "GTPase Der" [Anaplasma ph | 0.410 | 0.565 | 0.318 | 1.1e-55 | |
| TIGR_CMR|APH_0390 | 440 | APH_0390 "putative GTP-binding | 0.410 | 0.565 | 0.318 | 1.1e-55 | |
| UNIPROTKB|Q3Z6P5 | 441 | der "GTPase Der" [Dehalococcoi | 0.497 | 0.684 | 0.322 | 3.7e-53 | |
| TIGR_CMR|DET_1395 | 441 | DET_1395 "GTP-binding protein" | 0.497 | 0.684 | 0.322 | 3.7e-53 | |
| UNIPROTKB|Q74AX4 | 438 | der "GTPase Der" [Geobacter su | 0.429 | 0.595 | 0.343 | 3.6e-51 | |
| TIGR_CMR|GSU_2225 | 438 | GSU_2225 "GTP-binding protein | 0.429 | 0.595 | 0.343 | 3.6e-51 |
| UNIPROTKB|Q5LR04 der "GTPase Der" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 183/474 (38%), Positives = 273/474 (57%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ I+GRPNVGKS LFNRL+ +R ALV + P VTRD+REG A+LGDLRF V+D+AGLE
Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPG--VTRDLREGQARLGDLRFTVIDTAGLE 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
T AT S+ R +T + +FMID R+G+ P D LR+ + + I+A
Sbjct: 62 T-ATDDSLQGRMRRLTERAVDMADICLFMIDARAGVTPNDEIFADILRRRSAHV--ILAA 118
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLND 301
NK E G + AG E+ LG G+PI +SAE G G+ ELY L P + D M + +
Sbjct: 119 NKAE----GAAADAGVI-EAYGLGLGEPIRLSAEHGEGLNELYAVLMP-LADEMEQQAEE 172
Query: 302 SCTQNN-------SSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP 354
+ + ++V +P + PLQ+A+VGRPN GKSTL+N +L EDR+L GP
Sbjct: 173 QAPETDVDLDPEDEDGEEVAAPHAITREKPLQVAVVGRPNAGKSTLINRILGEDRLLTGP 232
Query: 355 EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVL 413
EAG+TRD++ + ++ + + DTAG ++ K ++ LSV + + A VV ++L
Sbjct: 233 EAGITRDAISLQIDWNDTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLL 292
Query: 414 DA------EEVR----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463
DA +++R A EGR +V+ VNK D+ +Q+ + +KE+ + ++PQ
Sbjct: 293 DAAIPFEQQDLRIADLAEREGRAVVIAVNKWDVEENKQDKL--RELKES----FERLLPQ 346
Query: 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWK-DQSAQ 522
+ G P+V SA GRG + ++ ++ W R+PT+ LNRWL ++ +H Q +
Sbjct: 347 LRGAPLVTVSAKTGRGLERLHDAILRAHEVWNRRIPTAALNRWLIGMLEQHPPPAPQGKR 406
Query: 523 PKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
K++Y TQ K RPP FV S + ++ R+L L+ DFD+ G PIR+T R
Sbjct: 407 IKLRYMTQAKTRPPGFVVMCSHPDKMPESYSRYLVNGLRADFDMPGTPIRLTLR 460
|
|
| TIGR_CMR|SPO_2328 SPO_2328 "GTP-binding protein EngA" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 183/474 (38%), Positives = 273/474 (57%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T+ I+GRPNVGKS LFNRL+ +R ALV + P VTRD+REG A+LGDLRF V+D+AGLE
Sbjct: 4 TLAIVGRPNVGKSTLFNRLVGKRLALVDDQPG--VTRDLREGQARLGDLRFTVIDTAGLE 61
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
T AT S+ R +T + +FMID R+G+ P D LR+ + + I+A
Sbjct: 62 T-ATDDSLQGRMRRLTERAVDMADICLFMIDARAGVTPNDEIFADILRRRSAHV--ILAA 118
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLND 301
NK E G + AG E+ LG G+PI +SAE G G+ ELY L P + D M + +
Sbjct: 119 NKAE----GAAADAGVI-EAYGLGLGEPIRLSAEHGEGLNELYAVLMP-LADEMEQQAEE 172
Query: 302 SCTQNN-------SSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP 354
+ + ++V +P + PLQ+A+VGRPN GKSTL+N +L EDR+L GP
Sbjct: 173 QAPETDVDLDPEDEDGEEVAAPHAITREKPLQVAVVGRPNAGKSTLINRILGEDRLLTGP 232
Query: 355 EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVL 413
EAG+TRD++ + ++ + + DTAG ++ K ++ LSV + + A VV ++L
Sbjct: 233 EAGITRDAISLQIDWNDTPMRIFDTAGMRKKAKVQEKLEKLSVSDGLRAVKFAEVVVVLL 292
Query: 414 DA------EEVR----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463
DA +++R A EGR +V+ VNK D+ +Q+ + +KE+ + ++PQ
Sbjct: 293 DAAIPFEQQDLRIADLAEREGRAVVIAVNKWDVEENKQDKL--RELKES----FERLLPQ 346
Query: 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWK-DQSAQ 522
+ G P+V SA GRG + ++ ++ W R+PT+ LNRWL ++ +H Q +
Sbjct: 347 LRGAPLVTVSAKTGRGLERLHDAILRAHEVWNRRIPTAALNRWLIGMLEQHPPPAPQGKR 406
Query: 523 PKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
K++Y TQ K RPP FV S + ++ R+L L+ DFD+ G PIR+T R
Sbjct: 407 IKLRYMTQAKTRPPGFVVMCSHPDKMPESYSRYLVNGLRADFDMPGTPIRLTLR 460
|
|
| UNIPROTKB|Q2GGW4 engA "GTPase Der" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 88/263 (33%), Positives = 151/263 (57%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
++L+IVGRPN GKST +N LL E+R++V PE G TRDS+ V + Y+G+ L+DTAG
Sbjct: 174 IKLSIVGRPNAGKSTFINRLLAENRMIVSPEPGTTRDSIDVEYTYRGQKFTLIDTAG--M 231
Query: 385 REKEKGPASLSVMQSRK---NLMRAHVVALVLDA------EEVR----AVEEGRGLVVIV 431
R+K K S+ V K ++ R+ +V L++D+ +++ A+++G+ +++ +
Sbjct: 232 RKKAKVTESIEVTSVHKTIESINRSDIVILMIDSVYGIEQQDLSIAELAIQKGKAIIIAL 291
Query: 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491
NK D+++ + S L K + + +PV+ SAL+ ++ I+ Y
Sbjct: 292 NKWDMIAKKDRSELLKDICNYNKLNFK--------VPVIEVSALKNINCNKIIETSIELY 343
Query: 492 QKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIKYFTQVKARPPTFVAFLSGKKTLSD 550
+ +R+ TS LN+WL+ + H + + KIKY TQVK PPTF+A ++G ++
Sbjct: 344 KCLTMRISTSVLNKWLKLAVEYHKPPLCNGKVVKIKYITQVKVIPPTFIAVVNGSYSIDL 403
Query: 551 AELRFLTKSLKEDFDLGGIPIRI 573
++L SL++ F + GIPIR+
Sbjct: 404 TYRQYLMSSLRKHFSIDGIPIRL 426
|
|
| TIGR_CMR|ECH_0504 ECH_0504 "GTP-binding protein EngA" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 88/263 (33%), Positives = 151/263 (57%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
++L+IVGRPN GKST +N LL E+R++V PE G TRDS+ V + Y+G+ L+DTAG
Sbjct: 174 IKLSIVGRPNAGKSTFINRLLAENRMIVSPEPGTTRDSIDVEYTYRGQKFTLIDTAG--M 231
Query: 385 REKEKGPASLSVMQSRK---NLMRAHVVALVLDA------EEVR----AVEEGRGLVVIV 431
R+K K S+ V K ++ R+ +V L++D+ +++ A+++G+ +++ +
Sbjct: 232 RKKAKVTESIEVTSVHKTIESINRSDIVILMIDSVYGIEQQDLSIAELAIQKGKAIIIAL 291
Query: 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491
NK D+++ + S L K + + +PV+ SAL+ ++ I+ Y
Sbjct: 292 NKWDMIAKKDRSELLKDICNYNKLNFK--------VPVIEVSALKNINCNKIIETSIELY 343
Query: 492 QKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIKYFTQVKARPPTFVAFLSGKKTLSD 550
+ +R+ TS LN+WL+ + H + + KIKY TQVK PPTF+A ++G ++
Sbjct: 344 KCLTMRISTSVLNKWLKLAVEYHKPPLCNGKVVKIKYITQVKVIPPTFIAVVNGSYSIDL 403
Query: 551 AELRFLTKSLKEDFDLGGIPIRI 573
++L SL++ F + GIPIR+
Sbjct: 404 TYRQYLMSSLRKHFSIDGIPIRL 426
|
|
| UNIPROTKB|Q2GKV6 der "GTPase Der" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 86/270 (31%), Positives = 148/270 (54%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY 375
P+ D+ + P+ ++I+G+PNVGKST +N++L E+RV+ AG TRDS+ + Y+G T+
Sbjct: 167 PKKDQDR-PIAISIIGQPNVGKSTFVNSILGEERVITSGIAGTTRDSISAEYSYKGITLL 225
Query: 376 LVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEE----------VRAVEEG 424
L DTAG +R K + LSV + L ++HVV L++D + A+++G
Sbjct: 226 LTDTAGIRKRTKVTENMEKLSVQSAIHALSKSHVVILIVDFTQGISQQDLSIASTAIKDG 285
Query: 425 RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484
+G+V+ +NK DL++ K ++A+ I+ +P++ SALE G V+
Sbjct: 286 KGIVLALNKADLVND-------KAAEDAILNAIRQYSRVDFDVPIMKMSALENIGCDKVL 338
Query: 485 HQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIKYFTQVKARPPTFVAFLS 543
+ + Y+ + TS+LN+WL + H Q+ + ++KY +QV PPTFV +
Sbjct: 339 SKAVKIYESASTHISTSKLNKWLGTAIDYHPPHLQNKKKVRLKYISQVSTLPPTFVIATN 398
Query: 544 GKKTLSDAELRFLTKSLKEDFDLGGIPIRI 573
+ S + +L S + F + G+PIR+
Sbjct: 399 STEVESTYQT-YLKNSFLKHFSMQGVPIRM 427
|
|
| TIGR_CMR|APH_0390 APH_0390 "putative GTP-binding protein EngA" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 1.1e-55, Sum P(2) = 1.1e-55
Identities = 86/270 (31%), Positives = 148/270 (54%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY 375
P+ D+ + P+ ++I+G+PNVGKST +N++L E+RV+ AG TRDS+ + Y+G T+
Sbjct: 167 PKKDQDR-PIAISIIGQPNVGKSTFVNSILGEERVITSGIAGTTRDSISAEYSYKGITLL 225
Query: 376 LVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEE----------VRAVEEG 424
L DTAG +R K + LSV + L ++HVV L++D + A+++G
Sbjct: 226 LTDTAGIRKRTKVTENMEKLSVQSAIHALSKSHVVILIVDFTQGISQQDLSIASTAIKDG 285
Query: 425 RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484
+G+V+ +NK DL++ K ++A+ I+ +P++ SALE G V+
Sbjct: 286 KGIVLALNKADLVND-------KAAEDAILNAIRQYSRVDFDVPIMKMSALENIGCDKVL 338
Query: 485 HQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQP-KIKYFTQVKARPPTFVAFLS 543
+ + Y+ + TS+LN+WL + H Q+ + ++KY +QV PPTFV +
Sbjct: 339 SKAVKIYESASTHISTSKLNKWLGTAIDYHPPHLQNKKKVRLKYISQVSTLPPTFVIATN 398
Query: 544 GKKTLSDAELRFLTKSLKEDFDLGGIPIRI 573
+ S + +L S + F + G+PIR+
Sbjct: 399 STEVESTYQT-YLKNSFLKHFSMQGVPIRM 427
|
|
| UNIPROTKB|Q3Z6P5 der "GTPase Der" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 3.7e-53, Sum P(2) = 3.7e-53
Identities = 107/332 (32%), Positives = 167/332 (50%)
Query: 264 LGFGDPIAISAETGLGMTELYEALRPS-VEDYMLRVLNDSCTQNNSSTQDVTSPEDDESK 322
L G A G G + A S + D M RVL + Q + +PE+D S
Sbjct: 127 LKMGQEAAEFYSLGFGEPSVISAFHGSGISDLMDRVLEEL------PDQPIATPEEDNS- 179
Query: 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382
++LA+VGR NVGKSTLLN + ++R +V G TRD++ + G V L+DTAG
Sbjct: 180 --VKLALVGRTNVGKSTLLNTFMGQERSIVSNIPGTTRDAIDTPLNFNGTNVLLIDTAGI 237
Query: 383 LQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE----------GRGLVVIV 431
+R K E G SV+++ K + RA +V LV+D EE+ ++ +G+++I+
Sbjct: 238 RRRGKVESGVEKYSVLRALKAVDRADIVLLVMDTEELVTAQDTHIAGYVRDTAKGIIIIL 297
Query: 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491
NK DL G+ K V Q IQ+ + P++F S GRG ++ +
Sbjct: 298 NKWDLGKGQD--------KAEVTQTIQSRFKFLDYAPILFVSGKTGRGVDTIIPMALKVQ 349
Query: 492 QKWCLRLPTSRLNRWLRKVMGRHSWKDQS-AQPKIKYFTQVKARPPTFVAFLSGKKTLSD 550
++ R+PT+++N + + + H+ Q Q KI Y TQ PP+FV F++ K +
Sbjct: 350 EERNKRIPTAKVNSVVTEALSAHTPPHQGKTQLKIYYATQADTNPPSFVFFVNNPKLVHF 409
Query: 551 AELRFLTKSLKEDFDLGGIPIRITQRSVPRKC 582
+ RF+ L+E F G PIR+T ++ KC
Sbjct: 410 SYERFIENRLRESFGFFGTPIRLTFKARGEKC 441
|
|
| TIGR_CMR|DET_1395 DET_1395 "GTP-binding protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 3.7e-53, Sum P(2) = 3.7e-53
Identities = 107/332 (32%), Positives = 167/332 (50%)
Query: 264 LGFGDPIAISAETGLGMTELYEALRPS-VEDYMLRVLNDSCTQNNSSTQDVTSPEDDESK 322
L G A G G + A S + D M RVL + Q + +PE+D S
Sbjct: 127 LKMGQEAAEFYSLGFGEPSVISAFHGSGISDLMDRVLEEL------PDQPIATPEEDNS- 179
Query: 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382
++LA+VGR NVGKSTLLN + ++R +V G TRD++ + G V L+DTAG
Sbjct: 180 --VKLALVGRTNVGKSTLLNTFMGQERSIVSNIPGTTRDAIDTPLNFNGTNVLLIDTAGI 237
Query: 383 LQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE----------GRGLVVIV 431
+R K E G SV+++ K + RA +V LV+D EE+ ++ +G+++I+
Sbjct: 238 RRRGKVESGVEKYSVLRALKAVDRADIVLLVMDTEELVTAQDTHIAGYVRDTAKGIIIIL 297
Query: 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491
NK DL G+ K V Q IQ+ + P++F S GRG ++ +
Sbjct: 298 NKWDLGKGQD--------KAEVTQTIQSRFKFLDYAPILFVSGKTGRGVDTIIPMALKVQ 349
Query: 492 QKWCLRLPTSRLNRWLRKVMGRHSWKDQS-AQPKIKYFTQVKARPPTFVAFLSGKKTLSD 550
++ R+PT+++N + + + H+ Q Q KI Y TQ PP+FV F++ K +
Sbjct: 350 EERNKRIPTAKVNSVVTEALSAHTPPHQGKTQLKIYYATQADTNPPSFVFFVNNPKLVHF 409
Query: 551 AELRFLTKSLKEDFDLGGIPIRITQRSVPRKC 582
+ RF+ L+E F G PIR+T ++ KC
Sbjct: 410 SYERFIENRLRESFGFFGTPIRLTFKARGEKC 441
|
|
| UNIPROTKB|Q74AX4 der "GTPase Der" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 3.6e-51, Sum P(2) = 3.6e-51
Identities = 97/282 (34%), Positives = 145/282 (51%)
Query: 311 QDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ 370
Q TSPE+ + ++A+VGRPNVGKS+L+N LL +RV+ P G TRDSV F
Sbjct: 166 QRTTSPEERNAT---KIAVVGRPNVGKSSLVNRLLGYERVVANPTPGTTRDSVDTWFTCN 222
Query: 371 GRTVYLVDTAGWLQREKEKGPAS-LSVMQSRKNLMRAHVVALVLDAEE-VR--------- 419
+ L+DTAG ++ K SV+ S +++ RA VV +VL+AEE V
Sbjct: 223 KKRYLLIDTAGIRRKGKTTQKIEKYSVVDSLRSIERADVVLIVLNAEEGVTEQDERIAGY 282
Query: 420 AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
A E G+ + +VNK D + + NS++ + V +I+T + +P+VF SA G+
Sbjct: 283 AFEAGKACIFVVNKWDAIE-KDNSSVGRFV-----DKIRTEFKYLAFVPIVFVSAKTGQR 336
Query: 480 RIAVMHQVIDTYQKWCLRLPTSRLNR-WLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTF 538
+M +V ++ R+ TS LNR + V H + K + TQV RPPTF
Sbjct: 337 LNRIMEEVEKVMAQYVKRVTTSELNRIFSAAVESHHHPLVMGRRVKFYFATQVGTRPPTF 396
Query: 539 VAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPR 580
V F + + + R+L +E FD G P+R+ R R
Sbjct: 397 VIFTNRPDGMHFSYERYLVNKFREAFDFTGTPLRLLFRGRER 438
|
|
| TIGR_CMR|GSU_2225 GSU_2225 "GTP-binding protein Era, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 337 (123.7 bits), Expect = 3.6e-51, Sum P(2) = 3.6e-51
Identities = 97/282 (34%), Positives = 145/282 (51%)
Query: 311 QDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ 370
Q TSPE+ + ++A+VGRPNVGKS+L+N LL +RV+ P G TRDSV F
Sbjct: 166 QRTTSPEERNAT---KIAVVGRPNVGKSSLVNRLLGYERVVANPTPGTTRDSVDTWFTCN 222
Query: 371 GRTVYLVDTAGWLQREKEKGPAS-LSVMQSRKNLMRAHVVALVLDAEE-VR--------- 419
+ L+DTAG ++ K SV+ S +++ RA VV +VL+AEE V
Sbjct: 223 KKRYLLIDTAGIRRKGKTTQKIEKYSVVDSLRSIERADVVLIVLNAEEGVTEQDERIAGY 282
Query: 420 AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
A E G+ + +VNK D + + NS++ + V +I+T + +P+VF SA G+
Sbjct: 283 AFEAGKACIFVVNKWDAIE-KDNSSVGRFV-----DKIRTEFKYLAFVPIVFVSAKTGQR 336
Query: 480 RIAVMHQVIDTYQKWCLRLPTSRLNR-WLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTF 538
+M +V ++ R+ TS LNR + V H + K + TQV RPPTF
Sbjct: 337 LNRIMEEVEKVMAQYVKRVTTSELNRIFSAAVESHHHPLVMGRRVKFYFATQVGTRPPTF 396
Query: 539 VAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPR 580
V F + + + R+L +E FD G P+R+ R R
Sbjct: 397 VIFTNRPDGMHFSYERYLVNKFREAFDFTGTPLRLLFRGRER 438
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 607 | |||
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 1e-145 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 1e-138 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 1e-126 | |
| PRK03003 | 472 | PRK03003, PRK03003, GTP-binding protein Der; Revie | 2e-66 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 8e-63 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 3e-58 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 1e-54 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 4e-27 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 1e-25 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 3e-25 | |
| cd00880 | 161 | cd00880, Era_like, E | 2e-24 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 1e-22 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 8e-21 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 3e-20 | |
| cd00880 | 161 | cd00880, Era_like, E | 1e-18 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 3e-18 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 1e-17 | |
| TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas | 5e-17 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 5e-16 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 3e-15 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 4e-15 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 4e-15 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 6e-15 | |
| TIGR03918 | 391 | TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster | 2e-13 | |
| PRK03003 | 472 | PRK03003, PRK03003, GTP-binding protein Der; Revie | 1e-12 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 3e-12 | |
| cd04163 | 168 | cd04163, Era, E | 9e-12 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 1e-11 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 2e-11 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 4e-11 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 5e-11 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 6e-11 | |
| cd04163 | 168 | cd04163, Era, E | 6e-11 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 2e-10 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 3e-10 | |
| cd01881 | 167 | cd01881, Obg_like, Obg-like family of GTPases cons | 8e-10 | |
| pfam02421 | 190 | pfam02421, FeoB_N, Ferrous iron transport protein | 1e-09 | |
| COG0218 | 200 | COG0218, COG0218, Predicted GTPase [General functi | 1e-09 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 2e-09 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 2e-09 | |
| TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas | 4e-09 | |
| TIGR00436 | 270 | TIGR00436, era, GTP-binding protein Era | 5e-09 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 6e-09 | |
| cd01876 | 170 | cd01876, YihA_EngB, YihA (EngB) GTPase family | 9e-09 | |
| COG0218 | 200 | COG0218, COG0218, Predicted GTPase [General functi | 1e-08 | |
| TIGR00437 | 591 | TIGR00437, feoB, ferrous iron transporter FeoB | 2e-08 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 4e-08 | |
| cd00881 | 183 | cd00881, GTP_translation_factor, GTP translation f | 8e-08 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 1e-07 | |
| cd01849 | 146 | cd01849, YlqF_related_GTPase, Circularly permuted | 1e-07 | |
| pfam00009 | 184 | pfam00009, GTP_EFTU, Elongation factor Tu GTP bind | 4e-07 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 4e-07 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 7e-07 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 9e-07 | |
| cd04178 | 171 | cd04178, Nucleostemin_like, A circularly permuted | 2e-06 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 3e-06 | |
| cd04178 | 171 | cd04178, Nucleostemin_like, A circularly permuted | 4e-06 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 4e-06 | |
| cd01897 | 167 | cd01897, NOG, Nucleolar GTP-binding protein (NOG) | 6e-06 | |
| cd01897 | 167 | cd01897, NOG, Nucleolar GTP-binding protein (NOG) | 8e-06 | |
| PRK00454 | 196 | PRK00454, engB, GTP-binding protein YsxC; Reviewed | 8e-06 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 9e-06 | |
| PRK15494 | 339 | PRK15494, era, GTPase Era; Provisional | 9e-06 | |
| cd01881 | 167 | cd01881, Obg_like, Obg-like family of GTPases cons | 1e-05 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 1e-05 | |
| TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi | 2e-05 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 2e-05 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 3e-05 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 4e-05 | |
| pfam02421 | 190 | pfam02421, FeoB_N, Ferrous iron transport protein | 5e-05 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 1e-04 | |
| PRK15494 | 339 | PRK15494, era, GTPase Era; Provisional | 1e-04 | |
| COG1163 | 365 | COG1163, DRG, Predicted GTPase [General function p | 1e-04 | |
| COG1084 | 346 | COG1084, COG1084, Predicted GTPase [General functi | 1e-04 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 2e-04 | |
| cd01852 | 201 | cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | 2e-04 | |
| TIGR03598 | 178 | TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi | 3e-04 | |
| PRK09601 | 364 | PRK09601, PRK09601, GTP-binding protein YchF; Revi | 3e-04 | |
| COG0012 | 372 | COG0012, COG0012, Predicted GTPase, probable trans | 3e-04 | |
| PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 4e-04 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 9e-04 | |
| COG1084 | 346 | COG1084, COG1084, Predicted GTPase [General functi | 0.002 | |
| cd01896 | 233 | cd01896, DRG, Developmentally Regulated GTP-bindin | 0.002 | |
| cd01900 | 274 | cd01900, YchF, YchF GTPase | 0.002 | |
| cd01857 | 140 | cd01857, HSR1_MMR1, A circularly permuted subfamil | 0.002 | |
| cd01855 | 191 | cd01855, YqeH, Circularly permuted YqeH GTPase | 0.003 | |
| cd01893 | 168 | cd01893, Miro1, Mitochondrial Rho family 1 (Miro1) | 0.003 | |
| COG3596 | 296 | COG3596, COG3596, Predicted GTPase [General functi | 0.003 | |
| PRK00454 | 196 | PRK00454, engB, GTP-binding protein YsxC; Reviewed | 0.004 | |
| COG1618 | 179 | COG1618, COG1618, Predicted nucleotide kinase [Nuc | 0.004 | |
| PTZ00258 | 390 | PTZ00258, PTZ00258, GTP-binding protein; Provision | 0.004 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 426 bits (1099), Expect = e-145
Identities = 175/483 (36%), Positives = 251/483 (51%), Gaps = 78/483 (16%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
P V I+GRPNVGKS LFNRL +R+A+V +TP VTRD G A+ F ++D+ G
Sbjct: 1 KPVVAIVGRPNVGKSTLFNRLTGKRDAIVADTP--GVTRDRIYGEAEWLGREFILIDTGG 58
Query: 180 LETEATSGSILDRTAGMTANVLAKTQFAI-------FMIDVRSGLHPLDLEVGKWLRKHA 232
+E G + + + AI F++D R+GL P D E+ K LRK
Sbjct: 59 IE---------PDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSN 109
Query: 233 PQIKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291
KP I+ +NK + A E LG G+P ISAE G G+ +L +A+ +
Sbjct: 110 ---KPVILVVNKVDGPDEEAD-----AYEFYSLGLGEPYPISAEHGRGIGDLLDAILEEL 161
Query: 292 EDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351
+ E+DE P+++AI+GRPNVGKS+L+NALL E+RV+
Sbjct: 162 PE---------------------EEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVI 200
Query: 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR-----EK-EKGPASLSVMQSRKNLMR 405
V AG TRDS+ FE G+ L+DTAG ++R E EK SV+++ K + R
Sbjct: 201 VSDIAGTTRDSIDTPFERDGQKYTLIDTAG-IRRKGKVTEGVEK----YSVIRTLKAIER 255
Query: 406 AHVVALVLDAEE----------VRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455
A VV LV+DA E A+E GR LV++VNK DL+ + + K+
Sbjct: 256 ADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKT----MEEFKK---- 307
Query: 456 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHS 515
E++ +P + P+VF SAL G+G ++ + + Y+ R+ TS LNR L + + RH
Sbjct: 308 ELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEEAVERHP 367
Query: 516 W-KDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRIT 574
+ + KIKY TQV PPTFV F++ + L + R+L L+E FD G PIR+
Sbjct: 368 PPLVKGRRLKIKYATQVGTNPPTFVLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLE 427
Query: 575 QRS 577
R
Sbjct: 428 FRE 430
|
Length = 435 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 409 bits (1055), Expect = e-138
Identities = 174/478 (36%), Positives = 254/478 (53%), Gaps = 76/478 (15%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
V I+GRPNVGKS LFNRL +R+A+V +TP VTRD + G A+ G F ++D+ G+E
Sbjct: 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTP--GVTRDRKYGDAEWGGREFILIDTGGIE 58
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAI-------FMIDVRSGLHPLDLEVGKWLRKHAPQ 234
+ G+ + + + AI F++D R GL P D E+ KWLRK
Sbjct: 59 EDDD---------GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG-- 107
Query: 235 IKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293
KP I+ NK + AAE LGFG+PI ISAE G G+ +L +A+ + +
Sbjct: 108 -KPVILVANKIDGKKEDA-----VAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161
Query: 294 YMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVG 353
++ E+D P+++AI+GRPNVGKSTL+NALL E+RV+V
Sbjct: 162 -----------------EEEEEEEEDG---PIKIAIIGRPNVGKSTLVNALLGEERVIVS 201
Query: 354 PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK------EKGPASLSVMQSRKNLMRAH 407
AG TRDS+ + FE G+ L+DTAG ++R+ EK SV+++ K + RA
Sbjct: 202 DIAGTTRDSIDIPFERNGKKYTLIDTAG-IRRKGKVTEGVEK----YSVLRTLKAIERAD 256
Query: 408 VVALVLDAEE----------VRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457
VV LVLDA E A+E G+ LV++VNK DL+ ++ + K+ E+
Sbjct: 257 VVLLVLDATEGITEQDLRIAGLALEAGKALVIVVNKWDLV---KDEKTREEFKK----EL 309
Query: 458 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSW- 516
+ +P + P+VF SAL G+G ++ + + Y+ R+ TS+LNR L + + H
Sbjct: 310 RRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEAVAAHPPP 369
Query: 517 KDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRIT 574
+ KIKY TQV PPTFV F + + L + R+L +E F G PIR+
Sbjct: 370 LVNGRRLKIKYATQVGTNPPTFVLFGNRPELLPFSYKRYLENQFREAFGFEGTPIRLE 427
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 378 bits (974), Expect = e-126
Identities = 170/477 (35%), Positives = 250/477 (52%), Gaps = 57/477 (11%)
Query: 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDS 177
P V I+GRPNVGKS LFNRL RR A+V +TP VTRD G A+ F ++D+
Sbjct: 1 MSTPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPG--VTRDRIYGDAEWLGREFILIDT 58
Query: 178 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP 237
GL+ + + + + +F++D R G+ P D E+ K LR+ KP
Sbjct: 59 GGLDDGDEDE-LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR---SKKP 114
Query: 238 -IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYML 296
I+ +NK ++L A E LGFG+P+ ISAE G G+ +L +A+ L
Sbjct: 115 VILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAV--------L 161
Query: 297 RVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 356
+L E++E P+++AI+GRPNVGKS+L+NA+L E+RV+V A
Sbjct: 162 ELL-----------PPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA 210
Query: 357 GLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-----EKGPASLSVMQSRKNLMRAHVVAL 411
G TRDS+ + FE GR L+DTAG ++ K EK SV ++ K + RA VV L
Sbjct: 211 GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEK----YSVARTLKAIERADVVLL 266
Query: 412 VLDAEE------VR----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI 461
V+DA E +R E GRG+V++VNK DL+ ++ A + K+ +++ +
Sbjct: 267 VIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLV--EEDEATMEEFKK----KLRRKL 320
Query: 462 PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRH-SWKDQS 520
P + P+VF SAL G+G + + + Y+ R+ TS LNR L + +H
Sbjct: 321 PFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPPPVRYG 380
Query: 521 AQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRS 577
+ KIKY TQV PPTFV F + K L + R+L L++ F G PIR+ +
Sbjct: 381 RRLKIKYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKK 437
|
Length = 444 |
| >gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 2e-66
Identities = 157/480 (32%), Positives = 226/480 (47%), Gaps = 75/480 (15%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
LP V ++GRPNVGKS L NR++ RREA+V + P VTRD A+ RF V+D+ G
Sbjct: 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPG--VTRDRVSYDAEWNGRRFTVVDTGG 95
Query: 180 LETEATSGSILDRTAGMTANVLAKTQFAI-------FMIDVRSGLHPLDLEVGKWLRKHA 232
E +A G+ A+V + + A+ F++D G D V + LR+
Sbjct: 96 WEPDAK---------GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSG 146
Query: 233 PQIKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291
KP I+A NK + AA LG G+P +SA G G+ +L +A+
Sbjct: 147 ---KPVILAANKVDD-----ERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAV---- 194
Query: 292 EDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351
L L + S P ++A+VG+PNVGKS+LLN L E+R +
Sbjct: 195 ----LAALPE------------VPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSV 238
Query: 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPASLSVMQSRKNLMRAHVVA 410
V AG T D V E G+T VDTAG +R K+ G + +++ + A V
Sbjct: 239 VDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAV 298
Query: 411 LVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 460
+++DA E +E GR LV+ NK DL+ + L + EI
Sbjct: 299 VLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLER--------EIDRE 350
Query: 461 IPQVTGIPVVFTSALEGR--GRIA-VMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWK 517
+ QV P V SA GR ++ + +++ W R+PT RLN WL +++
Sbjct: 351 LAQVPWAPRVNISAKTGRAVDKLVPALETALES---WDTRIPTGRLNAWLGELVAATPPP 407
Query: 518 DQSA-QPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
+ QP+I + TQ RPPTFV F +G L RFL + L+E F G PIRI+ R
Sbjct: 408 VRGGKQPRILFATQASTRPPTFVLFTTGF--LEAGYRRFLERRLRETFGFEGSPIRISVR 465
|
Length = 472 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 220 bits (561), Expect = 8e-63
Identities = 148/478 (30%), Positives = 230/478 (48%), Gaps = 67/478 (14%)
Query: 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSA 178
+ V I+GRPNVGKS L NR++ RREA+V +TP VTRD A+ FK++D+
Sbjct: 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPG--VTRDRVSYDAEWAGTDFKLVDTG 331
Query: 179 GLETEATSGSILDRTAGMTANVLAKTQFA-------IFMIDVRSGLHPLDLEVGKWLRKH 231
G E + G+ + + ++ Q A +F++D + GL D + + LR+
Sbjct: 332 GWEADVE---------GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR- 381
Query: 232 APQIKPI-VAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 290
KP+ +A+NK + + AAE LG G+P ISA G G+ +L
Sbjct: 382 --AGKPVVLAVNKIDD-----QASEYDAAEFWKLGLGEPYPISAMHGRGVGDLL------ 428
Query: 291 VEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRV 350
D L L + T +P ++A+VGRPNVGKS+LLN L E+R
Sbjct: 429 --DEALDSL-----KVAEKTSGFLTPSG-----LRRVALVGRPNVGKSSLLNQLTHEERA 476
Query: 351 LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPASLSVMQSRKNLMRAHVV 409
+V AG TRD V E G +DTAG +R+ + G S ++++ + R+ +
Sbjct: 477 VVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELA 536
Query: 410 ALVLDAEE------VR----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459
+ DA + ++ AV+ GR LV++ NK DL+ + ++ + + +T
Sbjct: 537 LFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFR--------RQRLERLWKT 588
Query: 460 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQ 519
+VT V SA G + + + + W R+PT +LN +L K+ H +
Sbjct: 589 EFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQAEHPHPLR 648
Query: 520 SA-QPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576
QP+I + TQ RPP FV F +G L RFL +SL+E+F G PI+I+
Sbjct: 649 GGKQPRILFATQASTRPPRFVIFTTG--FLEHGYRRFLERSLREEFGFEGSPIQISVN 704
|
Length = 712 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 3e-58
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 17/179 (9%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383
P+++AI+GRPNVGKS+LLNALL E+RV+V AG TRDS+ V FEY G+ L+DTAG
Sbjct: 2 PIKIAIIGRPNVGKSSLLNALLGEERVIVSDIAGTTRDSIDVPFEYDGQKYTLIDTAGIR 61
Query: 384 QREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEE----------VRAVEEGRGLVVIVN 432
++ K +G SV+++ K + RA VV LVLDA E +EEG+ L+++VN
Sbjct: 62 KKGKVTEGIEKYSVLRTLKAIERADVVLLVLDASEGITEQDLRIAGLILEEGKALIIVVN 121
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491
K DL+ + + + +E++ +P + P+VF SAL G+G + + + Y
Sbjct: 122 KWDLVEKDEKT------MKEFEKELRRKLPFLDYAPIVFISALTGQGVDKLFDAIKEVY 174
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 1e-54
Identities = 66/166 (39%), Positives = 94/166 (56%), Gaps = 13/166 (7%)
Query: 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184
I+GRPNVGKS LFNRL RR+A+V +TP VTRD + G A+ G F ++D+ G+E +
Sbjct: 2 IVGRPNVGKSTLFNRLTGRRDAIVSDTP--GVTRDRKYGEAEWGGREFILIDTGGIEPD- 58
Query: 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVAMNK 243
I + + +F++D R GL P D E+ K+LRK KP I+ +NK
Sbjct: 59 -DEGISKEIREQAEIAIEEADVILFVVDGREGLTPADEEIAKYLRKSK---KPVILVVNK 114
Query: 244 CESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289
+++ AAE LGFG+PI ISAE G G+ +L +A+
Sbjct: 115 IDNIKEEE-----EAAEFYSLGFGEPIPISAEHGRGIGDLLDAILE 155
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 4e-27
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 36/167 (21%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++ I G+PNVGKS+LLNAL DR +V AG TRD + + G V L+DTAG L
Sbjct: 4 IKVVIAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEEEIDLGGIPVRLIDTAG-L- 61
Query: 385 REK----EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVE--------EGRGLVVIVN 432
RE EK + + ++R+ + A +V LV+DA E E + ++V++N
Sbjct: 62 RETEDEIEK----IGIERAREAIEEADLVLLVVDASEGLDEEDLEILELPAKKPVIVVLN 117
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
K DLLS + + + G P++ SA G G
Sbjct: 118 KSDLLSDAEGISE------------------LNGKPIIAISAKTGEG 146
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 1e-25
Identities = 58/167 (34%), Positives = 82/167 (49%), Gaps = 37/167 (22%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L++ I GRPNVGKS+LLNALL E+R +V AG TRD + H G + L+DTAG
Sbjct: 216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGI-- 273
Query: 385 REK----EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE--------GRGLVVIVN 432
RE EK + + +SR+ + A +V LVLDA E E+ + ++V++N
Sbjct: 274 RETDDEVEK----IGIERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLN 329
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
K DL + + + G PV+ SA G G
Sbjct: 330 KADLTG-------------------EIDLEEENGKPVIRISAKTGEG 357
|
Length = 449 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 3e-25
Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 27/165 (16%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383
L++ I+GRPNVGKS+LLNALL DR +V AG TRD + G V LVDTAG
Sbjct: 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAG-- 274
Query: 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE---------VRAVEEGRGLVVIVNKM 434
RE + + + +++K + A +V VLDA + + + + + ++V++NK
Sbjct: 275 IRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKA 334
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
DL V + G ++ SA G G
Sbjct: 335 DL----------------VSKIELESEKLANGDAIISISAKTGEG 363
|
Length = 454 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-24
Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 23/162 (14%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFE-YQGRTVYLVDTAGWLQRE 386
AI GRPNVGKS+LLNALL ++ +V P G TRD VR +E V L+DT G L E
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPG-LDEE 59
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEE---------VRAVEEGRGLVVIVNKMDLL 437
G V ++R+ RA +V LV+D++ E G+ +++++NK+DL+
Sbjct: 60 GGLGR--ERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGLLRERGKPVLLVLNKIDLV 117
Query: 438 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ L + K + +PV+ SAL G G
Sbjct: 118 PESEEEELLRERKLE----------LLPDLPVIAVSALPGEG 149
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-22
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 13/117 (11%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
A+VGRPNVGKSTL+NAL +V G TRD + GR + LVDT G L
Sbjct: 3 ALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGL-GRQIILVDTPG-LIEGA 60
Query: 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV--RAVEE---------GRGLVVIVNK 433
+G + + + A ++ LV+DA E EE + +++++NK
Sbjct: 61 SEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPKKPIILVLNK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 8e-21
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
V ++GRPNVGKS L N L + A+V + P TRD G+ LG + ++D+ GL
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDYP--GTTRDPILGVLGLGR-QIILVDTPGLI 57
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
A+ G ++ + + + ++D GL D E+ + L K + I+ +
Sbjct: 58 EGASEGKGVEGFN-RFLEAIREADLILLVVDASEGLTEDDEEILEELEKLP-KKPIILVL 115
Query: 242 NK 243
NK
Sbjct: 116 NK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 3e-20
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQR 385
+VGR VGKS+LLNALL + V G TRD E + LVDT G
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPG--LD 58
Query: 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDA------EEVRAVEEGRG------LVVIVNK 433
E +R L A ++ LV+D+ E+ + + R ++++ NK
Sbjct: 59 EFG---GLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIILVGNK 115
Query: 434 MDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
+DLL R+ L + + A ++ G+PV SA G G + ++I+
Sbjct: 116 IDLLEEREVEELLRLEELA----------KILGVPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-18
Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR-FKVLDSAGLETE 183
I GRPNVGKS+L N L+ + +V P TRD +L L ++D+ GL+ E
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIVSPIP--GTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59
Query: 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 243
G V + + ++D S L P++ E ++ +NK
Sbjct: 60 GGLGRERVE---EARQVADRADLVLLVVD--SDLTPVEEEAKL-GLLRERGKPVLLVLNK 113
Query: 244 CESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
+ + + +L IA+SA G G+ EL + +
Sbjct: 114 IDLVPESEEEELLRERKLELLPDLPVIAVSALPGEGIDELRKKI 157
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 3e-18
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
AIVGRPNVGKSTL N L +V G+TRD E+ GR L+DT G E
Sbjct: 1 AIVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKYGEAEWGGREFILIDTGGI---EP 57
Query: 388 EKGPASLSVM-QSRKNLMRAHVVALVLDA-EEVRAVEE---------GRGLVVIVNKMD 435
+ S + Q+ + A V+ V+D E + +E + ++++VNK+D
Sbjct: 58 DDEGISKEIREQAEIAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKID 116
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 1e-17
Identities = 56/170 (32%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL- 180
V+I G+PNVGKS+L N L R A+V + TRD+ E LG + +++D+AGL
Sbjct: 5 KVVIAGKPNVGKSSLLNALAGRDRAIVSDIAG--TTRDVIEEEIDLGGIPVRLIDTAGLR 62
Query: 181 ETEATSGSILDRTAGM--TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI 238
ETE +++ G+ + + + ++D GL DLE+ + K I
Sbjct: 63 ETE----DEIEK-IGIERAREAIEEADLVLLVVDASEGLDEEDLEILELPAK----KPVI 113
Query: 239 VAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
V +NK + L A L IAISA+TG G+ EL EAL
Sbjct: 114 VVLNKSD--------LLSDAEGISELNGKPIIAISAKTGEGIDELKEALL 155
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 5e-17
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 11/122 (9%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383
+LAIVG PNVGKS+LLNALL++DR +V G TRD V FE G + L+DTAG
Sbjct: 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGI- 261
Query: 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE---------VRAVEEGRGLVVIVNKM 434
RE L + +S K + +A +V VLDA + + + + ++++NK+
Sbjct: 262 -REHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKI 320
Query: 435 DL 436
DL
Sbjct: 321 DL 322
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 5e-16
Identities = 53/166 (31%), Positives = 76/166 (45%), Gaps = 29/166 (17%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWL 383
L + I GR N GKS+L+NAL +D +V G T D V E V L+DTAG L
Sbjct: 7 LHIGIFGRRNAGKSSLINALTGQDIAIVSDVPGTTTDPVYKAMELLPLGPVVLIDTAG-L 65
Query: 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAE------EVRAVEEGRG----LVVIVNK 433
E E G L V ++R+ L + + LV+DA E+ +EE + +V++NK
Sbjct: 66 DDEGELG--ELRVEKTREVLDKTDLALLVVDAGVGPGEYELELIEELKERKIPYIVVINK 123
Query: 434 MDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+DL ++ G+P +F SAL G G
Sbjct: 124 IDLGEESAELEKLEKKF---------------GLPPIFVSALTGEG 154
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 77.8 bits (193), Expect = 3e-15
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 29/173 (16%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYN---TPDDHVTRDIREGLAKLGDLRFKVLDSA 178
V+I GRPNVGKS+L N L+ A+V + T TRD+ E L + +++D+A
Sbjct: 217 KVVIAGRPNVGKSSLLNALLGEERAIVTDIAGT-----TRDVIEEHINLDGIPLRLIDTA 271
Query: 179 GL-ETEATSGSILDRTAGM--TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI 235
G+ ET+ I G+ + + + + ++D L D E + +
Sbjct: 272 GIRETDDEVEKI-----GIERSREAIEEADLVLLVLDASEPLTEEDDE----ILEELKDK 322
Query: 236 KPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
IV +NK + L G G I ISA+TG G+ EL EA++
Sbjct: 323 PVIVVLNKAD--------LTGEIDLEEENGKPV-IRISAKTGEGIDELREAIK 366
|
Length = 449 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 4e-15
Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 23/171 (13%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL-E 181
V+IIGRPNVGKS+L N L+ R A+V + TRD+ E L + +++D+AG+ E
Sbjct: 220 VVIIGRPNVGKSSLLNALLGRDRAIVTDIAG--TTRDVIEEDINLNGIPVRLVDTAGIRE 277
Query: 182 TEATSGSILDRTAGM--TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV 239
T+ +++R G+ + + +F++D L DL + L I IV
Sbjct: 278 TD----DVVER-IGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-IELLPKKKPI--IV 329
Query: 240 AMNKCESLHNGTGSLAGAAA-ESLMLGFGDP-IAISAETGLGMTELYEALR 288
+NK + L ES L GD I+ISA+TG G+ L EA++
Sbjct: 330 VLNKAD--------LVSKIELESEKLANGDAIISISAKTGEGLDALREAIK 372
|
Length = 454 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-15
Identities = 48/168 (28%), Positives = 72/168 (42%), Gaps = 26/168 (15%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQ 384
+ IVG PNVGKSTLLN LL + + G TR+ V E G+T L+DTAG
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG--- 60
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------RAVEEGRGLVVIVNKMD 435
+E L +L +V LVLD EE+ E G ++++ NK+D
Sbjct: 61 QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKID 120
Query: 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483
L + + + ++ G P++ SA G+ +
Sbjct: 121 L------------RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSA 156
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 6e-15
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 9/165 (5%)
Query: 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKV--LDSAGLET 182
++GR VGKS+L N L+ V + P TRD + +L + K+ +D+ GL+
Sbjct: 2 VVGRGGVGKSSLLNALLGGEVGEVSDVP--GTTRDPDVYVKELDKGKVKLVLVDTPGLDE 59
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
G + +L + ++D D ++ R I I+ N
Sbjct: 60 FGGLGR-----EELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIILVGN 114
Query: 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
K + L E + +SA+TG G+ EL+E L
Sbjct: 115 KIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKL 159
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-13
Identities = 57/167 (34%), Positives = 82/167 (49%), Gaps = 19/167 (11%)
Query: 125 IIGRPNVGKSALFNRLIRRREALVYNTP---DDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
I GR N GKS+L N L + A+V + P D V + + L LG + +D+AGL+
Sbjct: 11 IFGRRNAGKSSLINALTGQDIAIVSDVPGTTTDPVYKAME--LLPLGPVVL--IDTAGLD 66
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
E G + R T VL KT A+ ++D G +LE+ + L++ +I IV +
Sbjct: 67 DEGELGEL--RVE-KTREVLDKTDLALLVVDAGVGPGEYELELIEELKER--KIPYIVVI 121
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDP-IAISAETGLGMTELYEAL 287
NK + A E L FG P I +SA TG G+ EL EA+
Sbjct: 122 NKIDLGEE------SAELEKLEKKFGLPPIFVSALTGEGIDELKEAI 162
|
This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391 |
| >gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-12
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 309 STQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFE 368
+D+ E E +A+VGRPNVGKSTL+N +L +V G+TRD V E
Sbjct: 23 DDEDLAELEAAEGGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAE 82
Query: 369 YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDA--------EEVRA 420
+ GR +VDT GW KG + Q+ + A V V+DA E V
Sbjct: 83 WNGRRFTVVDTGGWEP--DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVAR 140
Query: 421 V--EEGRGLVVIVNKMD 435
V G+ +++ NK+D
Sbjct: 141 VLRRSGKPVILAANKVD 157
|
Length = 472 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 3e-12
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR--VHFE-YQGRTVYLVDTAGWLQ 384
AIVGRPNVGKSTLLNAL+ + +V P+ TR +R V + Q + VDT G +
Sbjct: 9 AIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQ---IIFVDTPGIHK 65
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDA-----EEVRAVEE-----GRGLVVIVNKM 434
++ A + +L +V V+DA + E +++++NK+
Sbjct: 66 PKRALNRAMNKA--AWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKI 123
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
DL+ KE + ++ + + +V SAL+G ++ +
Sbjct: 124 DLVKD----------KEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAK 168
|
Length = 292 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 9e-12
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 30/176 (17%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR--VHFE-YQGRTVYLVDTAGWLQ 384
AI+GRPNVGKSTLLNAL+ + +V P+ TR+ +R + Q + VDT G +
Sbjct: 7 AIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQ---IIFVDTPG-IH 62
Query: 385 REKEKGPASLSVMQS-RKNLMRAHVVALVLDA-----EEVRAV-----EEGRGLVVIVNK 433
+ K+K ++++ L +V V+DA E + + +++++NK
Sbjct: 63 KPKKK--LGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFILELLKKSKTPVILVLNK 120
Query: 434 MDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
+DL+ KE + ++ + + SAL+G ++ +++
Sbjct: 121 IDLVKD----------KEDLLPLLEKLKELHPFAEIFPISALKGENVDELLEYIVE 166
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-11
Identities = 47/192 (24%), Positives = 74/192 (38%), Gaps = 43/192 (22%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL- 383
L +A+VG PNVGK+TL NAL VG G+T + +Y+G + +VD G
Sbjct: 4 LTVALVGNPNVGKTTLFNALTGA-NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYS 62
Query: 384 -----------QREKEKGPASL--SVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVI 430
+ +G L +V+ + NL R + L L E+ G +++
Sbjct: 63 LTAYSEDEKVARDFLLEGKPDLIVNVVDA-TNLERN--LYLTLQLLEL-----GIPMILA 114
Query: 431 VNKMDLLSGR----QNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQ 486
+N +D R L K + G+PVV T A G G +
Sbjct: 115 LNMIDEAKKRGIRIDIEKLSKLL----------------GVPVVPTVAKRGEGLEELKRA 158
Query: 487 VIDTYQKWCLRL 498
+I+ +
Sbjct: 159 IIELAESKTTPR 170
|
Length = 653 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 317 EDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYL 376
E K +AIVGRPNVGKSTL+N +L +V G+TRD V E+ G L
Sbjct: 268 EKAGPKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKL 327
Query: 377 VDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDA-------EEVRAV---EEGRG 426
VDT GW +G S Q++ + A V V+D +E G+
Sbjct: 328 VDTGGW--EADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKP 385
Query: 427 LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQ 486
+V+ VNK+D + ++A + ++ P I SA+ GRG ++ +
Sbjct: 386 VVLAVNKIDDQASEYDAAEFWKLGLGEPYPI---------------SAMHGRGVGDLLDE 430
Query: 487 VIDTYQK 493
+D+ +
Sbjct: 431 ALDSLKV 437
|
Length = 712 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-11
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 16/170 (9%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGL 180
++I+G PNVGKS L NRL+ + ++ P TR+ + + +F +LD+AG
Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKISITEYKPG--TTRNYVTTVIEEDGKTYKFNLLDTAGQ 61
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV- 239
E + R + L I ++DV L E + HA PI+
Sbjct: 62 EDYDAIRRLYYR---AVESSLRVFDIVILVLDVEEILEKQTKE----IIHHAESGVPIIL 114
Query: 240 AMNKCESLHNGT-GSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
NK + +A A+ L I +SAETG + ++ +
Sbjct: 115 VGNKIDLRDAKLKTHVAFLFAK---LNGEPIIPLSAETGKNIDSAFKIVE 161
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 5e-11
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 46/191 (24%)
Query: 328 AIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAG---- 381
A GR NVGKS+L+NAL + G T+ ++F + G LVD G
Sbjct: 3 AFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQ---LINF-FNVGDKFRLVDLPGYGYA 58
Query: 382 ---WLQREKEKGPASLSVM----QSRKNLMRAHVVALVLDA------EEVR----AVEEG 424
REK ++ ++R+NL V L++DA ++ E G
Sbjct: 59 KVSKEVREKWGK-----LIEEYLENRENLKG---VVLLIDARHGPTPIDLEMLEFLEELG 110
Query: 425 RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484
++++ K D L + + + K++KE + PV+ S+ +G G I +
Sbjct: 111 IPFLIVLTKADKLKKSELAKVLKKIKEELNLFNIL-------PPVILFSSKKGTG-IDEL 162
Query: 485 HQVIDTYQKWC 495
+I +W
Sbjct: 163 RALIA---EWL 170
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 6e-11
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184
IIGRPNVGKS+L N L+ +V + TRD + + ++ ++D+AG+ +
Sbjct: 7 IIGRPNVGKSSLLNALLGEERVIVSDIAG--TTRDSIDVPFEYDGQKYTLIDTAGIRKKG 64
Query: 185 TSGSILDRTAGM-TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 243
+++ + + T + + + ++D G+ DL + + + + I+ +NK
Sbjct: 65 KVTEGIEKYSVLRTLKAIERADVVLLVLDASEGITEQDLRIAGLILEEGKAL--IIVVNK 122
Query: 244 CESLHNGTGSLAGAAAESL--MLGFGD--PIA-ISAETGLGMTELYEA 286
+ L + L L F D PI ISA TG G+ +L++A
Sbjct: 123 WD-LVEKDEKTMKEFEKELRRKLPFLDYAPIVFISALTGQGVDKLFDA 169
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 6e-11
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 16/172 (9%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V IIGRPNVGKS L N L+ ++ ++V +P TR+ G+ D + +D+ G+
Sbjct: 6 VAIIGRPNVGKSTLLNALVGQKISIV--SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63
Query: 183 EATS-GSILDRTAGMT---ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP- 237
G + + A +++ +F++D + D + L P
Sbjct: 64 PKKKLGERMVKAAWSALKDVDLV------LFVVDASEWIGEGDEFI---LELLKKSKTPV 114
Query: 238 IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289
I+ +NK + + + L + F + ISA G + EL E +
Sbjct: 115 ILVLNKIDLVKDKEDLLPLLEKLKELHPFAEIFPISALKGENVDELLEYIVE 166
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 28/163 (17%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR--VHF-EYQGRTVYLVDTAGWLQ 384
AI+GRPNVGKSTLLNAL+ + +V P+ TR+ +R V Q + VDT G +
Sbjct: 10 AIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQ---IIFVDTPG-IH 65
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE----------GRGLVVIVNKM 434
+ K + +R L ++ V+DA+E + ++++VNK+
Sbjct: 66 KPKHALGELM-NKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKI 124
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 477
D + K V + ++ ++P +V SAL+G
Sbjct: 125 DKVK-------PKTVLLKLIAFLKKLLPF---KEIVPISALKG 157
|
Length = 298 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V IIGRPNVGKS L N L+ ++ ++V P TR+ G+ + + +D+ G+
Sbjct: 9 VAIIGRPNVGKSTLLNALVGQKISIVSPKP--QTTRNRIRGIVTTDNAQIIFVDTPGIHK 66
Query: 183 EATSGSILDRTAGMTANVLAKTQFA---IFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV 239
+ L M + + +F++D G P D + + L+K + I+
Sbjct: 67 PKHA---LGEL--MNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVIL 119
Query: 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289
+NK + + T L A +L F + + ISA G + L E ++
Sbjct: 120 VVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKE 169
|
Length = 298 |
| >gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 8e-10
Identities = 49/186 (26%), Positives = 72/186 (38%), Gaps = 47/186 (25%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQR- 385
+VG PNVGKSTLL+AL V + T + FE+ G + ++D G L
Sbjct: 1 GLVGLPNVGKSTLLSALTSAK-VEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPGLLDGA 59
Query: 386 --EKEKGPASLSVMQSRKNLMRAHVVALVLDA----------------EEVRAVEEGRGL 427
+ G L+ +L R+ ++ V+DA EEV
Sbjct: 60 SEGRGLGEQILA------HLYRSDLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLKN 113
Query: 428 ---VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484
+++ NK+D+ S L + GIPVV TSAL G +
Sbjct: 114 KPEMIVANKIDMASENNLKRLKLDKLK-------------RGIPVVPTSALTRLG----L 156
Query: 485 HQVIDT 490
+VI T
Sbjct: 157 DRVIRT 162
|
The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167 |
| >gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 1e-09
Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 35/183 (19%)
Query: 325 LQLAIVGRPNVGKSTLLNAL--LQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382
+ +A+VG PNVGK+TL NAL R VG G+T + F+Y+G + +VD G
Sbjct: 1 ITIALVGNPNVGKTTLFNALTGA---RQHVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGT 57
Query: 383 --LQREKEKGPASLSVMQSRKNLM--RAHVVALVLDAEE--------VRAVEEGRGLVVI 430
L P S +R L+ + V+ V+DA ++ +E G +VV
Sbjct: 58 YSL------SPYSEEEKVARDYLLEEKPDVIINVVDATNLERNLYLTLQLLELGIPVVVA 111
Query: 431 VNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490
+N MD + K++ E + G+PVV TSA +G G + +I+
Sbjct: 112 LNMMDEAEKKGIKIDIKKLSELL------------GVPVVPTSARKGEGIDELKDAIIEV 159
Query: 491 YQK 493
+
Sbjct: 160 AEG 162
|
Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190 |
| >gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 15/194 (7%)
Query: 110 VDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRRE-ALVYNTPDDHVTRDIREGLAKLG 168
D + + LP + GR NVGKS+L N L ++ A TP T+ I ++
Sbjct: 14 PDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG--RTQLINF--FEVD 69
Query: 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQ---FAIFMIDVRSGLHPLDLEVG 225
D +++D G + ++ + L K + +ID R LD E+
Sbjct: 70 D-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMI 128
Query: 226 KWLRKHAPQIKPIVAMNKCESLHNG-TGSLAGAAAESLMLGFGDP---IAISAETGLGMT 281
++L + I IV + K + L AE L D + S+ G+
Sbjct: 129 EFLLELG--IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGID 186
Query: 282 ELYEALRPSVEDYM 295
EL + +++
Sbjct: 187 ELKAKILEWLKEAK 200
|
Length = 200 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 51/176 (28%), Positives = 71/176 (40%), Gaps = 46/176 (26%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVL---VGPE-AGLTRDSVRVHFEYQGRTVYLVDTAG- 381
LA+VG + GKSTLLNALL E+ VL V P A +T + + V LVDT G
Sbjct: 3 LAVVGEFSAGKSTLLNALLGEE-VLPTGVTPTTAVITVLRYGL-----LKGVVLVDTPGL 56
Query: 382 ---WLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE------EVRAVEE-----GRGL 427
+ + L RA V VL A+ E ++E G+ +
Sbjct: 57 NSTIEHHTEI----------TESFLPRADAVIFVLSADQPLTESEREFLKEILKWSGKKI 106
Query: 428 VVIVNKMDLLS--GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS---ALEGR 478
++NK+DLLS + Y R + V + + S ALE R
Sbjct: 107 FFVLNKIDLLSEEELEEVLEYSREELGVLELG------GGEPRIFPVSAKEALEAR 156
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-09
Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 37/181 (20%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
A+VG PNVGK+TL NAL R VG G+T + F+ G+ + +VD G
Sbjct: 1 ALVGNPNVGKTTLFNALTG-ARQKVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGTY---- 55
Query: 388 EKGPASLSVMQ-----SRKNLM--RAHVVALVLDAEEVR--------AVEEGRGLVVIVN 432
SL+ +R L+ ++ V+DA + +E G +VV +N
Sbjct: 56 -----SLTPYSEDEKVARDFLLGEEPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALN 110
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492
+D R ++ E + G+PVV TSA +G G ++ + +
Sbjct: 111 MIDEAEKRGIKIDLDKLSELL------------GVPVVPTSARKGEGIDELLDAIAKLAE 158
Query: 493 K 493
Sbjct: 159 S 159
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
+ I+G PNVGKS+L N L+++ A+V + TRD+ EG +L + K+LD+AG+
Sbjct: 206 LAIVGSPNVGKSSLLNALLKQDRAIVSDIKG--TTRDVVEGDFELNGILIKLLDTAGIRE 263
Query: 183 EATSGSILDRTAGMTANVLAKT-QFAIFMIDVRSGLHPLD 221
A ++R + K I+++D L D
Sbjct: 264 HA---DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDD 300
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442 |
| >gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-09
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR-VHFEYQGRTVYLVDTAGWLQRE 386
AI+GRPNVGKSTLLN L + + P+A TR+ + +H + ++ +DT G+ E
Sbjct: 4 AILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIF-IDTPGF--HE 60
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSALY 446
K+ L + ++R + ++ V+D+++ E ++ K+ L
Sbjct: 61 KKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGE-----FVLTKLQNLKRPVVLTRN 115
Query: 447 K---RVKEAVPQEIQTVIPQVTGIPVVFTSALEG 477
K + K+ + I +V SAL G
Sbjct: 116 KLDNKFKDKLLPLIDKYAILEDFKDIVPISALTG 149
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 6e-09
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 381
PL+ +VG PNVGKSTL+N L + VG + G+TR + + L+DT G
Sbjct: 115 PLRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTRGQQWIRIGPN---IELLDTPG 169
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 9e-09
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRR-REALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
V GR NVGKS+L N L R + A TP T+ I +GD +F+++D G
Sbjct: 2 VAFAGRSNVGKSSLINALTNRKKLARTSKTPG--RTQLINF--FNVGD-KFRLVDLPGYG 56
Query: 182 TEATSGSILDRTAGMTANVLAKTQ---FAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI 238
S + ++ + L + + +ID R G P+DLE+ ++L + I +
Sbjct: 57 YAKVSKEVREKWGKLIEEYLENRENLKGVVLLIDARHGPTPIDLEMLEFLEEL--GIPFL 114
Query: 239 VAMNKCESL-HNGTGSLAGAAAESLMLGFGDP--IAISAETGLGMTELYEAL 287
+ + K + L + + E L L P I S++ G G+ EL +
Sbjct: 115 IVLTKADKLKKSELAKVLKKIKEELNLFNILPPVILFSSKKGTGIDELRALI 166
|
The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170 |
| >gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 34/193 (17%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALL-QEDRVLVGPEAGLTRDSVRVHFEYQGRTV 374
PEDD ++A GR NVGKS+L+NAL Q++ G T+ + FE +
Sbjct: 20 PEDD----LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQ--LINFFEVDDE-L 72
Query: 375 YLVDTAGW-----LQREKEK-GPASLSVMQSRKNLMRAHVVALVLDA--------EEV-- 418
LVD G+ + KEK ++ R NL V L++DA E+
Sbjct: 73 RLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKG---VVLLIDARHPPKDLDREMIE 129
Query: 419 RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 478
+E G ++V++ K D L + + +V E + + P VV S+L+ +
Sbjct: 130 FLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP-----PPDD-QWVVLFSSLKKK 183
Query: 479 GRIAVMHQVIDTY 491
G I + I +
Sbjct: 184 G-IDELKAKILEW 195
|
Length = 200 |
| >gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 31/166 (18%)
Query: 331 GRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ----RE 386
G PNVGKSTL NAL VG G+T + +QG + +VD G
Sbjct: 1 GNPNVGKSTLFNALTGA-NQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL 59
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEVR--------AVEEGRGLVVIVNKMDLLS 438
+E+ V + + +V V+DA + +E G +++ +N +D +
Sbjct: 60 EEE------VARDYLLNEKPDLVVNVVDASNLERNLYLTLQLLELGIPMILALNLVD-EA 112
Query: 439 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484
++ R+ E +E G+PVV TSA EGRG +
Sbjct: 113 EKKGI----RIDEEKLEER-------LGVPVVPTSATEGRGIERLK 147
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 4e-08
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRD-IREGLAKLGDLRFKVLDSAGLE 181
V I+GRPNVGKS L N L+ ++ ++V P TR IR G+ D + +D+ G+
Sbjct: 8 VAIVGRPNVGKSTLLNALVGQKISIVSPKP--QTTRHRIR-GIVTEDDAQIIFVDTPGIH 64
Query: 182 TEATS-GSILDRTAGMT---ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP 237
+ +++ A + +++ +F++D + P D + + L+K +
Sbjct: 65 KPKRALNRAMNKAAWSSLKDVDLV------LFVVDADEKIGPGDEFILEKLKK--VKTPV 116
Query: 238 IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289
I+ +NK + + + L S ++ F + + ISA G + EL + +
Sbjct: 117 ILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAK 168
|
Length = 292 |
| >gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 8e-08
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 36/178 (20%)
Query: 328 AIVGRPNVGKSTLLNALLQ-----------EDRVLVGPEA----GLTRDSVRVHFEYQGR 372
++G + GK+TL +LL ++ L + G+T + V FE+ R
Sbjct: 3 GVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPKR 62
Query: 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE---------VR-AVE 422
+ +DT G KE L+ LV+DA E + A+
Sbjct: 63 RINFIDTPGHEDFSKETV-RGLAQAD---------GALLVVDANEGVEPQTREHLNIALA 112
Query: 423 EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGR 480
G ++V VNK+D + + + +KE + T + +P++ SAL G G
Sbjct: 113 GGLPIIVAVNKIDRVGEEDFDEVLREIKELLKLIGFTFLKG-KDVPIIPISALTGEGI 169
|
The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
M++G PNVGKS L NRL ++ A V N P VTR + ++G ++LD+ G
Sbjct: 118 AMVVGIPNVGKSTLINRLRGKKVAKVGNKPG--VTRGQQ--WIRIGP-NIELLDTPG 169
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 32/159 (20%)
Query: 226 KWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTEL 283
+ K I+ +NK + + L AE L ISA G G+ +L
Sbjct: 18 PDIEVLINEKNKKLIMVLNKADLVPKEV--LRKWVAELSELYGTKTFFISATNGQGILKL 75
Query: 284 YEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNA 343
+ K +++ +VG PNVGKS+ +NA
Sbjct: 76 KAEITKQKLKLK-------------------------YKKGIRVGVVGLPNVGKSSFINA 110
Query: 344 LLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382
LL + ++ VG G T+ V + +YL DT G
Sbjct: 111 LLNKFKLKVGSIPGTTKLQQDVKL---DKEIYLYDTPGI 146
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146 |
| >gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 4e-07
Identities = 44/190 (23%), Positives = 73/190 (38%), Gaps = 42/190 (22%)
Query: 327 LAIVGRPNVGKSTLLNALLQE---------------DRVLVGPEAGLTRDSVRVHFEYQG 371
+ I+G + GK+TL +ALL D++ E G+T V FE +
Sbjct: 6 IGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSFETKK 65
Query: 372 RTVYLVDTAGW--LQREKEKGPASLSVMQSRKNLMRAHVVALVLDA--------EEV--R 419
R + ++DT G +E S LV+DA E
Sbjct: 66 RLINIIDTPGHVDFTKEMI---RGASQA---------DGAILVVDAVEGVMPQTREHLLL 113
Query: 420 AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
A G ++V +NK+D + + L + V+E + ++ +PVV SAL G G
Sbjct: 114 AKTLGVPIIVFINKIDRVDDAE---LEEVVEEISRELLEKYGFGGETVPVVPGSALTGEG 170
Query: 480 RIAVMHQVID 489
++ +
Sbjct: 171 IDELLEALDL 180
|
This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388
+VG PNVGKSTL+N LL + G T+ + + +YL+DT G + + +
Sbjct: 137 VVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGIIPPKFD 193
Query: 389 KGPASLSVMQSRKNLMRA-HVVALVLDAEEV 418
L L + VL A+EV
Sbjct: 194 DDELVL------LKLAPKGEIKDPVLPADEV 218
|
Length = 322 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-07
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
++G+ GKS+L NAL + VG TR + ++ G + L+D G +R +
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERGR 60
Query: 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEE 417
R+ L A +V +LDA++
Sbjct: 61 RD---REYEELYRRLLPEADLVLWLLDADD 87
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 9e-07
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 23/101 (22%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG--- 179
MI+G PNVGKS L NRL ++ A V N P VT+ + KL D ++LD+ G
Sbjct: 121 AMIVGIPNVGKSTLINRLAGKKVAKVGNRPG--VTKGQQ--WIKLSD-GLELLDTPGILW 175
Query: 180 --LETE------ATSGSILDRTAGMTANVLAKTQFAIFMID 212
E + A +G+I D L A+F+++
Sbjct: 176 PKFEDQEVGLKLAATGAIKD-------EALDLEDVALFLLE 209
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 317 EDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYL 376
+ K + + +VG PNVGKS+++N+L + VG G+T+ VH + V L
Sbjct: 109 RNKGIKTSITVGVVGYPNVGKSSVINSLKRSRACNVGATPGVTKSMQEVHL---DKHVKL 165
Query: 377 VDTAG 381
+D+ G
Sbjct: 166 LDSPG 170
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Query: 95 GVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDD 154
G + D + L + + L V ++GRPNVGKS+L N+L A+V +
Sbjct: 425 GDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAG- 483
Query: 155 HVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGM-TANVLAKTQFAIFMIDV 213
TRD + + ++ + +D+AG++ + + + + T + +++ A+F+ D
Sbjct: 484 -TTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDA 542
Query: 214 RSGLHPLDLEV 224
+ DL+V
Sbjct: 543 SQPISEQDLKV 553
|
Length = 712 |
| >gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
TV ++G PNVGKS++ N L R R V TP VT+ ++E L D K+LDS G
Sbjct: 118 TVGVVGYPNVGKSSVINSLKRSRACNVGATPG--VTKSMQE--VHL-DKHVKLLDSPG 170
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 4e-06
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTR 158
MIIG PNVGKS L NRL ++ A N P VT+
Sbjct: 124 AMIIGIPNVGKSTLINRLAGKKIAKTGNRPG--VTK 157
|
Length = 287 |
| >gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG) | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 6e-06
Identities = 47/190 (24%), Positives = 80/190 (42%), Gaps = 51/190 (26%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV-HFEYQGRTVYLVDTAGWLQR 385
L I G PNVGKS+L+N L + V P T+ S+ V HF+Y+ ++DT G L R
Sbjct: 3 LVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTK-SLFVGHFDYKYLRWQVIDTPGILDR 60
Query: 386 EKEKGPASLSVMQSRKNL-MRAHVVAL---------VLD---------AEEVRAVEEGRG 426
E+ R + M+A + AL +D E++ +E +
Sbjct: 61 PLEE----------RNTIEMQA-ITALAHLRAAVLFFIDPSETCGYSIEEQLSLFKEIKP 109
Query: 427 L-----VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481
L +V++NK+DLL+ +++ + +E G V+ S L G
Sbjct: 110 LFNKPVIVVLNKIDLLTEED----LSEIEKELEKE---------GEEVIKISTLTEEGVD 156
Query: 482 AVMHQVIDTY 491
+ ++ +
Sbjct: 157 ELKNKACELL 166
|
NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167 |
| >gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 8e-06
Identities = 51/184 (27%), Positives = 75/184 (40%), Gaps = 39/184 (21%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
T++I G PNVGKS+L N+L R A P T+ + G LR++V+D+ G
Sbjct: 1 RTLVIAGYPNVGKSSLVNKLTR---AKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPG- 56
Query: 181 ETEATSGSILDR------TAGMTANVLAKTQFA---IFMIDV--RSGLHPLDLEVGKWLR 229
ILDR T M A + A +F ID G + ++ ++ +
Sbjct: 57 --------ILDRPLEERNTIEMQA-ITALAHLRAAVLFFIDPSETCG-YSIEEQLSLFK- 105
Query: 230 KHAPQIKP------IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTEL 283
+IKP IV +NK + L T + L + I IS T G+ EL
Sbjct: 106 ----EIKPLFNKPVIVVLNKIDLL---TEEDLSEIEKELEKEGEEVIKISTLTEEGVDEL 158
Query: 284 YEAL 287
Sbjct: 159 KNKA 162
|
NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167 |
| >gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 8e-06
Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 77/213 (36%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT-- 373
P DD P ++A GR NVGKS+L+NAL L R S GRT
Sbjct: 20 PPDD---GP-EIAFAGRSNVGKSSLINALTN--------RKNLARTSKT-----PGRTQL 62
Query: 374 ---------VYLVDTAGWLQREKEKGPASLSV-------------MQSRKNLMRAHVVAL 411
+ LVD G+ G A +S +++R+NL V L
Sbjct: 63 INFFEVNDKLRLVDLPGY-------GYAKVSKEEKEKWQKLIEEYLRTRENLKG---VVL 112
Query: 412 VLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ 458
++D+ R E G +++++ K D L + K+V++A+
Sbjct: 113 LIDS---RHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-- 167
Query: 459 TVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491
V+ S+L+ +G I + I +
Sbjct: 168 -------DDEVILFSSLKKQG-IDELRAAIAKW 192
|
Length = 196 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 100 HKVKPLYEKPVDFTKIDINLLP--TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVT 157
++ L E+ + K L V ++G PNVGKS L NRL+ ++ A N P T
Sbjct: 110 KALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPG--TT 167
Query: 158 RDIREGLAKLGDLRFKVLDSAGL 180
+ I+ KL D +LD+ G+
Sbjct: 168 KGIQW--IKLDD-GIYLLDTPGI 187
|
Length = 322 |
| >gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 9e-06
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 110 VDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD 169
V F K+ +V IIGRPN GKS L NR+I + ++V TP TR I G+ L D
Sbjct: 42 VKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIV--TPKVQTTRSIITGIITLKD 99
Query: 170 LRFKVLDSAGL-ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWL 228
+ + D+ G+ E + + + R A + L + +ID + + L
Sbjct: 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSS---LHSADLVLLIIDSLKSFDDITHNILDKL 156
Query: 229 RKHAPQIKPIVAMNKCE 245
R + I PI +NK +
Sbjct: 157 R--SLNIVPIFLLNKID 171
|
Length = 339 |
| >gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 39/182 (21%), Positives = 67/182 (36%), Gaps = 37/182 (20%)
Query: 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETE 183
++G PNVGKS L + L A V T + G+ + GD +++D GL
Sbjct: 2 LVGLPNVGKSTLLSALTS---AKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPGLLDG 58
Query: 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDV--RSGLHPLD--------LEVGKWLRKHAP 233
A+ G L + A+ L ++ + +ID PL+ + K+ P
Sbjct: 59 ASEGRGLGEQ--ILAH-LYRSDLILHVIDASEDCVGDPLEDQKTLNEEVSGSFLFLKNKP 115
Query: 234 QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGD-------PIAISAETGLGMTELYEA 286
+ ++ NK + +L D + SA T LG+ +
Sbjct: 116 E---MIVANKIDMAS----------ENNLKRLKLDKLKRGIPVVPTSALTRLGLDRVIRT 162
Query: 287 LR 288
+R
Sbjct: 163 IR 164
|
The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 16/205 (7%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGW- 382
++ ++G VGK+TLLN L+ ++ P D + Y+ + L DTAG
Sbjct: 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65
Query: 383 ----LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLS 438
L+ E +G + ++ + + E + ++++ NK+DL
Sbjct: 66 EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125
Query: 439 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRL 498
+ +S + V+ + V+ A + +
Sbjct: 126 EQSSSEEILNQ-----LNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNE----- 175
Query: 499 PTSRLNRWLRKVMGRHSWKDQSAQP 523
L R L + + + K++ Q
Sbjct: 176 LFKELLRKLLEEIEKLVLKNELRQL 200
|
Length = 219 |
| >gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383
P++ IVG PNVGKSTL+N L + VG G+T+ + + L+DT G L
Sbjct: 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGIL 174
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-05
Identities = 53/188 (28%), Positives = 77/188 (40%), Gaps = 61/188 (32%)
Query: 320 ESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE--AGL---TRDSVRVHFEYQGRTV 374
S +P +A+VG N GKSTL NAL D VL + A L TR R+ GR V
Sbjct: 38 RSGVP-TVALVGYTNAGKSTLFNALTGAD-VLAEDQLFATLDPTTR---RIKLP-GGREV 91
Query: 375 YLVDTAGWLQREKEKGPASL---------SVMQSRKNLMRAHVVALVLDA------EEVR 419
L DT G+++ P L V + A ++ V+DA E++
Sbjct: 92 LLTDTVGFIR----DLPHQLVEAFRSTLEEVAE-------ADLLLHVVDASDPDREEQIE 140
Query: 420 AVEE--------GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471
VEE +++++NK+DLL E + + ++ P VF
Sbjct: 141 TVEEVLKELGADDIPIILVLNKIDLLD-----------DEELEERLRAGRP-----DAVF 184
Query: 472 TSALEGRG 479
SA G G
Sbjct: 185 ISAKTGEG 192
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
TV ++G PNVGK+ LFN L + V N P VT + +EG K +++D G
Sbjct: 4 LTVALVGNPNVGKTTLFNALTGANQK-VGNWPG--VTVEKKEGKLKYKGHEIEIVDLPG 59
|
Length = 653 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 60/218 (27%), Positives = 90/218 (41%), Gaps = 53/218 (24%)
Query: 320 ESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE--AGLTRDSVRVHFEYQGRTVYLV 377
S +PL +A+VG N GKSTL NAL D V V + A L + R+ GR V L
Sbjct: 189 RSGIPL-VALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELG-DGRKVLLT 245
Query: 378 DTAGWLQREKEKGPASL-----SVMQSRKNLMRAHVVALVLDA------EEVRAVEE--- 423
DT G+++ P L S ++ K A ++ V+DA E++ AVE+
Sbjct: 246 DTVGFIR----DLPHPLVEAFKSTLEEVKE---ADLLLHVVDASDPEILEKLEAVEDVLA 298
Query: 424 -----GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 478
+++++NK+DLL E + E++ P VF SA G
Sbjct: 299 EIGADEIPIILVLNKIDLLE-----------DEEILAELERGSP-----NPVFISAKTGE 342
Query: 479 GRIAVM----HQVIDTYQKWCLRLPTSRLNR--WLRKV 510
G + + + L LP + R WL
Sbjct: 343 GLDLLRERIIELLSGLRTEVTLELPYTDAGRLSWLHDN 380
|
Length = 411 |
| >gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
T+ ++G PNVGK+ LFN L R+ V N P VT + +EG K +++D
Sbjct: 2 TIALVGNPNVGKTTLFNALTGARQH-VGNWPG--VTVEKKEGTFKYKGYEIEIVD 53
|
Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-04
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
++G PNVGK+ LFN L R+ V N P VT + +EG KLG +++D
Sbjct: 2 LVGNPNVGKTTLFNALTGARQK-VGNWPG--VTVEKKEGEFKLGGKEIEIVD 50
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 285 EALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNAL 344
E + E V D+ T + S ++ + + I+GRPN GKSTLLN +
Sbjct: 13 EEFKGDTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRI 72
Query: 345 LQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404
+ E +V P+ TR + + V L DT G + + A + S +L
Sbjct: 73 IGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWS--SLH 130
Query: 405 RAHVVALVLDA 415
A +V L++D+
Sbjct: 131 SADLVLLIIDS 141
|
Length = 339 |
| >gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ- 384
+A+VG P+VGKSTLLN L V T + V EY+G + L+D G ++
Sbjct: 65 TVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEG 123
Query: 385 --REKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417
+ +G LSV ++ A ++ +VLD E
Sbjct: 124 ASSGRGRGRQVLSVARN------ADLIIIVLDVFE 152
|
Length = 365 |
| >gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 27/155 (17%)
Query: 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV-HFEYQGRTVYLVDTAGWLQR-E 386
+ G PNVGKS+L+ L V P T+ + V HFE + ++DT G L R
Sbjct: 173 VAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTK-GIHVGHFERGYLRIQVIDTPGLLDRPL 230
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDA---------EEVRAVEEGRGL-----VVIVN 432
+E+ + + ++L A V+ + D E++ +EE + L VV++N
Sbjct: 231 EERNEIERQAILALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVIN 288
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467
K+D+ A ++++E ++ + I
Sbjct: 289 KIDI-------ADEEKLEEIEASVLEEGGEEPLKI 316
|
Length = 346 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 329 IVGRPNVGKSTLLNALLQED-----------RVLVGPEAGLTRDSVRVHFEYQGRTVYLV 377
+VG NVGKSTL+NALL+ + R+ V P G T +++ L
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGK---KLY 186
Query: 378 DTAG 381
DT G
Sbjct: 187 DTPG 190
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206651 cd01852, AIG1, AvrRpt2-Induced Gene 1 (AIG1) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 25/115 (21%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQGRTVYLVDTAGWL 383
L+L +VG+ GKS N +L A G+T+ + + GR V ++DT G
Sbjct: 1 LRLVLVGKTGNGKSATGNTILGRKVFESKLSASGVTKTCQKESAVWDGRRVNVIDTPGLF 60
Query: 384 QREKEKGPASLSVM--QSRKNLMRA--------HVVALVLD-----AEEVRAVEE 423
SV Q K ++R H LV+ EE +AVEE
Sbjct: 61 ---------DTSVSPEQLSKEIIRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVEE 106
|
This group represents Arabidoposis protein AIG1 (avrRpt2-induced gene 1) that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). Length = 201 |
| >gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 53/195 (27%), Positives = 77/195 (39%), Gaps = 61/195 (31%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT-- 373
P DD P ++A GR NVGKS+L+NAL L R S GRT
Sbjct: 14 PPDD---GP-EIAFAGRSNVGKSSLINALTN--------RKKLARTSKT-----PGRTQL 56
Query: 374 ---------VYLVDTAGW-----LQREKEKGPASLSVM-----QSRKNLMRAHVVALV-- 412
LVD G+ + EKEK + + R+NL VV L+
Sbjct: 57 INFFEVNDGFRLVDLPGYGYAKVSKEEKEK----WQKLIEEYLEKRENL--KGVVLLMDI 110
Query: 413 ------LDAEEVR-AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465
LD E + E G +++++ K D L S L K++K +I+ + +
Sbjct: 111 RHPLKELDLEMIEWLRERGIPVLIVLTKADKLK---KSELNKQLK-----KIKKALKKDA 162
Query: 466 GIPVVFTSALEGRGR 480
V S+L+ G
Sbjct: 163 DDSVQLFSSLKKTGI 177
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178 |
| >gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 3e-04
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L+ IVG PNVGKSTL NAL
Sbjct: 3 LKCGIVGLPNVGKSTLFNAL 22
|
Length = 364 |
| >gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 15/20 (75%), Positives = 17/20 (85%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L++ IVG PNVGKSTL NAL
Sbjct: 3 LKIGIVGLPNVGKSTLFNAL 22
|
Length = 372 |
| >gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDS--VRVHFEYQGRTVYLVDTAG 381
++ I+G PNVGKSTL+N L + G G+T+ +++ G+ + L+DT G
Sbjct: 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL-----GKGLELLDTPG 175
Query: 382 WL 383
L
Sbjct: 176 IL 177
|
Length = 287 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 9e-04
Identities = 39/160 (24%), Positives = 58/160 (36%), Gaps = 58/160 (36%)
Query: 234 QIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LGFGDPIAISAETGLGMTELYEALR 288
I+P++ +NK + + + E L+ LG+ +A+SA+TG G+ EL E L+
Sbjct: 33 GIEPVIVLNKADLVDD-------EELEELLEIYEKLGY-PVLAVSAKTGEGLDELRELLK 84
Query: 289 PSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQED 348
+VG+ VGKSTLLNALL E
Sbjct: 85 GKT-----------------------------------SVLVGQSGVGKSTLLNALLPEL 109
Query: 349 RVLVGPE-AGL------TRDSVRVHFEYQGRTVYLVDTAG 381
+ G L T G ++DT G
Sbjct: 110 VLATGEISEKLGRGRHTTTHRELFPLPGGG---LIIDTPG 146
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 13/78 (16%)
Query: 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKV 174
ID +L PT+++ G PNVGKS+L +L A P T+ I G + G LR +V
Sbjct: 164 IDPDL-PTIVVAGYPNVGKSSLVRKLTT---AKPEVAPYPFTTKGIHVGHFERGYLRIQV 219
Query: 175 LDSAGLETEATSGSILDR 192
+D+ GL LDR
Sbjct: 220 IDTPGL---------LDR 228
|
Length = 346 |
| >gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG----LTRDSVRVHFEYQGRTVYLVDTAG 381
++A+VG P+VGKSTLL+ L E T V EY+G + L+D G
Sbjct: 2 RVALVGFPSVGKSTLLSKLTNTK-----SEVAAYEFTTLTCVPGVMEYKGAKIQLLDLPG 56
Query: 382 WLQREKE---KGPASLSVMQSRKNLMRAHVVALVLDAEE 417
++ + +G ++V ++ A ++ +VLDA +
Sbjct: 57 IIEGASDGKGRGRQVIAVART------ADLILIVLDATK 89
|
The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233 |
| >gnl|CDD|206687 cd01900, YchF, YchF GTPase | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 329 IVGRPNVGKSTLLNAL 344
IVG PNVGKSTL NAL
Sbjct: 3 IVGLPNVGKSTLFNAL 18
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. Length = 274 |
| >gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 330 VGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVD 378
VG PNVGKS+L+NAL+ +V V G T+ HF+ T++L
Sbjct: 88 VGYPNVGKSSLINALVGSKKVSVSSTPGKTK-----HFQ----TIFLEP 127
|
Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140 |
| >gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 123 VMIIGRPNVGKSALFNRLIRR 143
V ++G NVGKS L N L++
Sbjct: 128 VYVVGATNVGKSTLINALLKS 148
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191 |
| >gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 53/146 (36%)
Query: 328 AIVGRPNVGKSTLLNALLQED------RVLVGPEAGL----TRDSVRVHFEYQGRTVYLV 377
++G VGKS+L+ +L+ E+ RVL PE + T + V +V
Sbjct: 6 VLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTT---------IV 54
Query: 378 DTAGWLQREKEKGPASLSVMQSRKNLM----RAHVVALVLDAE--------------EVR 419
DT+ S Q R NL +A+V+ LV + +R
Sbjct: 55 DTS--------------SRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIR 100
Query: 420 AVEEGRGLVVIVNKMDLLSGRQNSAL 445
+ ++++ NK DL G + L
Sbjct: 101 RLGVKVPIILVGNKSDLRDGSSQAGL 126
|
Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168 |
| >gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 23/165 (13%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383
P+ + ++G GKS+L+NAL Q + V T + R+ Y G + L DT G
Sbjct: 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLG 98
Query: 384 Q---REKEKGPASLSVMQSRK---NLMRAHVVALVLDAEEVRAVEE---GRGLVVIVNKM 434
++ E + L++A AL D + +R V + ++ +V +
Sbjct: 99 DGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQA 158
Query: 435 DLL--------SGRQNS-----ALYKRVKEAVPQEIQTVIPQVTG 466
D +G Q S + ++ EA+ + Q V P V
Sbjct: 159 DRAEPGREWDSAGHQPSPAIKQFIEEKA-EALGRLFQEVKPVVAV 202
|
Length = 296 |
| >gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.004
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 210 MIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 269
+ID R L LDL++ +WL+++ I ++ + K + L G + D
Sbjct: 113 LIDSRHPLKELDLQMIEWLKEYG--IPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170
Query: 270 I-AISAETGLGMTELYEAL 287
+ S+ G+ EL A+
Sbjct: 171 VILFSSLKKQGIDELRAAI 189
|
Length = 196 |
| >gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 41/138 (29%)
Query: 320 ESKLPLQLAIVGRPNVGKSTLLNAL---LQEDRVLVG----PEAGLTRDSVRVHFEYQGR 372
K+ +++ I GRP VGK+TL+ + L+E VG PE + R+ F+
Sbjct: 1 MIKMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE--VREGGKRIGFK---- 54
Query: 373 TVYLVDTA----GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------RAVE 422
+VD A G L R SR + + V V EE+ RA+E
Sbjct: 55 ---IVDLATGEEGILARVGF----------SRPRVGKYGV--NVEGLEEIAIPALRRALE 99
Query: 423 EGRGLVVI--VNKMDLLS 438
E +++I + M+L S
Sbjct: 100 E-ADVIIIDEIGPMELKS 116
|
Length = 179 |
| >gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L++ IVG PNVGKST NAL
Sbjct: 22 LKMGIVGLPNVGKSTTFNAL 41
|
Length = 390 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 607 | |||
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 100.0 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 100.0 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 100.0 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 100.0 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 100.0 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 100.0 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 100.0 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 100.0 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 100.0 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.96 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.94 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.94 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.93 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.92 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.92 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.92 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.91 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.9 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.9 | |
| PF14714 | 80 | KH_dom-like: KH-domain-like of EngA bacterial GTPa | 99.89 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.89 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 99.89 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.89 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.89 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.88 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.88 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.88 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.87 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.87 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.87 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.87 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.87 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.87 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.86 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.86 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.86 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.86 | |
| KOG0084 | 205 | consensus GTPase Rab1/YPT1, small G protein superf | 99.86 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.86 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.86 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.86 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.86 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.85 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.85 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.85 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.85 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.85 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.85 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.85 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.85 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.85 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.85 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.85 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.85 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.85 | |
| KOG0078 | 207 | consensus GTP-binding protein SEC4, small G protei | 99.85 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.85 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.85 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.85 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.84 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.84 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.84 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.84 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.84 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.84 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.84 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.84 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.84 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.84 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.84 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.84 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.84 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.84 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.84 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.84 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.84 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.84 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.84 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.84 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.84 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 99.84 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.84 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.84 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.84 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.83 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.83 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.83 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.83 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.83 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.83 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.83 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.83 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.83 | |
| KOG0092 | 200 | consensus GTPase Rab5/YPT51 and related small G pr | 99.83 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.83 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.83 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.83 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.83 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 99.83 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 99.83 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.83 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.83 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 99.83 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.83 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.83 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.83 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.83 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.83 | |
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 99.83 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.83 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.83 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.83 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.83 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.83 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.83 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 99.83 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.83 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.82 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.82 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.82 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 99.82 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.82 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.82 | |
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 99.82 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.82 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.82 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.82 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.82 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.82 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.82 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.82 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.82 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.82 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.82 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.82 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.82 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.82 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.82 | |
| KOG0094 | 221 | consensus GTPase Rab6/YPT6/Ryh1, small G protein s | 99.82 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.82 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.82 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.82 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.82 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.82 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.82 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.82 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.81 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.81 | |
| KOG0098 | 216 | consensus GTPase Rab2, small G protein superfamily | 99.81 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.81 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.81 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.81 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.81 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.81 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.81 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.81 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.81 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 99.81 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.81 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.81 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.81 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 99.81 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.81 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.81 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.81 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.81 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.81 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.81 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.81 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.81 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.81 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.81 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.81 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.81 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.81 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.81 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.81 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.81 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.81 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.81 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.81 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.8 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.8 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.8 | |
| KOG0394 | 210 | consensus Ras-related GTPase [General function pre | 99.8 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.8 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.8 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.8 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.8 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.8 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.8 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.8 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.8 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.8 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.8 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.8 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.8 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.8 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.8 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.8 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.8 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.8 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.8 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.8 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.8 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.8 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.8 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.8 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.8 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.8 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.8 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.8 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.79 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.79 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.79 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 99.79 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.79 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.79 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 99.79 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 99.79 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.79 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.79 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.79 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.79 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.79 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.79 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.79 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.79 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.79 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.79 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.79 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.79 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.79 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.79 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.79 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.79 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.79 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 99.79 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.79 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.79 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.78 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.78 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.78 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.78 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.78 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.78 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.78 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.78 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.78 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.78 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.78 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.78 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.78 | |
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.78 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.78 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.78 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.78 | |
| KOG0087 | 222 | consensus GTPase Rab11/YPT3, small G protein super | 99.78 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.78 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.78 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.78 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.78 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 99.78 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.78 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.78 | |
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 99.78 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.78 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.78 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.78 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.78 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.78 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 99.77 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.77 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.77 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.77 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.77 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.77 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.77 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.77 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.77 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.77 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.77 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.77 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.77 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 99.77 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.77 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.77 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.77 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.77 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.77 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.77 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 99.77 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.77 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.77 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.76 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.76 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.76 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.76 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.76 | |
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.76 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.76 | |
| KOG0095 | 213 | consensus GTPase Rab30, small G protein superfamil | 99.76 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.76 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.76 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.76 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.76 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.76 | |
| PLN03108 | 210 | Rab family protein; Provisional | 99.76 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.76 | |
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.75 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.75 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.75 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.75 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.75 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.75 | |
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.75 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.75 | |
| KOG0079 | 198 | consensus GTP-binding protein H-ray, small G prote | 99.75 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.75 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.75 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.75 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.75 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.75 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.75 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.75 | |
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.75 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.75 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.74 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.74 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.74 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.74 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.74 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.74 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.74 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.74 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.74 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.74 | |
| KOG0080 | 209 | consensus GTPase Rab18, small G protein superfamil | 99.74 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.74 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.74 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.74 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.74 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.74 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.74 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.73 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.73 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 99.73 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.73 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.73 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.73 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.73 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.73 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 99.73 | |
| KOG0086 | 214 | consensus GTPase Rab4, small G protein superfamily | 99.73 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.73 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.72 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 99.72 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.72 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.72 | |
| KOG0093 | 193 | consensus GTPase Rab3, small G protein superfamily | 99.72 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.72 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.72 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.72 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.72 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.72 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.71 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.71 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.71 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.71 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.71 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.71 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.71 | |
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 99.71 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.71 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.71 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.7 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.7 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.7 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.7 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.7 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.7 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.69 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.69 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.69 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.69 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.68 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.68 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.68 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.68 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.68 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.68 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.67 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.67 | |
| CHL00071 | 409 | tufA elongation factor Tu | 99.67 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.67 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.67 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.67 | |
| KOG0083 | 192 | consensus GTPase Rab26/Rab37, small G protein supe | 99.67 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.67 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.67 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.67 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.67 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.66 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.66 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 99.66 | |
| KOG1707 | 625 | consensus Predicted Ras related/Rac-GTP binding pr | 99.66 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.66 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.66 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.66 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.66 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.66 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.65 | |
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.65 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.65 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.65 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.65 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.65 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.64 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.64 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.64 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.64 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.64 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.64 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.64 | |
| KOG0091 | 213 | consensus GTPase Rab39, small G protein superfamil | 99.63 | |
| KOG1490 | 620 | consensus GTP-binding protein CRFG/NOG1 (ODN super | 99.63 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.63 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.63 | |
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.63 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.63 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.63 | |
| KOG0395 | 196 | consensus Ras-related GTPase [General function pre | 99.63 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.62 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.62 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.62 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.62 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.62 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.62 | |
| KOG0097 | 215 | consensus GTPase Rab14, small G protein superfamil | 99.62 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.62 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.61 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.61 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.61 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.61 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.61 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.61 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.6 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.6 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.6 | |
| KOG0073 | 185 | consensus GTP-binding ADP-ribosylation factor-like | 99.6 | |
| KOG0088 | 218 | consensus GTPase Rab21, small G protein superfamil | 99.6 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.6 | |
| KOG1424 | 562 | consensus Predicted GTP-binding protein MMR1 [Gene | 99.6 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.6 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.59 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.59 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.59 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.59 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.59 | |
| KOG2423 | 572 | consensus Nucleolar GTPase [General function predi | 99.59 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.59 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.58 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.58 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.58 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.58 | |
| KOG2484 | 435 | consensus GTPase [General function prediction only | 99.58 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.58 | |
| KOG1145 | 683 | consensus Mitochondrial translation initiation fac | 99.58 | |
| KOG0081 | 219 | consensus GTPase Rab27, small G protein superfamil | 99.58 | |
| PRK12739 | 691 | elongation factor G; Reviewed | 99.58 | |
| KOG0462 | 650 | consensus Elongation factor-type GTP-binding prote | 99.58 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.58 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.58 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.57 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.57 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.57 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.57 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.57 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.57 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.56 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.56 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.56 | |
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.56 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.55 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.55 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.55 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.55 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.54 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.54 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.54 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.53 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.53 | |
| KOG0075 | 186 | consensus GTP-binding ADP-ribosylation factor-like | 99.53 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.53 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.53 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.53 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.52 | |
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.52 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.52 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.52 |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-90 Score=710.37 Aligned_cols=428 Identities=38% Similarity=0.576 Sum_probs=385.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
|.|||||+||||||||||+|++++.++|++.|| +|||+.++...|.+.+|.+|||+|++...+ +.+...+..+++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pG--vTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPG--VTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCC--CccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999 999999999999999999999999994332 34666788999999
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+.+||++|||+|+..|.++.|.+++++|+.. ++|+|+|+||+|... .+....+++.+|+++++++||.||.|+
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~--~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRS--KKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCH
Confidence 9999999999999999999999999999965 799999999999874 356788999999999999999999999
Q ss_pred HHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCcee
Q 007334 281 TELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360 (607)
Q Consensus 281 ~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~ 360 (607)
.+|++.+.+.++ .. ...+.+....+++||++|+||||||||+|+|+|++++++++.+|||+
T Consensus 154 ~dLld~v~~~l~-~~------------------e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTR 214 (444)
T COG1160 154 GDLLDAVLELLP-PD------------------EEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTR 214 (444)
T ss_pred HHHHHHHHhhcC-Cc------------------ccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccc
Confidence 999999998764 10 00000111357999999999999999999999999999999999999
Q ss_pred eeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEE
Q 007334 361 DSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVV 429 (607)
Q Consensus 361 ~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~iv 429 (607)
|.+...++++++.|.++||||+++. ...++.|.+++.++..++..||+|++|+|++++ ...+.++++||
T Consensus 215 D~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vI 294 (444)
T COG1160 215 DSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVI 294 (444)
T ss_pred cceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999999988 556778999999999999999999999999987 45678999999
Q ss_pred EEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007334 430 IVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 509 (607)
Q Consensus 430 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~ 509 (607)
|+||||+.+.+. ... +.+..++...+.+..++|++++||++|.|+.++|+.+.+.++.|..+++|+.||+||+.
T Consensus 295 vvNKWDl~~~~~--~~~----~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~ 368 (444)
T COG1160 295 VVNKWDLVEEDE--ATM----EEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLED 368 (444)
T ss_pred EEEccccCCchh--hHH----HHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 999999987621 222 33345566678888999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCC-CCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeeccCCCC
Q 007334 510 VMGRHSWKDQ-SAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKCG 583 (607)
Q Consensus 510 ~~~~~~~~~~-~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~~~~ 583 (607)
++..|||+.. |+++|++|++|++++||+|++|+|.|+.++++|+|||+|.||+.|+|.|+||+|.||.+.+++.
T Consensus 369 a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~k~~~~~~~ 443 (444)
T COG1160 369 AVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEFKKKKNPYA 443 (444)
T ss_pred HHHhCCCCccCCceEEEEEEecCCCCCCEEEEEecchhhCchHHHHHHHHHHHHHcCCCCCcEEEEEecCCCccC
Confidence 9999987754 9999999999999999999999999999999999999999999999999999999999977764
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-73 Score=614.60 Aligned_cols=421 Identities=35% Similarity=0.525 Sum_probs=351.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..|+|+|||+||||||||+|+|++.+.+.+.+.++ +|++..+....+.+..+.+|||||+.... ..+...+..++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~g--vT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~ 112 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPG--VTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAE 112 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCC--CCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHH
Confidence 45899999999999999999999988888888888 99999999999999999999999987322 123334566777
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
.++..||++|+|+|++++.+..+..+.++++.. ++|+++|+||+|+.... .....++.+++..++++||++|.
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~--~~piilV~NK~Dl~~~~-----~~~~~~~~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVLRRS--GKPVILAANKVDDERGE-----ADAAALWSLGLGEPHPVSALHGR 185 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCCccc-----hhhHHHHhcCCCCeEEEEcCCCC
Confidence 889999999999999999988888888998875 78999999999986532 12234557788788999999999
Q ss_pred ChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCc
Q 007334 279 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL 358 (607)
Q Consensus 279 gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gt 358 (607)
|+++|++.|.+.+++.. + . .......++|+++|+||||||||+|+|++.++..+++++||
T Consensus 186 gi~eL~~~i~~~l~~~~----------~-------~---~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gt 245 (472)
T PRK03003 186 GVGDLLDAVLAALPEVP----------R-------V---GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGT 245 (472)
T ss_pred CcHHHHHHHHhhccccc----------c-------c---ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCc
Confidence 99999999987664310 0 0 00012358999999999999999999999887889999999
Q ss_pred eeeeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcE
Q 007334 359 TRDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGL 427 (607)
Q Consensus 359 T~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ 427 (607)
|+|.....+.+++..+.||||||+.+. ....+.+.+...++..+++.||++++|+|++++ .....++|+
T Consensus 246 T~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~pi 325 (472)
T PRK03003 246 TVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRAL 325 (472)
T ss_pred cCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE
Confidence 999999899999999999999998765 223335666667777889999999999999875 234468999
Q ss_pred EEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 007334 428 VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWL 507 (607)
Q Consensus 428 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l 507 (607)
|+|+||||+.+.... ..+..++.+.+....++|++++||++|.|++++|+.+.+.++.+..+++|+.||+||
T Consensus 326 IiV~NK~Dl~~~~~~--------~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~ 397 (472)
T PRK03003 326 VLAFNKWDLVDEDRR--------YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWL 397 (472)
T ss_pred EEEEECcccCChhHH--------HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 999999999753211 112233344445555789999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeeccC
Q 007334 508 RKVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPR 580 (607)
Q Consensus 508 ~~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~ 580 (607)
++++..+||| ..|+++|++|++|+.++||+|++|+| +.++++|+|||+|+||+.|+|.|+||+|.||++.|
T Consensus 398 ~~~~~~~~~p~~~g~~~k~~y~~q~~~~pp~f~~~~~--~~~~~~y~~~l~~~~r~~~~~~g~pi~~~~~~~~~ 469 (472)
T PRK03003 398 GELVAATPPPVRGGKQPRILFATQASTRPPTFVLFTT--GFLEAGYRRFLERRLRETFGFEGSPIRISVRVREK 469 (472)
T ss_pred HHHHHcCCCCCCCCeeeeEEEEECCCCCCCEEEEEeC--CCCChHHHHHHHHHHHHHcCCCcceEEEEEEecCc
Confidence 9999999887 67899999999999999999999966 78999999999999999999999999999996643
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-71 Score=600.33 Aligned_cols=417 Identities=40% Similarity=0.626 Sum_probs=357.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|||+||||||||+|+|++.+.+++++.++ +|++..+..+.+.+..+.+|||||+.... +.+...+..++..++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g--~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPG--VTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCC--cccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHH
Confidence 48999999999999999999998888999998 99999999999999999999999986322 233445677888899
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
..+|++++|+|++++.+..+.++.+++++. ++|+++|+||+|+..... ...+++.+|+.+++++||++|.|++
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~-----~~~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRKS--GKPVILVANKIDGKKEDA-----VAAEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHh--CCCEEEEEECccCCcccc-----cHHHHHhcCCCCeEEEeCCcCCChH
Confidence 999999999999999999998999999886 789999999999876432 2345778899899999999999999
Q ss_pred HHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceee
Q 007334 282 ELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD 361 (607)
Q Consensus 282 eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~ 361 (607)
++++.+.+.++... .........++|+++|+||||||||+|+|++.++..+++.+|||++
T Consensus 150 ~ll~~i~~~l~~~~--------------------~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~ 209 (429)
T TIGR03594 150 DLLDAILELLPEEE--------------------EEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRD 209 (429)
T ss_pred HHHHHHHHhcCccc--------------------ccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceEC
Confidence 99999887664310 0001112458999999999999999999999988889999999999
Q ss_pred eEEEEEEEcCeEEEEEecCCCccccc-ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEE
Q 007334 362 SVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVI 430 (607)
Q Consensus 362 ~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv 430 (607)
.....+.+++..+.+|||||+.+... ....+.+...++..+++.||++|+|+|++++ .....++|+|+|
T Consensus 210 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv 289 (429)
T TIGR03594 210 SIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIV 289 (429)
T ss_pred cEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEE
Confidence 99999999999999999999977632 3345677778888899999999999999976 234568999999
Q ss_pred EeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 007334 431 VNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKV 510 (607)
Q Consensus 431 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~ 510 (607)
+||||+.+. ....+ .+...+...+....++|++++||++|.|++++|+.+.+.++.+..+++|+.||+||.++
T Consensus 290 ~NK~Dl~~~---~~~~~----~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~ 362 (429)
T TIGR03594 290 VNKWDLVKD---EKTRE----EFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRISTSKLNRVLEEA 362 (429)
T ss_pred EECcccCCC---HHHHH----HHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 999999832 11122 23344455566667789999999999999999999999999999999999999999999
Q ss_pred HHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEe
Q 007334 511 MGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576 (607)
Q Consensus 511 ~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~ 576 (607)
+..+++| ..|+++|++|++|+..+||+|++|+|+|+.++++|+|||+|+||+.|+|.|+||+|.||
T Consensus 363 ~~~~~~p~~~~~~~k~~y~~q~~~~pp~~~~~~n~~~~~~~~y~~~l~~~~~~~~~~~g~p~~~~~~ 429 (429)
T TIGR03594 363 VAAHPPPLVNGRRLKIKYATQVGTNPPTFVLFGNRPELLPFSYKRYLENQFREAFGFEGTPIRLEFK 429 (429)
T ss_pred HHcCCCCCCCCceeeEEEEECCCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhcCCCcceEEEEeC
Confidence 9988777 67889999999999999999999999999999999999999999999999999999985
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=593.82 Aligned_cols=418 Identities=40% Similarity=0.618 Sum_probs=356.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+|||+||||||||+|+|++.+.+.+.+.++ +|++..+....+.+..+.+|||||+..... .....+..++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~--~t~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPG--VTRDRIYGEAEWLGREFILIDTGGIEPDDD--GFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC--CcccceEEEEEECCcEEEEEECCCCCCcch--hHHHHHHHHHHHH
Confidence 689999999999999999999998888888888 999999999999999999999999985221 2444566677788
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+..+|++|+|+|++++.+..+.++.+|+++. ++|+++|+||+|+... .....+++.+++.+++++||++|.|+
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~D~~~~-----~~~~~~~~~lg~~~~~~iSa~~g~gv 150 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKS--NKPVILVVNKVDGPDE-----EADAYEFYSLGLGEPYPISAEHGRGI 150 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCccc-----hhhHHHHHhcCCCCCEEEEeeCCCCH
Confidence 9999999999999999999888899999887 7899999999996542 23345567788877999999999999
Q ss_pred HHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCcee
Q 007334 281 TELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR 360 (607)
Q Consensus 281 ~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~ 360 (607)
+++++.|.+..+.. .........++|+++|+||+|||||+|+|++.++..+++.+|+|+
T Consensus 151 ~~l~~~I~~~~~~~---------------------~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~ 209 (435)
T PRK00093 151 GDLLDAILEELPEE---------------------EEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTR 209 (435)
T ss_pred HHHHHHHHhhCCcc---------------------ccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceE
Confidence 99999987632210 000011236899999999999999999999998899999999999
Q ss_pred eeEEEEEEEcCeEEEEEecCCCcccc-cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEE
Q 007334 361 DSVRVHFEYQGRTVYLVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVV 429 (607)
Q Consensus 361 ~~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~iv 429 (607)
+.+...+.+++..+.+|||||+.+.. .....+.++..++.++++.||++|+|+|++++ .....++|+|+
T Consensus 210 ~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~iv 289 (435)
T PRK00093 210 DSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVI 289 (435)
T ss_pred EEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEE
Confidence 99988888999999999999987763 23346677778888899999999999999976 23456899999
Q ss_pred EEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007334 430 IVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 509 (607)
Q Consensus 430 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~ 509 (607)
|+||||+.+... . +.+..++...+....++|++++||++|.|++++++.+.+.+..+..+++|+.+|+||.+
T Consensus 290 v~NK~Dl~~~~~----~----~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~ 361 (435)
T PRK00093 290 VVNKWDLVDEKT----M----EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTSVLNRVLEE 361 (435)
T ss_pred EEECccCCCHHH----H----HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChHHHHHHHHH
Confidence 999999984321 1 22333444555666778999999999999999999999999999999999999999999
Q ss_pred HHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeec
Q 007334 510 VMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSV 578 (607)
Q Consensus 510 ~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~ 578 (607)
++..+++| ..|+.+|++|++|+..+||+|++|+|.++.++++|+|||+|+||+.|+|.|+||+|.||++
T Consensus 362 ~~~~~~~p~~~~~~~k~~~~~q~~~~pp~f~~~~n~~~~~~~~y~~~l~~~~r~~~~~~g~p~~~~~~~~ 431 (435)
T PRK00093 362 AVERHPPPLVKGRRLKIKYATQVGTNPPTFVLFVNDPELLPFSYKRYLENQLREAFDFEGTPIRLEFREK 431 (435)
T ss_pred HHHcCCCCCCCCeeeeEEEEEcCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCcccEEEEEecC
Confidence 99998877 6788999999999999999999999999999999999999999999999999999999964
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-69 Score=609.18 Aligned_cols=423 Identities=33% Similarity=0.480 Sum_probs=353.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..++|+|+|+||||||||+|+|++.+.+++++.+| +|++.......+.+..+.+|||||+..... .+...+..++.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pG--vT~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~ 349 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPG--VTRDRVSYDAEWAGTDFKLVDTGGWEADVE--GIDSAIASQAQ 349 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--eeEEEEEEEEEECCEEEEEEeCCCcCCCCc--cHHHHHHHHHH
Confidence 45899999999999999999999988888999998 999999998889999999999999874321 23335667778
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
.++..||++|+|+|++++.+..+.++.++|+.. ++|+|+|+||+|+... ......++.++++.++++||++|.
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~-----~~~~~~~~~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA--GKPVVLAVNKIDDQAS-----EYDAAEFWKLGLGEPYPISAMHGR 422 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEECcccccc-----hhhHHHHHHcCCCCeEEEECCCCC
Confidence 889999999999999999998888888998875 8999999999998653 123345667788888999999999
Q ss_pred ChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCc
Q 007334 279 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL 358 (607)
Q Consensus 279 gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gt 358 (607)
|+++|++.|.+.++... . +... ......++|+++|+||||||||+|+|++.++..+++++||
T Consensus 423 GI~eLl~~i~~~l~~~~---------~------~~~a---~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt 484 (712)
T PRK09518 423 GVGDLLDEALDSLKVAE---------K------TSGF---LTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT 484 (712)
T ss_pred CchHHHHHHHHhccccc---------c------cccc---cCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC
Confidence 99999999987664310 0 0000 0011247999999999999999999999887788999999
Q ss_pred eeeeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcE
Q 007334 359 TRDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGL 427 (607)
Q Consensus 359 T~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ 427 (607)
|+|.+...+.+++..+.||||||+.+. ...++.+.+...++..+++.||++++|+|++++ .....++|+
T Consensus 485 T~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~pi 564 (712)
T PRK09518 485 TRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRAL 564 (712)
T ss_pred CcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE
Confidence 999999889999999999999998765 223334566667778889999999999999876 233468999
Q ss_pred EEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 007334 428 VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWL 507 (607)
Q Consensus 428 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l 507 (607)
|+|+||||+.+... .+ .+...+...+....+.+++++||++|.|++++++.+.+.+.++..+++|+.||+||
T Consensus 565 IiV~NK~DL~~~~~----~~----~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l 636 (712)
T PRK09518 565 VLVFNKWDLMDEFR----RQ----RLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIPTGKLNAFL 636 (712)
T ss_pred EEEEEchhcCChhH----HH----HHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCChHHHHHHH
Confidence 99999999976421 11 12223333444556789999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeeccC
Q 007334 508 RKVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPR 580 (607)
Q Consensus 508 ~~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~ 580 (607)
++++..+|+| ..|+++|++|++|+..+||+|++|+| +.++++|+|||+|+||+.|+|.|+||+|.||++.|
T Consensus 637 ~~~~~~~~~p~~~g~~~ki~y~~q~~~~Pp~f~~f~~--~~~~~~y~r~l~~~~r~~~~~~g~pi~~~~~~~~~ 708 (712)
T PRK09518 637 GKIQAEHPHPLRGGKQPRILFATQASTRPPRFVIFTT--GFLEHGYRRFLERSLREEFGFEGSPIQISVNIREK 708 (712)
T ss_pred HHHHhhCCCCccCCeeeeEEEEECCCCCCCEEEEEcC--CCCChHHHHHHHHHHHHHcCCccceEEEEEEeccc
Confidence 9999988887 67899999999999999999999977 78999999999999999999999999999997743
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=319.13 Aligned_cols=249 Identities=22% Similarity=0.238 Sum_probs=208.2
Q ss_pred CCCCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc------cCccCCCCCCCCCCccccccccc
Q 007334 31 PVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN------EALEDTHVEPEPDGVVEDHKVKP 104 (607)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~------~g~g~~~~~~~~~~~~~~~~~~~ 104 (607)
.+...+++.++|..+. .||.|.++++|||||||+|++||+.+.|.++++. +|||+++++.++|.+ +.||..
T Consensus 92 ~~kVIDRt~LILdIFa-~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR~i--r~rI~~ 168 (411)
T COG2262 92 GVKVIDRTQLILDIFA-QRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRRRI--RRRIAK 168 (411)
T ss_pred CCEEEehHhHHHHHHH-HHhccchhhhhhhHHhhhhhhhHhHhhhhhcccccCCCCCCCCCchHHHHHHHHH--HHHHHH
Confidence 3466677777777764 8999999999999999999999999999999955 889999999999999 999999
Q ss_pred cccCCccccc--------ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEe
Q 007334 105 LYEKPVDFTK--------IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVL 175 (607)
Q Consensus 105 l~~~~~~~~~--------~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~li 175 (607)
+++++..+.+ +..+..|.|+||||+|+|||||||+|++... .+.+..+ +|.|.....+.+. |..+.+.
T Consensus 169 i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LF--ATLdpttR~~~l~~g~~vlLt 245 (411)
T COG2262 169 LKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLF--ATLDPTTRRIELGDGRKVLLT 245 (411)
T ss_pred HHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCe-ecccccc--ccccCceeEEEeCCCceEEEe
Confidence 9999987665 3346789999999999999999999998654 3566776 8999888888876 6899999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
||.||+.+.|+... ..|..|++...+||+++||+|+|++...+..+ +.+.|.+. ..++|+|+|+||+|+..+..
T Consensus 246 DTVGFI~~LP~~LV--~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-- 321 (411)
T COG2262 246 DTVGFIRDLPHPLV--EAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-- 321 (411)
T ss_pred cCccCcccCChHHH--HHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--
Confidence 99999999998665 78999999999999999999999996555543 66778776 45689999999999887532
Q ss_pred HHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 254 LAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
....... +.+.++++||++|+|++.|++.|.+.+..
T Consensus 322 ---~~~~~~~-~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 322 ---ILAELER-GSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ---hhhhhhh-cCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 1112222 22368999999999999999999987764
|
|
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=316.12 Aligned_cols=249 Identities=19% Similarity=0.222 Sum_probs=199.9
Q ss_pred CCCCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc------cCccCCCCCCCCCCccccccccc
Q 007334 31 PVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN------EALEDTHVEPEPDGVVEDHKVKP 104 (607)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~------~g~g~~~~~~~~~~~~~~~~~~~ 104 (607)
.+++++++.++|..+. .||+|+++++|||||+|+|++||+.+.|.+++++ +|||++++|.+++.+ +.++..
T Consensus 97 ~~~v~DR~~lil~IF~-~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~~~e~d~r~i--~~ri~~ 173 (426)
T PRK11058 97 ECRVIDRTGLILDIFA-QRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLL--RNRIVQ 173 (426)
T ss_pred CCeEecchhHHHHHHH-HhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChhHhHHHHHHH--HHHHHH
Confidence 4578889998888875 8999999999999999999999999999999998 789999999999999 999999
Q ss_pred cccCCcccccc--------cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe-eEEEe
Q 007334 105 LYEKPVDFTKI--------DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVL 175 (607)
Q Consensus 105 l~~~~~~~~~~--------~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~-~~~li 175 (607)
+++++.++.+. ...+.|.|+|||+||||||||||+|++.+.. +.+.++ +|+|...+.+.+.+. .+.+|
T Consensus 174 l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~--tTld~~~~~i~l~~~~~~~l~ 250 (426)
T PRK11058 174 ILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLF--ATLDPTLRRIDVADVGETVLA 250 (426)
T ss_pred HHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCC--CCcCCceEEEEeCCCCeEEEE
Confidence 98888765431 1134689999999999999999999998765 677777 899998888877664 89999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
||||+....|++.. +.+..+...+..||++|+|+|++++.+..+.. +.+++... ..++|+++|+||+|+.....
T Consensus 251 DTaG~~r~lp~~lv--e~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-- 326 (426)
T PRK11058 251 DTVGFIRHLPHDLV--AAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-- 326 (426)
T ss_pred ecCcccccCCHHHH--HHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--
Confidence 99999765555443 34566788899999999999999987666643 45666654 23689999999999875311
Q ss_pred HHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 254 LAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
... .....+....+++||++|.|+++|++.|.+.+.
T Consensus 327 --~~~-~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 327 --PRI-DRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred --HHH-HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 111 112234433589999999999999999987764
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=296.66 Aligned_cols=245 Identities=20% Similarity=0.247 Sum_probs=196.5
Q ss_pred CCCCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc------cCccCCCCCCCCCCccccccccc
Q 007334 31 PVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN------EALEDTHVEPEPDGVVEDHKVKP 104 (607)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~------~g~g~~~~~~~~~~~~~~~~~~~ 104 (607)
.+++.+++.++|..+. .||+|++|++|+++|+|+|.+||+.+.|.+++++ +|||++.++.+++.+ +.|+..
T Consensus 89 ~~~v~Dr~~lil~iF~-~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~~g~gE~~~~~~~~~i--~~ri~~ 165 (351)
T TIGR03156 89 GCRVIDRTGLILDIFA-QRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGTRGPGETQLETDRRLI--RERIAQ 165 (351)
T ss_pred CCcccchHHHHHHHHH-HhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCCCCCChhHHHHHHHHH--HHHHHH
Confidence 4578888888888875 8999999999999999999999999999888777 678888888889989 899999
Q ss_pred cccCCcccccc--------cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEe
Q 007334 105 LYEKPVDFTKI--------DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVL 175 (607)
Q Consensus 105 l~~~~~~~~~~--------~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~li 175 (607)
+++++..+.+. ..++.++|+|+|+||||||||+|+|++.+ ..+.+.++ +|+|.....+.+ ++..+.+|
T Consensus 166 l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~--tT~d~~~~~i~~~~~~~i~l~ 242 (351)
T TIGR03156 166 LKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLF--ATLDPTTRRLDLPDGGEVLLT 242 (351)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCc--cccCCEEEEEEeCCCceEEEE
Confidence 99988866542 12456999999999999999999999976 56777787 899999888888 67899999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC-CCCcEEEEecCCCcccCCcCc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-PQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~ 253 (607)
||||+....|++.. +.+..+..++.+||++++|+|++++.+..+. .+.+++.... .++|+++|+||+|+.....
T Consensus 243 DT~G~~~~l~~~li--e~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-- 318 (351)
T TIGR03156 243 DTVGFIRDLPHELV--AAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-- 318 (351)
T ss_pred ecCcccccCCHHHH--HHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh--
Confidence 99999755554433 3456678889999999999999998776653 2445665542 3689999999999975321
Q ss_pred HHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 254 LAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
. ..... +..+++++||++|.|+++|++.|.+.
T Consensus 319 ---v-~~~~~-~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 319 ---I-ERLEE-GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ---H-HHHHh-CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 1 11111 22367999999999999999998653
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=300.13 Aligned_cols=423 Identities=33% Similarity=0.375 Sum_probs=255.1
Q ss_pred ccCCcccccccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC
Q 007334 106 YEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 185 (607)
+..-.+..+..+.-.+.+.+.|++|+||++|.|. .....+.+.++ +|+|..++...++...|...||.|+.....
T Consensus 61 R~sG~~a~kv~r~L~~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~--v~~D~~l~l~~~gp~sFtgeD~~el~~hgs 135 (531)
T KOG1191|consen 61 RISGPDATKVARRLLRSVMVPKRRNAGLRALYNP---EVRVYVVDEDG--VTRDRALGLYFLGPQSFTGEDVVELQTHGS 135 (531)
T ss_pred EecCchHHHHHHHhccccccCCCCccccccccCh---hhcccccCCCC--cchhhhhhccccCCceeeeeeeEEEEEecC
Confidence 3333333333334467899999999999999999 22333445566 999999998888999999999999985433
Q ss_pred chhHHHHHHHHHHHHhhcc-CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 186 SGSILDRTAGMTANVLAKT-QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~a-d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
.... ...+..+..+ ---+-..+..+...........+|.+..+-..+|.+-|+.-.... ..+....++.+
T Consensus 136 ~avv-----~~~l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~A----l~~v~g~~~~l 206 (531)
T KOG1191|consen 136 SAVV-----VGVLTALGASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAA----LDEVAGEALAL 206 (531)
T ss_pred ccch-----hhHHHHhhhccCCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhh----hhhhcchhHHh
Confidence 2211 1111222200 000111111111111112223345444333444555554432221 01111111111
Q ss_pred CCC-CcEEeecCCCCC----------------------hHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccc
Q 007334 265 GFG-DPIAISAETGLG----------------------MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDES 321 (607)
Q Consensus 265 ~~~-~~i~iSA~~g~g----------------------i~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (607)
.+. ..+.+++.++.+ ..+|.+.+...+.. ....+.-
T Consensus 207 ~~~~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~---------------------~~~~e~l 265 (531)
T KOG1191|consen 207 CFGWRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNK---------------------ADEIERL 265 (531)
T ss_pred hhhHHHHHHHHHhccceeechhhcCchhhccchhhhhHHHHHHHHHHHHHHh---------------------hhhHHHh
Confidence 111 111222222211 11222222222211 0111222
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+.+++|+|+|+||||||||+|+|+..++++|++.||||||.+...++++|.++.|.||||+++ +.....|.+++.++.+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe-~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE-ESNDGIEALGIERARK 344 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc-ccCChhHHHhHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999988 4456688999999999
Q ss_pred HHhhccEEEEEeccchh---------hHH-------------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 402 NLMRAHVVALVLDAEEV---------RAV-------------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~---------~~~-------------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
.+..||++++|+|+... ..+ ....|++++.||.|+...-.-. .+.-..+...
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~---~~~~~~~~~~--- 418 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM---TKIPVVYPSA--- 418 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc---cCCceecccc---
Confidence 99999999999999332 000 1237899999999998651100 0000000000
Q ss_pred hCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--CCCCcCcEEEEeecCCCCCE
Q 007334 460 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWK--DQSAQPKIKYFTQVKARPPT 537 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~ki~~~~q~~~~pp~ 537 (607)
.-....-.++++|+++++|+..|...+ +|.|....+..+.++ ..+++.+.. .|....|
T Consensus 419 -~~~~~~~i~~~vs~~tkeg~~~L~~al---------------l~~~~~~~~~~~s~~~t~~~~r~~~~--~r~~~~~-- 478 (531)
T KOG1191|consen 419 -EGRSVFPIVVEVSCTTKEGCERLSTAL---------------LNIVERLVVSPHSAPPTLSQKRIKEL--LRTCAAP-- 478 (531)
T ss_pred -ccCcccceEEEeeechhhhHHHHHHHH---------------HHHHHHhhcCCCCCchhhcchhHHHH--HHhhhhh--
Confidence 000112245568999999988776554 455555555444443 233333333 3333333
Q ss_pred EEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeeccCCCCCCCCCCccccccccccccc
Q 007334 538 FVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSVPRKCGSSSSRQNTGQKVGRTFSDK 602 (607)
Q Consensus 538 f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (607)
..|.+|+.++++++++|.|.|+|+..+...+-.++-+.....+...||+..+|
T Consensus 479 ------------~l~~~~~~k~~~~D~~la~~~lR~a~~~i~r~tggggte~vls~ifqkfcigK 531 (531)
T KOG1191|consen 479 ------------ELERRFLAKQLKEDIDLAGEPLRLAQRSIARITGGGGTEEVLSSIFQKFCIGK 531 (531)
T ss_pred ------------hHHHHHHhhhcccchhhccchHHHHHhhhcccCCCCchhhHHHHHHHHhhcCC
Confidence 78999999999999999999999998877666665555566666666666655
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-30 Score=252.12 Aligned_cols=246 Identities=17% Similarity=0.126 Sum_probs=197.2
Q ss_pred CCCCCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc-----cCccCCCCCCCCCCccccccccc
Q 007334 30 NPVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN-----EALEDTHVEPEPDGVVEDHKVKP 104 (607)
Q Consensus 30 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~-----~g~g~~~~~~~~~~~~~~~~~~~ 104 (607)
..|+.|+++..+|..+. .+|.|++|.+|+++|+.+|..+|+.+.|.++.++ .|+|+.+++.+.+.+ .+.++.+
T Consensus 78 ~~VrvfDr~~~vl~if~-q~a~T~earlqvalAempy~~~rl~r~~~hl~r~~g~~v~gsges~id~d~~rl-lr~kea~ 155 (410)
T KOG0410|consen 78 VRVRVFDRRHTVLQIFE-QEAVTAEARLQVALAEMPYVGGRLERELQHLRRQSGGQVKGSGESIIDRDIRRL-LRIKEAQ 155 (410)
T ss_pred cceeeecchhhHHHHHH-HHhhhHHHHHhhhhhcCccccchHHHHHHHHHhcCCCcccCccchHhHHHHHHH-HHHHHHH
Confidence 45689999998888764 7788899999999999999999999999999887 788999998888433 3888889
Q ss_pred cccCCccccccc-------ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEec
Q 007334 105 LYEKPVDFTKID-------INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLD 176 (607)
Q Consensus 105 l~~~~~~~~~~~-------~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liD 176 (607)
++++|.++.+.. ....|.|++|||+|+|||||+++|++... ...+..+ .|.|........ +|..+.+.|
T Consensus 156 lrKeL~~vrrkr~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal-~p~drLF--ATLDpT~h~a~Lpsg~~vlltD 232 (410)
T KOG0410|consen 156 LRKELQRVRRKRQRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAAL-YPNDRLF--ATLDPTLHSAHLPSGNFVLLTD 232 (410)
T ss_pred HHHHHHHHHHHHhhhhccccCCCceEEEEeecCccHHHHHHHHHhhhc-Cccchhh--eeccchhhhccCCCCcEEEEee
Confidence 998888766532 33569999999999999999999996543 3455555 777776555443 678899999
Q ss_pred CCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC-CC----CcEEEEecCCCcccCC
Q 007334 177 SAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA-PQ----IKPIVAMNKCESLHNG 250 (607)
Q Consensus 177 TpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~-~~----~p~ilV~NK~D~~~~~ 250 (607)
|.||.+++|++.+ ..|+.|++.+.+||+++||+|+|+|..+++.+ +...|++.. +. ..+|-|.||+|..+..
T Consensus 233 TvGFisdLP~~Lv--aAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~ 310 (410)
T KOG0410|consen 233 TVGFISDLPIQLV--AAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE 310 (410)
T ss_pred chhhhhhCcHHHH--HHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc
Confidence 9999999998766 78999999999999999999999998888755 778888772 11 2257889999987653
Q ss_pred cCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 251 TGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
... ... ..+++||++|.|++++++.+...+..
T Consensus 311 ~e~--------E~n---~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 311 VEE--------EKN---LDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred Ccc--------ccC---CccccccccCccHHHHHHHHHHHhhh
Confidence 211 011 25899999999999999998876643
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-27 Score=240.31 Aligned_cols=216 Identities=29% Similarity=0.338 Sum_probs=161.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
..|+|||+||||||||+|+|+|...++|+++||+|||.+++...|.+..+.++||+|+.... ..........+++.++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~-~~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD-EDELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC-chHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999986542 12345566788999999
Q ss_pred hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 405 RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 405 ~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
.||++|||+|+..+ .....++|+|+|+||+|-...+.. ...+.....-.+++|||
T Consensus 83 eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~---------------~~efyslG~g~~~~ISA 147 (444)
T COG1160 83 EADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEEL---------------AYEFYSLGFGEPVPISA 147 (444)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhh---------------HHHHHhcCCCCceEeeh
Confidence 99999999999886 223456999999999997633110 01111223347889999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCC-CCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQ-SAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAEL 553 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~ 553 (607)
.+|.|+.+|++++.+.+. ..... .... ....|+. +-.+|. .++++|.|...
T Consensus 148 ~Hg~Gi~dLld~v~~~l~-~~e~~-----------------~~~~~~~~ikia----iiGrPN------vGKSsLiN~il 199 (444)
T COG1160 148 EHGRGIGDLLDAVLELLP-PDEEE-----------------EEEEETDPIKIA----IIGRPN------VGKSSLINAIL 199 (444)
T ss_pred hhccCHHHHHHHHHhhcC-Ccccc-----------------cccccCCceEEE----EEeCCC------CCchHHHHHhc
Confidence 999999999998887542 11110 0000 1223333 334555 67777766642
Q ss_pred ---HH--------HHHHhHhhCCCCceeEEEEEeeccCCCCC
Q 007334 554 ---RF--------LTKSLKEDFDLGGIPIRITQRSVPRKCGS 584 (607)
Q Consensus 554 ---r~--------l~~~~~~~~~~~g~pi~~~~~~~~~~~~~ 584 (607)
|- ..+.|...|.+.|..+.++++++.++++.
T Consensus 200 geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 200 GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 22 22889999999999999999999876665
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=209.99 Aligned_cols=146 Identities=31% Similarity=0.432 Sum_probs=112.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH-
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL- 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i- 403 (607)
++|+++|.||||||||+|+|+|.. ..++++||+|++...+.+.+++..+.++||||++...... .++ ..+..++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s-~ee---~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS-EEE---RVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS-HHH---HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC-cHH---HHHHHHHh
Confidence 479999999999999999999986 8899999999999999999999999999999987763221 121 2223343
Q ss_pred -hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 404 -MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 404 -~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
..+|++++|+|++.. +..+.++|+|+|+||+|+..........+.+.+.+ ++|++++||
T Consensus 76 ~~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L------------g~pvi~~sa 143 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERL------------GVPVIPVSA 143 (156)
T ss_dssp HTSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHH------------TS-EEEEBT
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHh------------CCCEEEEEe
Confidence 579999999999986 44567999999999999987655443334333221 789999999
Q ss_pred CCCCCHHHHHHHH
Q 007334 475 LEGRGRIAVMHQV 487 (607)
Q Consensus 475 ~~g~gv~~l~~~i 487 (607)
++|+|+++|+++|
T Consensus 144 ~~~~g~~~L~~~I 156 (156)
T PF02421_consen 144 RTGEGIDELKDAI 156 (156)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHhhC
Confidence 9999999998875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=219.38 Aligned_cols=167 Identities=26% Similarity=0.376 Sum_probs=141.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
-.|+|||+||||||||+|+|+|.+.+++++.+. |||....+.+..++.++.++||||+... ...+...+.+.....
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q--TTR~~I~GI~t~~~~QiIfvDTPGih~p--k~~l~~~m~~~a~~s 82 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ--TTRNRIRGIVTTDNAQIIFVDTPGIHKP--KHALGELMNKAARSA 82 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc--hhhhheeEEEEcCCceEEEEeCCCCCCc--chHHHHHHHHHHHHH
Confidence 469999999999999999999999999999998 9999999999999999999999999843 334444566777889
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+.++|+++||+|+.++....+..+.+.|++. +.|+++++||+|..++................+.+++++||++|.|+
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~~--~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~ 160 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKKT--KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV 160 (298)
T ss_pred hccCcEEEEEEeccccCCccHHHHHHHHhhc--CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence 9999999999999999999998888888874 68999999999998865422222223334456778999999999999
Q ss_pred HHHHHHhccchHH
Q 007334 281 TELYEALRPSVED 293 (607)
Q Consensus 281 ~eL~~~i~~~l~~ 293 (607)
+.|.+.+.+.+++
T Consensus 161 ~~L~~~i~~~Lpe 173 (298)
T COG1159 161 DTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999988865
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=224.30 Aligned_cols=154 Identities=34% Similarity=0.469 Sum_probs=131.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+++++++|+||||||||+|+|++.++++|+++||||||.+...+..+|.++.|+||||+++. ....|...+.+++..
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRET--DDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccC--ccHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999999854 445788999999999
Q ss_pred HhhccEEEEEeccchh---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 403 LMRAHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
+..||++++|+|++.+ .....++|+++|.||+||....... .+ ....+.+++.+|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~------------~~----~~~~~~~~i~iS 357 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELE------------SE----KLANGDAIISIS 357 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccc------------hh----hccCCCceEEEE
Confidence 9999999999999984 2134578999999999998763211 00 112245799999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~~~ 494 (607)
|++|+|++.|.++|.+.+...
T Consensus 358 a~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 358 AKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ecCccCHHHHHHHHHHHHhhc
Confidence 999999999999998877644
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-24 Score=195.88 Aligned_cols=153 Identities=30% Similarity=0.432 Sum_probs=116.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.||||||||||+|+|.+ +.++++|| +|.+...+.+.+.+..+.++||||..+-.+... ....+..++
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG--~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~----ee~v~~~~l 74 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPG--TTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE----EERVARDYL 74 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTT--SSSEEEEEEEEETTEEEEEEE----SSSSSSSH----HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCC--CCeeeeeEEEEecCceEEEEECCCcccCCCCCc----HHHHHHHHH
Confidence 69999999999999999999988 56899999 999999999999999999999999875443221 112333343
Q ss_pred --hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 202 --AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 202 --~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
...|++++|+|+++ ...+..+..++.+. ++|+++|+||+|.......... .......+|. +++++||++|+|
T Consensus 75 ~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id-~~~Ls~~Lg~-pvi~~sa~~~~g 148 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATN--LERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIEID-AEKLSERLGV-PVIPVSARTGEG 148 (156)
T ss_dssp HHTSSSEEEEEEEGGG--HHHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS--EEEEBTTTTBT
T ss_pred hhcCCCEEEEECCCCC--HHHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEEC-HHHHHHHhCC-CEEEEEeCCCcC
Confidence 68999999999986 34455677777777 8999999999999876543322 2223344677 899999999999
Q ss_pred hHHHHHHh
Q 007334 280 MTELYEAL 287 (607)
Q Consensus 280 i~eL~~~i 287 (607)
+++|+++|
T Consensus 149 ~~~L~~~I 156 (156)
T PF02421_consen 149 IDELKDAI 156 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-25 Score=237.57 Aligned_cols=224 Identities=22% Similarity=0.264 Sum_probs=167.7
Q ss_pred hhhccccchhhhhhhhhcccccccccccc-cccc--------cCccCCCCCCCCCCccccccccccccCCccccccc---
Q 007334 49 RASAAGSLYQVGSSLKCNLLPEVPRGFCG-VVQN--------EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKID--- 116 (607)
Q Consensus 49 ~~~~~~~~~qv~la~l~~~~~~~~~~~~~-~~~~--------~g~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 116 (607)
.|.+..+ +|++++++.+.+++....|.+ +.+. .-+++...+.+++.+ ..++..+++++.++....
T Consensus 133 ~a~t~~~-~~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i--~~~i~~l~~~l~~l~~~~~~~ 209 (449)
T PRK05291 133 DAKTEAA-ARLALRQLQGALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKI--LEKLEELIAELEALLASARQG 209 (449)
T ss_pred hCCCHHH-HHHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 999999999999988777755 4333 335555556666667 777888888777644311
Q ss_pred --ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 117 --INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 117 --~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
....++|+++|+||||||||+|+|++.+.+++++.++ +|+|.....+.+++..+.+|||||+.. +.+.......
T Consensus 210 ~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g--tT~d~~~~~i~~~g~~i~l~DT~G~~~--~~~~ie~~gi 285 (449)
T PRK05291 210 EILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAG--TTRDVIEEHINLDGIPLRLIDTAGIRE--TDDEVEKIGI 285 (449)
T ss_pred HHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--cccccEEEEEEECCeEEEEEeCCCCCC--CccHHHHHHH
Confidence 1234799999999999999999999988778888888 999999999999999999999999973 2222222234
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..+..++..+|++++|+|++++.+..+..+.. . ..++|+++|+||+|+....... ...+ .+++++||
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~---~-~~~~piiiV~NK~DL~~~~~~~--------~~~~-~~~i~iSA 352 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDDEILE---E-LKDKPVIVVLNKADLTGEIDLE--------EENG-KPVIRISA 352 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHHHHHH---h-cCCCCcEEEEEhhhccccchhh--------hccC-CceEEEEe
Confidence 55778899999999999999988776544322 2 3478999999999997542211 1122 36799999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|+++|+++|.+.+.
T Consensus 353 ktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 353 KTGEGIDELREAIKELAF 370 (449)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 999999999999987664
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=206.74 Aligned_cols=165 Identities=26% Similarity=0.363 Sum_probs=130.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
--|+++|+||||||||+|+|+|+..+++++.|.|||..+.+.+..++.++.++||||+...+ .....+....+..++.
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk--~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK--HALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc--hHHHHHHHHHHHHHhc
Confidence 46999999999999999999999999999999999999999999999999999999997763 2345677778889999
Q ss_pred hccEEEEEeccchh---------hHHh-cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 405 RAHVVALVLDAEEV---------RAVE-EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 405 ~ad~~llViD~~~~---------~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
.+|++++|+|+++. ..+. .+.|+++++||+|..+.... . .. +........ .+..++++||
T Consensus 85 dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~--l-~~----~~~~~~~~~---~f~~ivpiSA 154 (298)
T COG1159 85 DVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTV--L-LK----LIAFLKKLL---PFKEIVPISA 154 (298)
T ss_pred cCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHH--H-HH----HHHHHHhhC---CcceEEEeec
Confidence 99999999999985 2222 25799999999999876431 0 11 111222222 2448999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCChH
Q 007334 475 LEGRGRIAVMHQVIDTYQKWCLRLPTS 501 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~~~~~~~~~ 501 (607)
++|.|++.|.+.+...+.+.....|.+
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCCcCChh
Confidence 999999999999988776554444433
|
|
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-23 Score=215.50 Aligned_cols=161 Identities=29% Similarity=0.388 Sum_probs=132.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
-.+|+|+|.||||||||+|+|++.+.++|++.|| ||||.....+.++|+++.++||+|+... .+.......+....
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~G--TTRDviee~i~i~G~pv~l~DTAGiRet--~d~VE~iGIeRs~~ 292 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAG--TTRDVIEEDINLNGIPVRLVDTAGIRET--DDVVERIGIERAKK 292 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCC--CccceEEEEEEECCEEEEEEecCCcccC--ccHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999 9999999999999999999999999833 23344455677888
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
.+++||+|++|+|++.+.+..+..+.. ....++|+++|+||+|+......... ....+. ..+.+||++|+|
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~-~~i~iSa~t~~G 363 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE---LLPKKKPIIVVLNKADLVSKIELESE-----KLANGD-AIISISAKTGEG 363 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH---hcccCCCEEEEEechhcccccccchh-----hccCCC-ceEEEEecCccC
Confidence 999999999999999988888866666 22347899999999999875431111 111222 579999999999
Q ss_pred hHHHHHHhccchHH
Q 007334 280 MTELYEALRPSVED 293 (607)
Q Consensus 280 i~eL~~~i~~~l~~ 293 (607)
+++|.+.|.+.+..
T Consensus 364 l~~L~~~i~~~~~~ 377 (454)
T COG0486 364 LDALREAIKQLFGK 377 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887754
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-23 Score=209.60 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=125.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
.|+++|+||||||||+|+|++.+.+++++.++ ||++...+....++.++.+|||||+.... ......+...+..++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~--TTr~~i~~i~~~~~~qii~vDTPG~~~~~--~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQ--TTRNRISGIHTTGASQIIFIDTPGFHEKK--HSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCC--cccCcEEEEEEcCCcEEEEEECcCCCCCc--chHHHHHHHHHHHHH
Confidence 69999999999999999999999888888888 99988777766677789999999997431 122223445567788
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
..+|++++|+|++++.+.. ..+.+.+... +.|+++|+||+|+..... ............++.+++++||++|.|++
T Consensus 78 ~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGDG-EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred hhCCEEEEEEECCCCCchH-HHHHHHHHhc--CCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 9999999999999876554 4566666654 789999999999974321 11111122222345578999999999999
Q ss_pred HHHHHhccchHH
Q 007334 282 ELYEALRPSVED 293 (607)
Q Consensus 282 eL~~~i~~~l~~ 293 (607)
+|++.|.+.+++
T Consensus 154 ~L~~~l~~~l~~ 165 (270)
T TIGR00436 154 FLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHhCCC
Confidence 999999887754
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-23 Score=167.93 Aligned_cols=80 Identities=43% Similarity=0.720 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCCCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEe
Q 007334 497 RLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQR 576 (607)
Q Consensus 497 ~~~~~~l~~~l~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~ 576 (607)
+++|+.||+||++++..+++|..|+.+|++|++|++.+||||++|||+++.++++|+|||+|+||++|||.|+||+|.||
T Consensus 1 Ri~T~~LN~~l~~~~~~~~pp~~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~l~~R 80 (80)
T PF14714_consen 1 RISTSELNRFLQKALERHPPPSKGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIRLIFR 80 (80)
T ss_dssp ---HHHHHHHHHHHHCCS--SETTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--EEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEEEEeC
Confidence 57999999999999999988878899999999999999999999999999999999999999999999999999999986
|
|
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=184.53 Aligned_cols=161 Identities=19% Similarity=0.283 Sum_probs=134.4
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+++|.|+|.+|||||+|+.|+.+..+.. ....+...|+....+++.| .++++|||+|++ ++...
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e---~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE----------RFrti 74 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTE---SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE----------RFRTI 74 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcch---hhcceeeeEEEEEEeeecceEEEEEeeeccccH----------HHhhh
Confidence 36899999999999999999999877532 2233466788888887766 479999999998 88999
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+..|++.||+||+|+|++...++.. +..|+.+. ..+.|.++|+||||+...+.++.++....+..++...++++
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~--v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ET 152 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNN--VKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLET 152 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhh--HHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeec
Confidence 9999999999999999999877776 55666553 34679999999999999888888887777888888558999
Q ss_pred ecCCCCChHHHHHHhccchHHH
Q 007334 273 SAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~ 294 (607)
||+++.++++.|..|...+...
T Consensus 153 SAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 153 SAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred ccCCccCHHHHHHHHHHHHHHh
Confidence 9999999999999988776553
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=187.16 Aligned_cols=156 Identities=23% Similarity=0.285 Sum_probs=116.3
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
+...++++|++++|+|++++....+..+.+.+.....++|+|+|+||+|+.+... .......+........+++||++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~--~~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWV--TARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHH--HHHHHHHHhcCCcEEEEEeeccc
Confidence 3567889999999999999877777778888876544589999999999975321 11222222222111247899999
Q ss_pred CCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCC
Q 007334 277 GLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 356 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~ 356 (607)
|.|+++|++.|.+.+... .....++|+++|.||||||||+|+|.+.....+++++
T Consensus 80 ~~~~~~L~~~l~~~~~~~-------------------------~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~ 134 (157)
T cd01858 80 PFGKGSLIQLLRQFSKLH-------------------------SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP 134 (157)
T ss_pred cccHHHHHHHHHHHHhhh-------------------------ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC
Confidence 999999999987643210 0012468999999999999999999999889999999
Q ss_pred CceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 357 GLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 357 gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
|+|++..... .+..+.|+||||+
T Consensus 135 g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 135 GETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred CeeEeEEEEE---cCCCEEEEECcCC
Confidence 9999865432 2345899999995
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=204.81 Aligned_cols=155 Identities=24% Similarity=0.317 Sum_probs=116.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|+||||||||+|+|+|.+.+.+++.++||++.+.+....++.++.+|||||+.+... .........+..++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--SLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--hHHHHHHHHHHHHHhh
Confidence 68999999999999999999998888999999999988877777778899999999865421 1122233456678889
Q ss_pred ccEEEEEeccchh---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCC
Q 007334 406 AHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 476 (607)
Q Consensus 406 ad~~llViD~~~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~ 476 (607)
+|++++|+|+++. .....++|+++|+||+|+..... ..+.. ...... ....+++++||++
T Consensus 80 aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~---~~~~~-----~~~~~~---~~~~~v~~iSA~~ 148 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDK---LLPLI-----DKYAIL---EDFKDIVPISALT 148 (270)
T ss_pred CCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHH---HHHHH-----HHHHhh---cCCCceEEEecCC
Confidence 9999999999865 12235789999999999974321 11111 111111 1223799999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007334 477 GRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 477 g~gv~~l~~~i~~~~~~ 493 (607)
|.|++++++.+.+.+..
T Consensus 149 g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999999999887654
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-22 Score=182.84 Aligned_cols=156 Identities=41% Similarity=0.668 Sum_probs=126.1
Q ss_pred EEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc
Q 007334 124 MIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 203 (607)
Q Consensus 124 ~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 203 (607)
+++|.+|||||||+|+|++.+....+..++ +|++.........+..+.+|||||+....+ .....+...+...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPG--VTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCC--ceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHh
Confidence 589999999999999999987666666666 889888888888899999999999985433 2222344556677899
Q ss_pred cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHH
Q 007334 204 TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTEL 283 (607)
Q Consensus 204 ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL 283 (607)
+|++++|+|++++.+..+.++.++++.. +.|+++|+||+|+..... ....+..++..+++++||++|.|++++
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKS--KKPVILVVNKVDNIKEED-----EAAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhc--CCCEEEEEECcccCChHH-----HHHHHHhcCCCCeEEEecccCCCHHHH
Confidence 9999999999988877777788888776 689999999999976422 133445566667899999999999999
Q ss_pred HHHhccc
Q 007334 284 YEALRPS 290 (607)
Q Consensus 284 ~~~i~~~ 290 (607)
+++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998754
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=204.52 Aligned_cols=165 Identities=26% Similarity=0.314 Sum_probs=128.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|+||||||||+|+|++.+.+.++..++ +|++...+.+..++.++.+|||||+.... ..+...+......
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~--tTr~~~~~~~~~~~~qi~~~DTpG~~~~~--~~l~~~~~r~~~~ 127 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQ--TTRSIITGIITLKDTQVILYDTPGIFEPK--GSLEKAMVRCAWS 127 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCC--CccCcEEEEEEeCCeEEEEEECCCcCCCc--ccHHHHHHHHHHH
Confidence 4689999999999999999999998888877777 89998888888889999999999996322 1232344555666
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC-CCCcEEeecCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG-FGDPIAISAETGL 278 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~-~~~~i~iSA~~g~ 278 (607)
++..||++++|+|++++....+..+.+.++.. +.|.|+|+||+|+... ........+.... +..++++||++|.
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAktg~ 202 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSL--NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALSGK 202 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence 78999999999999887777766677777665 5788999999998643 1222333333332 3468999999999
Q ss_pred ChHHHHHHhccchHH
Q 007334 279 GMTELYEALRPSVED 293 (607)
Q Consensus 279 gi~eL~~~i~~~l~~ 293 (607)
|+++|+++|.+.+++
T Consensus 203 gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 203 NIDGLLEYITSKAKI 217 (339)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999887654
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-23 Score=215.92 Aligned_cols=277 Identities=15% Similarity=0.156 Sum_probs=179.0
Q ss_pred hhhhHHhhhhhcccccccccccccc-------CCCCCCCCCcchhhhhhhhhhhhhccccchhhhhhhhh-----ccccc
Q 007334 3 HSWVRAVLARKSSLGFGLFGRSISS-------STNPVNLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKC-----NLLPE 70 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~-----~~~~~ 70 (607)
-++||+|||||++|++.+|-..... -....|+..++..+|++..|++-. +.||..|+-. ....+
T Consensus 40 i~riR~fy~rkvk~~~~~~~~kL~~il~~FP~~~~ihPfy~dL~~~ly~~dhYk~a----Lgqv~~ak~lv~~vakdyvr 115 (620)
T KOG1490|consen 40 ISRIRQFYARKVKFTQTTLTEKLDDILQEFPKLNDIHPFYADLLNILYDRDHYKIA----LGQVSTAKHLVENVARDYVR 115 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchHHHHHHHhcccHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999998765443 222226666667888888888763 3444433311 00001
Q ss_pred ccccccccccc-------cCccCCCCCCCCCCccccccccccccCCcccccccccCCCEEEEecCCCCchhHHHHHhhcc
Q 007334 71 VPRGFCGVVQN-------EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 71 ~~~~~~~~~~~-------~g~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+-.-...+.+- -|.+.+.+......+ ..+.++++++..+.....+ .++++|+|+|||||||++|.++..
T Consensus 116 Llk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl---~yLeqVrqhl~rlPsIDp~-trTlllcG~PNVGKSSf~~~vtra 191 (620)
T KOG1490|consen 116 LLKYGDSLYRCKQLKRAALGRMATIIKRQKSSL---EYLEQVRQHLSRLPAIDPN-TRTLLVCGYPNVGKSSFNNKVTRA 191 (620)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHhcCCCCCCC-cCeEEEecCCCCCcHhhccccccc
Confidence 10011111110 222223222222233 3445555555555544443 589999999999999999999877
Q ss_pred ceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh-ccCEEEEEEecCC--CCCHh
Q 007334 144 REALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA-KTQFAIFMIDVRS--GLHPL 220 (607)
Q Consensus 144 ~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~ad~vl~VvD~s~--~~~~~ 220 (607)
+ +...|..+||+....+++++.-..|+++||||+.+....+.-.-++. .+.++. --.+|+|++|.|. |.+..
T Consensus 192 d---vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmq--sITALAHLraaVLYfmDLSe~CGySva 266 (620)
T KOG1490|consen 192 D---DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQ--IITALAHLRSAVLYFMDLSEMCGYSVA 266 (620)
T ss_pred c---cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHH--HHHHHHHhhhhheeeeechhhhCCCHH
Confidence 6 34455666999999999999999999999999985432221111222 222222 2246899999987 45554
Q ss_pred H-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHH--HHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 221 D-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA--GAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 221 ~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~--~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+ ..++..++.++.++|+|+|+||||.........+ +.......-+-.+++.+|+.+.+|+.++...-++.+-
T Consensus 267 ~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 267 AQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred HHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence 4 4577888888889999999999999986554332 2334444444337899999999999999887776553
|
|
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=201.14 Aligned_cols=172 Identities=26% Similarity=0.331 Sum_probs=125.0
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
+..+.++.|+|||+||||||||+|+|++.+.. ++++|+ ||++...+.+.+ ++.++.+|||||+........ ..
T Consensus 153 lelk~~adVglVG~PNaGKSTLln~ls~a~~~-va~ypf--TT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~---gL 226 (335)
T PRK12299 153 LELKLLADVGLVGLPNAGKSTLISAVSAAKPK-IADYPF--TTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGA---GL 226 (335)
T ss_pred EEEcccCCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCC--ceeCceEEEEEeCCCcEEEEEeCCCccCCCCccc---cH
Confidence 34455789999999999999999999987644 677887 999999999888 567899999999985433211 12
Q ss_pred HHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCc
Q 007334 194 AGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 194 ~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 269 (607)
....+.+++.++++++|+|+++..+.++.. +.+.|.... .++|+++|+||+|+..................+. ++
T Consensus 227 g~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~-~i 305 (335)
T PRK12299 227 GHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG-PV 305 (335)
T ss_pred HHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC-CE
Confidence 234456788999999999999765544432 444444321 3689999999999976432211112222233343 78
Q ss_pred EEeecCCCCChHHHHHHhccchHH
Q 007334 270 IAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++||++++|+++|+++|.+.+.+
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887653
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-22 Score=194.93 Aligned_cols=191 Identities=24% Similarity=0.281 Sum_probs=130.8
Q ss_pred CCCCCCCCCccccccccccccCCccccc--------ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceee
Q 007334 87 THVEPEPDGVVEDHKVKPLYEKPVDFTK--------IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTR 158 (607)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~ 158 (607)
++++.+.+.+ +.|++.+++++..+.+ +..+..++|+|+|++|||||||+|+|++... .+.+.++ .|.
T Consensus 2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~--~t~ 76 (204)
T cd01878 2 TQLETDRRLI--RERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLF--ATL 76 (204)
T ss_pred chHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHhhhhcCCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccc--eec
Confidence 4455555556 6666666665553332 1124568999999999999999999999763 2334444 666
Q ss_pred eeEEEEeeeCCe-eEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCC
Q 007334 159 DIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQI 235 (607)
Q Consensus 159 ~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~ 235 (607)
+.....+.+.+. .+.+|||||+....+. ... ..+..+...+..+|++++|+|++++.+..+. .+.+++... ..++
T Consensus 77 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~-~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (204)
T cd01878 77 DPTTRRLRLPDGREVLLTDTVGFIRDLPH-QLV-EAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDI 154 (204)
T ss_pred cceeEEEEecCCceEEEeCCCccccCCCH-HHH-HHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCC
Confidence 666666666554 8999999999644332 222 2233445567899999999999988766653 345566554 2368
Q ss_pred cEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 236 KPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 236 p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
|+++|+||+|+...... ..... ....+++++||++|.|++++++.|...
T Consensus 155 ~viiV~NK~Dl~~~~~~-----~~~~~-~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 155 PMILVLNKIDLLDDEEL-----EERLE-AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CEEEEEEccccCChHHH-----HHHhh-cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 99999999999764221 12222 233478999999999999999988754
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=180.21 Aligned_cols=163 Identities=20% Similarity=0.234 Sum_probs=137.9
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
.+...+|++||.+|||||+|+-++....+... ...+...|.....+.+++. .+++|||+|++ ++.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~---~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQe----------rf~ 75 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS---FISTIGIDFKIKTIELDGKKIKLQIWDTAGQE----------RFR 75 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCC---ccceEEEEEEEEEEEeCCeEEEEEEEEcccch----------hHH
Confidence 34468999999999999999999998765322 2233667787777777764 68999999999 899
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCC-CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~-~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
.++..|++.|+++++|||+++..+.++. .|.+++.+..+ +.|.++|+||+|+...+.+..+.....+..+|. .++++
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~Et 154 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFET 154 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEEc
Confidence 9999999999999999999998888873 36677777644 789999999999999888888888888888898 89999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.||++.|-.+.+.+..
T Consensus 155 SAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 155 SAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred cccCCCCHHHHHHHHHHHHHh
Confidence 999999999999999877754
|
|
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=175.43 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=133.9
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..+++.++|.+|||||+|+.+++.+++..+.+. +...+.....+.+++ .++++|||+|++ .+.+.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~---TiGvefg~r~~~id~k~IKlqiwDtaGqe----------~frsv 71 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDL---TIGVEFGARMVTIDGKQIKLQIWDTAGQE----------SFRSV 71 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccc---eeeeeeceeEEEEcCceEEEEEEecCCcH----------HHHHH
Confidence 357899999999999999999999987655542 255666666666655 579999999999 78889
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+.+|++.|.++|+|+|++...++.. +..||.+. .+++.+++++||+|+...+.+..++..+.+.+.|+ .++++
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~h--L~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmET 148 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNH--LTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMET 148 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHH--HHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehh
Confidence 9999999999999999998877775 44565443 46889999999999999998888988889999998 77899
Q ss_pred ecCCCCChHHHHHHhccchHHH
Q 007334 273 SAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~ 294 (607)
||++++|++|.|..+...+-..
T Consensus 149 Sakt~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 149 SAKTAENVEEAFINTAKEIYRK 170 (216)
T ss_pred hhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999998877666543
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=180.12 Aligned_cols=161 Identities=45% Similarity=0.699 Sum_probs=123.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc-ccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~ 402 (607)
+++|+++|.+|+|||||+|+|++.......+.+++|++.....+..++..+.+|||||+.+... ....+.+....+..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4789999999999999999999887677888999999998888888899999999999876521 223344555566677
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
+..+|++++|+|++++ .....++|+++++||+|+.+... ...+.+ ...+.+.+....+.+++++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDS--KTMKEF----KKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccH--HHHHHH----HHHHHhhcccccCCceEEE
Confidence 8899999999999875 22335799999999999976521 111221 2233334444446789999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 007334 473 SALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~ 490 (607)
||++|.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=181.16 Aligned_cols=163 Identities=25% Similarity=0.244 Sum_probs=111.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
|+|+++|++|||||||+|+|++.... +...++ +|.+...+.....+.++.+|||||+......... .+.......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~--~~~~~~~~~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPF--TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERN--TIEMQAITA 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCC--cccceeEEEEccCceEEEEEECCCcCCccccCCc--hHHHHHHHH
Confidence 68999999999999999999987653 333455 7888887777777889999999999632111110 111111222
Q ss_pred -hhccCEEEEEEecCCCCCH--hH-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 201 -LAKTQFAIFMIDVRSGLHP--LD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 201 -~~~ad~vl~VvD~s~~~~~--~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
...+|++++|+|+++..+. .+ .++...+++...+.|+++|+||+|+....... . ...+......+++++||++
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~--~-~~~~~~~~~~~~~~~Sa~~ 152 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS--E-IEEEEELEGEEVLKISTLT 152 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH--H-HHHhhhhccCceEEEEecc
Confidence 2346899999999876542 22 33555555444478999999999997643221 1 2222333334789999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|.|+++++++|.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999987654
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=197.67 Aligned_cols=166 Identities=24% Similarity=0.376 Sum_probs=127.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
..|+|+|.||||||||+|+|++.+.+.++..+. +|++...+....++.++.+|||||+.... ......+...+...
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~--tt~~~i~~i~~~~~~qi~~iDTPG~~~~~--~~l~~~~~~~~~~~ 81 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ--TTRHRIRGIVTEDDAQIIFVDTPGIHKPK--RALNRAMNKAAWSS 81 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCC--cccccEEEEEEcCCceEEEEECCCCCCch--hHHHHHHHHHHHHH
Confidence 469999999999999999999999888888887 88888777666666899999999997432 12222344566678
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHH-HhcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES-LMLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-~~~~~~~~i~iSA~~g~g 279 (607)
+..+|++++|+|++++.+..+..+.+.+... +.|+++|+||+|+...... .......+ ...++.+++++||++|.|
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~~-l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGDEFILEKLKKV--KTPVILVLNKIDLVKDKEE-LLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhHHHHHHHHhhc--CCCEEEEEECCcCCCCHHH-HHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 8999999999999997777776777777654 6899999999999843211 11122222 224556789999999999
Q ss_pred hHHHHHHhccchHH
Q 007334 280 MTELYEALRPSVED 293 (607)
Q Consensus 280 i~eL~~~i~~~l~~ 293 (607)
+++|++.|.+.+++
T Consensus 159 v~~L~~~L~~~l~~ 172 (292)
T PRK00089 159 VDELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999887753
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-21 Score=176.91 Aligned_cols=171 Identities=23% Similarity=0.276 Sum_probs=133.8
Q ss_pred ccccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHH
Q 007334 113 TKIDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILD 191 (607)
Q Consensus 113 ~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~ 191 (607)
...+.+..+.||++|++|||||||+|+|++.+ .+.++..|| .|+...+-.+. + .+.++|.||+....-+.....
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPG--rTq~iNff~~~--~-~~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPG--RTQLINFFEVD--D-ELRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCC--ccceeEEEEec--C-cEEEEeCCCcccccCCHHHHH
Confidence 44566678999999999999999999999965 589999999 88888775544 2 389999999996655555666
Q ss_pred HHHHHHHHHhhc---cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHH-HHHhcC--
Q 007334 192 RTAGMTANVLAK---TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAA-ESLMLG-- 265 (607)
Q Consensus 192 ~~~~~~~~~~~~---ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~-~~~~~~-- 265 (607)
++...+.+|++. -.++++++|++++....|.++.+|+.+. ++|+++|+||+|..+.... ..... ....++
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~--~k~l~~v~~~l~~~ 167 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL--GIPVIVVLTKADKLKKSER--NKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEccccCChhHH--HHHHHHHHHHhcCC
Confidence 777778888864 3488999999999999999999999998 8999999999999985321 11111 111222
Q ss_pred C-CC--cEEeecCCCCChHHHHHHhccchH
Q 007334 266 F-GD--PIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 266 ~-~~--~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
. .. ++..|+.++.|+++|.+.|.+.+.
T Consensus 168 ~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 168 PPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 1 12 678999999999999999887654
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-21 Score=178.58 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=109.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeecc--CCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYN--TPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~--~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.|+++|++|||||||+|+|++........ .++ +|.+..+....+. +..+.+|||||+. ++.....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~DtpG~~----------~~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRG--ITIDLGFAYLDLPSGKRLGFIDVPGHE----------KFIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccC--ceEEeeeEEEEecCCcEEEEEECCChH----------HHHHHHH
Confidence 69999999999999999999754322221 233 6777776666665 7899999999987 4545566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC--cHHHHHHHHHhc--CCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAAESLML--GFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--~~~~~~~~~~~~--~~~~~i~iSA 274 (607)
.++..+|++++|+|++++...+..+...+++.. ...|+++|+||+|+...... ........+... ...+++++||
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSA 148 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeC
Confidence 778899999999999886655554444445443 22499999999999753210 011222222221 1237899999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|++++++.+..
T Consensus 149 ~~~~~v~~l~~~l~~ 163 (164)
T cd04171 149 VTGEGIEELKEYLDE 163 (164)
T ss_pred CCCcCHHHHHHHHhh
Confidence 999999999998753
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-22 Score=180.43 Aligned_cols=160 Identities=21% Similarity=0.246 Sum_probs=126.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee--eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~--v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|..|||||||+-|+....+.. .+.....+.|....... ...+|.||||+|++ ++....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~---~~ikfeIWDTAGQE----------Ry~sla 71 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDD---NTIKFEIWDTAGQE----------RYHSLA 71 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCC---cEEEEEEEEcCCcc----------cccccc
Confidence 3689999999999999999999877633 33333344554443321 24789999999999 666777
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..|+++|+++|+|+|+++..++.. +.+.+-|++. .+++-+.+|+||+|+...+.+..++....+...|+ .++++||+
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-l~~ETSAK 150 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGL-LFFETSAK 150 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCC-EEEEEecc
Confidence 789999999999999999877776 2344444443 34555678999999999888888888888888888 88999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++|..|.+.++.
T Consensus 151 Tg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 151 TGENVNEIFQAIAEKLPC 168 (200)
T ss_pred cccCHHHHHHHHHHhccC
Confidence 999999999999988865
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=177.29 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=115.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||++++.+........ + +.+.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~--t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~ 69 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-N--TIGVDFTMKTLEIEGKRVKLQIWDTAGQE----------RFRTIT 69 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-C--ccceEEEEEEEEECCEEEEEEEEECCChH----------HHHHHH
Confidence 4689999999999999999998765422211 1 133444445555565 578999999987 555667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..............+...++++||+
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAK 149 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECC
Confidence 7788999999999999987665542 233333332 34789999999999987654444444455555665567999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++++.|.+.
T Consensus 150 ~~~~v~~~~~~l~~~ 164 (165)
T cd01864 150 ESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998753
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-21 Score=176.94 Aligned_cols=151 Identities=21% Similarity=0.228 Sum_probs=118.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||.++|..|||||+|+.++.+.. +.-+....+.+|.....++++|. +++||||||+.+++ ..+.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~-f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr----------tit~ 76 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDT-FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR----------TITS 76 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCC-cchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh----------hhhH
Confidence 45899999999999999999999663 44445556678888888888887 57899999976553 3456
Q ss_pred HHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++++||++|+|||.++. .....++|.++|+||+|+.+.. .+..+..+.++...+
T Consensus 77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~-----------~v~~~~a~~fa~~~~ 145 (205)
T KOG0084|consen 77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKR-----------VVSTEEAQEFADELG 145 (205)
T ss_pred hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhhe-----------ecCHHHHHHHHHhcC
Confidence 899999999999999985 1123578999999999998752 233444455556667
Q ss_pred CC-EEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 467 IP-VVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 467 ~~-~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
.| ++++|||.+.||++.|..+...+.+..
T Consensus 146 ~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 146 IPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 88 999999999999999999887765433
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=180.62 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=122.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|..|||||||++++....+. .... .+.+.+.....+..++ ..+.+|||+|+. ++...+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~--~~~~-~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~l~ 72 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTE--SPYG-YNMGIDYKTTTILLDGRRVKLQLWDTSGQG----------RFCTIF 72 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCC-CcceeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 468999999999999999999976542 1111 1134555445555555 678999999998 566667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..+++.+|++|+|+|++++.+..+.. +.+.+.+..++.|+|+|+||+|+...+....++....+...+. +++++||++
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~-~~~e~SAk~ 151 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFEVSPLC 151 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC-EEEEecCCC
Confidence 78899999999999999988877733 4444444456899999999999977655555666666666776 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++|+.|.+.+..
T Consensus 152 g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 152 NFNITESFTELARIVLM 168 (189)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999876543
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=182.32 Aligned_cols=158 Identities=21% Similarity=0.239 Sum_probs=118.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.|+++|.+|||||||++++....+. .... .+++.+.....+.+++ ..+.+|||+|++ ++...+..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~--~~~~-~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe----------~~~~l~~~ 68 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC--EACK-SGVGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSITSA 68 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC--CcCC-CcceeEEEEEEEEECCEEEEEEEEeCCCch----------hhHHHHHH
Confidence 5899999999999999999987652 2222 1244565555666665 678999999998 56667788
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-CCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~i~iSA~~ 276 (607)
+++.||++|+|+|++++.+..+.. +.+.+++. ..+.|+++|+||+|+...+.+........+... +. .++++||++
T Consensus 69 y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~-~~~etSAkt 147 (202)
T cd04120 69 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGM-RFCEASAKD 147 (202)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC-EEEEecCCC
Confidence 999999999999999988777632 44444443 347899999999999765555444444444443 44 689999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++|++|...+..
T Consensus 148 g~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 148 NFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999876644
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-21 Score=177.21 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=110.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|||||||++++++..+. ..... ++.+.....+..++ ..+.+|||||++ ++.....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDP--TIEDSYRKQIEVDGQQCMLEILDTAGTE----------QFTAMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCC--chhhhEEEEEEECCEEEEEEEEECCCcc----------ccchHHH
Confidence 57999999999999999999976542 22222 44444444455555 457789999987 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+. .+...+.+. ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGC-PFYETSAK 146 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCC-eEEEecCC
Confidence 678999999999999987666542 234444432 24689999999999876544333333333344453 78999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|+++++++|.+.
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (163)
T cd04136 147 SKINVDEVFADLVRQ 161 (163)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=175.99 Aligned_cols=156 Identities=21% Similarity=0.275 Sum_probs=112.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.++.... .+. ++.+.....+... ...+.+|||||+. ++.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~g~~----------~~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAF-VST--VGIDFKVKTVFRNDKRVKLQIWDTAGQE----------RYRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc--eeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHH
Confidence 57999999999999999999987652211 121 2222222233333 3579999999987 4555667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---C-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---A-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.+++.+|++++|+|+++..+.+. +.+|+... . .+.|+++|+||+|+...+....+........+++ +++++||
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 145 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNA--VQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASA 145 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEEC
Confidence 88999999999999987655443 34444432 2 4689999999999987654444444444556666 7899999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|++++++.|.+.+.
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 146 KENINVKQVFERLVDIIC 163 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-22 Score=194.98 Aligned_cols=269 Identities=20% Similarity=0.272 Sum_probs=169.6
Q ss_pred hhhHHhhhhhcccccccccccccc----CCCCC---CCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccc-
Q 007334 4 SWVRAVLARKSSLGFGLFGRSISS----STNPV---NLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGF- 75 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~- 75 (607)
.++|.||+++++.....+.-.... =++-. ++......+++...+++.+-+ .+.+|.. +.-++.+.+
T Consensus 41 ~kar~~e~~rv~t~~~i~~d~l~~iv~~~P~id~LhpFY~eLidvl~d~d~~k~sLs----~v~~A~~--~i~~l~~eYi 114 (346)
T COG1084 41 VKAREFEIRRVKTASNIVRDRLDKIVERFPSLDDLHPFYRELIDVLVDIDHLKISLS----AVSWASK--IIEKLAREYI 114 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccChHHHHHHHHHhCHHHHHHHHH----HHHHHHH--HHHHHHHHHH
Confidence 467889999999988776544322 11222 333333466666666655322 2222221 011111111
Q ss_pred ------------cccccc-cCccCCCCCCCCCCccccccccccccCCcccccccccCCCEEEEecCCCCchhHHHHHhhc
Q 007334 76 ------------CGVVQN-EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDINLLPTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 76 ------------~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
..+.|+ .|-..+.+..-.+.+ ..+.+.+..+.+++.... ..|+|+|.|+||||||||++++++
T Consensus 115 ~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L---~fL~~~r~~l~~LP~Idp-~~pTivVaG~PNVGKSSlv~~lT~ 190 (346)
T COG1084 115 RLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDL---EFLRKARDHLKKLPAIDP-DLPTIVVAGYPNVGKSSLVRKLTT 190 (346)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHhcCCCCCC-CCCeEEEecCCCCcHHHHHHHHhc
Confidence 112222 232222333222223 333344445544444443 379999999999999999999999
Q ss_pred cceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh-ccCEEEEEEecCC--CCCH
Q 007334 143 RREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA-KTQFAIFMIDVRS--GLHP 219 (607)
Q Consensus 143 ~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-~ad~vl~VvD~s~--~~~~ 219 (607)
.+.. +.++|+ ||+....|+++.++.++++|||||+.+.. .. ..+....+...+++ -+++|+|++|.|. +.+.
T Consensus 191 AkpE-vA~YPF--TTK~i~vGhfe~~~~R~QvIDTPGlLDRP-l~-ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~l 265 (346)
T COG1084 191 AKPE-VAPYPF--TTKGIHVGHFERGYLRIQVIDTPGLLDRP-LE-ERNEIERQAILALRHLAGVILFLFDPSETCGYSL 265 (346)
T ss_pred CCCc-cCCCCc--cccceeEeeeecCCceEEEecCCcccCCC-hH-HhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCH
Confidence 8754 556776 99999999999999999999999998443 22 22234444444554 4679999999987 4555
Q ss_pred hH-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 220 LD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 220 ~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
++ ..+++.++..+. .|+++|+||+|....+. .++........|..++..+|+..+.+++.+.+.+...
T Consensus 266 E~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 266 EEQISLLEEIKELFK-APIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred HHHHHHHHHHHHhcC-CCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 54 446677777664 89999999999885432 2333334555566568899999999999888877655
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.5e-21 Score=206.74 Aligned_cols=169 Identities=25% Similarity=0.350 Sum_probs=127.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH--HH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG--MT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~--~~ 197 (607)
.++|+|+|+||||||||+|+|++.....++..++ +|+|.....+.+++..+.+|||||+.......... +++. .+
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~g--tT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~-e~~~~~~~ 287 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAG--TTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGH-EYYASLRT 287 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC--ccCCcceEEEEECCEEEEEEECCCccccccccchH-HHHHHHHH
Confidence 5799999999999999999999988777788888 99999888888889999999999986432211111 2222 23
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc-HH-HHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LA-GAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-~~-~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..||++++|+|++++.+..+..++..+... ++|+|+|+||+|+....... .. .....+....+.+++++||+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~--~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk 365 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA--GRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK 365 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence 4578999999999999999999987777666654 78999999999997532110 01 11111222334477999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.++.
T Consensus 366 ~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 366 TGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
|
|
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=174.47 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=111.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|++++... +..... ++.+.......+.+ ..+.+|||||+. ++.....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 68 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDP--TIEDSYTKQCEIDGQWAILDILDTAGQE----------EFSAMRE 68 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCC--CccceEEEEEEECCEEEEEEEEECCCCc----------chhHHHH
Confidence 5899999999999999999998654 233333 44444444444554 468899999987 4445566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+..................+. +++++||+
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 147 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIETSAK 147 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEeeCC
Confidence 788999999999999987665542 222223222 24789999999999976544333344444455566 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|...+
T Consensus 148 ~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 148 DRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999987643
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=173.60 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=115.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|++|||||||+|+|++.+... ...+. ++.+.....+..++ ..+.+|||||.. .+......
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~ 68 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQAT--IGIDFLSKTMYLEDKTVRLQLWDTAGQE----------RFRSLIPS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCc--eeeeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHHH
Confidence 79999999999999999999887543 33444 67777666666655 468999999987 55566777
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHH-hhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLR-KHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~-~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+..+.. +...+. ....+.|+++|+||+|+..................+. .++++||++|
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA-MFIETSAKAG 147 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEEeCCCC
Confidence 899999999999999876665522 333222 2223589999999999965443333433444445554 6899999999
Q ss_pred CChHHHHHHhccc
Q 007334 278 LGMTELYEALRPS 290 (607)
Q Consensus 278 ~gi~eL~~~i~~~ 290 (607)
.|+++++++|.+.
T Consensus 148 ~~v~~l~~~i~~~ 160 (161)
T cd01861 148 HNVKELFRKIASA 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998754
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-20 Score=183.15 Aligned_cols=158 Identities=20% Similarity=0.209 Sum_probs=115.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|++|||||||+|+|++..+... ..+ +.+.|.....+.+. ...+.||||||+. .+.....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~-~~~--T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~----------~~~~l~~ 68 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKS-YKQ--TIGLDFFSKRVTLPGNLNVTLQVWDIGGQS----------IGGKMLD 68 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC-CCC--ceeEEEEEEEEEeCCCCEEEEEEEECCCcH----------HHHHHHH
Confidence 799999999999999999998764221 122 24556655555553 3688999999986 4455666
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC----CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA----PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~----~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.++..+|++|+|+|++++.+.++.. +...+.+.. .+.|+++|+||+|+...+....+.........+. +.+++|
T Consensus 69 ~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~~iS 147 (215)
T cd04109 69 KYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESCLVS 147 (215)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEE
Confidence 7889999999999999877766532 444444432 2357899999999976555444444445555665 689999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|+|++++++.|...+..
T Consensus 148 Aktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 148 AKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876643
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=171.79 Aligned_cols=157 Identities=18% Similarity=0.300 Sum_probs=128.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|..+||||||+++++-..+... -.++...|+....+.+.+ +.++||||+|++ +|.....
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~---YqATIGiDFlskt~~l~d~~vrLQlWDTAGQE----------RFrslip 89 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIP 89 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhccc---ccceeeeEEEEEEEEEcCcEEEEEEEecccHH----------HHhhhhh
Confidence 6899999999999999999998765322 223466777777777665 478999999999 8999999
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHh----hCC-CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK----HAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~----~~~-~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.|+++|.++|.|+|+++..+.++ .-+||.+ ..+ +.-+++|+||.||.+.++...++....+..++. .++++|
T Consensus 90 sY~Rds~vaviVyDit~~~Sfe~--t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~f~ets 166 (221)
T KOG0094|consen 90 SYIRDSSVAVIVYDITDRNSFEN--TSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-EFIETS 166 (221)
T ss_pred hhccCCeEEEEEEeccccchHHH--HHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-EEEEec
Confidence 99999999999999999888887 3344433 333 356789999999999887777776677777777 889999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|+.|+||.+||..|...++.
T Consensus 167 ak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 167 AKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred ccCCCCHHHHHHHHHHhccC
Confidence 99999999999999888765
|
|
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-20 Score=175.78 Aligned_cols=154 Identities=21% Similarity=0.231 Sum_probs=107.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEE--EeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREG--LAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|++++..+.... .+ ++...... ........+.+|||||+. ++.....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~-~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESY-IP---TIEDTYRQVISCSKNICTLQITDTTGSH----------QFPAMQR 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCc-CC---cchheEEEEEEECCEEEEEEEEECCCCC----------cchHHHH
Confidence 47999999999999999999987642111 11 11111111 222234678999999998 3444455
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.++..+|++++|+|++++.+... ..+.+++++. .++.|+++|+||+|+...+..............+. .++++|
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S 146 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETS 146 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCC-cEEEee
Confidence 67889999999999998777665 2344555543 24789999999999976444433333334444454 679999
Q ss_pred cCCCCChHHHHHHhcc
Q 007334 274 AETGLGMTELYEALRP 289 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~ 289 (607)
|++|.|+++++++|.+
T Consensus 147 A~~g~~v~~~f~~l~~ 162 (165)
T cd04140 147 AKTNHNVQELFQELLN 162 (165)
T ss_pred cCCCCCHHHHHHHHHh
Confidence 9999999999999864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=173.40 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=111.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC----CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG----DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+|+++|.+|||||||+|++++..+.. ...+. .+.+.....+.+. ...+.+|||||+. ++...+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKT--IGVDFLEKQIFLRQSDEDVRLMLWDTAGQE----------EFDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCc--EEEEEEEEEEEEcCCCCEEEEEEeeCCchH----------HHHHhH
Confidence 69999999999999999999875421 11222 3444433333333 4679999999987 555666
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..+++.+|++++|+|++++.+.... .+...+.....+.|+++|+||+|+........++........++ +++++||++
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRTSVKD 147 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCC
Confidence 7789999999999999987655542 12233333345899999999999987655444444445556676 789999999
Q ss_pred CCChHHHHHHhcc
Q 007334 277 GLGMTELYEALRP 289 (607)
Q Consensus 277 g~gi~eL~~~i~~ 289 (607)
|.|++++++.|.+
T Consensus 148 ~~~v~~l~~~l~~ 160 (162)
T cd04106 148 DFNVTELFEYLAE 160 (162)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998864
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-21 Score=197.42 Aligned_cols=157 Identities=24% Similarity=0.299 Sum_probs=117.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+.++|+++|+||||||||+|+|++.....+++.++||++...+.+.+++.++.+|||||+.+... .........+..+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~--~l~~~~~r~~~~~ 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG--SLEKAMVRCAWSS 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc--cHHHHHHHHHHHH
Confidence 45799999999999999999999988788899999999998888889999999999999854321 1222233445567
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
+..||++|+|+|+++. .....+.|.|+|+||+|+.+. . ...+. +.+... ....+++++
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~----~~~~~----~~l~~~---~~~~~i~~i 196 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-Y----LNDIK----AFLTEN---HPDSLLFPI 196 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-c----HHHHH----HHHHhc---CCCcEEEEE
Confidence 8899999999998764 112346788999999998643 1 11111 111111 123579999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 007334 473 SALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~~~ 493 (607)
||++|.|++++++.+...+..
T Consensus 197 SAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 197 SALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred eccCccCHHHHHHHHHHhCCC
Confidence 999999999999999887554
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-20 Score=174.00 Aligned_cols=155 Identities=20% Similarity=0.299 Sum_probs=113.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++++..+... ..+. .+.+.....+...+ ..+.+|||||+. ++.....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES-YIST--IGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCc--cceeEEEEEEEECCEEEEEEEEECCCcH----------hHHHHHH
Confidence 5899999999999999999998765321 1222 34444444444444 478999999987 5556667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHh---hC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---HA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~---~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.+++.+|++++|+|++++.+..+ +.+|+.. .. ++.|+++|+||+|+..................+. +++++||
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~--l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 146 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNN--VKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETSA 146 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHh--HHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEEC
Confidence 78899999999999998655554 3334433 22 4689999999999876554444444445555566 7899999
Q ss_pred CCCCChHHHHHHhccch
Q 007334 275 ETGLGMTELYEALRPSV 291 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l 291 (607)
++|.|++++++.|.+.+
T Consensus 147 ~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 147 KNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999988755
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=203.59 Aligned_cols=153 Identities=27% Similarity=0.398 Sum_probs=126.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.+||++|.||||||||+|+|+|. +..++++||+|++..++.+.+.+.++.++|+||.+........| .-+++++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~-~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE----~Var~~ll 78 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA-NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDE----KVARDFLL 78 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc-CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchH----HHHHHHHh
Confidence 56999999999999999999987 58999999999999999999999999999999998874332222 23445554
Q ss_pred --hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 405 --RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 405 --~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
++|+++.|+|+++. +..+.++|+|+++|++|+.+......+.+++.+. .++|++++||
T Consensus 79 ~~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~------------LGvPVv~tvA 146 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKL------------LGVPVVPTVA 146 (653)
T ss_pred cCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHH------------hCCCEEEEEe
Confidence 58999999999986 5678899999999999998776554444444322 3899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~~ 494 (607)
++|.|++++++++.+..+..
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 147 KRGEGLEELKRAIIELAESK 166 (653)
T ss_pred ecCCCHHHHHHHHHHhcccc
Confidence 99999999999998765443
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-20 Score=174.52 Aligned_cols=156 Identities=23% Similarity=0.301 Sum_probs=112.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
|+|+|+|++|||||||+|+|++.+.... ..++ +|.+.....+... +..+.+|||||+. .+...+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~--~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGG--ITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc-cCCC--eEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHH
Confidence 6799999999999999999998765432 2333 6766655555553 6789999999986 344455
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-----cC-CCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LG-FGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-----~~-~~~~i~ 271 (607)
...+..+|++++|+|++++..........+++.. ++|+++|+||+|+................. .+ ..++++
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA--NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVP 145 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEE
Confidence 5677899999999999987766666666666654 789999999999875321111111111111 11 126799
Q ss_pred eecCCCCChHHHHHHhccch
Q 007334 272 ISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l 291 (607)
+||++|+|+++|+++|.+..
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 146 TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred eecccCCCHHHHHHHHHHhh
Confidence 99999999999999987653
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-20 Score=173.52 Aligned_cols=155 Identities=24% Similarity=0.316 Sum_probs=112.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|++|||||||+|+|++.+..... .+. ++.+.....+...+ ..+.+|||||+. ++....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~ 69 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KST--IGVEFATRSIQIDGKTIKAQIWDTAGQE----------RYRAIT 69 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc--cceEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHH
Confidence 468999999999999999999987653222 232 44455455555555 468999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHH---hhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLR---KHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~---~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..++..++++++|+|++++.+..+ +.+|+. +.. .+.|+++|+||+|+...+....+.........+. .++++|
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 146 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETS 146 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEE
Confidence 678899999999999997666554 334443 332 2589999999999976544444444444444454 689999
Q ss_pred cCCCCChHHHHHHhccc
Q 007334 274 AETGLGMTELYEALRPS 290 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~ 290 (607)
|++|.|++++++.|...
T Consensus 147 a~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 147 ALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998754
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=176.30 Aligned_cols=150 Identities=20% Similarity=0.174 Sum_probs=121.2
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
+..+||+++|.+|||||+++-++.. +.+..+.......|.....++.+|. .+++|||+|+.++. ..+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d-~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~----------ti~ 78 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSD-DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR----------TIT 78 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhh-ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH----------HHH
Confidence 3468999999999999999999984 4455666666778888888888887 45699999976553 345
Q ss_pred HHHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 400 RKNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
..|+++|+++++|||.++. .....+.|.++|+||+|+... +.++.+.++.++...
T Consensus 79 ~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~-----------R~V~~e~ge~lA~e~ 147 (207)
T KOG0078|consen 79 TAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK-----------RQVSKERGEALAREY 147 (207)
T ss_pred HHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccc-----------ccccHHHHHHHHHHh
Confidence 6899999999999999985 222358999999999999774 344555566666667
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++|||+|.||++.|..+.+.+..
T Consensus 148 G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 148 GIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999887664
|
|
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=174.11 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=110.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|++++.... ..... ++.+........++ ..+.+|||||+. ++......
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~~~ 67 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDP--TIEDSYRKQIEIDGEVCLLDILDTAGQE----------EFSAMRDQ 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCC--chhhhEEEEEEECCEEEEEEEEECCCcc----------cchHHHHH
Confidence 7999999999999999999987643 22222 34444333444444 578899999988 44445566
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
++..+|++++|+|++++.+.... .+..++.+. ..+.|+++|+||+|+...+....+.........+. +++++||++
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 146 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETSAKE 146 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC-EEEEeecCC
Confidence 78899999999999987665542 233333332 23689999999999976544333333334444554 789999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|++++++.|.+.+.
T Consensus 147 ~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 147 RVNVDEAFYDLVREIR 162 (164)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999986553
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=194.64 Aligned_cols=154 Identities=21% Similarity=0.292 Sum_probs=114.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..|+|||.||||||||+|+|++.. ..++++|+||+++..+.+.+ ++.++.+|||||+.+..... ..+ ....++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~--~gL-g~~flrhi 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG--AGL-GHRFLKHI 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc--ccH-HHHHHHHh
Confidence 479999999999999999999864 56899999999999999888 56789999999997642110 011 23456788
Q ss_pred hhccEEEEEeccchh----------h-H--H---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV----------R-A--V---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~-~--~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.++|++|+|+|+++. . . . ..++|+++|+||+|+.+..... ... . ..... ..+.
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~---~~~---~-~~~~~----~~~~ 303 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER---EKR---A-ALELA----ALGG 303 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH---HHH---H-HHHHH----hcCC
Confidence 899999999999853 0 1 1 1368999999999997542211 110 0 01111 1246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++++|++++++.+.+.+.+
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999876543
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=174.74 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=116.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++.+..+.. .... +..+.....+..++ ..+.+|||||+. ++.....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~~ 68 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD--YHDP--TIEDAYKQQARIDNEPALLDILDTAGQA----------EFTAMRD 68 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC--CcCC--cccceEEEEEEECCEEEEEEEEeCCCch----------hhHHHhH
Confidence 479999999999999999999876531 1111 33333333344445 568999999987 4556667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..... +..++.+. ..+.|+++|+||+|+...+....++....+...+. +++++||+
T Consensus 69 ~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa~ 147 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFETSAA 147 (172)
T ss_pred HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEEecC
Confidence 7889999999999999988877733 44555543 34789999999999876655555555555555666 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++|++|...+-
T Consensus 148 ~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 148 LRHYIDDAFHGLVREIR 164 (172)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999986554
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=178.97 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=110.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+|+|.+|||||||++++++.++.... .|. ++.+.....+.+++ ..+.+|||||....... ...++......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~-~pt--~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~--~~~e~~~~~~~ 76 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEY-IPT--EHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT--AGQEWMDPRFR 76 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCccc-CCc--cccccceeEEEECCEEEEEEEEeCCCcccCCcc--chhHHHHHHHh
Confidence 6999999999999999999987653322 232 33344334444556 56889999998643211 11123333456
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcCCCCcEEee
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLGFGDPIAIS 273 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~i~iS 273 (607)
++..+|++|+|+|++++.+.+.. .+.+.+... ..+.|+++|+||+|+...+....+....... ..+. +++++|
T Consensus 77 ~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~e~S 155 (198)
T cd04142 77 GLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYLECS 155 (198)
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEEEec
Confidence 68899999999999987666652 233444332 2468999999999997654433333222222 2344 689999
Q ss_pred cCCCCChHHHHHHhccch
Q 007334 274 AETGLGMTELYEALRPSV 291 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l 291 (607)
|++|.|+++||+.+...+
T Consensus 156 ak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 156 AKYNWHILLLFKELLISA 173 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999888654
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=175.95 Aligned_cols=161 Identities=25% Similarity=0.239 Sum_probs=112.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe-eEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.|+|||++|||||||+|+|++.+. .++..++ +|++...+.+...+. .+.+|||||+........ .........
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~---~~~~~~~~~ 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPF--TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGK---GLGHRFLRH 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCc--cccCCcceEEEcCCCCeEEEEecCcccCcccccC---CchHHHHHH
Confidence 589999999999999999998654 4566666 777777777777776 999999999863221110 112233445
Q ss_pred hhccCEEEEEEecCCC-CCHhHH-HHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-CCCCcEEeec
Q 007334 201 LAKTQFAIFMIDVRSG-LHPLDL-EVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPIAISA 274 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~-~~~~~~-~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~i~iSA 274 (607)
+..+|++++|+|++++ .+..+. .+.+.+.+.. .++|+++|+||+|+...... ......+... ...+++++||
T Consensus 76 ~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 76 IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL--FELLKELLKELWGKPVFPISA 153 (170)
T ss_pred HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh--HHHHHHHHhhCCCCCEEEEec
Confidence 6789999999999987 444432 2444444332 36899999999998764332 2222222222 1236899999
Q ss_pred CCCCChHHHHHHhccc
Q 007334 275 ETGLGMTELYEALRPS 290 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~ 290 (607)
++|.|++++++.|.+.
T Consensus 154 ~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999998754
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=178.78 Aligned_cols=157 Identities=19% Similarity=0.227 Sum_probs=112.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|+...+. ...+. ++.+.........+. .+.+|||||.. ++......
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDP--TIEDSYRKQVVVDGQPCMLEVLDTAGQE----------EYTALRDQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCC--chHhhEEEEEEECCEEEEEEEEECCCch----------hhHHHHHH
Confidence 4899999999999999999976653 22232 333333333444444 58899999987 45556667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
++..+|++|+|+|+++..+..+. .+...+... ..+.|+++|+||+|+...+..............+. +++++||
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SA 145 (190)
T cd04144 67 WIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEASA 145 (190)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEecC
Confidence 89999999999999987666652 233434332 24689999999999976544444444444455565 6899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.+.+.+..
T Consensus 146 k~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 146 KTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876654
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-20 Score=177.99 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=116.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+|+++|.+|||||||+++|++....... .+ +...+.....+.+. ...+.+|||||++ ++...+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~-~~--t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY-KA--TIGVDFALKVIEWDPNTVVRLQLWDIAGQE----------RFGGMT 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC-CC--ceeEEEEEEEEEECCCCEEEEEEEECCCch----------hhhhhH
Confidence 37999999999999999999987542111 12 13344444445544 4578999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
..++..+|++++|+|++++.+..... +...+... ..+.|+++|+||+|+...+....+.....+...++..+++
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE
Confidence 77899999999999999877766532 22333221 2468999999999997544444455555556666557899
Q ss_pred eecCCCCChHHHHHHhccchHH
Q 007334 272 ISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+||++|.|+++++++|.+.+..
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=173.23 Aligned_cols=157 Identities=19% Similarity=0.253 Sum_probs=114.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|++||.+|||||||+|++++.+........ .+.+.....+...+ ..+.+|||||.. ++....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---IGVEFGARMITIDGKQIKLQIWDTAGQE----------SFRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc---cceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 468999999999999999999987653332211 23333333334443 579999999976 556667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..+++.+|++++|+|++++.+..+ +..|+... .++.|+++|+||+|+........+.....+...+. .++++|
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S 147 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNH--LTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETS 147 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEe
Confidence 788899999999999997665554 44555432 35789999999999986544444444444555565 789999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|+|++++++.+.+.+.
T Consensus 148 a~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 148 AKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998876553
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=176.94 Aligned_cols=155 Identities=21% Similarity=0.263 Sum_probs=105.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeee--------cc------CCCCceeeeeEEEEe-----eeCCeeEEEecCCCCcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALV--------YN------TPDDHVTRDIREGLA-----KLGDLRFKVLDSAGLET 182 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v--------~~------~~~~~~T~~~~~~~~-----~~~~~~~~liDTpG~~~ 182 (607)
+|++||.+|||||||+++|++....+. .+ ..+ +|........ ...+..+.+|||||+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g--~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~- 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERG--ITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV- 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCC--CeEecceEEEEEecCCCCcEEEEEEECCCCh-
Confidence 699999999999999999997532111 01 112 3333222222 2245678999999998
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL 262 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~ 262 (607)
++...+..++..+|++|+|+|++++.+..+......+... ++|+++|+||+|+...... ........
T Consensus 79 ---------~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~--~~~~~~~~ 145 (179)
T cd01890 79 ---------DFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALEN--NLEIIPVINKIDLPSADPE--RVKQQIED 145 (179)
T ss_pred ---------hhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHc--CCCEEEEEECCCCCcCCHH--HHHHHHHH
Confidence 4555667788999999999999988776665433333333 7899999999998643211 11112222
Q ss_pred hcCC--CCcEEeecCCCCChHHHHHHhccchH
Q 007334 263 MLGF--GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 263 ~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.+++ .+++++||++|.|+++|++.|.+.++
T Consensus 146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 3343 25799999999999999999987653
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-20 Score=171.71 Aligned_cols=154 Identities=20% Similarity=0.227 Sum_probs=108.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..+. ..... ++.+.......+++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDP--TIEDSYRKQVVIDGETCLLDILDTAGQE----------EYSAMRD 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCC--cchheEEEEEEECCEEEEEEEEECCCCc----------chHHHHH
Confidence 47999999999999999999987642 22222 33343344444454 457889999987 4555666
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|+++..+..+.. +...+.+. ..+.|+++|+||+|+... ..............+. +++++||+
T Consensus 68 ~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~ 145 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-TVSSRQGQDLAKSYGI-PYIETSAK 145 (162)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-eecHHHHHHHHHHhCC-eEEEecCC
Confidence 7889999999999999866555422 33333332 247899999999998763 2223333334444555 78999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++++.|.+.
T Consensus 146 ~~~gi~~l~~~l~~~ 160 (162)
T cd04138 146 TRQGVEEAFYTLVRE 160 (162)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998754
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=196.93 Aligned_cols=146 Identities=27% Similarity=0.362 Sum_probs=111.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.++|+++|+||||||||+|+|++.+ ..+.+.+|+|+|+....+.+ ++..+.||||||+.+..+....+. ...+...
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~--f~~tle~ 265 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAA--FRATLEE 265 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHH--HHHHHHH
Confidence 4799999999999999999999876 77889999999999888888 578999999999854322211222 2445667
Q ss_pred HhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+..||++|+|+|++++. .. ..++|+++|+||+|+.+... + . .... ...+
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-------v----~-~~~~-----~~~~ 328 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-------I----E-RLEE-----GYPE 328 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-------H----H-HHHh-----CCCC
Confidence 88999999999998751 11 12789999999999975311 1 0 0100 1246
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|.|++++++.|.+
T Consensus 329 ~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 329 AVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred EEEEEccCCCCHHHHHHHHHh
Confidence 899999999999999988765
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-20 Score=172.52 Aligned_cols=155 Identities=18% Similarity=0.256 Sum_probs=113.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++++.++. ...+. ++..+.....+..++ .++.+|||||+. ++.....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPH-TIGVEFGTRIIEVNGQKIKLQIWDTAGQE----------RFRAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCc-ccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHHH
Confidence 58999999999999999999987642 22222 122233223334444 478999999987 5666667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHh---h-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~---~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.+++.+|++++|+|++++.+... +..|+.. . .++.|+++|+||+|+........+.....+...+. +++++||
T Consensus 70 ~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 146 (166)
T cd04122 70 SYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECSA 146 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-EEEEEEC
Confidence 78999999999999998766554 3345443 2 34689999999999987655544555555555565 7899999
Q ss_pred CCCCChHHHHHHhccch
Q 007334 275 ETGLGMTELYEALRPSV 291 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l 291 (607)
++|.|+++++..+...+
T Consensus 147 ~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 147 KTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999887654
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-20 Score=175.33 Aligned_cols=159 Identities=20% Similarity=0.202 Sum_probs=113.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee------------CCeeEEEecCCCCccccCch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------GDLRFKVLDSAGLETEATSG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~------------~~~~~~liDTpG~~~~~~~~ 187 (607)
..+|+++|.+|||||||++++++..+... ..+ +++.+.....+.+ ....+.+|||||++
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------ 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPK-FIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------ 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcc-CCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH------
Confidence 46899999999999999999998654211 111 1223333222222 23678999999987
Q ss_pred hHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
++...+..+++.+|++++|+|++++.+..+. .+...+... .++.|+++|+||+|+...+....+.....+...
T Consensus 75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~ 150 (180)
T cd04127 75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY 150 (180)
T ss_pred ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc
Confidence 5666677889999999999999986665552 233333332 246799999999999865544444455555566
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+. +++++||++|.|++++++.|.+.+.
T Consensus 151 ~~-~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 151 GI-PYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred CC-eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 66 7899999999999999999986553
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=173.03 Aligned_cols=156 Identities=17% Similarity=0.215 Sum_probs=111.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+++++.... +...+. ++.+.....+..++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDP--TIEDSYRKQVEVDGQQCMLEILDTAGTE----------QFTAMRD 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCC--cchheEEEEEEECCEEEEEEEEECCCcc----------cchhHHH
Confidence 4799999999999999999996543 233332 44444444455554 456799999987 4555666
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|.++..+..+. .+...+... ..+.|+++|+||+|+..................+. +++++||+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETSAK 146 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC-EEEEeeCC
Confidence 788999999999999877665542 233333221 35789999999999976544333333333344554 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|+++++++|.+.+
T Consensus 147 ~~~~v~~~~~~l~~~l 162 (164)
T cd04175 147 AKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999987654
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=172.68 Aligned_cols=158 Identities=19% Similarity=0.277 Sum_probs=112.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|++++.++.... .+. .+.+.....+...+ ..+.+|||||+. .+....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~-~~t--~~~~~~~~~~~~~~~~~~l~l~D~~g~~----------~~~~~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSF-IST--IGIDFKIRTIELDGKKIKLQIWDTAGQE----------RFRTIT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCccc-ccC--ccceEEEEEEEECCEEEEEEEEeCCchH----------HHHHHH
Confidence 468999999999999999999987642211 221 23333334444444 578999999987 444555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..+++.||++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+........+.....+...+. +++++||+
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETSAK 148 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 6788999999999999887665542 222223332 24689999999999986544444444444555566 68999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 149 ~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 149 ANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-20 Score=176.62 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=112.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+.. ...+. +++.+.....+.+++ ..+.||||||+. ++...+..
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 69 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIA-TVGIDFRNKVVTVDGVKVKLQIWDTAGQE----------RFRSVTHA 69 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-cCcCC-cccceeEEEEEEECCEEEEEEEEeCCCcH----------HHHHhhHH
Confidence 69999999999999999999876421 11221 133333333334443 578999999986 55555677
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|+++..+..+. .+...+.+.. .+.|+++|+||+|+...+.....+........+. +++++||++|
T Consensus 70 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~Sa~~~ 148 (191)
T cd04112 70 YYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETSAKTG 148 (191)
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 88999999999999987665542 2334444432 3689999999999976444333344444445555 7899999999
Q ss_pred CChHHHHHHhccchHH
Q 007334 278 LGMTELYEALRPSVED 293 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~ 293 (607)
.|++++++.|.+.+.+
T Consensus 149 ~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 149 LNVELAFTAVAKELKH 164 (191)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887754
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-20 Score=179.79 Aligned_cols=159 Identities=16% Similarity=0.163 Sum_probs=106.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.+.. ....|+++.+.....+.+++. .+.||||||+.+.....+.+.. .....+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~-~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~--~~~~~~ 77 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP-EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWM--DPRFRG 77 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC-cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHH--HHHHhh
Confidence 47999999999999999999976532 233455554554445667774 5679999997654211111211 123456
Q ss_pred HhhccEEEEEeccchhh-----------HH------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------AV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
+..||++|+|+|++++. .. ..++|+++|+||+|+...+.... + +.........
T Consensus 78 ~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~--~--------~~~~~~~~~~ 147 (198)
T cd04142 78 LRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPR--H--------VLSVLVRKSW 147 (198)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccH--H--------HHHHHHHHhc
Confidence 78999999999998760 11 24689999999999965421110 0 1111111224
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
+++++++||++|.|++++|+.+++.+..+.+
T Consensus 148 ~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 148 KCGYLECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 6799999999999999999999876654443
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.5e-20 Score=189.89 Aligned_cols=168 Identities=27% Similarity=0.327 Sum_probs=120.5
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-eeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-LRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
+..+.++.|+|||+||||||||+|+|++.+. .+.++|+ +|++...+.+.+.+ .++.+|||||+........ ..
T Consensus 152 lelk~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~f--TT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~---gL 225 (329)
T TIGR02729 152 LELKLLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPF--TTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGA---GL 225 (329)
T ss_pred EEeeccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCC--CccCCEEEEEEeCCceEEEEEeCCCcccCCcccc---cH
Confidence 3445578999999999999999999998764 3677777 89999999888876 8999999999975432211 12
Q ss_pred HHHHHHHhhccCEEEEEEecCCC---CCHhHH-HHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHH-HhcC
Q 007334 194 AGMTANVLAKTQFAIFMIDVRSG---LHPLDL-EVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAES-LMLG 265 (607)
Q Consensus 194 ~~~~~~~~~~ad~vl~VvD~s~~---~~~~~~-~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-~~~~ 265 (607)
....+..++.+|++++|+|+++. ....+. .+.+.|... ..++|+++|+||+|+..... .......+ ...+
T Consensus 226 g~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~--~~~~~~~l~~~~~ 303 (329)
T TIGR02729 226 GHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE--LAELLKELKKALG 303 (329)
T ss_pred HHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH--HHHHHHHHHHHcC
Confidence 23345567889999999999875 222332 233444432 13689999999999976422 22222222 2334
Q ss_pred CCCcEEeecCCCCChHHHHHHhccch
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
. +++++||++++|+++|++.|.+.+
T Consensus 304 ~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 304 K-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 4 789999999999999999987654
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=199.73 Aligned_cols=162 Identities=22% Similarity=0.258 Sum_probs=121.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
..|+|||.||||||||+|+|++.. ..++++|+||+++..+.+.+.+.++.||||||+.+.... . ..+ ....++++.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~-g-~gL-g~~fLrhie 235 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE-G-KGL-GLDFLRHIE 235 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccch-h-hHH-HHHHHHHHH
Confidence 579999999999999999999874 567899999999999999999999999999998754211 0 111 234567888
Q ss_pred hccEEEEEeccch------h---------hH--------------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 405 RAHVVALVLDAEE------V---------RA--------------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 405 ~ad~~llViD~~~------~---------~~--------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
+||++|+|+|++. + .. ...++|+|||+||+|+.+... ..+.+. .
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e---l~e~l~----~ 308 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE---LAEFVR----P 308 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---HHHHHH----H
Confidence 9999999999963 1 00 123689999999999975421 111111 1
Q ss_pred HHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHH
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSR 502 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~ 502 (607)
.+.. .+.++++|||+++.|+++|+.++.+.+..+....++..
T Consensus 309 ~l~~-----~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~~~~ 350 (500)
T PRK12296 309 ELEA-----RGWPVFEVSAASREGLRELSFALAELVEEARAAEPEAE 350 (500)
T ss_pred HHHH-----cCCeEEEEECCCCCCHHHHHHHHHHHHHhhhcccCccc
Confidence 2211 15689999999999999999999998887765554433
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=201.41 Aligned_cols=150 Identities=35% Similarity=0.494 Sum_probs=121.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+++|+++|.||||||||+|+|++.+...+++.+|+|+|.....+.+++..+.+|||||+.+.. ...+.+...++..+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHHHHHHHHHHH
Confidence 3589999999999999999999998877899999999999999999999999999999986431 22333444567778
Q ss_pred HhhccEEEEEeccchh------hHH--hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 403 LMRAHVVALVLDAEEV------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 403 i~~ad~~llViD~~~~------~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
+..||++++|+|++++ ... ..++|+++|+||+|+.+.... . .....+++++||
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~-----------~--------~~~~~~~i~iSA 352 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDL-----------E--------EENGKPVIRISA 352 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchh-----------h--------hccCCceEEEEe
Confidence 8999999999999875 111 257899999999999754211 0 112458999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~ 493 (607)
++|.|++++++.+.+.+..
T Consensus 353 ktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 353 KTGEGIDELREAIKELAFG 371 (449)
T ss_pred eCCCCHHHHHHHHHHHHhh
Confidence 9999999999999887654
|
|
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-20 Score=195.83 Aligned_cols=171 Identities=22% Similarity=0.255 Sum_probs=122.1
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
+..+.+..|+|||+||||||||+|+|++.+.. ++++|+ +|++...+.+.+.+..|.+|||||+........ ...
T Consensus 154 leLk~~adV~LVG~PNAGKSTLln~Ls~akpk-Iadypf--TTl~P~lGvv~~~~~~f~laDtPGliegas~g~---gLg 227 (500)
T PRK12296 154 LELKSVADVGLVGFPSAGKSSLISALSAAKPK-IADYPF--TTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK---GLG 227 (500)
T ss_pred EEecccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCc--ccccceEEEEEECCeEEEEEECCCCccccchhh---HHH
Confidence 34455789999999999999999999987654 577888 999999999999999999999999974332211 112
Q ss_pred HHHHHHhhccCEEEEEEecCCCC----CHhHHH-HHHHHHhh------------CCCCcEEEEecCCCcccCCcCcHHHH
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGL----HPLDLE-VGKWLRKH------------APQIKPIVAMNKCESLHNGTGSLAGA 257 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~----~~~~~~-~~~~l~~~------------~~~~p~ilV~NK~D~~~~~~~~~~~~ 257 (607)
...+.+++.+|++|||+|+++.. ...+.+ +.+.|... ..++|+|+|+||+|+...... .+..
T Consensus 228 ~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l 306 (500)
T PRK12296 228 LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFV 306 (500)
T ss_pred HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHH
Confidence 23456788999999999997521 222211 22222211 136899999999998753221 1111
Q ss_pred HHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 258 AAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 258 ~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+...++ +++++||++++|+++|+++|.+.+..
T Consensus 307 ~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 307 RPELEARGW-PVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 223334455 78999999999999999999887754
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-20 Score=198.18 Aligned_cols=169 Identities=23% Similarity=0.370 Sum_probs=130.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHH-HHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDR-TAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~ 198 (607)
..+|+++|++|||||||+|+|++.+...+++.++ +|++.....+..++..+.+|||||+............ ....+.
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAG--TTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCC--ceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 4689999999999999999999988777888888 9999988888888889999999999744332211112 223456
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHH----HHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE----SLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~----~~~~~~~~~i~iSA 274 (607)
.++..||++++|+|++++.+..+..+...+.+. ++|+++|+||+|+.... ......... +...+..+++++||
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILEA--GKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc--CCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 788999999999999999999988777777665 78999999999998321 111111111 12223347899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.+.+.+..
T Consensus 327 ~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876644
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=179.24 Aligned_cols=152 Identities=28% Similarity=0.336 Sum_probs=110.5
Q ss_pred HHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHH-----HhcC--
Q 007334 193 TAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES-----LMLG-- 265 (607)
Q Consensus 193 ~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-----~~~~-- 265 (607)
+...+..+++.+|++++|+|++++....+..+ +. ...++|+++|+||+|+...... ........ ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~--~~~~~~~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~ 98 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RL--FGGNNPVILVGNKIDLLPKDKN-LVRIKNWLRAKAAAGLGLK 98 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhH--HH--hcCCCcEEEEEEchhcCCCCCC-HHHHHHHHHHHHHhhcCCC
Confidence 35666778899999999999998654444333 11 1236899999999999754321 11111111 1222
Q ss_pred CCCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhh
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~ 345 (607)
..+++++||++|+|+++|++.|.+.++. ...++++|.||||||||+|+|+
T Consensus 99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~------------------------------~~~~~~~G~~nvGKStliN~l~ 148 (190)
T cd01855 99 PKDVILISAKKGWGVEELINAIKKLAKK------------------------------GGDVYVVGATNVGKSTLINALL 148 (190)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhhc------------------------------CCcEEEEcCCCCCHHHHHHHHH
Confidence 2367999999999999999998766531 2479999999999999999999
Q ss_pred cCC--------ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 346 QED--------RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 346 ~~~--------~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
+.. ...++..||||++.....+. ..+.|+||||+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 149 KKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred HhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 753 24678899999998766552 25799999995
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=175.11 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=115.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||++++++..+.. ...+ +.+.+.....+...+ ..+.||||||+. .+....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~ 72 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYIT--TIGVDFKIRTVEINGERVKLQIWDTAGQE----------RFRTIT 72 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCc--cccceeEEEEEEECCEEEEEEEEeCCCch----------hHHHHH
Confidence 5789999999999999999999876421 1112 133344444444444 478999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..+|++++|+|++++.+..+. .+...+.......|+++|+||+|+..................+. +++++||++
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 151 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEECCC
Confidence 7788999999999999987665542 23344444455789999999999986544433444444445554 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|+++++++|...+..
T Consensus 152 ~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 152 NINVEEMFNCITELVLR 168 (199)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999886644
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-20 Score=179.14 Aligned_cols=147 Identities=23% Similarity=0.283 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+.|+++|.+|||||||++++.... +.....+.++.+.....+.+++ ..+.||||||..++ .. ....+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~---------~~-l~~~y 69 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF---------NS-ITSAY 69 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh---------HH-HHHHH
Confidence 368999999999999999999653 3222334445566666677777 46679999995433 21 23467
Q ss_pred HhhccEEEEEeccchhh----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC-CCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP-QVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 467 (607)
+++||++|+|+|+++.. . ...+.|+++|+||+|+.+..... .+..+.++ ...+.
T Consensus 70 ~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~-----------~~~~~~~a~~~~~~ 138 (202)
T cd04120 70 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIS-----------RQQGEKFAQQITGM 138 (202)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC-----------HHHHHHHHHhcCCC
Confidence 88999999999999861 1 12468999999999997542211 11111111 12256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.||+++|+++.+.+..
T Consensus 139 ~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 139 RFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999887643
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=170.31 Aligned_cols=166 Identities=23% Similarity=0.393 Sum_probs=120.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHH-HHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT-AGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~~ 198 (607)
.++|+++|.+|+|||||+|+|++.......+.++ +|++........++..+.+|||||+............+ .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAG--TTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCC--CccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 3689999999999999999999987666666676 78887777777788889999999997442211111111 12334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hc---CCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-ML---GFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~---~~~~~i~iSA 274 (607)
..+..+|++++|+|++++.+.....+...+... +.|+++|+||+|+................ .+ +..+++++||
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE--GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc--CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 567899999999999998887776666655544 68999999999998653211221111221 12 2347899999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|++++++.+..
T Consensus 158 ~~~~~i~~~~~~l~~ 172 (174)
T cd01895 158 LTGQGVDKLFDAIDE 172 (174)
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-20 Score=193.18 Aligned_cols=169 Identities=25% Similarity=0.290 Sum_probs=121.0
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-eeEEEecCCCCccccCchhHHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-LRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
.+.+..|+|||+||||||||+|+|++.+. .+++.|+ ||+....+.+...+ ..+.++||||+.........+ ..
T Consensus 156 lk~iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~--TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~L---g~ 229 (390)
T PRK12298 156 LKLLADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPF--TTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGL---GI 229 (390)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCC--CccCcEEEEEEeCCCcEEEEEeCCCccccccchhhH---HH
Confidence 34467899999999999999999998764 6788888 99999999988765 569999999998543221111 12
Q ss_pred HHHHHhhccCEEEEEEecCC---CCCHhH-HHHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHH-HhcCCC
Q 007334 196 MTANVLAKTQFAIFMIDVRS---GLHPLD-LEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAES-LMLGFG 267 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~---~~~~~~-~~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-~~~~~~ 267 (607)
..+.+++.+|++++|+|++. .....+ ..+.+.+.... .++|+++|+||+|+..... .......+ ...+..
T Consensus 230 ~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e--l~~~l~~l~~~~~~~ 307 (390)
T PRK12298 230 RFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE--AEERAKAIVEALGWE 307 (390)
T ss_pred HHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH--HHHHHHHHHHHhCCC
Confidence 23457899999999999883 222222 23445554431 3689999999999875322 12222222 233432
Q ss_pred -CcEEeecCCCCChHHHHHHhccchHH
Q 007334 268 -DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 268 -~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++++||+++.|+++|++.|.+.+++
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 67999999999999999999887754
|
|
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=197.59 Aligned_cols=152 Identities=32% Similarity=0.392 Sum_probs=119.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+++|+++|+||||||||+|+|++.+..+++++||||+|.....+.++|..+.+|||||+.+.. ...+.....++..+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHHHHHHHHH
Confidence 4689999999999999999999998878899999999999999999999999999999986542 11233444566788
Q ss_pred HhhccEEEEEeccchhh---------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 403 LMRAHVVALVLDAEEVR---------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 403 i~~ad~~llViD~~~~~---------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
++.||++++|+|++++. ....++|+|+|+||+|+.+. .. +. + ....+.+++++|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~----~~--------~----~~~~~~~~~~vS 342 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SL----EF--------F----VSSKVLNSSNLS 342 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-ch----hh--------h----hhhcCCceEEEE
Confidence 89999999999998751 11247899999999999643 11 11 1 111246889999
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~~~ 494 (607)
|++ .|++++++.+.+.+.+.
T Consensus 343 ak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 343 AKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred Eec-CCHHHHHHHHHHHHHHH
Confidence 998 69999999888766543
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-20 Score=171.71 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=109.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++...... ..... +..+.....+..++ ..+.+|||||++ ++.....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDP--TIEDFYRKEIEVDSSPSVLEILDTAGTE----------QFASMRD 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCC--chhheEEEEEEECCEEEEEEEEECCCcc----------cccchHH
Confidence 47999999999999999999987542 22222 33334444444444 357899999987 3444555
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++.++|++++|+|+++..+..+. .+..++.+. ..++|+++|+||+|+..................+. +++++||+
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETSAK 146 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEecCC
Confidence 678999999999999987665552 244444443 24789999999999876444333333333344454 77999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++++.+.+.
T Consensus 147 ~~~~v~~l~~~l~~~ 161 (163)
T cd04176 147 SKTMVNELFAEIVRQ 161 (163)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-20 Score=198.20 Aligned_cols=168 Identities=24% Similarity=0.379 Sum_probs=131.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHH-HHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT-AGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~~ 198 (607)
..+|+++|++|||||||+|+|++.+...+++.++ +|++.....+...+..+.+|||||+............+ ...+.
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG--TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--ceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 5799999999999999999999988888888888 99999888888889999999999987544332222222 23456
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH----HHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA----AESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~----~~~~~~~~~~~i~iSA 274 (607)
.++..+|++|+|+|++++.+.++..+...+.+. ++|+++|+||+|+..... ..... ..+......+++++||
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~--~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~~SA 326 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLRIAGLALEA--GRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVFISA 326 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEEEeC
Confidence 688999999999999999999998887777765 789999999999974321 11111 1112223447899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.+.+....
T Consensus 327 ~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 327 LTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998876654
|
|
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-20 Score=173.48 Aligned_cols=155 Identities=14% Similarity=0.099 Sum_probs=109.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++....+ ...... +..+.....+..++ ..+.||||+|++ ++.....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~p--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVP--TVFDNYAVTVMIGGEPYTLGLFDTAGQE----------DYDRLRP 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCC--ceeeeeEEEEEECCEEEEEEEEECCCcc----------chhhhhh
Confidence 4799999999999999999998764 222222 33333333344455 578899999998 4444555
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|++++.+..+. .+...++...++.|+|+|+||+|+.... .+..++........
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 688999999999999988777653 2444454445578999999999986531 12222333334445
Q ss_pred CCCCcEEeecCCCCChHHHHHHhcc
Q 007334 265 GFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
+...++++||++|.|++++++.+..
T Consensus 148 ~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 148 KAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHH
Confidence 5346899999999999999998764
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.9e-20 Score=170.85 Aligned_cols=156 Identities=22% Similarity=0.240 Sum_probs=110.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|+|++.+... ...+. ++.+.....+... ...+.+|||||.. .+......
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 68 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPT--IGIDYGVKKVSVRNKEVRVNFFDLSGHP----------EYLEVRNE 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCc--cceeEEEEEEEECCeEEEEEEEECCccH----------HHHHHHHH
Confidence 79999999999999999999876522 12222 3344433344433 4678999999987 45556667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC------CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA------PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~------~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
++..+|++|+|+|++++.+.... .+...+.+.. .+.|+++|+||+|+........+.........+. +++++
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 147 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KYFET 147 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCC-eEEEE
Confidence 88999999999999987655442 2222232221 3689999999999975433334444444555565 78999
Q ss_pred ecCCCCChHHHHHHhccch
Q 007334 273 SAETGLGMTELYEALRPSV 291 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l 291 (607)
||++|.|++++++.|.+.+
T Consensus 148 Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999987644
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=191.02 Aligned_cols=167 Identities=25% Similarity=0.266 Sum_probs=120.6
Q ss_pred cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHH
Q 007334 116 DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 116 ~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
..+.++.|+|||+||||||||+|+|++.+.. +++.|+ +|++...+.+.+. +..+.+|||||+........ ...
T Consensus 154 elk~~adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypf--TTl~PnlG~v~~~~~~~~~laD~PGliega~~~~---gLg 227 (424)
T PRK12297 154 ELKLLADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHF--TTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV---GLG 227 (424)
T ss_pred eecccCcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCc--ceeceEEEEEEEeCCceEEEEECCCCcccccccc---hHH
Confidence 3445679999999999999999999988754 567787 9999999988877 78999999999975332211 122
Q ss_pred HHHHHHhhccCEEEEEEecCCC---CCHhH-HHHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC
Q 007334 195 GMTANVLAKTQFAIFMIDVRSG---LHPLD-LEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG 267 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~---~~~~~-~~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~ 267 (607)
...+..++.+++++||+|+++. ....+ ..+.++|.... .++|+++|+||+|+... ..........++ .
T Consensus 228 ~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~-~ 302 (424)
T PRK12297 228 HQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLG-P 302 (424)
T ss_pred HHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhC-C
Confidence 2335567889999999999764 22223 23455555432 36899999999997432 111222223344 3
Q ss_pred CcEEeecCCCCChHHHHHHhccchHH
Q 007334 268 DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++++||++++|+++|++.|.+.+.+
T Consensus 303 ~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 303 KVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 78999999999999999999876653
|
|
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=168.98 Aligned_cols=155 Identities=21% Similarity=0.303 Sum_probs=113.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|++..... ...+ +.+.+.....+...+ ..+.+|||||.. .+......
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~ 68 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE-QYKS--TIGVDFKTKTIEVDGKRVKLQIWDTAGQE----------RFRSITSS 68 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCC--ceeeEEEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence 79999999999999999999876421 1122 244444444455555 578999999976 45566677
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
++..+|++++|+|++++.+.+. +..|+... .++.|+++|+||+|+........+.........++ +++++||+
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 145 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL-PFFETSAK 145 (164)
T ss_pred HhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC-eEEEEeCC
Confidence 8899999999999998766654 33454432 25789999999999876544343444444555666 68999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.+.
T Consensus 146 ~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 146 TNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987664
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-20 Score=170.54 Aligned_cols=153 Identities=21% Similarity=0.320 Sum_probs=112.7
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
+.....++++|++++|+|++++....+.++..++... ++|+++|+||+|+.+... ...........+. +++++||
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~-~~~~iSa 78 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLEL--GKKLLIVLNKADLVPKEV--LEKWKSIKESEGI-PVVYVSA 78 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhC--CCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCC-cEEEEEc
Confidence 3445667789999999999988776666666666544 689999999999864311 1111111122333 6799999
Q ss_pred CCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecC
Q 007334 275 ETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP 354 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~ 354 (607)
++|.|+++|++.|.+.++. .....+++++|.+|+||||++|+|.+.....+++
T Consensus 79 ~~~~gi~~L~~~l~~~~~~---------------------------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~ 131 (156)
T cd01859 79 KERLGTKILRRTIKELAKI---------------------------DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSP 131 (156)
T ss_pred cccccHHHHHHHHHHHHhh---------------------------cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 9999999999999876642 0124689999999999999999999877778889
Q ss_pred CCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 355 EAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 355 ~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
.+|+|.+.... . .+..+.+|||||+
T Consensus 132 ~~~~t~~~~~~--~-~~~~~~~~DtpGi 156 (156)
T cd01859 132 SPGYTKGEQLV--K-ITSKIYLLDTPGV 156 (156)
T ss_pred CCCeeeeeEEE--E-cCCCEEEEECcCC
Confidence 99988764322 2 2447899999995
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-20 Score=170.57 Aligned_cols=154 Identities=21% Similarity=0.214 Sum_probs=107.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++....... .+. ...+........+ ...+.+|||||++ ++......
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 68 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ-LST--YALTLYKHNAKFEGKTILVDFWDTAGQE----------RFQTMHAS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc-CCc--eeeEEEEEEEEECCEEEEEEEEeCCCch----------hhhhhhHH
Confidence 6999999999999999999987542111 111 1222222222333 4578899999987 55566678
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
++..+|++++|+|++++.+..+. .+...+++..++.|+++|+||+|+.... ...........+. +++++||++|.
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~-~~~~~Sa~~~~ 144 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV---TQKKFNFAEKHNL-PLYYVSAADGT 144 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH---HHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 89999999999999987766552 3444454445578999999999985321 1122222333444 78999999999
Q ss_pred ChHHHHHHhccchH
Q 007334 279 GMTELYEALRPSVE 292 (607)
Q Consensus 279 gi~eL~~~i~~~l~ 292 (607)
|++++++.+.+.+.
T Consensus 145 gv~~l~~~l~~~~~ 158 (161)
T cd04124 145 NVVKLFQDAIKLAV 158 (161)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999886554
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=167.93 Aligned_cols=146 Identities=33% Similarity=0.527 Sum_probs=115.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
++|+++|++|+|||||+|++++.....+.+.+++|.+.....+.+++.++.+|||||+.+... ..+......+...+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETED--EIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcc--hHHHHHHHHHHHHHh
Confidence 589999999999999999999887677889999999988888888888999999999865521 122223345556778
Q ss_pred hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCC
Q 007334 405 RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 476 (607)
Q Consensus 405 ~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~ 476 (607)
.+|++++|+|+++. .....++|+++|+||+|+.+.... .......+++++||++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~------------------~~~~~~~~~~~~Sa~~ 141 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL------------------LSLLAGKPIIAISAKT 141 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc------------------ccccCCCceEEEECCC
Confidence 99999999999964 111457999999999999865321 1123357899999999
Q ss_pred CCCHHHHHHHHHHH
Q 007334 477 GRGRIAVMHQVIDT 490 (607)
Q Consensus 477 g~gv~~l~~~i~~~ 490 (607)
+.|++++++.+...
T Consensus 142 ~~~v~~l~~~l~~~ 155 (157)
T cd04164 142 GEGLDELKEALLEL 155 (157)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-20 Score=172.77 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=107.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|..|||||||+-++.... +.....|.+........+..++ .++.||||||+.+.+ . .+..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~------s----lapM 73 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ-FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH------S----LAPM 73 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc-cccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccc------c----cccc
Confidence 4799999999999999999999653 4333345555556666677766 577799999976652 1 1235
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
|+++|+++|+|||+++.. .. ..++-+.+|+||+||.+.+ .+..+..+.++...+.
T Consensus 74 YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R-----------~V~~~ea~~yAe~~gl 142 (200)
T KOG0092|consen 74 YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR-----------EVEFEEAQAYAESQGL 142 (200)
T ss_pred eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc-----------cccHHHHHHHHHhcCC
Confidence 788999999999999861 11 1234466799999998742 2233334444555688
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.++++|||+|.|++++|..|.+.+.
T Consensus 143 l~~ETSAKTg~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 143 LFFETSAKTGENVNEIFQAIAEKLP 167 (200)
T ss_pred EEEEEecccccCHHHHHHHHHHhcc
Confidence 9999999999999999999987543
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=167.09 Aligned_cols=154 Identities=33% Similarity=0.468 Sum_probs=118.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+++|.+|+|||||+|++++...+.+.+.++ +|.+.......+.+.++.+|||||+...... ........+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~ 77 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAG--TTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKIGIERAREA 77 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCC--CccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHHHHHHHHHH
Confidence 379999999999999999999988776777777 8888887788888889999999998743321 111223445667
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+..+|++++|+|++++.+..+...... ..+.|+++|+||+|+...... .......+++++||++|.|+
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCCH
Confidence 889999999999998877776554333 237899999999999865321 11222237899999999999
Q ss_pred HHHHHHhccc
Q 007334 281 TELYEALRPS 290 (607)
Q Consensus 281 ~eL~~~i~~~ 290 (607)
++++++|.+.
T Consensus 146 ~~l~~~l~~~ 155 (157)
T cd04164 146 DELKEALLEL 155 (157)
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-20 Score=172.19 Aligned_cols=144 Identities=24% Similarity=0.274 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. .+..+++++.+.....+.+++. .+.+|||||+.+.. .....+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 70 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS----------AMREQY 70 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh----------HHHHHH
Confidence 799999999999999999999763 3456666666655555666665 57789999964431 123356
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. ... ..+.|+++|+||+|+........ +.. ..+.+ ..++
T Consensus 71 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 139 (164)
T cd04145 71 MRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSR--EEG-----QELAR----KLKI 139 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecH--HHH-----HHHHH----HcCC
Confidence 7889999999999875 011 13689999999999975432111 111 11111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 140 PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 899999999999999999987653
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-20 Score=173.26 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=108.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.|+++|++|||||||+|+|.+.. ..++..+++|+++..+.+.+++. .+.+|||||+.+..... ..+ ...+.+.+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~-~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG--KGL-GHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc--CCc-hHHHHHHHH
Confidence 58999999999999999999764 46778889999888777777776 99999999986432111 111 123345566
Q ss_pred hccEEEEEeccchh-----------hHH------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 405 RAHVVALVLDAEEV-----------RAV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 405 ~ad~~llViD~~~~-----------~~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.+|++++|+|+++. ... ..++|+++|+||+|+.+.....+... .........
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~-----------~~~~~~~~~ 146 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLK-----------ELLKELWGK 146 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHH-----------HHHhhCCCC
Confidence 79999999999754 011 13689999999999976532211111 111111356
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|+.+.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 89999999999999999988753
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=168.91 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=111.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|++....... .+. .+.+.....+..++ ..+.+|||||+. .+......
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 68 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS-QHT--IGVEFGSKIIRVGGKRVKLQIWDTAGQE----------RFRSVTRS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--eeeeEEEEEEEECCEEEEEEEEECcchH----------HHHHhHHH
Confidence 7999999999999999999987643221 121 33333333333333 578999999987 45556677
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+..+. .+...++.. .++.|+++|+||+|+..................+. +++++||++|
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSALTG 147 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 88999999999999987666552 222222222 35789999999999986554444555555666665 7899999999
Q ss_pred CChHHHHHHhccc
Q 007334 278 LGMTELYEALRPS 290 (607)
Q Consensus 278 ~gi~eL~~~i~~~ 290 (607)
.|++++++++...
T Consensus 148 ~~i~~~~~~~~~~ 160 (161)
T cd04113 148 ENVEEAFLKCARS 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998753
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-20 Score=186.83 Aligned_cols=167 Identities=22% Similarity=0.289 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
+...+....++.||+|++|+|++.+.+..+..+.+.+. ++|+|+|+||+|+.+... .......+...+. +++.
T Consensus 10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~----~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~~~-~vi~ 82 (276)
T TIGR03596 10 KARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG----NKPRLIVLNKADLADPAV--TKQWLKYFEEKGI-KALA 82 (276)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC----CCCEEEEEEccccCCHHH--HHHHHHHHHHcCC-eEEE
Confidence 56677888999999999999999988877766666552 679999999999864311 1111122223343 6799
Q ss_pred eecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCcee
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~ 351 (607)
+||+++.|+++|.+.|.+.+++..... .........++++++|.||||||||+|+|++.....
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~ 145 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKEKNEKL-----------------KAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAK 145 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHHhhhhh-----------------hhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccc
Confidence 999999999999999887765421100 000011235789999999999999999999988788
Q ss_pred ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 352 ~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+++.||+|+...... . +..+.|+||||+...
T Consensus 146 ~~~~~g~T~~~~~~~--~-~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 146 VGNRPGVTKGQQWIK--L-SDGLELLDTPGILWP 176 (276)
T ss_pred cCCCCCeecceEEEE--e-CCCEEEEECCCcccC
Confidence 999999999876433 3 346899999998655
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-20 Score=170.07 Aligned_cols=154 Identities=25% Similarity=0.331 Sum_probs=110.6
Q ss_pred CEEEEEEecCCCCCHhHHHHH-HHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHH
Q 007334 205 QFAIFMIDVRSGLHPLDLEVG-KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTEL 283 (607)
Q Consensus 205 d~vl~VvD~s~~~~~~~~~~~-~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL 283 (607)
|++++|+|++++.+..+..+. ..+... ++|+|+|+||+|+..... .......+.......++++||++|.|+++|
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~--~~p~IiVlNK~Dl~~~~~--~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEK--GKKLILVLNKADLVPKEV--LRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcC--CCCEEEEEechhcCCHHH--HHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 789999999998777765555 344433 789999999999975321 111122233333346799999999999999
Q ss_pred HHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeE
Q 007334 284 YEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSV 363 (607)
Q Consensus 284 ~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~ 363 (607)
.+.|.+.+.+........ .......+++++|.||||||||+|+|++.....+++.+|+|++..
T Consensus 77 ~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~ 139 (155)
T cd01849 77 ESAFTKQTNSNLKSYAKD-----------------GKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ 139 (155)
T ss_pred HHHHHHHhHHHHHHHHhc-----------------cccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE
Confidence 999876654321110000 001234789999999999999999999987778999999999987
Q ss_pred EEEEEEcCeEEEEEecCCC
Q 007334 364 RVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 364 ~~~~~~~~~~~~liDTpG~ 382 (607)
...+ +..+.|+||||+
T Consensus 140 ~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 140 EVKL---DNKIKLLDTPGI 155 (155)
T ss_pred EEEe---cCCEEEEECCCC
Confidence 6543 356899999995
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-20 Score=170.78 Aligned_cols=147 Identities=20% Similarity=0.231 Sum_probs=101.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.|+++|++|||||||+|+|++... ......+++|.+.....+.+. +..+.+|||||+.++ . ..+..+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~---------~-~~~~~~ 71 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF---------I-KNMLAG 71 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH---------H-HHHHhh
Confidence 589999999999999999997532 222335678888776667776 789999999996432 1 223456
Q ss_pred HhhccEEEEEeccchh------h----HHhcC-CcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 403 LMRAHVVALVLDAEEV------R----AVEEG-RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 403 i~~ad~~llViD~~~~------~----~~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
+..||++++|+|+++. . ....+ +|+++|+||+|+.+.... ....+.+.+.+... ...+.++++
T Consensus 72 ~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~ 145 (164)
T cd04171 72 AGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL----ELVEEEIRELLAGT--FLADAPIFP 145 (164)
T ss_pred hhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH----HHHHHHHHHHHHhc--CcCCCcEEE
Confidence 7789999999999862 1 11124 499999999999754211 11111121222111 013579999
Q ss_pred cccCCCCCHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVI 488 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~ 488 (607)
+||++|.|++++++.+.
T Consensus 146 ~Sa~~~~~v~~l~~~l~ 162 (164)
T cd04171 146 VSAVTGEGIEELKEYLD 162 (164)
T ss_pred EeCCCCcCHHHHHHHHh
Confidence 99999999999998765
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-20 Score=170.70 Aligned_cols=145 Identities=29% Similarity=0.392 Sum_probs=107.7
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH--hhc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL--MRA 406 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i--~~a 406 (607)
++|.+|||||||+|++++.. ..+++++|+|++.....+.+++..+.+|||||+.+........ .....++ ..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~----~~~~~~~~~~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE----KVARDFLLGEKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH----HHHHHHhcCCCC
Confidence 57999999999999999875 6778899999999888888989999999999986653111101 1122334 489
Q ss_pred cEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCC
Q 007334 407 HVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 407 d~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
|++++|+|+++. .....++|+++|+||+|+.+........+ .+.+ ..+.+++++||++|.
T Consensus 76 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~--------~~~~----~~~~~~~~iSa~~~~ 143 (158)
T cd01879 76 DLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLD--------KLSE----LLGVPVVPTSARKGE 143 (158)
T ss_pred cEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHH--------HHHH----hhCCCeEEEEccCCC
Confidence 999999999875 22346899999999999976532211111 1111 125689999999999
Q ss_pred CHHHHHHHHHHH
Q 007334 479 GRIAVMHQVIDT 490 (607)
Q Consensus 479 gv~~l~~~i~~~ 490 (607)
|++++++.+.+.
T Consensus 144 ~~~~l~~~l~~~ 155 (158)
T cd01879 144 GIDELKDAIAEL 155 (158)
T ss_pred CHHHHHHHHHHH
Confidence 999999888765
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=171.42 Aligned_cols=163 Identities=23% Similarity=0.279 Sum_probs=118.5
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
+...++...+++||++++|+|++.+....+..+.+.+ .++|+++|+||+|+..... ..... ..+......++.
T Consensus 8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~--~~~~~-~~~~~~~~~vi~ 80 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKK--TKKWL-KYFESKGEKVLF 80 (171)
T ss_pred HHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHH--HHHHH-HHHHhcCCeEEE
Confidence 5677788999999999999999988776655544433 2579999999999964311 11111 222222336799
Q ss_pred eecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCcee
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~ 351 (607)
+||+++.|+++|.+.+.+.++.. ... . ........++++++|.+|||||||+|+|++.....
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~-----~~~------------~-~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~ 142 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDI-----EKL------------K-AKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAK 142 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHH-----hhh------------h-hcccCCCCeEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 99999999999999998766431 000 0 00111234789999999999999999999887778
Q ss_pred ecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 352 ~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
+++.+|+|++.....+. ..+.+|||||+
T Consensus 143 ~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 143 VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 89999999887654442 56899999996
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=169.62 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=110.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|++|||||||+|+|++.+.... ..+. ...+.....+.+ .+..+.+|||||.. ++.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~~~~~v~~~~~~~~~~i~D~~G~~----------~~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSEN-QEST--IGAAFLTQTVNLDDTTVKFEIWDTAGQE----------RYRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCc--cceeEEEEEEEECCEEEEEEEEeCCchH----------HHHHHHH
Confidence 4799999999999999999998875321 1221 121222223333 34678999999986 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+++.+|++++|+|++++.+... ..+...+.... ++.|+++|+||+|+..................+. .++++||++
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAKT 147 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC-EEEEEECCC
Confidence 67889999999999997655444 22334444432 5689999999999885444334444444555565 789999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|.|+++++++|.+.+
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd01860 148 GENVNELFTEIAKKL 162 (163)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988654
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-20 Score=173.01 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=114.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.++||||||+.+++...+. ..... |..+.....+..++ .++.+|||+|++ ++.....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~--~~~~~--Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~----------~~~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIP--TVFDNFSANVSVDGNTVNLGLWDTAGQE----------DYNRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCC--cceeeeEEEEEECCEEEEEEEEECCCCc----------cccccch
Confidence 47999999999999999999987652 22211 22232223333333 678999999998 4555566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC----------cCcHHHHHHHHHhcCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG----------TGSLAGAAAESLMLGF 266 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~----------~~~~~~~~~~~~~~~~ 266 (607)
.+++.||++|+|+|+++..+.++. .+...+++..++.|+++|+||+|+.+.. .+..++....+...+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 789999999999999998888763 2444444445679999999999996542 2344555555666665
Q ss_pred CCcEEeecCCCCChHHHHHHhccch
Q 007334 267 GDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
..++++||++|.|++++|+.+.+.+
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHHH
Confidence 4579999999999999999988644
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-20 Score=175.13 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=112.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||++++.+..+.. .... ++.+.....+..+ ...+.+|||||+. ++....
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~l~ 70 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID--EYDP--TIEDSYRKQCVIDEETCLLDILDTAGQE----------EYSAMR 70 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCC--chhhEEEEEEEECCEEEEEEEEeCCCCc----------cchhhH
Confidence 4689999999999999999999876421 1111 2222222333333 3568899999998 444556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+..................+. +++++||
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~Sa 149 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFLETSA 149 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEEEeeC
Confidence 6788999999999999987765552 233333332 23789999999999876544443333444445555 6899999
Q ss_pred CCCCChHHHHHHhccchHHH
Q 007334 275 ETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~~ 294 (607)
++|.|+++++++|.+.+.+.
T Consensus 150 k~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 150 KQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998777553
|
|
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=177.15 Aligned_cols=158 Identities=24% Similarity=0.219 Sum_probs=111.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||++++++..+.. ..+. +..+. ....+....+.+|||||+. .+......++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~T--ig~~~--~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~ 65 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVST--VGGAF--YLKQWGPYNISIWDTAGRE----------QFHGLGSMYC 65 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCc--cceEE--EEEEeeEEEEEEEeCCCcc----------cchhhHHHHh
Confidence 69999999999999999999877531 1221 22222 2223456789999999997 3444556678
Q ss_pred hccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCccc-------------------CCcCcHHHHHHH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLH-------------------NGTGSLAGAAAE 260 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~-------------------~~~~~~~~~~~~ 260 (607)
..+|++|+|+|+++..+..+.. +..+.+....+.|+|+|+||+|+.. .+.+..++....
T Consensus 66 ~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~ 145 (220)
T cd04126 66 RGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence 9999999999999987776632 2222222234689999999999975 233444455555
Q ss_pred HHhcCC-------------CCcEEeecCCCCChHHHHHHhccchHHHH
Q 007334 261 SLMLGF-------------GDPIAISAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 261 ~~~~~~-------------~~~i~iSA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
+...+. -+++++||++|.||+++|+.+.+.+...+
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 555441 25799999999999999999987765543
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=170.37 Aligned_cols=149 Identities=29% Similarity=0.391 Sum_probs=104.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH-h
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL-M 404 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i-~ 404 (607)
+|+++|++|||||||+|+|++.. ..+++++++|.+.....+.+++.++.||||||+.+... +....+. ..+..++ .
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~-~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL-EERNTIE-MQAITALAH 78 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCCccc-cCCchHH-HHHHHHHHh
Confidence 68999999999999999999875 44667788888887777777888999999999854311 1111110 1111222 2
Q ss_pred hccEEEEEeccchh-------------hHHh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV-------------RAVE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~-------------~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
.+|++|+|+|+++. .... .++|+|+|+||+|+.+.....+ . .+ +......++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~----~-----~~----~~~~~~~~~ 145 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE----I-----EE----EEELEGEEV 145 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH----H-----HH----hhhhccCce
Confidence 36899999999753 0111 2789999999999976422111 0 11 112235689
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++||++|.|++++++++.+.
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 146 LKISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred EEEEecccCCHHHHHHHHHHH
Confidence 999999999999999988764
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=173.98 Aligned_cols=148 Identities=20% Similarity=0.186 Sum_probs=103.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.++||||||+.++.+.. ......+..+.+.....+..++. .+.||||||..+. ..+ ...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~---------~~l-~~~ 74 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGS-TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF---------CTI-FRS 74 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH---------HHH-HHH
Confidence 4899999999999999999999653 22222234455655555666664 6679999996432 212 235
Q ss_pred HHhhccEEEEEeccchh-------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+++.||++|+|+|+++. .....+.|+|||+||+||.+..... .+..+.+++..+.+
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~-----------~~~~~~~a~~~~~~ 143 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA-----------TEQAQAYAERNGMT 143 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC-----------HHHHHHHHHHcCCE
Confidence 67899999999999986 1122578999999999996542211 11111222234678
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++||++|.||+++|+++.+.+..
T Consensus 144 ~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 144 FFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999876543
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=171.73 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=114.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+++++...+. ..... +..+.....+..++ ..+.+|||+|++ ++....
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~p--T~~~~~~~~~~~~~~~~~l~iwDtaG~e----------~~~~~~ 70 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVP--TVFENYTASFEIDTQRIELSLWDTSGSP----------YYDNVR 70 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC--CccCC--ceeeeeEEEEEECCEEEEEEEEECCCch----------hhHhhh
Confidence 468999999999999999999987642 22221 22222222333333 579999999997 555566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+.... .+...+++..++.|+++|+||+|+... +.+..++....+..
T Consensus 71 ~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 150 (182)
T cd04172 71 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ 150 (182)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH
Confidence 6789999999999999998777763 345555555668899999999998641 23455566666667
Q ss_pred cCCCCcEEeecCCCCC-hHHHHHHhcc
Q 007334 264 LGFGDPIAISAETGLG-MTELYEALRP 289 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~g-i~eL~~~i~~ 289 (607)
.+...++++||++|.| ++++|+.+..
T Consensus 151 ~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 151 IGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred cCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 7754789999999998 9999998765
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=165.87 Aligned_cols=164 Identities=24% Similarity=0.351 Sum_probs=119.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|+|||||+|+|++.+.+.....+. +++..........+..+.+|||||+...... ...........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~ 78 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ--TTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK--LGERMVKAAWS 78 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCC--ceeceEEEEEEcCCeEEEEEECCCCCcchHH--HHHHHHHHHHH
Confidence 3579999999999999999999988766665555 6666666666666788999999998743221 11123334456
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcCCCCcEEeecCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLGFGDPIAISAETGL 278 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~i~iSA~~g~ 278 (607)
.+..+|++++|+|++++.+..+..+.+.+... +.|+++|+||+|+...... ......... ..+..+++++|++++.
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~ 155 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS--KTPVILVLNKIDLVKDKED-LLPLLEKLKELGPFAEIFPISALKGE 155 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHh--CCCEEEEEEchhccccHHH-HHHHHHHHHhccCCCceEEEEeccCC
Confidence 78899999999999988666666666777654 6899999999999843221 122222222 2334578999999999
Q ss_pred ChHHHHHHhccc
Q 007334 279 GMTELYEALRPS 290 (607)
Q Consensus 279 gi~eL~~~i~~~ 290 (607)
|++++++.|.+.
T Consensus 156 ~~~~l~~~l~~~ 167 (168)
T cd04163 156 NVDELLEEIVKY 167 (168)
T ss_pred ChHHHHHHHHhh
Confidence 999999998754
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=171.30 Aligned_cols=155 Identities=12% Similarity=0.121 Sum_probs=113.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++.+..+. .+... +..+.....+.+++ ..+.+|||+|++ ++.....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~iwDt~G~~----------~~~~~~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVP--TVFENYTASFEIDEQRIELSLWDTSGSP----------YYDNVRP 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCC--ceEEEEEEEEEECCEEEEEEEEECCCch----------hhhhcch
Confidence 47999999999999999999987642 22221 22222223334443 568999999987 4444556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~~ 264 (607)
.++..||++|+|+|++++.+..+. .+...+++..++.|+++|+||+|+... ..+..++....+...
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 688999999999999998887762 355555555668999999999998641 234455556666667
Q ss_pred CCCCcEEeecCCCCC-hHHHHHHhcc
Q 007334 265 GFGDPIAISAETGLG-MTELYEALRP 289 (607)
Q Consensus 265 ~~~~~i~iSA~~g~g-i~eL~~~i~~ 289 (607)
+...++++||++|+| ++++|+.+..
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHHHH
Confidence 754689999999995 9999998875
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=176.51 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=116.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|++||.+|||||||++++++..+. ..... +..+.....+..+ ...+.||||+|++ ++....
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~p--Ti~~~~~~~i~~~~~~v~l~iwDTaG~e----------~~~~~~ 78 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVP--TVFENYTAGLETEEQRVELSLWDTSGSP----------YYDNVR 78 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCC--ceeeeeEEEEEECCEEEEEEEEeCCCch----------hhHHHH
Confidence 368999999999999999999987542 22211 2112222223333 3579999999987 555666
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..||++++|+|++++.+.... .+...+.+..++.|+|+|+||+|+... +.+..++....+..
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~ 158 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ 158 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH
Confidence 7789999999999999998877652 344555554567899999999998642 33555666667777
Q ss_pred cCCCCcEEeecCCCC-ChHHHHHHhccchH
Q 007334 264 LGFGDPIAISAETGL-GMTELYEALRPSVE 292 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~-gi~eL~~~i~~~l~ 292 (607)
.+...++++||++|+ |++++|+.+...+.
T Consensus 159 ~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 159 LGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred cCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 776557999999998 89999999887654
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=167.29 Aligned_cols=157 Identities=20% Similarity=0.192 Sum_probs=106.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|.+|||||||+++|.........+... ++..+.....+.. ....+.+|||||+. .+.....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 70 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM-TTGCDFVVKEVPVDTDNTVELFIFDSAGQE----------LYSDMVS 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCC-ceEEEEEEEEEEeCCCCEEEEEEEECCCHH----------HHHHHHH
Confidence 79999999999999999998642211222221 0223333233322 34689999999986 4445566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.++..+|++++|+|++++.+..+. .+.+.+.....+.|+++|+||+|+.+................+. +++++||++|
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 149 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKTSALRG 149 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 788999999999999986655432 23333333334689999999999976544333332333344454 6799999999
Q ss_pred CChHHHHHHhccc
Q 007334 278 LGMTELYEALRPS 290 (607)
Q Consensus 278 ~gi~eL~~~i~~~ 290 (607)
.|++++++.|.+.
T Consensus 150 ~gi~~l~~~l~~~ 162 (164)
T cd04101 150 VGYEEPFESLARA 162 (164)
T ss_pred CChHHHHHHHHHH
Confidence 9999999988764
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=193.41 Aligned_cols=160 Identities=26% Similarity=0.333 Sum_probs=122.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+|+|.||||||||+|+|++...+++++.++ +|+|.....+.+++..+.+|||||+.... +.........+.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pg--tTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~~ 277 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG--TTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLGIEKSF 277 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC--cEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHHHHHHH
Confidence 45799999999999999999999988888888888 99999999999999999999999997322 111112234566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
.++..+|++++|+|++++.+..+. +...+.. .++|+++|+||+|+... . .. .....++. +++.+||++ .
T Consensus 278 ~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~-~--~~---~~~~~~~~-~~~~vSak~-~ 346 (442)
T TIGR00450 278 KAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKIN-S--LE---FFVSSKVL-NSSNLSAKQ-L 346 (442)
T ss_pred HHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCc-c--hh---hhhhhcCC-ceEEEEEec-C
Confidence 788999999999999998876654 3333332 37899999999998653 1 11 11223344 578999998 6
Q ss_pred ChHHHHHHhccchHH
Q 007334 279 GMTELYEALRPSVED 293 (607)
Q Consensus 279 gi~eL~~~i~~~l~~ 293 (607)
|++++++.+.+.+.+
T Consensus 347 gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 347 KIKALVDLLTQKINA 361 (442)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998876654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-20 Score=186.56 Aligned_cols=167 Identities=22% Similarity=0.285 Sum_probs=123.0
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
+...+....+..||+||+|+|++.+.+..+..+.+.+. ++|+++|+||+|+.+... .......+...+. +++.
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~-~vi~ 85 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEEQGI-KALA 85 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHHcCC-eEEE
Confidence 45677788999999999999999988877755555442 689999999999864311 1111222223343 6799
Q ss_pred eecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCcee
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~ 351 (607)
+||+++.|+++|.+.|.+.+++...... ........++++++|.||||||||+|+|++...+.
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~~~~~~~~-----------------~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~ 148 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLKEKNERRK-----------------AKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAK 148 (287)
T ss_pred EECCCcccHHHHHHHHHHHHHHHHhhhh-----------------hcccCcCceEEEEECCCCCCHHHHHHHHhcCCccc
Confidence 9999999999999998877754311100 00011235799999999999999999999988889
Q ss_pred ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 352 ~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+++.||+|++.... .. +..+.|+||||+...
T Consensus 149 ~~~~~g~T~~~~~~--~~-~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 149 TGNRPGVTKAQQWI--KL-GKGLELLDTPGILWP 179 (287)
T ss_pred cCCCCCeEEEEEEE--Ee-CCcEEEEECCCcCCC
Confidence 99999999997533 22 456899999999655
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=168.14 Aligned_cols=146 Identities=30% Similarity=0.413 Sum_probs=109.3
Q ss_pred EEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhcc
Q 007334 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 407 (607)
Q Consensus 328 ~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 407 (607)
+++|.+|||||||+|+|++.....+++.+++|++.......+++..+.+|||||+.+... .........+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHhCC
Confidence 578999999999999999887667888999999988888888899999999999865421 001111123445678899
Q ss_pred EEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCC
Q 007334 408 VVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 408 ~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g 477 (607)
++++|+|+.+. .....++|+++|+||+|+.+.... ..... .....+++++||++|
T Consensus 79 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-----------~~~~~----~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 79 VILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE-----------AAEFY----SLGFGEPIPISAEHG 143 (157)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH-----------HHHHH----hcCCCCeEEEecccC
Confidence 99999999764 122347999999999999764211 01111 111237899999999
Q ss_pred CCHHHHHHHHHHH
Q 007334 478 RGRIAVMHQVIDT 490 (607)
Q Consensus 478 ~gv~~l~~~i~~~ 490 (607)
.|++++++.+.+.
T Consensus 144 ~gv~~l~~~l~~~ 156 (157)
T cd01894 144 RGIGDLLDAILEL 156 (157)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=176.12 Aligned_cols=159 Identities=22% Similarity=0.235 Sum_probs=114.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+++|++....... +. ++.+.....+.+++ ..+.||||||+. ++...+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 79 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLA--PT--IGVDFKIKQLTVGGKRLKLTIWDTAGQE----------RFRTLT 79 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CC--ceeEEEEEEEEECCEEEEEEEEECCCch----------hhHHHH
Confidence 468999999999999999999987653222 21 33333333344443 578999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..+++.+|++|+|+|+++..+..+.. +...+... ..+.|+++|+||+|+..................+. .++++|
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~S 158 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGC-LFLECS 158 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-EEEEEe
Confidence 77889999999999999876666532 22333322 23579999999999976554444444444455555 679999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|++++++.|...+.+
T Consensus 159 Ak~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 159 AKTRENVEQCFEELALKIME 178 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999977654
|
|
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=166.57 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=111.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+. . ....+...+.....+...+ ..+.+|||+|.. ++......
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~--~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~ 68 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH--S-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE----------RYQTITKQ 68 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC--C-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------hHHhhHHH
Confidence 6999999999999999999987652 1 1121244444444455555 568899999987 45556667
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHH---hhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLR---KHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~---~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
++..+|++++|+|+++..+.++ +.+|+. ... .+.|+++|+||+|+...+....++....+...+. +++++||+
T Consensus 69 ~~~~~~~~i~v~d~~~~~sf~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~ 145 (161)
T cd04117 69 YYRRAQGIFLVYDISSERSYQH--IMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGM-DFFETSAC 145 (161)
T ss_pred HhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 8899999999999998766655 334443 332 3689999999999976655444444444555565 68999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++|++|.+.
T Consensus 146 ~~~~v~~~f~~l~~~ 160 (161)
T cd04117 146 TNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998753
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=170.47 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=108.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+.++++..+. ..... +..+.....+..++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGQE----------DYDRLRP 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCC--cceeeeEEEEEECCEEEEEEEEECCCch----------hhhhhhh
Confidence 37999999999999999999976542 22211 22232222333444 578899999987 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++|+|+|++++.+..+. .+...+....++.|+++|+||+|+.... .....+....+..+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 688999999999999987776663 2444444445578999999999986432 12233333444455
Q ss_pred CCCCcEEeecCCCCChHHHHHHhcc
Q 007334 265 GFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
+...++++||++|+|++++++.+..
T Consensus 148 ~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 148 GAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCcEEEEecccccCCHHHHHHHHHH
Confidence 5336799999999999999998864
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=164.65 Aligned_cols=137 Identities=25% Similarity=0.344 Sum_probs=107.6
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
......+..+|++++|+|++++.+..+..+.+++.....++|+++|+||+|+..... .......+...+. .++++||
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~-~ii~iSa 79 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGI-VVVFFSA 79 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCC-eEEEEEe
Confidence 456778999999999999999988887788888876545789999999999965321 1222333444554 7899999
Q ss_pred CCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecC
Q 007334 275 ETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP 354 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~ 354 (607)
++|.+ +++++|.+|||||||+|+|++.....++.
T Consensus 80 ~~~~~----------------------------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~ 113 (141)
T cd01857 80 LKENA----------------------------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSA 113 (141)
T ss_pred cCCCc----------------------------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCC
Confidence 86643 48999999999999999999988778999
Q ss_pred CCCceeeeEEEEEEEcCeEEEEEecCCCc
Q 007334 355 EAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383 (607)
Q Consensus 355 ~~gtT~~~~~~~~~~~~~~~~liDTpG~~ 383 (607)
.+|+|++..... .++ .+.||||||+.
T Consensus 114 ~~~~~~~~~~~~--~~~-~~~i~DtpG~~ 139 (141)
T cd01857 114 TPGKTKHFQTIF--LTP-TITLCDCPGLV 139 (141)
T ss_pred CCCcccceEEEE--eCC-CEEEEECCCcC
Confidence 999998865433 333 68999999974
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-20 Score=170.34 Aligned_cols=143 Identities=25% Similarity=0.254 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. .+..+++|+.+.....+..++. .+.||||||..+.. .. ...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~-~~~~ 69 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT---------AM-RDLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccc---------hH-HHHH
Confidence 689999999999999999999664 2344555665666566666665 45689999964432 11 2346
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. ... ..++|+++|+||+|+.+...... +.. ..+.+. .+.
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~-----~~~~~~----~~~ 138 (163)
T cd04136 70 IKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR--EEG-----QALARQ----WGC 138 (163)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH--HHH-----HHHHHH----cCC
Confidence 7789999999999875 011 13689999999999975422111 000 111111 246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|+.++|+.+.+.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 139 PFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred eEEEecCCCCCCHHHHHHHHHHh
Confidence 89999999999999999988764
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=170.47 Aligned_cols=160 Identities=24% Similarity=0.289 Sum_probs=111.1
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
.+....++|+|+|.+|||||||+|+|++.. ...++..++ +|.+..+... + ..+.+|||||+............+
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~--~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~ 87 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPG--RTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKW 87 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC--cceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHH
Confidence 444557899999999999999999999875 445555666 7777654433 2 379999999986433322222234
Q ss_pred HHHHHHHhh---ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC--cHHHHHHHHHhcCC-C
Q 007334 194 AGMTANVLA---KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAAESLMLGF-G 267 (607)
Q Consensus 194 ~~~~~~~~~---~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--~~~~~~~~~~~~~~-~ 267 (607)
......++. .+|++++|+|++.+.+..+..+.+++... ++|+++|+||+|+...... ..+.....+...+. .
T Consensus 88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 444444554 45799999999998888887777777765 7899999999999753211 11222223333332 2
Q ss_pred CcEEeecCCCCChH
Q 007334 268 DPIAISAETGLGMT 281 (607)
Q Consensus 268 ~~i~iSA~~g~gi~ 281 (607)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 78999999999984
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.9e-20 Score=170.78 Aligned_cols=144 Identities=23% Similarity=0.246 Sum_probs=101.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++++.. .....+++|+.+.....+..++. .+.||||||..+.. .. ...+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~-~~~~ 69 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG--IFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT---------AM-RDLY 69 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC--CCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccch---------hH-HHHH
Confidence 68999999999999999999954 23445666666666666667665 45689999964331 11 2346
Q ss_pred HhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|.++. .. ...+.|+++|+||+|+.+...... +.. ..+.+. .+.
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~-----~~~~~~----~~~ 138 (164)
T cd04175 70 MKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK--EQG-----QNLARQ----WGC 138 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH--HHH-----HHHHHH----hCC
Confidence 7889999999999764 11 124689999999999976432111 000 111111 246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|.++.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 139 AFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHh
Confidence 899999999999999999987654
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=185.52 Aligned_cols=156 Identities=28% Similarity=0.379 Sum_probs=116.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
-.|+++|+||||||||+|+|+|...+.+++.++||++...+....++.++.+|||||+.+... .........+..++.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALNRAMNKAAWSSLK 83 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHHHHHHHHHHHHHh
Confidence 469999999999999999999998889999999999988777666678999999999865421 112222344566788
Q ss_pred hccEEEEEeccchh---------h-HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 405 RAHVVALVLDAEEV---------R-AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 405 ~ad~~llViD~~~~---------~-~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
.+|++++|+|+++. . ....++|+++|+||+|+..... .. .... ..+.+. ....+++++||
T Consensus 84 ~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~--~l-~~~~----~~l~~~---~~~~~i~~iSA 153 (292)
T PRK00089 84 DVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKE--EL-LPLL----EELSEL---MDFAEIVPISA 153 (292)
T ss_pred cCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHH--HH-HHHH----HHHHhh---CCCCeEEEecC
Confidence 99999999999873 1 1123689999999999974311 11 1111 112211 22468999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~ 492 (607)
++|.|++++++.+.+.+.
T Consensus 154 ~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLP 171 (292)
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999988764
|
|
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=171.64 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=114.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..+.... .+. .+.+.....+..++ ..+.+|||||.. .+...+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~g~~----------~~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST-KST--IGVDFKIKTVYIENKIIKLQIWDTNGQE----------RFRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCc--eeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHhhHH
Confidence 37999999999999999999987653211 121 33444434444444 567899999987 4555667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+..... +...+... ..+.|+++|+||+|+..................++ +++++||++
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~ 146 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQ 146 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 7899999999999999876655422 23333332 23579999999999986554444444444455566 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++++.+.+.+..
T Consensus 147 ~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 147 SINVEEAFILLVKLIIK 163 (188)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887754
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-20 Score=172.34 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=108.9
Q ss_pred EEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
|+|+|.+|||||||++++++..+.. .... +..+.....+..++ ..+.+|||||+. ++......+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVP--TVFENYSADVEVDGKPVELGLWDTAGQE----------DYDRLRPLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCC--cEEeeeeEEEEECCEEEEEEEEECCCCc----------ccchhchhh
Confidence 5899999999999999999876532 1121 23333333444444 468999999987 333444557
Q ss_pred hhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhcCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLMLGF 266 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~~~ 266 (607)
+..+|++|+|+|++++.+.++. .+...+.+..++.|+++|+||+|+..... ....+........+.
T Consensus 67 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 146 (174)
T smart00174 67 YPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGA 146 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCC
Confidence 8899999999999987666553 23444444456899999999999875321 223333344555665
Q ss_pred CCcEEeecCCCCChHHHHHHhccch
Q 007334 267 GDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
..++++||++|.|++++++.+.+.+
T Consensus 147 ~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 147 VKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999987543
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=186.89 Aligned_cols=151 Identities=24% Similarity=0.318 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..|++||.||||||||+|+|++.. ..++++|+||.++..+.+.+++ .++.||||||+.+..... ..+ ....++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~--~gL-g~~flrhi 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG--AGL-GHRFLKHI 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc--ccH-HHHHHHHH
Confidence 479999999999999999999764 5688999999999999888877 899999999987542111 011 23456778
Q ss_pred hhccEEEEEeccchh--------------h--HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAEEV--------------R--AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~~~--------------~--~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++|++|+|+|+++. + .. ..++|+++|+||+|+.+... .+.+. +++.+.
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~----~~~~~----~~l~~~---- 301 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE----LAELL----KELKKA---- 301 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH----HHHHH----HHHHHH----
Confidence 899999999999842 0 11 13689999999999976421 11111 122211
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+.+++++||++++|++++++.+.+.+
T Consensus 302 ~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 246899999999999999999887643
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=170.60 Aligned_cols=158 Identities=12% Similarity=0.049 Sum_probs=111.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|.+|||||||+++|++.... ..... ++.+.....+... ...+.+|||||++ ++.....
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~--t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVP--TVFENYVTNIQGPNGKIIELALWDTAGQE----------EYDRLRP 67 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCC--eeeeeeEEEEEecCCcEEEEEEEECCCch----------hHHHHHH
Confidence 7999999999999999999987642 22221 2222222233332 3578999999987 4555556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCC----cCcHHHHHHHHHhcCCCCcEEe
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNG----TGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~i~i 272 (607)
.++..+|++++|+|++++.+.++.. +...+....++.|+++|+||+|+.... .....+........+..+++++
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 6789999999999999877666532 222233334578999999999987542 1223344444555666578999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.+.+.+..
T Consensus 148 Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999877654
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-20 Score=168.74 Aligned_cols=160 Identities=19% Similarity=0.257 Sum_probs=129.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..++|+++|.++||||-|+-+++...+..-+..+ ...++....+.+++ .+.+||||+|++ ++...
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksT---IGvef~t~t~~vd~k~vkaqIWDTAGQE----------RyrAi 79 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKST---IGVEFATRTVNVDGKTVKAQIWDTAGQE----------RYRAI 79 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccc---eeEEEEeeceeecCcEEEEeeecccchh----------hhccc
Confidence 4688999999999999999999988775433222 34444444445554 578999999999 88888
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+..|++.|.++++|+|++...+++. +.+||+++ .+++++++|+||+||...+.+..++....+...++ .++++
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfen--v~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-~f~Et 156 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-FFLET 156 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHH--HHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCc-eEEEe
Confidence 9999999999999999999888885 55666654 36889999999999999877777777777777777 78999
Q ss_pred ecCCCCChHHHHHHhccchHHH
Q 007334 273 SAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~ 294 (607)
||..+.++++.|+.+...+...
T Consensus 157 SAl~~tNVe~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 157 SALDATNVEKAFERVLTEIYKI 178 (222)
T ss_pred cccccccHHHHHHHHHHHHHHH
Confidence 9999999999998887766543
|
|
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=166.12 Aligned_cols=142 Identities=25% Similarity=0.283 Sum_probs=99.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.+|||||..+. ..+ ...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~l-~~~~ 69 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---------SAM-RDQY 69 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcch---------HHH-HHHH
Confidence 589999999999999999999764 2334555555555555666665 4668999996432 112 2357
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|.++. ... ..++|+++|+||+|+.+.......... +.+ ..+.
T Consensus 70 ~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~--------~~~----~~~~ 137 (162)
T cd04138 70 MRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQD--------LAK----SYGI 137 (162)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHH--------HHH----HhCC
Confidence 7789999999999864 011 247899999999999763211111111 111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|+.+.+.
T Consensus 138 ~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 138 PYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred eEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998764
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=171.71 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=111.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+++++...+. ..... +..+.....+.+++ ..+.+|||+|++ ++.....
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~l~~ 69 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP--KEYIP--TVFDNYSAQTAVDGRTVSLNLWDTAGQE----------EYDRLRT 69 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--cCCCC--ceEeeeEEEEEECCEEEEEEEEECCCch----------hhhhhhh
Confidence 58999999999999999999987642 11111 22222222233333 578999999998 5556667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~ 264 (607)
.++..||++|+|+|++++.+.+... +...+....++.|+++|+||+|+..... ...++....+...
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 7899999999999999987776632 3333444446799999999999965421 2223333344455
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccch
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+...++++||++|+|++++|+.+.+.+
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 544789999999999999999998655
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-19 Score=173.09 Aligned_cols=149 Identities=21% Similarity=0.284 Sum_probs=105.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeecc---------------CCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYN---------------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~---------------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|.+|||||||+|+|++........ ..+ +|.......+...+..+.+|||||+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g--~t~~~~~~~~~~~~~~~~l~DtpG~~--- 76 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERG--ITILAKNTAVTYKDTKINIVDTPGHA--- 76 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcc--cccccceeEEEECCEEEEEEECCCcH---
Confidence 3589999999999999999999732211111 122 55566666677788999999999998
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHHh
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLM 263 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~~ 263 (607)
++...+..++..+|++++|+|++++.......+...+... ++|+++|+||+|+........ .+....+..
T Consensus 77 -------~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 147 (194)
T cd01891 77 -------DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIVVINKIDRPDARPEEVVDEVFDLFIE 147 (194)
T ss_pred -------HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 5666777889999999999999987655554455554443 789999999999975432111 112222212
Q ss_pred -------cCCCCcEEeecCCCCChHHH
Q 007334 264 -------LGFGDPIAISAETGLGMTEL 283 (607)
Q Consensus 264 -------~~~~~~i~iSA~~g~gi~eL 283 (607)
.++ +++++||++|.|+.++
T Consensus 148 ~~~~~~~~~~-~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 148 LGATEEQLDF-PVLYASAKNGWASLNL 173 (194)
T ss_pred hCCccccCcc-CEEEeehhcccccccc
Confidence 234 6799999999887554
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=205.42 Aligned_cols=170 Identities=23% Similarity=0.317 Sum_probs=128.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH--HH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA--GM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~--~~ 196 (607)
..++|+|+|+||||||||+|+|++.+..++++.++ +|++.....+.+++..+.+|||||+.......... +++ ..
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~g--tT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~-e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAG--TTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGA-EYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCC--CCcCcceeEEEECCCEEEEEECCCcccCcccchhH-HHHHHHH
Confidence 35899999999999999999999988777888888 99999888888899999999999986432221111 222 12
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc-HHHHHH-HHHhcCCCCcEEeec
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LAGAAA-ESLMLGFGDPIAISA 274 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-~~~~~~-~~~~~~~~~~i~iSA 274 (607)
+..++..+|++++|+|++++.+.++..+...+.+. ++|+++|+||+|+....... ...... .+....+.+++++||
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~--~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSA 603 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDA--GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSA 603 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEEC
Confidence 45668999999999999999999987777666654 78999999999997532110 011111 111223446799999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|+++|++.+.+.++.
T Consensus 604 ktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 604 KTGWHTNRLAPAMQEALES 622 (712)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887654
|
|
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-19 Score=176.91 Aligned_cols=156 Identities=14% Similarity=0.165 Sum_probs=109.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+. ..... ++.+.....+.+++ ..+.||||+|.. .+......
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~p--Ti~d~~~k~~~i~~~~~~l~I~Dt~G~~----------~~~~~~~~ 67 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTP--TIEDFHRKLYSIRGEVYQLDILDTSGNH----------PFPAMRRL 67 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCC--ChhHhEEEEEEECCEEEEEEEEECCCCh----------hhhHHHHH
Confidence 6999999999999999999977652 22222 44455555555555 568899999987 33344455
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh----------CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH----------APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGD 268 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~----------~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 268 (607)
++..+|++|+|+|+++..+.++. .+.+++... ..+.|+|+|+||+|+...+....++....+.......
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 67899999999999987666552 244444321 2468999999999997644443333333322221126
Q ss_pred cEEeecCCCCChHHHHHHhccch
Q 007334 269 PIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
++++||++|.|++++++.|....
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998644
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=165.99 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=109.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|++|||||||+++++.... +.+..+ ++.+........+ ...+.+|||||+. .+.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEP--TKADSYRKKVVLDGEDVQLNILDTAGQE----------DYAAIRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCC--cchhhEEEEEEECCEEEEEEEEECCChh----------hhhHHHH
Confidence 3799999999999999999997654 223333 4444433333444 3579999999987 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HH-HHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EV-GKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~-~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.... .+ ..+++.. ..++|+++|+||+|+.................++. +++++||+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 145 (164)
T cd04139 67 NYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETSAK 145 (164)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEeeCC
Confidence 788999999999999876554431 22 2333221 24799999999999976333333333344445565 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=169.46 Aligned_cols=145 Identities=25% Similarity=0.286 Sum_probs=100.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|++++.. ....+.+++.+.....+..++. .+.+|||||+.+.. .. ...+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~-~~~~ 68 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGH--FVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS---------AM-RDQY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccch---------HH-HHHH
Confidence 489999999999999999999764 2334445555655555566654 56799999965432 11 2346
Q ss_pred HhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++.. .. ..++|+++|+||+|+.+...... +.. ..+.+ ..+.
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 137 (164)
T smart00173 69 MRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVST--EEG-----KELAR----QWGC 137 (164)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcH--HHH-----HHHHH----HcCC
Confidence 77899999999998750 01 13689999999999976422111 000 11111 1247
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 138 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 138 PFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999987654
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-19 Score=170.67 Aligned_cols=172 Identities=23% Similarity=0.298 Sum_probs=118.9
Q ss_pred ccccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHH
Q 007334 113 TKIDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILD 191 (607)
Q Consensus 113 ~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~ 191 (607)
+..+.+..++|+|+|.+|||||||+|+|++.+ .+.++..++ +|++...... +..+.+|||||+...........
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~--~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~ 91 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPG--RTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKE 91 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC--ceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHH
Confidence 33444567899999999999999999999875 444555565 7776654332 47899999999864322222223
Q ss_pred HHHHHHHHHhhc---cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH--HHHHHHHHhcCC
Q 007334 192 RTAGMTANVLAK---TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL--AGAAAESLMLGF 266 (607)
Q Consensus 192 ~~~~~~~~~~~~---ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~--~~~~~~~~~~~~ 266 (607)
++......++.. ++++++|+|++.+.+..+.++.+++... ++|+++|+||+|+........ ......+... .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~ 168 (196)
T PRK00454 92 KWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY--GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-D 168 (196)
T ss_pred HHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc--CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-C
Confidence 344444445554 4688999999988887776777787765 789999999999976432111 1111122222 2
Q ss_pred CCcEEeecCCCCChHHHHHHhccchH
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
..++++||++|.|++++++.|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 37899999999999999999876653
|
|
| >KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-20 Score=167.77 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=112.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..||+++|..+|||||||+++... .+.....+.+..|.....+.+.|+ +++||||||+.+++ ...-.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd-~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFr----------slips 90 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYD-KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----------SLIPS 90 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHh-hhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHh----------hhhhh
Confidence 379999999999999999999955 455566677888998888888887 55699999976663 22347
Q ss_pred HHhhccEEEEEeccchh-------hH----Hh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------RA----VE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------~~----~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
|++++.++|+|||.++. .. .. .+.-+++|+||.||.++++ +..+.++..+...+
T Consensus 91 Y~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq-----------vs~eEg~~kAkel~ 159 (221)
T KOG0094|consen 91 YIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ-----------VSIEEGERKAKELN 159 (221)
T ss_pred hccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhh-----------hhHHHHHHHHHHhC
Confidence 89999999999999986 11 11 1355789999999998733 22333333344456
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+-++++||+.|.||.++|..|...+.
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhcc
Confidence 78999999999999999998776543
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=169.40 Aligned_cols=146 Identities=23% Similarity=0.270 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. ......++++.+.....+..++. .+.+|||||..+.. .....+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~ 71 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TITSSY 71 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH----------HHHHHH
Confidence 689999999999999999999764 33344555555555555666654 67899999954321 122456
Q ss_pred HhhccEEEEEeccchhh----------H---H-hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------A---V-EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~---~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++.. . . ..+.|+++|+||+|+....... .+.. .... ...+++
T Consensus 72 ~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~--~~~~-----~~~~----~~~~~~ 140 (166)
T cd01869 72 YRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVD--YSEA-----QEFA----DELGIP 140 (166)
T ss_pred hCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCC--HHHH-----HHHH----HHcCCe
Confidence 77899999999998751 0 1 1468999999999987543211 0111 0111 123578
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 141 ~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 141 FLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999987653
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=166.51 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=110.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|++|||||||+|+|++....... .+. .+.+.....+.+.+ ..+.+|||||+. .+......
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 68 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY-KAT--IGADFLTKEVTVDDKLVTLQIWDTAGQE----------RFQSLGVA 68 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc-CCc--cceEEEEEEEEECCEEEEEEEEeCCChH----------HHHhHHHH
Confidence 7999999999999999999987643211 111 33344444444444 457799999986 44455667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHH-HHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKW-LRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~-l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
+++.+|++|+|+|++++.+.... .+.+. +... ..++|+++|+||+|+........+.........+..+++++|
T Consensus 69 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 148 (172)
T cd01862 69 FYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETS 148 (172)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEE
Confidence 88999999999999887654432 12222 2221 126899999999999853333334444445555645789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|++++++.|.+.+.+
T Consensus 149 a~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 149 AKEAINVEQAFETIARKALE 168 (172)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=174.09 Aligned_cols=159 Identities=25% Similarity=0.351 Sum_probs=116.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+|+++|.+|||||||+|+|++........ +. ++.+.....+.+. ...+.+|||||+. .+....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~t--i~~d~~~~~i~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PT--VGVDFFSRLIEIEPGVRIKLQLWDTAGQE----------RFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ce--eceEEEEEEEEECCCCEEEEEEEeCCcch----------hHHHHH
Confidence 589999999999999999999876543322 21 4445544444442 3578999999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHh---h-C-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---H-A-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~---~-~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..++..+|++++|+|++++.+..+ +.+|+.. . . ...|+++|+||+|+..................+. .++++
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~--l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 146 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEH--VHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIET 146 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC-EEEEE
Confidence 778999999999999998766555 3334432 2 1 2467899999999987554444444445555665 78999
Q ss_pred ecCCCCChHHHHHHhccchHHHH
Q 007334 273 SAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
||++|.|++++++.|.+.+.+.+
T Consensus 147 Sak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 147 SARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998776543
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-20 Score=158.45 Aligned_cols=159 Identities=21% Similarity=0.299 Sum_probs=130.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+++.+|+|.|+||||||+-++....+.-. +. .++..|.....+++.| .+++||||+|++ +|..+
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~s--Yi-tTiGvDfkirTv~i~G~~VkLqIwDtAGqE----------rFrti 73 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGS--YI-TTIGVDFKIRTVDINGDRVKLQIWDTAGQE----------RFRTI 73 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccc--eE-EEeeeeEEEEEeecCCcEEEEEEeecccHH----------HHHHH
Confidence 356789999999999999999987644221 11 2245677888888766 578999999999 88889
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
+..+++..+++++|+|++++.++.. +.+||++. .+..|-++|+||.|....+.+..++...++...|+ +.|++|
T Consensus 74 tstyyrgthgv~vVYDVTn~ESF~N--v~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FETS 150 (198)
T KOG0079|consen 74 TSTYYRGTHGVIVVYDVTNGESFNN--VKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFETS 150 (198)
T ss_pred HHHHccCCceEEEEEECcchhhhHh--HHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCc-hheehh
Confidence 9999999999999999999888876 55666654 56788999999999998877777777778888888 899999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|+..++++..|..|.+.+..
T Consensus 151 aKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 151 AKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred hhhcccchHHHHHHHHHHHH
Confidence 99999999999999876543
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=173.89 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=108.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+.... .| +..+.....+..++ ..+.+|||+|++ ++......
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~-~~---t~~~~~~~~i~~~~~~~~l~i~Dt~G~~----------~~~~l~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVY-EP---TVFENYVHDIFVDGLHIELSLWDTAGQE----------EFDRLRSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCcc-CC---cceeeeEEEEEECCEEEEEEEEECCCCh----------hccccccc
Confidence 7999999999999999999987653221 11 11122222233333 579999999987 33334445
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhcC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLMLG 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~~ 265 (607)
++..+|++++|+|+++..+..... +...+....++.|+++|+||+|+..... ...++....+...+
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 788999999999999987776532 4444544456789999999999976432 11222333334444
Q ss_pred CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
...++++||++|.|++++|++|.+.+.
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 336799999999999999999986553
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=173.38 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=118.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+++|++...... ..+. +..+.....+.+++ ..+.||||||+. ++...+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~-~~~t--~g~~~~~~~v~~~~~~~~l~l~Dt~G~~----------~~~~~~ 78 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLE-SKST--IGVEFATRTLQVEGKTVKAQIWDTAGQE----------RYRAIT 78 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCc--eeEEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 56899999999999999999998765321 1222 44455555555554 589999999987 566667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..+++.+|++|+|+|++++.+.+.. .+...+++. ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 79 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~SA~ 157 (216)
T PLN03110 79 SAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL-SFLETSAL 157 (216)
T ss_pred HHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 7889999999999999987666542 233333333 23689999999999876554444444444444555 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|...+...
T Consensus 158 ~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 158 EATNVEKAFQTILLEIYHI 176 (216)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877653
|
|
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=167.37 Aligned_cols=151 Identities=18% Similarity=0.173 Sum_probs=103.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+++|...... ...|. ++.+. ..+...+..+.+|||||+. ++......
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t--~g~~~--~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 72 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPT--VGFNV--ETVTYKNVKFNVWDVGGQD----------KIRPLWRH 72 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCC--cccce--EEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999875542 22222 22222 2344577899999999997 45555677
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC-----CCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG-----FGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~-----~~~~i~ 271 (607)
++..+|++++|+|++++.+..+. .+.+.+... ..+.|+++|+||+|+.... ..++.. ....+. ...+++
T Consensus 73 ~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~-~~~~~~~~~~~~~~~~~ 149 (168)
T cd04149 73 YYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM--KPHEIQ-EKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC--CHHHHH-HHcCCCccCCCcEEEEE
Confidence 89999999999999986555432 222333321 2468999999999986531 122222 221111 114689
Q ss_pred eecCCCCChHHHHHHhcc
Q 007334 272 ISAETGLGMTELYEALRP 289 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~ 289 (607)
+||++|.|+++++++|.+
T Consensus 150 ~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 150 SCATSGDGLYEGLTWLSS 167 (168)
T ss_pred eeCCCCCChHHHHHHHhc
Confidence 999999999999999864
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=170.16 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=108.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||++++++..+. +..... ++..+.....+...+ ..+.+|||+|.. .+....
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~-T~~~~~~~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~ 71 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSP-TIKPRYAVNTVEVYGQEKYLILREVGEDE----------VAILLN 71 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCC-ccCcceEEEEEEECCeEEEEEEEecCCcc----------cccccc
Confidence 578999999999999999999987653 122222 122223223344445 568899999987 333344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++.++|++++|+|++++.+... +..|+... ..+.|+++|+||+|+.+...............++...++++||+
T Consensus 72 ~~~~~~~d~~llv~d~~~~~s~~~--~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFSY--CAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSK 149 (169)
T ss_pred hhhhhcCCEEEEEEeCCCHHHHHH--HHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEec
Confidence 567899999999999988644332 34555443 23689999999999875432211112223345566557999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 150 ~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 150 LGDSSNELFTKLATAA 165 (169)
T ss_pred cCccHHHHHHHHHHHh
Confidence 9999999999987654
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=168.41 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=104.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEee--eCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK--LGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+++++...... .... +...+.....+. .....+.+|||||+. .+.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KYVA-TLGVEVHPLDFHTNRGKIRFNVWDTAGQE----------KFGGLRD 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCC-ceeeEEEEEEEEECCEEEEEEEEECCCCh----------hhccccH
Confidence 379999999999999999998655321 1111 011222222222 234679999999987 2223334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.++..+|++|+|+|++++.+.... .+.+.+.....+.|+++|+||+|+.... .. ..........+. +++++||++|
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-~~-~~~~~~~~~~~~-~~~e~Sa~~~ 144 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK-VK-AKQITFHRKKNL-QYYEISAKSN 144 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc-CC-HHHHHHHHHcCC-EEEEEeCCCC
Confidence 567899999999999987666552 2334444444479999999999997432 22 222222223333 7899999999
Q ss_pred CChHHHHHHhccchH
Q 007334 278 LGMTELYEALRPSVE 292 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~ 292 (607)
.|++++++.|.+.+.
T Consensus 145 ~~v~~~f~~l~~~~~ 159 (166)
T cd00877 145 YNFEKPFLWLARKLL 159 (166)
T ss_pred CChHHHHHHHHHHHH
Confidence 999999999986653
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-20 Score=165.24 Aligned_cols=147 Identities=21% Similarity=0.179 Sum_probs=116.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+|+.++|..+||||+|+-+++.. ++..........+.....+.++++ +++||||+|+..+. .-+..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~k-rF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~fr----------sv~~s 74 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDK-RFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFR----------SVTRS 74 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhcc-CccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHH----------HHHHH
Confidence 479999999999999999999966 444333455667777777788776 56799999965442 34568
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.|.++|||||.+.. +....+.-+++++||+||... +.+.++.++.|+...+.
T Consensus 75 yYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r-----------R~Vs~EEGeaFA~ehgL 143 (216)
T KOG0098|consen 75 YYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR-----------REVSKEEGEAFAREHGL 143 (216)
T ss_pred HhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc-----------ccccHHHHHHHHHHcCc
Confidence 89999999999999976 112367889999999999876 34566777777777899
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.++++||++++|+++.|......+.
T Consensus 144 ifmETSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 144 IFMETSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred eeehhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999987766543
|
|
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=169.25 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=105.2
Q ss_pred EEEEecCCCCchhHHHHHhhcccee---eeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREA---LVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~---~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|++|||||||+|+|++.... ....... .|.....+.+.+.+..+.+|||||+. .+.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKIT--PTVGLNIGTIEVGNARLKFWDLGGQE----------SLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccC--CccccceEEEEECCEEEEEEECCCCh----------hhHHHHH
Confidence 4899999999999999999875321 1111122 45555556677788999999999987 4455566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh----cCC--CCc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGF--GDP 269 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~----~~~--~~~ 269 (607)
.++..+|++++|+|++++.+..+. .+..+++.. ..+.|+++|+||+|+..... .......+.. .+. .++
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS--VEEIKEVFQDKAEEIGRRDCLV 146 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC--HHHHHHHhccccccccCCceEE
Confidence 788999999999999875443331 122222221 24789999999999866422 2222222211 111 257
Q ss_pred EEeecCCCCChHHHHHHhcc
Q 007334 270 IAISAETGLGMTELYEALRP 289 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~ 289 (607)
+++||++|+|+++++++|.+
T Consensus 147 ~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 147 LPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEeeCCCCcCHHHHHHHHhc
Confidence 99999999999999999864
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=202.82 Aligned_cols=156 Identities=25% Similarity=0.300 Sum_probs=117.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|+||||||||+|+|+|.+ ..+++++|+|++...+.+.+++.++.+|||||+.+........+.....+..++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3689999999999999999999875 578999999999999999999999999999999876321111111111122333
Q ss_pred --hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 --MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 --~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
..+|++++|+|+++. +..+.++|+++|+||+|+.+........+.+ .+ ..++|++++|
T Consensus 82 ~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L--------~~----~LG~pVvpiS 149 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDAL--------SA----RLGCPVIPLV 149 (772)
T ss_pred hccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHH--------HH----HhCCCEEEEE
Confidence 379999999999975 3445689999999999987553332222222 11 1267999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~ 492 (607)
|++|.|++++++.+.+...
T Consensus 150 A~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQA 168 (772)
T ss_pred eecCCCHHHHHHHHHHhhh
Confidence 9999999999998887653
|
|
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-19 Score=173.22 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=99.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.+.......++++.+.....+.+++. .+.||||||..+.. .....+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 70 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR----------SVTHAY 70 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH----------HhhHHH
Confidence 489999999999999999999764322223333344444444556554 67799999953321 112356
Q ss_pred HhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++.. . ...++|+++|+||+|+........ +.. ..+.+ ..+.+
T Consensus 71 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~--~~~-----~~l~~----~~~~~ 139 (191)
T cd04112 71 YRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKR--EDG-----ERLAK----EYGVP 139 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCH--HHH-----HHHHH----HcCCe
Confidence 77899999999998751 1 123689999999999975322110 000 11111 12568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|..+.+.+.
T Consensus 140 ~~e~Sa~~~~~v~~l~~~l~~~~~ 163 (191)
T cd04112 140 FMETSAKTGLNVELAFTAVAKELK 163 (191)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987654
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=190.25 Aligned_cols=154 Identities=22% Similarity=0.257 Sum_probs=112.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..|+|||.||||||||+|+|++.. ..++++|+||+.+..+.+.+.+ ..+.++||||+.+..... ..+ ..+..+++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~--~~L-g~~~l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG--AGL-GIRFLKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch--hhH-HHHHHHHH
Confidence 369999999999999999999875 5899999999999999988875 569999999987642110 011 23445788
Q ss_pred hhccEEEEEeccc---h--h---------hHHh-----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAE---E--V---------RAVE-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~---~--~---------~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++|++++|+|++ . . .... .++|+|+|+||+|+...... .+.+ .++.+.+.
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el---~~~l-----~~l~~~~~-- 305 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA---EERA-----KAIVEALG-- 305 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH---HHHH-----HHHHHHhC--
Confidence 9999999999987 1 1 1111 36899999999999754221 1111 11111111
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
...+++++||+++.|++++++.|.+.+.
T Consensus 306 ~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 306 WEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred CCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 1237899999999999999998877654
|
|
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=169.48 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=104.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+++|++.....+. .|.......+.+++..+.+|||||+. .+......
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~------~t~g~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 77 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTIS------PTLGFQIKTLEYEGYKLNIWDVGGQK----------TLRPYWRN 77 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC------CccccceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999987442221 12223334445568899999999987 34445667
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc----CCCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML----GFGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~----~~~~~i~i 272 (607)
++..+|++++|+|++++.+..+ ..+..++.. ...+.|+++|+||+|+..... .++....+... ...+++++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 155 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS--EEEIREALELDKISSHHWRIQPC 155 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC--HHHHHHHhCccccCCCceEEEec
Confidence 8899999999999998754443 123333332 124789999999999875421 22222222111 11268999
Q ss_pred ecCCCCChHHHHHHhcc
Q 007334 273 SAETGLGMTELYEALRP 289 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~ 289 (607)
||++|.|++++++++.+
T Consensus 156 Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 156 SAVTGEGLLQGIDWLVD 172 (173)
T ss_pred cCCCCcCHHHHHHHHhc
Confidence 99999999999998864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=154.58 Aligned_cols=162 Identities=21% Similarity=0.273 Sum_probs=130.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..+++.|+|.+.||||||+-+.++..+..... .++..|.....+.- ...++++|||+|++ ++...
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afv---sTvGidFKvKTvyr~~kRiklQiwDTagqE----------ryrti 86 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFV---STVGIDFKVKTVYRSDKRIKLQIWDTAGQE----------RYRTI 86 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhcccccccee---eeeeeeEEEeEeeecccEEEEEEEecccch----------hhhHH
Confidence 35799999999999999999999876532111 11334444443322 34689999999999 67788
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
|-.+++.|+++|+++|+++..+... +..|.... ..+.|+|+|+||||+..++.+..+.....+..+|+ ++|++
T Consensus 87 TTayyRgamgfiLmyDitNeeSf~s--vqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEt 163 (193)
T KOG0093|consen 87 TTAYYRGAMGFILMYDITNEESFNS--VQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFET 163 (193)
T ss_pred HHHHhhccceEEEEEecCCHHHHHH--HHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhh
Confidence 8999999999999999998666554 44555443 45899999999999999988888888889999999 99999
Q ss_pred ecCCCCChHHHHHHhccchHHHHh
Q 007334 273 SAETGLGMTELYEALRPSVEDYML 296 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~~~~ 296 (607)
||+.+.+++++|+.+...+.+.+.
T Consensus 164 SaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 164 SAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 999999999999999988877654
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=168.63 Aligned_cols=146 Identities=21% Similarity=0.180 Sum_probs=100.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++.. +.....+.++.+.....+.+++. .+.+|||||..+. . .....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~---------~-~~~~~ 71 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF---------R-TITTA 71 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH---------H-HHHHH
Confidence 4799999999999999999999764 33333444444444445556654 6789999995432 1 12235
Q ss_pred HHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.||++++|+|++++. . ...+.|+++|+||+|+.+..... .+... ...+ ..+.
T Consensus 72 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~-----~~~~----~~~~ 140 (167)
T cd01867 72 YYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS--KEEGE-----ALAD----EYGI 140 (167)
T ss_pred HhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHH-----HHHH----HcCC
Confidence 678999999999998761 0 12468999999999998543211 11110 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+++.+.+
T Consensus 141 ~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 141 KFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998765
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=172.89 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=99.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.+|||||||+++|++... ...+++++.+.....+.+++.. +.||||||..+. .. ....++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~-~~~~~~ 68 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY---------TA-LRDQWI 68 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhh---------HH-HHHHHH
Confidence 589999999999999999996532 3345555555544455566654 778999995432 11 223578
Q ss_pred hhccEEEEEeccchh----------h-H--H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 404 MRAHVVALVLDAEEV----------R-A--V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~-~--~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+.+|++|+|+|.++. . . . ..++|+|+|+||+|+.+...... ... .++.+ ..+
T Consensus 69 ~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~--~~~-----~~~~~----~~~ 137 (190)
T cd04144 69 REGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST--EEG-----AALAR----RLG 137 (190)
T ss_pred HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH--HHH-----HHHHH----HhC
Confidence 899999999999875 0 1 1 13689999999999975432111 000 11111 124
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 138 ~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 138 CEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=167.83 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=96.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+++|........ .|+++.+.. .+...+..+.+|||||..+. . .....++
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~~~--~~~~~~~~~~l~Dt~G~~~~---------~-~~~~~~~ 74 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFNVE--TVTYKNVKFNVWDVGGQDKI---------R-PLWRHYY 74 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccceE--EEEECCEEEEEEECCCCHHH---------H-HHHHHHh
Confidence 47999999999999999999986543322 333333322 34457789999999996432 1 1234577
Q ss_pred hhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..||++|+|+|+++. .. ...++|+++|+||+|+.+.... +++.+ .+..........+
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~i~~----~~~~~~~~~~~~~ 146 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKP----HEIQE----KLGLTRIRDRNWY 146 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCH----HHHHH----HcCCCccCCCcEE
Confidence 899999999999985 11 1246899999999998653211 11111 1100000112347
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|.|++++|++|.+
T Consensus 147 ~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 147 VQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEeeCCCCCChHHHHHHHhc
Confidence 899999999999999988753
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=177.73 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=101.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|.+|||||||+++|++.......+. ++.+.....+.+++ ..+.||||||..++. ....
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 80 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPT--IGVDFKIKQLTVGGKRLKLTIWDTAGQERFR----------TLTS 80 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCC--ceeEEEEEEEEECCEEEEEEEEECCCchhhH----------HHHH
Confidence 358999999999999999999998754333333 33333334455554 467899999964431 1234
Q ss_pred HHHhhccEEEEEeccchhh-----------HH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+++.+|++|+|+|+++.. .. ..+.|+++|+||+|+........ +.. ..+. ..
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~--~~~-----~~~~----~~ 149 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR--EEG-----MALA----KE 149 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH--HHH-----HHHH----HH
Confidence 5778999999999998750 01 13578999999999975432211 000 0111 11
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+++++++||++|.|++++|+.+...+..
T Consensus 150 ~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 150 HGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 25689999999999999999999877643
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=165.00 Aligned_cols=153 Identities=27% Similarity=0.363 Sum_probs=109.3
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh--h
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL--A 202 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~--~ 202 (607)
|+|++|||||||+|++++.. ..++..++ +|++.....+.+.+..+.+|||||+........ .......++ .
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~--~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPG--VTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLGE 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCC--cccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcCC
Confidence 58999999999999999875 34555666 888888888888888999999999974332110 011123334 5
Q ss_pred ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 203 KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.+|++++|+|++++.. ...+..++.+. ++|+++|+||+|+......... .......++. +++++||.+|.|+++
T Consensus 74 ~~d~vi~v~d~~~~~~--~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~-~~~~iSa~~~~~~~~ 147 (158)
T cd01879 74 KPDLIVNVVDATNLER--NLYLTLQLLEL--GLPVVVALNMIDEAEKRGIKID-LDKLSELLGV-PVVPTSARKGEGIDE 147 (158)
T ss_pred CCcEEEEEeeCCcchh--HHHHHHHHHHc--CCCEEEEEehhhhcccccchhh-HHHHHHhhCC-CeEEEEccCCCCHHH
Confidence 8999999999987432 22344445444 7899999999999765332221 2223334455 789999999999999
Q ss_pred HHHHhccc
Q 007334 283 LYEALRPS 290 (607)
Q Consensus 283 L~~~i~~~ 290 (607)
+++.+.+.
T Consensus 148 l~~~l~~~ 155 (158)
T cd01879 148 LKDAIAEL 155 (158)
T ss_pred HHHHHHHH
Confidence 99988764
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-20 Score=167.01 Aligned_cols=151 Identities=23% Similarity=0.273 Sum_probs=110.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||.++|.+|||||||+|+++..+ +.......+..|.....+.++++ .++||||||+.++. ... .
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~k-F~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFq---------sLg-~ 76 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKK-FSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQ---------SLG-V 76 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH-HHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhh---------hcc-c
Confidence 46899999999999999999999654 43344555666777777777776 45699999976652 111 2
Q ss_pred HHHhhccEEEEEeccchhhH------------H------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHH-HHhhC
Q 007334 401 KNLMRAHVVALVLDAEEVRA------------V------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE-IQTVI 461 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~~------------~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 461 (607)
..+++||+|++|+|++.+.. . ....|+||++||+|+...... .++.+ ...+.
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r---------~VS~~~Aq~WC 147 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR---------QVSEKKAQTWC 147 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc---------eeeHHHHHHHH
Confidence 46689999999999987610 0 135799999999999764221 12222 23344
Q ss_pred CCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 462 PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 462 ~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
....++|++++|||.+.||++.|+.+.+....
T Consensus 148 ~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 148 KSKGNIPYFETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HhcCCceeEEecccccccHHHHHHHHHHHHHh
Confidence 44567999999999999999999999876543
|
|
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-19 Score=169.93 Aligned_cols=145 Identities=18% Similarity=0.185 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++.+... ...+..|..+.....+.+++. .+.||||||..+.. .....+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~l~~~~ 70 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT----------AMRDQY 70 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH----------HHhHHH
Confidence 6899999999999999999997642 223333444444445566664 57799999964331 123456
Q ss_pred HhhccEEEEEeccchh----------h-H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----------R-A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~-~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++|+|+|+++. . . ...++|+++|+||+|+.+..... .+....++...++
T Consensus 71 ~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~-----------~~~~~~~a~~~~~ 139 (172)
T cd04141 71 MRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVT-----------TEEGRNLAREFNC 139 (172)
T ss_pred hhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccC-----------HHHHHHHHHHhCC
Confidence 7889999999999876 0 1 11468999999999986543211 1111111122357
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.||+++|+.+.+.+.
T Consensus 140 ~~~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 140 PFFETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999987554
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=168.24 Aligned_cols=156 Identities=18% Similarity=0.241 Sum_probs=108.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++++...+ ....+. ++.+.......+++ ..+.+|||||+... ....+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDP--NLESLYSRQVTIDGEQVSLEILDTAGQQQA---------DTEQLER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCC--ChHHhceEEEEECCEEEEEEEEECCCCccc---------ccchHHH
Confidence 489999999999999999987554 223332 33223233333444 46889999999831 1123345
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
++..+|++++|+|++++.+.... .+..++... ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~ 146 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVSAA 146 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC-EEEEeCCC
Confidence 67889999999999988666652 345555553 23789999999999876544444444444555665 78999999
Q ss_pred CC-CChHHHHHHhccch
Q 007334 276 TG-LGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g-~gi~eL~~~i~~~l 291 (607)
+| .|++++|+.+.+.+
T Consensus 147 ~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 147 EDYDGVHSVFHELCREV 163 (165)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 99 49999999987644
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=168.03 Aligned_cols=144 Identities=20% Similarity=0.290 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+++|++.. ......+.++.+.....+..++. .+.+|||||..+. . .....+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~-~~~~~~ 72 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY---------R-AITSAY 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH---------H-HHHHHH
Confidence 689999999999999999999764 33344555555655556666664 5779999995432 1 122356
Q ss_pred HhhccEEEEEeccchh----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++. .. ...++|+++|+||+|+....... .+... .+. ...+++
T Consensus 73 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~--~~~~~-----~~~----~~~~~~ 141 (165)
T cd01868 73 YRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP--TEEAK-----AFA----EKNGLS 141 (165)
T ss_pred HCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC--HHHHH-----HHH----HHcCCE
Confidence 7889999999999875 00 11258999999999997542211 11111 111 113568
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++|+.+...
T Consensus 142 ~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 142 FIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999998764
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-19 Score=163.23 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=108.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|++|||||||+|+|++...... ..+. ++.+.....+...+ ..+.+|||||.. .+......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~ 68 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEK-HEST--TQASFFQKTVNIGGKRIDLAIWDTAGQE----------RYHALGPI 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-cCCc--cceeEEEEEEEECCEEEEEEEEECCchH----------HHHHhhHH
Confidence 799999999999999999998765321 1121 33444444444434 468999999976 44455566
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+.++.. +...+... ..++|+++|+||+|+..................+. ..+++||++|
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 147 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGA-KHFETSAKTG 147 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 788999999999998876655422 22333333 23689999999999986544333333334444555 6799999999
Q ss_pred CChHHHHHHhccc
Q 007334 278 LGMTELYEALRPS 290 (607)
Q Consensus 278 ~gi~eL~~~i~~~ 290 (607)
.|+++++++|.+.
T Consensus 148 ~gi~~~~~~l~~~ 160 (162)
T cd04123 148 KGIEELFLSLAKR 160 (162)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998754
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=159.91 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=126.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|.|||.+|||||||+-+++...+. +....+...|+....+.++| .++.||||+|++ +|...|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd---~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqE----------rFRtLT 77 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFD---DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQE----------RFRTLT 77 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccC---ccCCceeeeeEEEEEEEEcCceEEEEEEeccchH----------hhhccC
Confidence 479999999999999999999987542 22222245666666666655 578999999999 888999
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..|++.|.++|+|+|++...+.... -.|+++. .+++-.++|+||+|...++.+..++....+..++. -++++
T Consensus 78 pSyyRgaqGiIlVYDVT~Rdtf~kL--d~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~-LFiE~ 154 (209)
T KOG0080|consen 78 PSYYRGAQGIILVYDVTSRDTFVKL--DIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRC-LFIEC 154 (209)
T ss_pred HhHhccCceeEEEEEccchhhHHhH--HHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCc-EEEEc
Confidence 9999999999999999988887764 3466554 44666789999999888788888888888888776 77999
Q ss_pred ecCCCCChHHHHHHhccch
Q 007334 273 SAETGLGMTELYEALRPSV 291 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l 291 (607)
||++.+|++..|+.+.+.+
T Consensus 155 SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 155 SAKTRENVQCCFEELVEKI 173 (209)
T ss_pred chhhhccHHHHHHHHHHHH
Confidence 9999999999998887655
|
|
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=167.87 Aligned_cols=144 Identities=21% Similarity=0.233 Sum_probs=98.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce-eeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT-RDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT-~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||++++++.. . ...++.|+ .+.....+..++. .+.||||||..+. . .....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~~ 70 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK-F-MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF---------R-AVTRS 70 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH---------H-HHHHH
Confidence 689999999999999999999763 2 23344333 2333334455554 5679999995432 1 12345
Q ss_pred HHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++++|++|+|+|+++.. . ...+.|+++|+||+|+.+..... .+.. .++. ...+.
T Consensus 71 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~--~~~~-----~~~~----~~~~~ 139 (166)
T cd04122 71 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT--YEEA-----KQFA----DENGL 139 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC--HHHH-----HHHH----HHcCC
Confidence 778999999999999761 1 12467999999999997653211 0111 1111 12356
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|..+...+
T Consensus 140 ~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 140 LFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999887654
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-19 Score=191.85 Aligned_cols=149 Identities=22% Similarity=0.319 Sum_probs=111.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+|+++|.||||||||+|+|++.+. .+.+.+|+|+|+....+.+.+. .+.||||||+.+..+....+. ...+...+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~-~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~--f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARV-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAA--FKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce-eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHH--HHHHHHHh
Confidence 5899999999999999999998764 4889999999999888887665 899999999854321111122 34466778
Q ss_pred hhccEEEEEeccchhh---H-------H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC-
Q 007334 404 MRAHVVALVLDAEEVR---A-------V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP- 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~---~-------~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 468 (607)
..||++|+|+|++++. . . ..++|+++|+||+|+.+... . .+ .. .. .+.+
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~--~---~~----~~--~~-----~~~~~ 338 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--P---RI----DR--DE-----ENKPI 338 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh--H---HH----HH--Hh-----cCCCc
Confidence 8999999999998751 0 1 13689999999999975311 0 00 00 00 1234
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++++.+.+.+.
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999988764
|
|
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=168.53 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=106.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||++++...... ...|. +. .....+...+..+.+|||||+. ++...+..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt--~g--~~~~~~~~~~~~~~i~D~~Gq~----------~~~~~~~~ 80 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPT--IG--FNVETVEYKNISFTVWDVGGQD----------KIRPLWRH 80 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc--cccCC--cc--eeEEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999865542 22221 22 2233456678899999999987 56667778
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------Cc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (607)
++..+|++|+|+|+++..+..+. ++.+++.+. .++.|+++|+||+|+..... .++. ...+++. .+
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~--~~~~---~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN--AAEI---TDKLGLHSLRQRHWYI 155 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC--HHHH---HHHhCccccCCCceEE
Confidence 89999999999999986554431 222333221 24789999999999875422 1221 1223332 23
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|+|+++++++|.+.+.
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999976654
|
|
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-19 Score=175.34 Aligned_cols=147 Identities=22% Similarity=0.243 Sum_probs=102.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC---eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG---RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.. +.....+.++.|.....+.+++ ..+.||||||...+. .....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~----------~l~~~ 69 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG----------KMLDK 69 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH----------HHHHH
Confidence 489999999999999999999764 3334455566677666666643 477899999953221 12235
Q ss_pred HHhhccEEEEEeccchhh-----------H--H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A--V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~--~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
+++.||++|+|+|+++.. . . ..+.|+++|+||+|+.+...... +.. ..+. ..
T Consensus 70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~--~~~-----~~~~----~~ 138 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKD--DKH-----ARFA----QA 138 (215)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCH--HHH-----HHHH----HH
Confidence 678999999999999750 0 1 12357999999999975422110 110 1111 12
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+.+++++||++|.|++++|+.+.+.+..
T Consensus 139 ~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 NGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35689999999999999999999886553
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=171.64 Aligned_cols=153 Identities=22% Similarity=0.304 Sum_probs=106.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC------CceeecCCCCceeeeEEEEEEEc--------------CeEEEEEecCCCcc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE------DRVLVGPEAGLTRDSVRVHFEYQ--------------GRTVYLVDTAGWLQ 384 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~------~~~~~~~~~gtT~~~~~~~~~~~--------------~~~~~liDTpG~~~ 384 (607)
++|+++|++|+|||||+++|++. +....+..+|+|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999963 22234456688888776666654 67899999999632
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcH
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 454 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 454 (607)
. ......++..+|++++|+|++++ .....++|+++|+||+|+..........+.+.
T Consensus 81 ~----------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~---- 146 (192)
T cd01889 81 L----------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMK---- 146 (192)
T ss_pred H----------HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHH----
Confidence 1 12233556679999999999874 11124789999999999975432222222222
Q ss_pred HHHHhhCC--CCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 455 QEIQTVIP--QVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 455 ~~~~~~~~--~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.+...+. ...+.+++++||++|.|+++|++.+...+
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 22222211 12367999999999999999998887643
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=167.69 Aligned_cols=157 Identities=13% Similarity=0.160 Sum_probs=107.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++..+.. +... ++..+.....+..++ ..+.+|||+|.. ++......
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~-T~g~~~~~~~i~~~~~~~~l~iwDt~G~~----------~~~~~~~~ 68 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQ-TLGVNFMEKTISIRGTEITFSIWDLGGQR----------EFINMLPL 68 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--CCCC-ccceEEEEEEEEECCEEEEEEEEeCCCch----------hHHHhhHH
Confidence 79999999999999999999876522 1111 133344334455555 578999999997 45555667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCc-----CcHHHHHHHHHhcCCCCcEEee
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGT-----GSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~-----~~~~~~~~~~~~~~~~~~i~iS 273 (607)
++.+||++++|+|++++.+..+. ++...+.+..+..+.|+|+||+|+..... .........+...+. +++++|
T Consensus 69 ~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~e~S 147 (182)
T cd04128 69 VCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-PLIFCS 147 (182)
T ss_pred HCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCC-EEEEEe
Confidence 88999999999999987776652 23333333322333478999999863211 111222233344554 789999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.+.+.+.
T Consensus 148 Ak~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 148 TSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=170.25 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=101.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++++... + ..++..|..+.....+.+++. .+.||||||..+.. .. ...+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~-~~~~ 69 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-F-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD---------RL-RPLS 69 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-C-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh---------hh-hhhh
Confidence 589999999999999999999753 2 344545554544445566664 56799999964431 11 1236
Q ss_pred HhhccEEEEEeccchhh--------H------HhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC-C
Q 007334 403 LMRAHVVALVLDAEEVR--------A------VEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT-G 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~--------~------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 466 (607)
++.+|++|+|+|+++.. . ...+.|+|+|+||+|+.+.....+..... .+.+..+..+.++... .
T Consensus 70 ~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~ 149 (175)
T cd01874 70 YPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKA 149 (175)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCC
Confidence 77899999999998750 0 12368999999999986542211111100 0112222222222222 3
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+++++||++|.|++++|+.++..
T Consensus 150 ~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 150 VKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH
Confidence 689999999999999999988763
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-19 Score=162.29 Aligned_cols=140 Identities=16% Similarity=0.109 Sum_probs=97.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|++|||||||+|+|++.... .. .|.. +.+.+ .+|||||+... ...++......+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~---~t~~-----~~~~~---~~iDt~G~~~~------~~~~~~~~~~~~ 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK---KTQA-----VEYND---GAIDTPGEYVE------NRRLYSALIVTA 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc---ccee-----EEEcC---eeecCchhhhh------hHHHHHHHHHHh
Confidence 6999999999999999999987542 11 1211 12222 68999998411 113344444568
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
+++|++++|+|++++.+..+..+ +... ..|+++|+||+|+.+.. ...+.....+...+..+++++||++|.|++
T Consensus 61 ~~ad~vilv~d~~~~~s~~~~~~---~~~~--~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 134 (142)
T TIGR02528 61 ADADVIALVQSATDPESRFPPGF---ASIF--VKPVIGLVTKIDLAEAD-VDIERAKELLETAGAEPIFEISSVDEQGLE 134 (142)
T ss_pred hcCCEEEEEecCCCCCcCCChhH---HHhc--cCCeEEEEEeeccCCcc-cCHHHHHHHHHHcCCCcEEEEecCCCCCHH
Confidence 99999999999999887765433 3222 35999999999987532 222333333444555578999999999999
Q ss_pred HHHHHhc
Q 007334 282 ELYEALR 288 (607)
Q Consensus 282 eL~~~i~ 288 (607)
++++.|.
T Consensus 135 ~l~~~l~ 141 (142)
T TIGR02528 135 ALVDYLN 141 (142)
T ss_pred HHHHHHh
Confidence 9999874
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=170.29 Aligned_cols=146 Identities=22% Similarity=0.207 Sum_probs=99.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc------------CeEEEEEecCCCcccccccCc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ------------GRTVYLVDTAGWLQREKEKGP 391 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~ 391 (607)
.+||+++|.+|||||||++++++.. ......+.++.+.....+.+. ...+.||||||..+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------ 76 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK-FNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF------ 76 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH------
Confidence 4799999999999999999999763 333334444444444444433 256789999995332
Q ss_pred chhHHHHHHHHHhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 392 ASLSVMQSRKNLMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 392 ~~~~~~~~~~~i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
. .....+++.+|++++|+|+++.. .. ..+.|+++|+||+|+.+...... +.. .+
T Consensus 77 ---~-~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~--~~~-----~~ 145 (180)
T cd04127 77 ---R-SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE--EQA-----KA 145 (180)
T ss_pred ---H-HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH--HHH-----HH
Confidence 1 22345778999999999998761 11 13679999999999976432111 111 11
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.+ ..+++++++||++|.|++++|+.+.+.+
T Consensus 146 ~~~----~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 146 LAD----KYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHH----HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111 1256899999999999999999998754
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=7e-19 Score=164.03 Aligned_cols=154 Identities=21% Similarity=0.193 Sum_probs=106.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|+|++...... ..+. .+.+.....+.+. ...+.+|||||+. .+......
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~ 68 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD-LAAT--IGVDFKVKTLTVDGKKVKLAIWDTAGQE----------RFRTLTSS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCc--ccceEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHH
Confidence 799999999999999999998765321 1221 2222222223333 3578999999987 44455566
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
+++.+|++++|+|++++.+..+.. +...+.+. ..+.|+++|+||+|+.... ...+.........++ +++++||++
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~~ 146 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE-VTREEGLKFARKHNM-LFIETSAKT 146 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc-cCHHHHHHHHHHcCC-EEEEEecCC
Confidence 788999999999998876665422 33333333 2478999999999997432 223333334444555 689999999
Q ss_pred CCChHHHHHHhccc
Q 007334 277 GLGMTELYEALRPS 290 (607)
Q Consensus 277 g~gi~eL~~~i~~~ 290 (607)
|.|++++++.+.+.
T Consensus 147 ~~gi~~~~~~~~~~ 160 (161)
T cd01863 147 RDGVQQAFEELVEK 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999988653
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=167.03 Aligned_cols=153 Identities=17% Similarity=0.167 Sum_probs=110.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++.+..+ ...... ++.+.....+..++ ..+.+|||||+. ++......
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 67 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY--PTEYVP--TAFDNFSVVVLVDGKPVRLQLCDTAGQD----------EFDKLRPL 67 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCC--ceeeeeeEEEEECCEEEEEEEEECCCCh----------hhcccccc
Confidence 699999999999999999987654 233333 44555444445554 578899999997 33334455
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHhcC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLMLG 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~~~ 265 (607)
++..+|++++|+|++++.+.... .+...++...++.|+++|+||+|+... +....++........+
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 78899999999999988776653 244444444457899999999998642 1223333444455566
Q ss_pred CCCcEEeecCCCCChHHHHHHhc
Q 007334 266 FGDPIAISAETGLGMTELYEALR 288 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~ 288 (607)
..+++++||++|.|++++++.+.
T Consensus 148 ~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHH
Confidence 66789999999999999998764
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-18 Score=168.40 Aligned_cols=159 Identities=17% Similarity=0.199 Sum_probs=108.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|++.++.. ..... ++..+.....+..++ ..+.+|||||.. ++......
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 69 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-GPYQN-TIGAAFVAKRMVVGERVVTLGIWDTAGSE----------RYEAMSRI 69 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-cCccc-ceeeEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHh
Confidence 79999999999999999999876531 11221 122222233444454 457799999987 33344456
Q ss_pred HhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhCCCCcEEEEecCCCcccCC----cCcHHHHHHHHHhcCCCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNG----TGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
++..+|++++|+|+++..+..+ ..+.+.++...++.|+++|+||+|+.... .....+........+. +++++||
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 148 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-QHFETSS 148 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-eEEEEeC
Confidence 7789999999999988765544 22444444444578999999999986432 1122222233344454 6799999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|+++|++.|.+.+-.
T Consensus 149 ~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 149 KTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876643
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-19 Score=165.29 Aligned_cols=149 Identities=22% Similarity=0.257 Sum_probs=100.3
Q ss_pred EEEEecCCCCchhHHHHHhhccce--eeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRRE--ALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~--~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++|++... .......+ .........+..+.+|||||.. ++...+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g------~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVG------FNVESFEKGNLSFTAFDMSGQG----------KYRGLWEH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccc------cceEEEEECCEEEEEEECCCCH----------hhHHHHHH
Confidence 489999999999999999998642 11221222 2222334577899999999987 45556667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC----C-CCc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG----F-GDP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~----~-~~~ 269 (607)
++..+|++++|+|++++.+.... ++..+++.. ..+.|+++|+||+|+..... ... ........ . ..+
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~-~~~~l~~~~~~~~~~~~ 141 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVK-ITQLLGLENIKDKPWHI 141 (162)
T ss_pred HHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHH-HHHHhCCccccCceEEE
Confidence 88999999999999987654331 122222211 13789999999999875421 111 11111111 1 136
Q ss_pred EEeecCCCCChHHHHHHhcc
Q 007334 270 IAISAETGLGMTELYEALRP 289 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~ 289 (607)
+++||++|.|+++++++|.+
T Consensus 142 ~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 142 FASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEeeCCCCCchHHHHHHHhc
Confidence 89999999999999999864
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=164.15 Aligned_cols=157 Identities=18% Similarity=0.143 Sum_probs=109.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||++++++...... ..+. .+.+.....+..++ ..+.+|||||+. ++....
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~ 71 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHT--IGVEFLNKDLEVDGHFVTLQIWDTAGQE----------RFRSLR 71 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCc--eeeEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhH
Confidence 46899999999999999999997664221 1121 33343333444444 467899999987 555667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
..+++.+|++++|+|++++.+..... +...+... ..+.|+++|+||+|+.. ......+.......++..++++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e 150 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQVSTEEAQAWCRENGDYPYFE 150 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc-cccCHHHHHHHHHHCCCCeEEE
Confidence 77899999999999999876555422 22222221 13679999999999874 2333344444455666557899
Q ss_pred eecCCCCChHHHHHHhccc
Q 007334 272 ISAETGLGMTELYEALRPS 290 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~ 290 (607)
+||++|.|+.++++.+.+.
T Consensus 151 ~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 151 TSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999988753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=168.10 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=105.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||+++|++... .. +. .|.......+...+..+.+|||||+. ++...+..++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~--~~--~T~~~~~~~~~~~~~~i~l~Dt~G~~----------~~~~~~~~~~ 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ--PI--PTIGFNVETVEYKNLKFTIWDVGGKH----------KLRPLWKHYY 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC--cC--CcCceeEEEEEECCEEEEEEECCCCh----------hcchHHHHHh
Confidence 489999999999999999998643 22 22 33333344566778899999999987 4445566788
Q ss_pred hccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC--C---CCcEEee
Q 007334 202 AKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG--F---GDPIAIS 273 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~--~---~~~i~iS 273 (607)
..+|++++|+|++++.+..+. ++...++.. ..+.|+++|+||+|+... ...++....+...+ . ..++++|
T Consensus 65 ~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 65 LNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 999999999999986544431 222233221 235799999999998643 22222222221111 1 1457899
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|+++++++|.+.+.
T Consensus 143 a~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999976554
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-19 Score=171.41 Aligned_cols=159 Identities=26% Similarity=0.310 Sum_probs=120.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee-----------------ccCCCCceeeeeEEEEee--eCCeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV-----------------YNTPDDHVTRDIREGLAK--LGDLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v-----------------~~~~~~~~T~~~~~~~~~--~~~~~~~liDTpG~ 180 (607)
..+|+++|..++|||||+++|++...... ....+ .|.+....... ..+..+.++||||+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERG--ITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCT--SSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcc--cccccccccccccccccceeecccccc
Confidence 46899999999999999999996542110 01123 56666666666 78999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHH-H-
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA-A- 258 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~-~- 258 (607)
. ++...+...+..+|++|+|+|+.++......+.+..+... +.|+|+|+||+|+...+....... .
T Consensus 81 ~----------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 81 E----------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKE 148 (188)
T ss_dssp H----------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHH
T ss_pred c----------ceeecccceecccccceeeeeccccccccccccccccccc--ccceEEeeeeccchhhhHHHHHHHHHH
Confidence 7 6777788889999999999999999999988888888887 789999999999984321111111 1
Q ss_pred HHHHhcCCC-----CcEEeecCCCCChHHHHHHhccchH
Q 007334 259 AESLMLGFG-----DPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 259 ~~~~~~~~~-----~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
......++. +++++||.+|.|+++|++.|.+.+|
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 112233333 5899999999999999999988765
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-19 Score=167.48 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=109.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++.... ..... +..+.....+.+++ ..+.+|||||... +......
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 67 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVP--TVFDHYAVSVTVGGKQYLLGLYDTAGQED----------YDRLRPL 67 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCC--ceeeeeEEEEEECCEEEEEEEEeCCCccc----------ccccccc
Confidence 7999999999999999999987642 22221 33333333444444 3578999999872 2223345
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhcC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLMLG 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~~ 265 (607)
++..+|++++|+|++++.+.++. .+...++...++.|+++|+||+|+.... ....+.........+
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 67899999999999987776653 2455555545689999999999986532 122233344455666
Q ss_pred CCCcEEeecCCCCChHHHHHHhccc
Q 007334 266 FGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
..+++++||++|.|++++++.+...
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHHHH
Confidence 6578999999999999999988754
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-19 Score=168.38 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=115.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeec---------------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVY---------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS 186 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~---------------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 186 (607)
+|+++|.+|+|||||+|+|++....... ...+ +|.+.......+.+..+.+|||||+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~liDtpG~~----- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERG--ITIKSGVATFEWPDRRVNFIDTPGHE----- 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcC--CCeecceEEEeeCCEEEEEEeCCCcH-----
Confidence 4899999999999999999987543211 1122 55566666667778899999999987
Q ss_pred hhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHHHHHHhc
Q 007334 187 GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAAAESLML 264 (607)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~~~~~~~ 264 (607)
.+...+..++..+|++++|+|++++......++...+... ++|+++|+||+|+....... .......+...
T Consensus 74 -----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (189)
T cd00881 74 -----DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREG--GLPIIVAINKIDRVGEEDLEEVLREIKELLGLI 146 (189)
T ss_pred -----HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHC--CCCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence 4555667788899999999999998877776666666653 78999999999998632211 11112222222
Q ss_pred C-------------CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 265 G-------------FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 265 ~-------------~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+ ..+++++||++|.|++++++.|...++
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 1 246799999999999999999987764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG0394 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-19 Score=161.77 Aligned_cols=163 Identities=19% Similarity=0.233 Sum_probs=124.1
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeec--cCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVY--NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~--~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
+..+.+|.|+|.+|||||||+|+++..++..-. ....++.|++.... -.-..++||||+|++ +|.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd---~~~vtlQiWDTAGQE----------RFq 72 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD---DRSVTLQIWDTAGQE----------RFQ 72 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc---CeEEEEEEEecccHH----------Hhh
Confidence 344689999999999999999999987753221 12234466665442 123578999999999 777
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHH-H-HHHHHhhC----CCCcEEEEecCCCcccC--CcCcHHHHHHHHHhcCC
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLE-V-GKWLRKHA----PQIKPIVAMNKCESLHN--GTGSLAGAAAESLMLGF 266 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~-~~~l~~~~----~~~p~ilV~NK~D~~~~--~~~~~~~~~~~~~~~~~ 266 (607)
+.-...++.||++++|+|+..+-+.+..+ + -++|.... ..-|+|+++||+|+... +.++......++...|-
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 77778899999999999999887777633 2 24444432 24689999999999763 45677777888888887
Q ss_pred CCcEEeecCCCCChHHHHHHhccchH
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
-+.|++||+.+.|+++.|+.+....-
T Consensus 153 ipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 153 IPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred ceeEEecccccccHHHHHHHHHHHHH
Confidence 78999999999999999999876543
|
|
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-19 Score=161.61 Aligned_cols=154 Identities=22% Similarity=0.239 Sum_probs=108.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++...... ..+. ++.+.....+.. ....+.+|||||+. .+.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKST--IGVDFKSKTIEIDGKTVKLQIWDTAGQE----------RFRSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCc--eeeeeEEEEEEECCEEEEEEEEecCChH----------HHHHHHH
Confidence 3799999999999999999998765332 1222 333333333333 34689999999986 4555667
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+++++|++++|+|++++.+... ..+...+.... .+.|+++|+||+|+........+.........+. +++++||++
T Consensus 68 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa~~ 146 (159)
T cd00154 68 SYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSAKT 146 (159)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCC-eEEEEecCC
Confidence 78899999999999988544433 22333343332 4689999999999974333333444444444454 789999999
Q ss_pred CCChHHHHHHhc
Q 007334 277 GLGMTELYEALR 288 (607)
Q Consensus 277 g~gi~eL~~~i~ 288 (607)
|.|++++++.|.
T Consensus 147 ~~~i~~~~~~i~ 158 (159)
T cd00154 147 GENVEELFQSLA 158 (159)
T ss_pred CCCHHHHHHHHh
Confidence 999999999875
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=162.98 Aligned_cols=157 Identities=19% Similarity=0.163 Sum_probs=109.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||++++++.... ...+.+.+.+.....+.+.+ ..+.+|||||+. .+...+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~ 73 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE----------RFRSIT 73 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC---CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 478999999999999999999875432 12222244555555556666 458899999987 455555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...++... .+.|+++|+||+|+...+...... ...+.......++++||+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~-~~~~~~~~~~~~~~~Sa~ 152 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQR-AEEFSDAQDMYYLETSAK 152 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHH-HHHHHHHcCCeEEEeeCC
Confidence 6789999999999999876555432 2333333332 368999999999987654433222 222333222467999999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
+|.|++++++.|.+.
T Consensus 153 ~~~gv~~l~~~i~~~ 167 (169)
T cd04114 153 ESDNVEKLFLDLACR 167 (169)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999998754
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=158.67 Aligned_cols=161 Identities=19% Similarity=0.273 Sum_probs=133.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+++.+||++-||||||+..++..+++..++.. +..|...+.+++ ...+++||||+|++ ++.+.|
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsdpt---vgvdffarlie~~pg~riklqlwdtagqe----------rfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSDPT---VGVDFFARLIELRPGYRIKLQLWDTAGQE----------RFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCCCc---cchHHHHHHHhcCCCcEEEEEEeeccchH----------HHHHHH
Confidence 67999999999999999999999887766433 566665554444 33689999999999 899999
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcE-EEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~-ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
..|++++-++++|+|+++..+.+. +-.|+.+. .|.+++ .+|+.|+|+...+++..++....+..+|. .+++
T Consensus 76 ksyyrnsvgvllvyditnr~sfeh--v~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVE 152 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEH--VENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVE 152 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHH--HHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEE
Confidence 999999999999999999888776 45666553 355554 58999999999888888888888888898 8999
Q ss_pred eecCCCCChHHHHHHhccchHHHHhh
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLR 297 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~ 297 (607)
+||++|.|+++.++.|.+.+...+.+
T Consensus 153 TSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 153 TSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred ecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999888765543
|
|
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=163.92 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=110.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHH-HH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTA-GM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~-~~ 196 (607)
..+|+++|.+|||||||++++++...... ..+. .+.+.....+.+.+ ..+.+|||||++ ++. ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 68 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPER-TEAT--IGVDFRERTVEIDGERIKVQLWDTAGQE----------RFRKSM 68 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCc-cccc--eeEEEEEEEEEECCeEEEEEEEeCCChH----------HHHHhh
Confidence 35899999999999999999997654211 1221 33444444455555 678999999987 333 23
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
...+++.+|++++|+|++++.+..+.. +.+.+... ..+.|+++|+||+|+.................... +++++|
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S 147 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSM-PLFETS 147 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCC-cEEEEe
Confidence 556788999999999999877766532 33333332 24689999999999876654444433334444444 789999
Q ss_pred cCC---CCChHHHHHHhccch
Q 007334 274 AET---GLGMTELYEALRPSV 291 (607)
Q Consensus 274 A~~---g~gi~eL~~~i~~~l 291 (607)
|++ +.|+++++..+.+.+
T Consensus 148 a~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 148 AKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred ccCCcCCCCHHHHHHHHHHHh
Confidence 999 889999998887544
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-19 Score=163.19 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=101.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||++++....+. ...| |.......+......+.+|||||+. ++......++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~p----t~g~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~ 65 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIP----TIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF 65 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCC----CCCcceEEEEECCEEEEEEECCCCH----------hHHHHHHHHh
Confidence 7999999999999999999765542 2222 1222223445577899999999997 4555667789
Q ss_pred hccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC-C----CCcEEee
Q 007334 202 AKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG-F----GDPIAIS 273 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~-~----~~~i~iS 273 (607)
+.||++++|+|+++..+..+. ++.+.+... ..+.|+++|+||+|+..... ..+....+ ... . ..++++|
T Consensus 66 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~-~~~~~~~~~~~~~~~S 142 (159)
T cd04150 66 QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS--AAEVTDKL-GLHSLRNRNWYIQATC 142 (159)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC--HHHHHHHh-CccccCCCCEEEEEee
Confidence 999999999999886544432 122333221 23589999999999865321 12211111 111 1 1346899
Q ss_pred cCCCCChHHHHHHhcc
Q 007334 274 AETGLGMTELYEALRP 289 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~ 289 (607)
|++|.|+++++++|.+
T Consensus 143 ak~g~gv~~~~~~l~~ 158 (159)
T cd04150 143 ATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999998864
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=164.01 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=107.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|++||.+|||||||++++++..+. .... .++..+.....+...+ ..+.+|||||+. ++......
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 68 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYK-ATIGVDFEMERFEILGVPFSLQLWDTAGQE----------RFKCIAST 68 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCC-CceeeEEEEEEEEECCEEEEEEEEeCCChH----------HHHhhHHH
Confidence 6999999999999999999987642 2221 1133444434444444 579999999997 55566678
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHh----hCC-CCcEEEEecCCCcccCCcC--cHHHHHHHHHhcCCCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK----HAP-QIKPIVAMNKCESLHNGTG--SLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~----~~~-~~p~ilV~NK~D~~~~~~~--~~~~~~~~~~~~~~~~~i~i 272 (607)
+++.+|++++|+|+++..+... +.+|+.. ..+ ..|+++|+||+|+.+.... ...........++. +++++
T Consensus 69 ~~~~ad~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e~ 145 (170)
T cd04108 69 YYRGAQAIIIVFDLTDVASLEH--TRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWSV 145 (170)
T ss_pred HhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEEE
Confidence 8999999999999987554443 2344432 222 3568999999998654321 12222233444555 67999
Q ss_pred ecCCCCChHHHHHHhccchH
Q 007334 273 SAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~ 292 (607)
||++|.|++++++.|.+.+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 146 SALSGENVREFFFRVAALTF 165 (170)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987654
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-19 Score=173.98 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=109.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|++||.+|||||||+++++...+.... .+. +..+.....+.. ....+.+|||||++ ++....
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~-~~t--ig~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 79 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-EPT--IGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGLR 79 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCcc-CCc--cceeEEEEEEEECCeEEEEEEEECCCch----------hhhhhh
Confidence 468999999999999999999876542111 111 222222222222 34689999999998 444555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..+|++|+|+|++++.+.... .+...+.+...+.|+++|+||+|+.... ..... .......++ +++++||++
T Consensus 80 ~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~~~~-~~~~~~~~~-~~~e~SAk~ 156 (219)
T PLN03071 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQ-VTFHRKKNL-QYYEISAKS 156 (219)
T ss_pred HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhcc-CCHHH-HHHHHhcCC-EEEEcCCCC
Confidence 6688999999999999988766652 2333344445679999999999986432 22222 233333444 679999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++|++|.+.+.+
T Consensus 157 ~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 157 NYNFEKPFLYLARKLAG 173 (219)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999876643
|
|
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=169.95 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=109.6
Q ss_pred EEEEecCCCCchhHHHHHhhccc------eeeeccCCCCceeeeeEEEEeeeC--------------CeeEEEecCCCCc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRR------EALVYNTPDDHVTRDIREGLAKLG--------------DLRFKVLDSAGLE 181 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~------~~~v~~~~~~~~T~~~~~~~~~~~--------------~~~~~liDTpG~~ 181 (607)
+|+++|++|||||||+++|++.. .......++ +|.+.......+. +..+.+|||||+.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g--~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERG--ITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcC--CeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 69999999999999999999731 111222344 6666665555544 6789999999985
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC--cHHHHHH
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAA 259 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--~~~~~~~ 259 (607)
.+..........+|++++|+|++++.+..+.+...+.... +.|+++|+||+|+...... .......
T Consensus 80 ----------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 80 ----------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL--CKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 3444445667789999999999988776665444444433 6799999999998753211 1111111
Q ss_pred H----HHhcCC--CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 260 E----SLMLGF--GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 260 ~----~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
. +...+. .+++++||++|.|+++|++.|.+.++.
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 1 111111 268999999999999999999887653
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=164.33 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=110.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++.+.... ..... ++.+.....+..++ ..+.+|||||+. ++.....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDP--TIEDSYRKQVEIDGRQCDLEILDTAGTE----------QFTAMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCC--cchheEEEEEEECCEEEEEEEEeCCCcc----------cchhhhH
Confidence 47999999999999999999976642 22222 33333333334433 578999999987 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..++++++|+|++++.+.+... +...+.+. ..+.|+++|+||+|+...+....+.........+..+++++||+
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 147 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSAR 147 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCC
Confidence 6788999999999999876655522 33333332 34789999999999976554444444444444553368999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++++...+
T Consensus 148 ~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 148 KRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987644
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-19 Score=166.37 Aligned_cols=145 Identities=23% Similarity=0.328 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+++|++.....+.++.|. ....+.+++..+.+|||||..... .....+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~----------~~~~~~ 78 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLR----------PYWRNY 78 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCEEEEEEECCCCHHHH----------HHHHHH
Confidence 357999999999999999999997743333333332 223455678889999999964321 123457
Q ss_pred HhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. .. ...++|+++|+||+|+.+..... .+.+ .+.........+
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~----~~~~~~~~~~~~ 150 (173)
T cd04154 79 FESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEE----EIRE----ALELDKISSHHW 150 (173)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHH----HHHH----HhCccccCCCce
Confidence 7899999999999875 11 12578999999999997642111 1111 111000112356
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+++..
T Consensus 151 ~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 151 RIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEeccCCCCcCHHHHHHHHhc
Confidence 8999999999999999988753
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-19 Score=165.42 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=103.6
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|++|||||||+|+|++.. ......++++.+.....+.+++. .+.+|||||..+.. ......+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----------~~~~~~~ 70 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR----------SLIPSYI 70 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHHHh
Confidence 79999999999999999999875 34466788888888777777764 57899999953321 1234567
Q ss_pred hhccEEEEEeccchh-----------h-HHhc--CCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 404 MRAHVVALVLDAEEV-----------R-AVEE--GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~-~~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+.+|++++|+|++++ . .... +.|+++|+||+|+........ +.. . ... ...++++
T Consensus 71 ~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~--~~~-~----~~~----~~~~~~~ 139 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVST--EEG-E----KKA----KELNAMF 139 (161)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCH--HHH-H----HHH----HHhCCEE
Confidence 889999999999875 0 1112 489999999999964322111 111 0 111 1125789
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++||++|.|++++++.+.+.
T Consensus 140 ~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 140 IETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHHh
Confidence 999999999999999988763
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=165.81 Aligned_cols=145 Identities=19% Similarity=0.163 Sum_probs=97.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++... .....+.++.+.....+..++ ..+.+|||||..+. . .....+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~---------~-~~~~~~ 70 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY---------R-TITTAY 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHHH
Confidence 6899999999999999999997643 222233333333333344444 46789999995432 1 123456
Q ss_pred HhhccEEEEEeccchh-----------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|+++. ... ....|+++|+||+|+.+..... .+.. .++.+ ..+.+
T Consensus 71 ~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~-----~~~~~----~~~~~ 139 (165)
T cd01865 71 YRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS--SERG-----RQLAD----QLGFE 139 (165)
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC--HHHH-----HHHHH----HcCCE
Confidence 7899999999999875 111 1367999999999997643211 0111 11111 12458
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|+.+...+
T Consensus 140 ~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 140 FFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987754
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=168.03 Aligned_cols=160 Identities=29% Similarity=0.437 Sum_probs=105.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc-hhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS-GSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 198 (607)
.++|+++|++|||||||+|+|++... .++..++ +|++.... .+. .+.+|||||+...... ......+...+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~--~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPG--VTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCc--eeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 57899999999999999999998764 3555666 77765433 222 6999999997422111 111123333333
Q ss_pred HHh----hccCEEEEEEecCCCCC-----------HhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh
Q 007334 199 NVL----AKTQFAIFMIDVRSGLH-----------PLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM 263 (607)
Q Consensus 199 ~~~----~~ad~vl~VvD~s~~~~-----------~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~ 263 (607)
.++ ..++++++|+|.+.... ..+.++...+... ++|+++|+||+|+..... .........
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~---~~~~~~~~~ 156 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNRD---EVLDEIAER 156 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcHH---HHHHHHHHH
Confidence 333 45689999999865321 1234455566554 789999999999865421 111122223
Q ss_pred cCC--------CCcEEeecCCCCChHHHHHHhccchH
Q 007334 264 LGF--------GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 264 ~~~--------~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
++. .+++++||++| |+++++++|.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 157 LGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred hcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 333 14699999999 99999999987654
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.4e-19 Score=164.02 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=102.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|++|||||||+++|+..... ...| |.......+...+..+.+|||||+. .+...+..++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 64 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIP----TIGFNVETVTYKNLKFQVWDLGGQT----------SIRPYWRCYY 64 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCC----ccCcCeEEEEECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence 4899999999999999999876542 2122 2222233455677899999999997 4555667788
Q ss_pred hccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC----CCcEEeec
Q 007334 202 AKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF----GDPIAISA 274 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~----~~~i~iSA 274 (607)
..+|++++|+|++++.+... ..+..+++.. ..++|+++|+||+|+..... ..+....+..... .+++++||
T Consensus 65 ~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 65 SNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSA 142 (158)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeec
Confidence 99999999999987543332 2333344322 24689999999999875321 1121111111011 14899999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|+++++++|.+
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999999864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-19 Score=165.40 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=98.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|++|||||||+|+|++... .....+.++.+.....+..++. .+.||||||..+. . .....+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~~~ 69 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY---------L-EVRNEF 69 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH---------H-HHHHHH
Confidence 4899999999999999999998753 3344454555554445555554 6679999995322 1 122356
Q ss_pred HhhccEEEEEeccchhh-----------H---Hh-----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A---VE-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
++.+|++|+|+|+++.. . .. .+.|+++|+||+|+.+...... +... ... .
T Consensus 70 ~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~-----~~~----~ 138 (168)
T cd04119 70 YKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE--DEGR-----LWA----E 138 (168)
T ss_pred hccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCH--HHHH-----HHH----H
Confidence 77899999999998650 0 11 3589999999999974321110 1100 111 1
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..+.+++++||++|.|++++|+.+.+.+
T Consensus 139 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 SKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1246899999999999999999988654
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=170.70 Aligned_cols=147 Identities=19% Similarity=0.142 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-C--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-G--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.. ......+.++.+.....+.++ + ..+.||||||..+. . .....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~---------~-~~~~~ 69 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF---------G-GMTRV 69 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh---------h-hhHHH
Confidence 489999999999999999999763 222233444455555555665 4 35779999996332 1 12346
Q ss_pred HHhhccEEEEEeccchhh----------HH--------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV--------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~--------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
++++||++|+|+|+++.. .+ ..++|+++|+||+|+.+..... .+.+. ++.+.
T Consensus 70 ~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~--~~~~~-----~~~~~--- 139 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKD--GEQMD-----QFCKE--- 139 (201)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccC--HHHHH-----HHHHH---
Confidence 778999999999998751 00 1467999999999997422111 11111 11111
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
....+++++||++|.|++++|+.+.+.+.
T Consensus 140 ~~~~~~~e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 140 NGFIGWFETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11258999999999999999999987654
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-19 Score=173.80 Aligned_cols=174 Identities=23% Similarity=0.292 Sum_probs=126.4
Q ss_pred ccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcc-hhH-H
Q 007334 319 DESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPA-SLS-V 396 (607)
Q Consensus 319 ~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~-~~~-~ 396 (607)
++..+.+.||++|.||||||||.|.++|...+.++..+.||+..+.+.+.-+..++.++||||+...+...... ..+ .
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 33456789999999999999999999999999999999999999999999999999999999998764222211 111 2
Q ss_pred HHHHHHHhhccEEEEEeccchh-----------hHHhcCCcEEEEEeCccCCCCcCch-HHHHHHH----HhcHHHHHhh
Q 007334 397 MQSRKNLMRAHVVALVLDAEEV-----------RAVEEGRGLVVIVNKMDLLSGRQNS-ALYKRVK----EAVPQEIQTV 460 (607)
Q Consensus 397 ~~~~~~i~~ad~~llViD~~~~-----------~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~----~~~~~~~~~~ 460 (607)
...+.++..||++++|+|+++. ...-..+|-|+|+||+|........ ...+.+. .....++++.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 2456888999999999999954 1112478999999999987653211 1111110 1111233333
Q ss_pred CCCCC-------------CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 461 IPQVT-------------GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 461 ~~~~~-------------~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+.... +-.+|++||++|+|++++-+++.....
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 33222 235999999999999999999987754
|
|
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.5e-19 Score=164.67 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=105.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeE-EEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIR-EGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~-~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
+|+++|.+|||||||+|+|++..+. ...+. +..+.. ...+...+.++.+|||||.. ++...+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPR--VLPEITIPADVTPERVPTTIVDTSSRP----------QDRANLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCC--cccceEeeeeecCCeEEEEEEeCCCch----------hhhHHHhhh
Confidence 6999999999999999999987652 22222 111111 11122245689999999987 333344556
Q ss_pred hhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCcCc-HHHHH-HHHHhc-CCCCcEEeecC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LAGAA-AESLML-GFGDPIAISAE 275 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-~~~~~-~~~~~~-~~~~~i~iSA~ 275 (607)
+..+|++++|+|++++.+..+. .+...++....+.|+++|+||+|+.+..... .+... ...... ....++++||+
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 147 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAK 147 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccc
Confidence 7899999999999987776652 2445555545578999999999997654321 11111 111122 22367999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.+...+
T Consensus 148 ~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 148 TLINVSEVFYYAQKAV 163 (166)
T ss_pred cccCHHHHHHHHHHHh
Confidence 9999999999887643
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-19 Score=185.68 Aligned_cols=151 Identities=26% Similarity=0.322 Sum_probs=112.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..|++||.||||||||+|+|++.. ..++++|+||.++....+.++ +.++.||||||+.+.... . ..+ ....++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~-~-~gL-g~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE-G-VGL-GHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc-c-chH-HHHHHHHH
Confidence 479999999999999999999875 557899999999998888887 789999999998754211 1 011 23456778
Q ss_pred hhccEEEEEeccch-----h--------hHH------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAEE-----V--------RAV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~~-----~--------~~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++|++|+|+|+++ + ..+ ..++|++||+||+|+... .+.++. +.+.+
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~---~e~l~~--------l~~~l--- 300 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA---EENLEE--------FKEKL--- 300 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC---HHHHHH--------HHHHh---
Confidence 88999999999963 1 001 137899999999998432 111111 12222
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
..+++++||++++|++++++.+.+.+.+.
T Consensus 301 -~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 301 -GPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred -CCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 15799999999999999999998876543
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=166.29 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=106.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|+|++.... ....+ +..+........ ....+.+|||||++. +......
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~l~~~D~~g~~~----------~~~~~~~ 67 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP-TEYVP---TVFDNYSATVTVDGKQVNLGLWDTAGQEE----------YDRLRPL 67 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCC---ceeeeeEEEEEECCEEEEEEEEeCCCccc----------ccccchh
Confidence 7999999999999999999987652 11122 222222223333 345799999999982 2223334
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCcC-----------cHHHHHHHHHhcCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGTG-----------SLAGAAAESLMLGF 266 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~-----------~~~~~~~~~~~~~~ 266 (607)
.+..+|++++|+|++++.+.... .+...+.....+.|+++|+||+|+...... ..+.........+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 56889999999999886555442 244444444457999999999999865422 12333444455555
Q ss_pred CCcEEeecCCCCChHHHHHHhcc
Q 007334 267 GDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
.+++++||++|.|++++++.|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 57899999999999999998864
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-19 Score=168.34 Aligned_cols=159 Identities=23% Similarity=0.229 Sum_probs=108.5
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 203 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 203 (607)
|+|++|||||||+|+|++.+. .+.+.++ +|.+...+.+.+. +.++.+|||||+........ ........++..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~---~~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPF--TTLEPNLGVVEVPDGARIQVADIPGLIEGASEGR---GLGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCc--eeecCcceEEEcCCCCeEEEEeccccchhhhcCC---CccHHHHHHHhc
Confidence 589999999999999999865 4556666 8888888888777 89999999999863221111 111223456788
Q ss_pred cCEEEEEEecCCCC------CHhHH-HHHHHHHhhC--------CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCC
Q 007334 204 TQFAIFMIDVRSGL------HPLDL-EVGKWLRKHA--------PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGD 268 (607)
Q Consensus 204 ad~vl~VvD~s~~~------~~~~~-~~~~~l~~~~--------~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~ 268 (607)
+|++++|+|+++.. ...+. .+...+.... .++|+++|+||+|+.......... ...........
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~ 153 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-VRELALEEGAE 153 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-HHHHhcCCCCC
Confidence 99999999998873 22221 1222222211 368999999999997643221111 11222223347
Q ss_pred cEEeecCCCCChHHHHHHhccc
Q 007334 269 PIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
++++||++|.|++++++.+...
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 8999999999999999988653
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-19 Score=165.68 Aligned_cols=148 Identities=22% Similarity=0.203 Sum_probs=98.8
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCce---eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRV---LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~---~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+|+++|++|||||||+|+|++.... .......+|.......+.+++..+.+|||||+.... .....+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR----------SLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH----------HHHHHH
Confidence 4899999999999999999864211 111122334444445677788999999999964331 123456
Q ss_pred HhhccEEEEEeccchhh-----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++.. . ...++|+++++||+|+.......+ +.+.+.... +. ......
T Consensus 71 ~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~----~~~~~~~~~-~~-~~~~~~ 144 (167)
T cd04160 71 YAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEE----IKEVFQDKA-EE-IGRRDC 144 (167)
T ss_pred hCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHH----HHHHhcccc-cc-ccCCce
Confidence 78999999999998750 0 124789999999999876432111 111111100 00 112356
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|+++++++|.+
T Consensus 145 ~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCCcCHHHHHHHHhc
Confidence 8999999999999999988754
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-19 Score=163.30 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=95.8
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|++|||||||+++|....... ..|.+..+ ...+++.+..+.+|||||..+.. .....++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~ 66 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIPTIGFN--VETVTYKNLKFQVWDLGGQTSIR----------PYWRCYYSN 66 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCCccCcC--eEEEEECCEEEEEEECCCCHHHH----------HHHHHHhcC
Confidence 58999999999999999997654332 22222222 22455678899999999964331 123467789
Q ss_pred ccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 406 AHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 406 ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+|++|+|+|+++. ... ..++|+++|+||+|+.+.... ..+ ...+........+.+++
T Consensus 67 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~----~~i----~~~~~~~~~~~~~~~~~ 138 (158)
T cd04151 67 TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE----AEI----SEKLGLSELKDRTWSIF 138 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH----HHH----HHHhCccccCCCcEEEE
Confidence 9999999999864 011 136899999999999754211 111 11111111112235799
Q ss_pred EcccCCCCCHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~ 489 (607)
++||++|.|++++|+.+.+
T Consensus 139 ~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 139 KTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EeeccCCCCHHHHHHHHhc
Confidence 9999999999999998864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-19 Score=172.58 Aligned_cols=150 Identities=21% Similarity=0.233 Sum_probs=108.7
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeecc------------------------------CCCCceeeeeEEEEeeeCCee
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYN------------------------------TPDDHVTRDIREGLAKLGDLR 171 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~------------------------------~~~~~~T~~~~~~~~~~~~~~ 171 (607)
+|+|+|++|+|||||+|+|+....+++.+ ..+ +|++.....+.+.+.+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg--~T~~~~~~~~~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQG--ITIDVAYRYFSTPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCC--cCeecceeEEecCCce
Confidence 48999999999999999998755443311 134 7889888888889999
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCc
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGT 251 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~ 251 (607)
+.+|||||+. ++...+..++..+|++++|+|++.+....+.....++... ...++|+|+||+|+.....
T Consensus 79 ~~liDTpG~~----------~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~D~~~~~~ 147 (208)
T cd04166 79 FIIADTPGHE----------QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKMDLVDYSE 147 (208)
T ss_pred EEEEECCcHH----------HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEchhcccCCH
Confidence 9999999986 4445566678999999999999998777766555666554 1235788999999875321
Q ss_pred CcH----HHHHHHHHhcCCC--CcEEeecCCCCChHHHH
Q 007334 252 GSL----AGAAAESLMLGFG--DPIAISAETGLGMTELY 284 (607)
Q Consensus 252 ~~~----~~~~~~~~~~~~~--~~i~iSA~~g~gi~eL~ 284 (607)
... .+....+..+++. +++++||++|.|+++..
T Consensus 148 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 148 EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 111 1112223345542 47999999999998643
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-19 Score=164.45 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=98.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc----CeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ----GRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
+||+++|.+|||||||++++++.. +.....++++.+.....+.+. +..+.||||||..+. . ....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~---------~-~~~~ 69 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF---------D-AITK 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH---------H-HhHH
Confidence 489999999999999999999763 222233444455544445544 357889999995332 1 1234
Q ss_pred HHHhhccEEEEEeccchhh----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.+++.+|++++|+|+++.. .. ..++|+++|+||+|+........ +.. ..+.+ ..+.
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~--~~~-----~~~~~----~~~~ 138 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN--EEA-----EALAK----RLQL 138 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH--HHH-----HHHHH----HcCC
Confidence 5778999999999998761 11 23789999999999976432111 110 11111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+.+..
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 139 PLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999988764
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-18 Score=167.88 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=115.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++.++.... .+. +..+.....+.+.+ ..+.+|||||.+ .+...+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~t--i~~~~~~~~i~~~~~~i~l~l~Dt~G~~----------~~~~~~ 72 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLT--IGVEFGARMITIDNKPIKLQIWDTAGQE----------SFRSIT 72 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCC--ccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 468999999999999999999987653222 222 33444334444444 468899999987 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.....+...++ +++++||+
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 151 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEASAK 151 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEEEeCC
Confidence 7788999999999999987665542 222222222 34789999999999987555544555555556666 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++|+++...+.+
T Consensus 152 ~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 152 TAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998876644
|
|
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-19 Score=167.02 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=106.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||++++...... ...| |.......+...+..+.+|||||+. ++...+..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~----T~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~ 80 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV--TTIP----TIGFNVETVEYKNLKFTMWDVGGQD----------KLRPLWRH 80 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC----ccccceEEEEECCEEEEEEECCCCH----------hHHHHHHH
Confidence 368999999999999999999765442 2122 2222334456678899999999987 55566778
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------Cc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (607)
++..+|++|+|+|+++..+..+ .++.+.+... ..+.|+++|+||+|+..... ..+.. ..++.. .+
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~---~~l~~~~~~~~~~~~ 155 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS--TTEVT---EKLGLHSVRQRNWYI 155 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC--HHHHH---HHhCCCcccCCcEEE
Confidence 8999999999999987654443 2233333321 23689999999999865321 12211 122221 24
Q ss_pred EEeecCCCCChHHHHHHhccchHHH
Q 007334 270 IAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
+++||++|.|+++++++|.+.+...
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999998776543
|
|
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-19 Score=165.33 Aligned_cols=143 Identities=21% Similarity=0.220 Sum_probs=98.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+++++..... ..+.+|+.+.....+..++. .+.||||||..++. .. ...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~-~~~~ 69 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---------SM-RDLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCccccc---------ch-HHHH
Confidence 68999999999999999999976422 23344444555555666665 46689999964432 11 2246
Q ss_pred HhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++++|++++|+|.++.. .. ..++|+++|+||+|+........ .. . ..+.+. .+.
T Consensus 70 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~--~~-~----~~~~~~----~~~ 138 (163)
T cd04176 70 IKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSS--AE-G----RALAEE----WGC 138 (163)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCH--HH-H----HHHHHH----hCC
Confidence 77899999999998851 11 14789999999999865322111 00 0 111111 246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|..+.+.
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred EEEEecCCCCCCHHHHHHHHHHh
Confidence 89999999999999999988753
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=160.92 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=110.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+|++++... ...... ++.+......... ...+.+|||||.. .+......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDP--TIEDSYRKTIVVDGETYTLDILDTAGQE----------EFSAMRDL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCC--ChhHeEEEEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence 589999999999999999998753 333333 4445555555555 3578999999987 44555667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+..+|++++|+|.+++.+..+. .+...+.... ...|+++|+||+|+........+.........+. +++++||++
T Consensus 67 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S~~~ 145 (160)
T cd00876 67 YIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGC-PFIETSAKD 145 (160)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCC-cEEEeccCC
Confidence 78999999999999886554442 2333333322 3789999999999987444444444444455554 789999999
Q ss_pred CCChHHHHHHhccc
Q 007334 277 GLGMTELYEALRPS 290 (607)
Q Consensus 277 g~gi~eL~~~i~~~ 290 (607)
|.|++++++.|.+.
T Consensus 146 ~~~i~~l~~~l~~~ 159 (160)
T cd00876 146 NINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998754
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.3e-19 Score=163.92 Aligned_cols=144 Identities=23% Similarity=0.249 Sum_probs=100.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||++++++.. ......++++.+.....+..++. .+.+|||||..+.. .....+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------~~~~~~ 69 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ----------TITKQY 69 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH----------hhHHHH
Confidence 479999999999999999999764 33333444555555556666664 56799999954321 123356
Q ss_pred HhhccEEEEEeccchhh-------------HH-hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-------------AV-EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-------------~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|.++.. .. ..+.|+++|+||+|+.+...... +....++...+.+
T Consensus 70 ~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~-----------~~~~~~~~~~~~~ 138 (161)
T cd04117 70 YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGD-----------EQGNKLAKEYGMD 138 (161)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH-----------HHHHHHHHHcCCE
Confidence 77899999999998761 11 13689999999999975432111 1111111223468
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++|++|.+.
T Consensus 139 ~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 139 FFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999998753
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=161.91 Aligned_cols=143 Identities=18% Similarity=0.196 Sum_probs=95.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+||+++|.+|||||||++++...... ...|.+..+. ..+.+....+.+|||||+.+.. .....+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~pt~g~~~--~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~~~ 66 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIR----------PLWRHYFQ 66 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCCCCCcce--EEEEECCEEEEEEECCCCHhHH----------HHHHHHhc
Confidence 48999999999999999999755332 2333333222 2355677899999999964321 12345788
Q ss_pred hccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+||++|+|+|+++. ... ....|+++++||+|+.+.....+.. ..+.........+.+
T Consensus 67 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~--------~~~~~~~~~~~~~~~ 138 (159)
T cd04150 67 NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVT--------DKLGLHSLRNRNWYI 138 (159)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHH--------HHhCccccCCCCEEE
Confidence 99999999999874 011 1358999999999996542211111 111100011223467
Q ss_pred EEcccCCCCCHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++||++|.|++++|++|.+
T Consensus 139 ~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCCCHHHHHHHHhc
Confidence 89999999999999988753
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-19 Score=164.63 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=93.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++... .....| ++.......+..+ ...+.+|||||..+.. .....+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~ 69 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYIP-TIEDTYRQVISCSKNICTLQITDTTGSHQFP----------AMQRLS 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcCC-cchheEEEEEEECCEEEEEEEEECCCCCcch----------HHHHHH
Confidence 6899999999999999999997642 222222 2222222223333 3467899999965431 112346
Q ss_pred HhhccEEEEEeccchhh-----------H--Hh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A--VE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~--~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
+..+|++|+|+|+++.. . .. .++|+++|+||+|+.+...... +....++...
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----------~~~~~~~~~~ 138 (165)
T cd04140 70 ISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS-----------NEGAACATEW 138 (165)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH-----------HHHHHHHHHh
Confidence 67899999999998751 0 11 4689999999999976322111 0001111122
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++++||++|.|++++|+.|..
T Consensus 139 ~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 139 NCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred CCcEEEeecCCCCCHHHHHHHHHh
Confidence 468999999999999999998875
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.8e-19 Score=164.58 Aligned_cols=145 Identities=22% Similarity=0.192 Sum_probs=98.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++... .....+.++.+.....+..++ ..+.||||||..+ +. .....+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~---------~~-~~~~~~ 73 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES---------FR-SITRSY 73 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH---------HH-HHHHHH
Confidence 6999999999999999999997643 222223333444444455554 4678999999532 21 123467
Q ss_pred HhhccEEEEEeccchh----------h-HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----------R-AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~-~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++. . .. ..+.|+++|+||+|+....... .+... .+. ...+++
T Consensus 74 ~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~--~~~~~-----~~~----~~~~~~ 142 (168)
T cd01866 74 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS--YEEGE-----AFA----KEHGLI 142 (168)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC--HHHHH-----HHH----HHcCCE
Confidence 7889999999999875 1 11 1468999999999997542211 11110 111 123568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|..+.+.+
T Consensus 143 ~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 143 FMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999887754
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-19 Score=167.16 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=102.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.++||||||+++++... + ...+..|..+.....+..++. .+.||||+|..++ ... ...
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~-f-~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~---------~~~-~~~ 72 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC-F-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY---------DNV-RPL 72 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC-C-CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhh---------Hhh-hhh
Confidence 4799999999999999999999753 2 233433444444445566655 5679999995332 212 234
Q ss_pred HHhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHH-HHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKR-VKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 466 (607)
++++||++|+|+|.++. . ....+.|+|||+||+||.+.......... -.+.+..+.++.++...+
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 67899999999999986 1 11236899999999998642110000000 001133333444444456
Q ss_pred -CCEEEcccCCCCC-HHHHHHHHHHH
Q 007334 467 -IPVVFTSALEGRG-RIAVMHQVIDT 490 (607)
Q Consensus 467 -~~~v~iSA~~g~g-v~~l~~~i~~~ 490 (607)
++++++||++|.| |+++|..+++.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 4899999999998 99999988874
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-19 Score=166.36 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.++||||||+.+++... +. ..+..|..+.....+..++. .+.||||+|..++.. + ...+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~-~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~---------~-~~~~ 69 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FP-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR---------L-RPLS 69 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CC-CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc---------c-chhh
Confidence 589999999999999999999653 32 23333433444444556654 567999999754421 1 1246
Q ss_pred HhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHH-HHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKR-VKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 467 (607)
+++||++|+|+|.++. . ....+.|++||+||+||.+.... .... -.+.+..+..+.++...+.
T Consensus 70 ~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 70 YRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQY--LADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred cCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhh--hhhccCCCCCCHHHHHHHHHHcCC
Confidence 7899999999999875 0 11246899999999999653210 0000 0001112222223333355
Q ss_pred -CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 -PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 -~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.||+++|+.+++..
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHHHHH
Confidence 699999999999999999998754
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-19 Score=182.31 Aligned_cols=171 Identities=23% Similarity=0.305 Sum_probs=131.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
-+.|+|+|+||||||||+|+|+..+.++|++.+| ||||.....++++|.++.|+||+|+... ..+............
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~G--TTRDaiea~v~~~G~~v~L~DTAGiRe~-~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPG--TTRDAIEAQVTVNGVPVRLSDTAGIREE-SNDGIEALGIERARK 344 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCC--cchhhheeEeecCCeEEEEEeccccccc-cCChhHHHhHHHHHH
Confidence 4789999999999999999999999999999999 9999999999999999999999999852 222333345566677
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhC----------CCCcEEEEecCCCcccCCcCcHHHHH--HHHHhc-CC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA----------PQIKPIVAMNKCESLHNGTGSLAGAA--AESLML-GF 266 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~----------~~~p~ilV~NK~D~~~~~~~~~~~~~--~~~~~~-~~ 266 (607)
.+..||++++|+|+-...+..+..+.+.|.... ...|+|+|.||+|+...-........ ...... .+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 899999999999998778888877777776541 23789999999999875211111000 000111 23
Q ss_pred CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.....+||.+++|++.|.+.|.+.+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 233569999999999999999876654
|
|
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=164.81 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=103.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||++++..... ....|. +..+ .......+..+.+|||||+. ++...+..
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t--~~~~--~~~~~~~~~~l~l~D~~G~~----------~~~~~~~~ 76 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPT--IGFN--VETVTYKNISFTVWDVGGQD----------KIRPLWRH 76 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCc--cccc--eEEEEECCEEEEEEECCCCh----------hhHHHHHH
Confidence 36899999999999999999975543 122221 2222 23445577899999999987 45566777
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------Cc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (607)
+++.||++|+|+|++++.+..+ ..+...+... ..+.|+++|+||+|+..... ..+... .++.. .+
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~---~~~~~~~~~~~~~~ 151 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK--AAEITE---KLGLHSIRDRNWYI 151 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC--HHHHHH---HhCccccCCCcEEE
Confidence 8999999999999998655443 1222333221 24689999999999865321 111111 12221 35
Q ss_pred EEeecCCCCChHHHHHHhccch
Q 007334 270 IAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+++||++|.|+++++++|.+.+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 6899999999999999987653
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=162.16 Aligned_cols=144 Identities=19% Similarity=0.296 Sum_probs=96.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++... .....+....+........++. .+.+|||||..++. .....+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 69 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ----------TMHASY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh----------hhhHHH
Confidence 4899999999999999999997642 2222222222333333344444 56799999964331 122357
Q ss_pred HhhccEEEEEeccchhh----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 403 LMRAHVVALVLDAEEVR----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
++.+|++|+|+|+++.. .. ..++|+++|+||+|+.... . +.. ..+.+ ..+.++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~--~---~~~-----~~~~~----~~~~~~ 135 (161)
T cd04124 70 YHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV--T---QKK-----FNFAE----KHNLPL 135 (161)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH--H---HHH-----HHHHH----HcCCeE
Confidence 78999999999998750 11 1368999999999985321 0 110 01111 125689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++||++|.|++++|+.+.+.+.+
T Consensus 136 ~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 136 YYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999876543
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=165.80 Aligned_cols=157 Identities=16% Similarity=0.101 Sum_probs=103.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEe---eeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLA---KLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~---~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+|+++|.+|||||||+++++..... ...|. .+.+.....+ ...+..+.+|||||++ ++...+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t--~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 69 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPT--KGFNTEKIKVSLGNSKGITFHFWDVGGQE----------KLRPLW 69 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcC--CcCCc--cccceeEEEeeccCCCceEEEEEECCCcH----------hHHHHH
Confidence 57999999999999999999876542 22221 1122222222 2246789999999987 455556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HH-HHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHH--HhcCC---CCc
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VG-KWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAES--LMLGF---GDP 269 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~-~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~--~~~~~---~~~ 269 (607)
..++..+|++++|+|++++.+..+.. +. ..+... ..++|+++|+||+|+..... .+...... ...+. .++
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALS--VSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCC--HHHHHHHhCccccCCCCceEE
Confidence 67789999999999998865444321 11 122111 23689999999999864321 12111111 11111 146
Q ss_pred EEeecCCCCChHHHHHHhccchHH
Q 007334 270 IAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++||++|.|++++++.|.+.+.+
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHH
Confidence 899999999999999999887754
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=163.52 Aligned_cols=151 Identities=19% Similarity=0.116 Sum_probs=104.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|++|||||||+++|++...... . .|.........+.+.++.+|||||+. ++......
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~--~----~t~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~ 78 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT--S----PTIGSNVEEIVYKNIRFLMWDIGGQE----------SLRSSWNT 78 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc--C----CccccceEEEEECCeEEEEEECCCCH----------HHHHHHHH
Confidence 46899999999999999999987654322 1 22223334556678899999999987 45555667
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 271 (607)
++..+|++++|+|++++.+... .++.+.++.. ..+.|+++|+||+|+.... ..++....+. ...+ ++++
T Consensus 79 ~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~-~~~~ 155 (174)
T cd04153 79 YYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTW-HIQG 155 (174)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCce-EEEe
Confidence 8899999999999998654433 2233333322 2368999999999986532 1122111111 1122 4789
Q ss_pred eecCCCCChHHHHHHhcc
Q 007334 272 ISAETGLGMTELYEALRP 289 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~ 289 (607)
+||++|.|+++++++|.+
T Consensus 156 ~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 156 CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCCCCHHHHHHHHhc
Confidence 999999999999999864
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=164.94 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=98.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE---cCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY---QGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.++|+++|.+|||||||++++++.... ...|.++.+.....+.. .+..+.+|||||..+. . ....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---------~-~~~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---------R-PLWK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH---------H-HHHH
Confidence 479999999999999999999876433 23333333333333322 4568899999995332 1 1223
Q ss_pred HHHhhccEEEEEeccchhh-----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.||++++|+|+++.. . ...++|+++|+||+|+........ .+.... +. ......
T Consensus 71 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~-~~~~~~-----~~-~~~~~~ 143 (183)
T cd04152 71 SYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSE-VEKLLA-----LH-ELSAST 143 (183)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHH-HHHHhC-----cc-ccCCCC
Confidence 5677899999999998750 0 124689999999999864321111 111100 00 011112
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+++++||++|.|++++++.|.+.+.
T Consensus 144 ~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 144 PWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 357899999999999999999987664
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=167.09 Aligned_cols=146 Identities=23% Similarity=0.249 Sum_probs=99.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++... ...+..|+.+.....+.+++. .+.||||||..+.. .+ ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~l-~~~ 72 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF--IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS---------AM-RDQ 72 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch---------hh-HHH
Confidence 47999999999999999999997642 223333333444445555554 46689999965432 11 234
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..+.|+++|+||+|+.+...... +.. ..+.+ ..+
T Consensus 73 ~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~--~~~-----~~~~~----~~~ 141 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVST--GEG-----QELAK----SFG 141 (189)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH--HHH-----HHHHH----HhC
Confidence 67789999999999875 111 13789999999999865422111 000 11111 124
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++|+.+.+.+.
T Consensus 142 ~~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 142 IPFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=169.86 Aligned_cols=148 Identities=25% Similarity=0.325 Sum_probs=106.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.++|+++|++|||||||+|++++.. ..+.+.+++|.++....+.+++. .+.+|||||+.+.......+. ...+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~--~~~~~~~ 117 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEA--FRSTLEE 117 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHH--HHHHHHH
Confidence 3699999999999999999999864 45566778888877777777665 899999999854321111111 1223345
Q ss_pred HhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+..+|++++|+|++++. .+ ..++|+++|+||+|+.+..... .. ......+
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---------------~~-~~~~~~~ 181 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---------------ER-LEAGRPD 181 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---------------HH-hhcCCCc
Confidence 67899999999998651 11 1368999999999997652110 01 1123568
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++++.|...
T Consensus 182 ~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 182 AVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred eEEEEcCCCCCHHHHHHHHHhh
Confidence 9999999999999999988653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-18 Score=166.63 Aligned_cols=156 Identities=16% Similarity=0.191 Sum_probs=107.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||++++++.... ..... ++.+.....+.+.+ ..+.+|||||+. .+......
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRR--TVEEMHRKEYEVGGVSLTLDILDTSGSY----------SFPAMRKL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCC--chhhheeEEEEECCEEEEEEEEECCCch----------hhhHHHHH
Confidence 4899999999999999999987642 22222 33344444555555 578999999987 33344456
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccC-CcCcHHHHHHHHH-hcCCCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHN-GTGSLAGAAAESL-MLGFGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~-~~~~~~~~~~~~~-~~~~~~~i~iSA 274 (607)
++..+|++++|+|++++.+.++.. +...+.+. ..+.|+++|+||+|+... ............. ..+. .++++||
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa 145 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNC-GFVETSA 145 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCC-cEEEecC
Confidence 789999999999999876655422 32333332 236899999999998763 2222222222221 2222 6789999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|+++++++|.+.+.
T Consensus 146 ~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 146 KDNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999987654
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=166.56 Aligned_cols=152 Identities=29% Similarity=0.429 Sum_probs=111.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee-----------------ecCCCCceeeeEEEEEE--EcCeEEEEEecCCCccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL-----------------VGPEAGLTRDSVRVHFE--YQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~-----------------~~~~~gtT~~~~~~~~~--~~~~~~~liDTpG~~~~ 385 (607)
+.|+++|+.++|||||+++|++..... .....+.|.+.....+. ..+..+.++||||+.++
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 579999999999999999998653211 11234778887777888 88999999999997543
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
...+..++..+|++|+|+|+.++ .....++|+|+|+||+|+.. ..+.+..+.+..
T Consensus 84 ----------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~-----~~~~~~~~~~~~ 148 (188)
T PF00009_consen 84 ----------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIE-----KELEEIIEEIKE 148 (188)
T ss_dssp ----------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSH-----HHHHHHHHHHHH
T ss_pred ----------eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchh-----hhHHHHHHHHHH
Confidence 13445678899999999999876 33456899999999999982 222333333333
Q ss_pred HHHhhCCCC--CCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 456 EIQTVIPQV--TGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 456 ~~~~~~~~~--~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+.+..... ..+|++++||++|.|+++|++.+.+.+
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 333333222 257999999999999999999887753
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=170.44 Aligned_cols=153 Identities=20% Similarity=0.175 Sum_probs=97.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+||+++|.+|||||||+++|++.... ...+.+..+.. ...+....+.||||||...+. . ....+++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~--~~~~Tig~~~~--~~~~~~~~l~iwDt~G~e~~~---------~-l~~~~~~ 66 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK--DTVSTVGGAFY--LKQWGPYNISIWDTAGREQFH---------G-LGSMYCR 66 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC--CCCCccceEEE--EEEeeEEEEEEEeCCCcccch---------h-hHHHHhc
Confidence 48999999999999999999976532 22333333322 223455678999999964431 1 1234678
Q ss_pred hccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcC-----------------chHHHHHHHHhc
Q 007334 405 RAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQ-----------------NSALYKRVKEAV 453 (607)
Q Consensus 405 ~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~-----------------~~~~~~~~~~~~ 453 (607)
.+|++|+|||+++.. . ...+.|+|+|+||+||.+... .....+.. ..+
T Consensus 67 ~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~-~~~ 145 (220)
T cd04126 67 GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA-KAF 145 (220)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH-HHH
Confidence 999999999999850 1 123589999999999975110 00001110 011
Q ss_pred HHHHH------hhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 454 PQEIQ------TVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 454 ~~~~~------~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++. +.+....+++++++||++|.||+++|..+++.+.
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11110 0011112368999999999999999999987654
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=167.12 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=106.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|++.+.....+. .|.......+...+.++.+|||||+. .+......
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~------~t~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~ 80 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQ------PTQHPTSEELAIGNIKFTTFDLGGHQ----------QARRLWKD 80 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccC------CccccceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 478999999999999999999987654321 23333445556678899999999987 44455667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHH--h---------cC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESL--M---------LG 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~---------~~ 265 (607)
++..+|++++|+|++++.+.... .+.+.+.. ...+.|+++|+||+|+... ...++....+. . ..
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHHcCCCcccccccccCCc
Confidence 88999999999999886443331 22233322 1247899999999998643 12222221111 0 01
Q ss_pred CCCcEEeecCCCCChHHHHHHhccc
Q 007334 266 FGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
...++++||++|+|+++++++|.+.
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 2247999999999999999998753
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=162.91 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=98.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|++|||||||++++.+.... ....+..+.+.....+.+++. .+.||||||..+. . .....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~-~~~~~ 71 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS-ERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF---------R-TITQS 71 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc-ccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHH
Confidence 379999999999999999999865322 222233334444455666664 6789999995332 1 12345
Q ss_pred HHhhccEEEEEeccchh----------h-H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV----------R-A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~-~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|+++. . . ...+.|+++|+||+|+.+..... .+.. .++.+. ....
T Consensus 72 ~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~-----~~~~~~---~~~~ 141 (165)
T cd01864 72 YYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL--FEEA-----CTLAEK---NGML 141 (165)
T ss_pred HhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHH-----HHHHHH---cCCc
Confidence 67789999999999986 0 0 12368999999999997643211 1111 011111 1124
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+.+.+
T Consensus 142 ~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 142 AVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998875
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=169.23 Aligned_cols=170 Identities=22% Similarity=0.287 Sum_probs=129.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc--hhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS--GSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~~~~~~~ 197 (607)
...||+||.||||||||.|.++|.+.+.++.... ||+....+.+.-+..++.+.||||....... ..+.....+..
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~--TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVH--TTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCcccccccccc--ceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 4689999999999999999999999988998887 9999999998888999999999999854321 11111223344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc---------------HHHHHHHHH
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS---------------LAGAAAESL 262 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~---------------~~~~~~~~~ 262 (607)
..++..||+++.|+|+++.-.+....++..|++. .++|-|+|.||+|..+..... ..+..+.+.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 5678999999999999986666666677777764 478999999999987653211 011111111
Q ss_pred hc-------------CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 263 ML-------------GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 263 ~~-------------~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.. +|..+|.+||++|+|+++|.++|....+
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 11 2445899999999999999999987654
|
|
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=162.93 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=98.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++... .....+..+.+.....+..++. .+.+|||||+.+.. .....+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------~~~~~~ 69 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF-KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR----------SVTRSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHH----------HhHHHH
Confidence 4899999999999999999997642 2223333344444444555554 67799999964331 123456
Q ss_pred HhhccEEEEEeccchh----------h----HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----------R----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~----~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|+++. . ....+.|+++|+||+|+........ +.. ..+.. ..+.+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~--~~~-----~~~~~----~~~~~ 138 (161)
T cd04113 70 YRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTF--LEA-----SRFAQ----ENGLL 138 (161)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCH--HHH-----HHHHH----HcCCE
Confidence 7889999999999985 0 1124789999999999975422111 111 01111 12478
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++|+++.+.
T Consensus 139 ~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 139 FLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 9999999999999999988763
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=160.53 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=101.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|++|||||||+|+|.+... +. . .|.... +.+. .+|||||+....+ ++.......+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~---~--~~~~v~-----~~~~--~~iDtpG~~~~~~------~~~~~~~~~~ 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LA---R--KTQAVE-----FNDK--GDIDTPGEYFSHP------RWYHALITTL 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cC---c--cceEEE-----ECCC--CcccCCccccCCH------HHHHHHHHHH
Confidence 799999999999999999987542 11 1 222222 2222 2699999863321 3344445568
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-CCcEEeecCCCCCh
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-GDPIAISAETGLGM 280 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSA~~g~gi 280 (607)
..||++++|+|++++.+.... |+.+...+.|+++|+||+|+.... .+.....+...++ .+++++||++|+|+
T Consensus 63 ~~ad~il~v~d~~~~~s~~~~----~~~~~~~~~~ii~v~nK~Dl~~~~---~~~~~~~~~~~~~~~p~~~~Sa~~g~gi 135 (158)
T PRK15467 63 QDVDMLIYVHGANDPESRLPA----GLLDIGVSKRQIAVISKTDMPDAD---VAATRKLLLETGFEEPIFELNSHDPQSV 135 (158)
T ss_pred hcCCEEEEEEeCCCcccccCH----HHHhccCCCCeEEEEEccccCccc---HHHHHHHHHHcCCCCCEEEEECCCccCH
Confidence 899999999999987655442 333333467999999999986522 2333444556665 37899999999999
Q ss_pred HHHHHHhccchHH
Q 007334 281 TELYEALRPSVED 293 (607)
Q Consensus 281 ~eL~~~i~~~l~~ 293 (607)
++|++.+.+.+.+
T Consensus 136 ~~l~~~l~~~~~~ 148 (158)
T PRK15467 136 QQLVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHHHhchh
Confidence 9999999877654
|
|
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=170.77 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=102.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. +. ..+..|..+.....+..++. .+.||||||..++ .. ....
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~-F~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~---------~~-~~~~ 80 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC-YP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY---------DN-VRPL 80 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC-CC-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh---------HH-HHHH
Confidence 4799999999999999999999653 22 23333333333344556654 5679999995332 11 1235
Q ss_pred HHhhccEEEEEeccchhh----H----------HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----A----------VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----~----------~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++++||++|+|||+++.. . ...+.|+|+|+||+||.+..... +....-.+.+..+.++.++...+
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 778999999999998761 1 12468999999999986421100 00000001223333444444456
Q ss_pred C-CEEEcccCCCC-CHHHHHHHHHHHHH
Q 007334 467 I-PVVFTSALEGR-GRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~-~~v~iSA~~g~-gv~~l~~~i~~~~~ 492 (607)
+ +++++||++|. ||+++|..++..+.
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 6 69999999998 89999999887653
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=163.34 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=98.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.+|||||||++++........ .|++..+ ...+..++..+.+|||||..+.. .....++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~T~~~~--~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~~ 82 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTT--IPTIGFN--VETVEYKNLKFTMWDVGGQDKLR----------PLWRHYY 82 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc--CCccccc--eEEEEECCEEEEEEECCCCHhHH----------HHHHHHh
Confidence 47999999999999999999975433222 2322222 23455678899999999963321 2334678
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+.+|++|+|+|+++. ... ...+|++||+||.|+.+..... .+. ..+.........++
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~i~----~~l~~~~~~~~~~~ 154 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTT----EVT----EKLGLHSVRQRNWY 154 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHH----HHH----HHhCCCcccCCcEE
Confidence 899999999999875 111 1358999999999986542211 111 11111111112345
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++||++|.|++++|+.+.+.+.+
T Consensus 155 ~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 155 IQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred EEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 7789999999999999999876543
|
|
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=162.06 Aligned_cols=142 Identities=19% Similarity=0.266 Sum_probs=95.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
+|+++|.+|||||||+++|++... ....++.|.+.. .+.+.+..+.+|||||..+.. .....++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~ 66 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFEKGNLSFTAFDMSGQGKYR----------GLWEHYY 66 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEEECCEEEEEEECCCCHhhH----------HHHHHHH
Confidence 489999999999999999997632 233444554332 345678899999999964331 1233567
Q ss_pred hhccEEEEEeccchhh-----------H------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-----------A------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-----------~------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
..+|++|+|+|+++.. . ...++|+++|+||+|+.+..... .+...+. +.. . ....
T Consensus 67 ~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~----~~~~~l~--~~~-~-~~~~ 138 (162)
T cd04157 67 KNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAV----KITQLLG--LEN-I-KDKP 138 (162)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHH----HHHHHhC--Ccc-c-cCce
Confidence 8999999999998751 0 01468999999999997542211 1111110 000 0 1112
Q ss_pred CCEEEcccCCCCCHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.+++++||++|.|++++|++|.+
T Consensus 139 ~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCCchHHHHHHHhc
Confidence 46899999999999999998754
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=166.03 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=101.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. + ...+..|..+.....+.+++. .+.||||||..+.. .. ...+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~---------~~-~~~~ 69 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-Y-PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD---------NV-RPLC 69 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-C-CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhh---------hc-chhh
Confidence 589999999999999999999763 2 233434433434445566665 56799999964331 11 1246
Q ss_pred HhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 467 (607)
++.||++|+|+|.++. . ....+.|+|+|+||+||.+.......+.... +.+..+.++.++...++
T Consensus 70 ~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 70 YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 7789999999999876 1 1124789999999999964211000000000 11233333444444565
Q ss_pred -CEEEcccCCCCC-HHHHHHHHHHH
Q 007334 468 -PVVFTSALEGRG-RIAVMHQVIDT 490 (607)
Q Consensus 468 -~~v~iSA~~g~g-v~~l~~~i~~~ 490 (607)
+++++||++|+| |+++|..+++.
T Consensus 150 ~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 150 EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred CEEEECccCcCCcCHHHHHHHHHHH
Confidence 799999999995 99999988874
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=161.76 Aligned_cols=144 Identities=21% Similarity=0.200 Sum_probs=101.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|++|||||||+++|++... .....+.++.+.....+.+++ ..+.+|||||..+. . ......
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~-~~~~~~ 69 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF---------R-SITSSY 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHHH
Confidence 4899999999999999999997643 333445555555555566666 46789999995332 1 223456
Q ss_pred HhhccEEEEEeccchhh----------H---H-hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------A---V-EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~---~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|++++. . . ..++|+++|+||+|+....... +.... +. ...++
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~--------~~----~~~~~ 137 (164)
T smart00175 70 YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEA--------FA----EEHGL 137 (164)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHH--------HH----HHcCC
Confidence 77899999999998761 0 0 1468999999999987632211 11111 11 11256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 138 ~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 138 PFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999988764
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-19 Score=171.39 Aligned_cols=150 Identities=22% Similarity=0.221 Sum_probs=103.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-C--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-G--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++..... ...++++.+.....+.+. + ..+.+|||||.... . .....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~-~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~~ 71 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE-VSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF---------R-SITRS 71 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH---------H-HHHHH
Confidence 799999999999999999999765322 233455556655555553 3 36789999995432 1 12345
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|+++. ... ....|+++|+||+|+.+...... +.. ..+.+ ..+
T Consensus 72 ~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~--~~~-----~~~~~----~~~ 140 (211)
T cd04111 72 YYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTR--EEA-----EKLAK----DLG 140 (211)
T ss_pred HhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCH--HHH-----HHHHH----HhC
Confidence 77889999999999875 111 12467899999999976422111 000 11111 234
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
.+++++||++|.|++++|+.|.+.+.+...
T Consensus 141 ~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 141 MKYIETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 789999999999999999999887655433
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-18 Score=167.60 Aligned_cols=146 Identities=20% Similarity=0.206 Sum_probs=99.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++... .....+..+.+.....+..++. .+.+|||||..+.. ......
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~----------~~~~~~ 69 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF-SESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR----------SLNNSY 69 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------hhHHHH
Confidence 4899999999999999999997643 2222333344444445555554 56799999953321 123456
Q ss_pred HhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|+++.. . .....|+++|+||+|+.+...... +....++...+++
T Consensus 70 ~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~-----------~~~~~~~~~~~~~ 138 (188)
T cd04125 70 YRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDS-----------NIAKSFCDSLNIP 138 (188)
T ss_pred ccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCH-----------HHHHHHHHHcCCe
Confidence 78899999999998761 0 113579999999999975432111 0111111123568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 139 ~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 139 FFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999887654
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=160.30 Aligned_cols=150 Identities=20% Similarity=0.232 Sum_probs=100.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
+|+++|.+|||||||+|+|++...... .| |.......+.. ....+.+|||||+. .+......+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~----t~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IP----TVGFNVEMLQLEKHLSLTVWDVGGQE----------KMRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cC----ccCcceEEEEeCCceEEEEEECCCCH----------hHHHHHHHH
Confidence 489999999999999999998765322 22 11122223333 35689999999987 444555677
Q ss_pred hhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-----CCcEEe
Q 007334 201 LAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-----GDPIAI 272 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-----~~~i~i 272 (607)
+..+|++++|+|++++.+... ..+.++++.. ..+.|+++|+||+|+..... ..+.........+ .+++++
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 142 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEITRRFKLKKYCSDRDWYVQPC 142 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--HHHHHHHcCCcccCCCCcEEEEec
Confidence 899999999999998754433 2233333322 24789999999999864321 1221111110111 147899
Q ss_pred ecCCCCChHHHHHHhcc
Q 007334 273 SAETGLGMTELYEALRP 289 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~ 289 (607)
||++|+|++++++.|..
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999998864
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=165.25 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=98.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+.+++... + ...+..|..+.....+.+++. .+.||||||..+.. . ....+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-~~~~~ 69 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-F-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD---------R-LRPLS 69 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-C-CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhh---------h-hhhhh
Confidence 589999999999999999999653 2 233444444444445556654 56799999964331 1 11246
Q ss_pred HhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHH-HHHhcHHHHHhhCCCCCC-
Q 007334 403 LMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKR-VKEAVPQEIQTVIPQVTG- 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 466 (607)
++++|++|+|+|+++.. ....+.|+++|+||+|+.+.....+.... ....+..+..+.++...+
T Consensus 70 ~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 149 (174)
T cd01871 70 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 149 (174)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 77899999999998750 01136899999999999653211100000 001122222222222223
Q ss_pred CCEEEcccCCCCCHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.+++++||++|.|++++|+.+.+
T Consensus 150 ~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 150 VKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred cEEEEecccccCCHHHHHHHHHH
Confidence 58999999999999999998875
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=163.01 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=98.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+++|.+|||||||+++|++.......++.|.+ ...+.+++..+.+|||||..+.. .....++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~~~ 80 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQESLR----------SSWNTYY 80 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCCHHHH----------HHHHHHh
Confidence 368999999999999999999876543333333322 23566778899999999964321 1223567
Q ss_pred hhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+.+|++++|+|+++.. .. ..++|+++++||+|+....... .+. +.+..........+
T Consensus 81 ~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~----~i~----~~l~~~~~~~~~~~ 152 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPA----EIS----ESLGLTSIRDHTWH 152 (174)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHH----HHH----HHhCcccccCCceE
Confidence 8999999999998751 11 1358999999999987532211 111 11111111123457
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|.|++++|+.|.+
T Consensus 153 ~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 153 IQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EEecccCCCCCHHHHHHHHhc
Confidence 999999999999999998753
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=166.88 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=101.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++++... +. ..+..|..+.....+..++. .+.||||||..+. ... ...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~---------~~l-~~~ 70 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA-FP-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY---------DRL-RTL 70 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CC-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhh---------hhh-hhh
Confidence 3799999999999999999999653 22 23333333434444455554 5679999996433 212 234
Q ss_pred HHhhccEEEEEeccchh------h--H------HhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV------R--A------VEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~------~--~------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 466 (607)
++++||++|+|+|+++. . . ...+.|++||+||.||.+.....+..... .+.+..+..+.++...+
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 67889999999999876 0 1 11478999999999996542211111110 01112222233333334
Q ss_pred -CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 -IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 -~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+++++||++|.|++++|+.+++.+
T Consensus 151 ~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999988754
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=164.97 Aligned_cols=146 Identities=27% Similarity=0.287 Sum_probs=105.8
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHHHhhcc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 407 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 407 (607)
++|++|||||||+|+|++.+. .+++++++|.++....+.++ +..+.+|||||+.+.... .+.+. .....++..+|
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~-~~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLG-NQFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCcc-HHHHHHHhccC
Confidence 579999999999999998754 67888999999888888888 899999999998543111 01111 13345677899
Q ss_pred EEEEEeccchhh-----------------H--H--------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh
Q 007334 408 VVALVLDAEEVR-----------------A--V--------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 408 ~~llViD~~~~~-----------------~--~--------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
++++|+|+++.. . . ..++|+++|+||+|+.......... ...
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-----------~~~ 145 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-----------VRE 145 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-----------HHH
Confidence 999999987531 0 0 1478999999999997653211100 111
Q ss_pred CCCCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 461 IPQVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 461 ~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.......+++++||++|.|++++++.+..
T Consensus 146 ~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 146 LALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 12234568999999999999999988765
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=167.27 Aligned_cols=157 Identities=24% Similarity=0.272 Sum_probs=101.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc-c-cCcchhHH---HH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-E-KGPASLSV---MQ 398 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~-~-~~~~~~~~---~~ 398 (607)
.++|+++|.+|||||||+|+|++.. ..++..+|+|++.... .++ .+.+|||||+..... . ...+.+.. ..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 4799999999999999999999875 5677889999886543 333 689999999643211 0 00122211 11
Q ss_pred HHHHHhhccEEEEEeccchh---------------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 399 SRKNLMRAHVVALVLDAEEV---------------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~---------------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
....+..+|++++|+|++.. .....++|+++|+||+|+.+.. .+..+.+ ...+
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~----~~~~ 157 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEI----AERL 157 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHH----HHHh
Confidence 12234457899999999642 1123589999999999997542 1112222 1111
Q ss_pred Hhh-CCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 458 QTV-IPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 458 ~~~-~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
... .....+.+++++||++| |++++++.|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 100 00011247899999999 99999999887543
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=169.92 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=105.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|++|||||||+++|++.. ......++++.+.....+.+++. .+.||||||..+. . ....
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~-~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~---------~-~~~~ 79 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNE-FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY---------R-AITS 79 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH---------H-HHHH
Confidence 34799999999999999999999764 33344455556665666666664 6789999995332 1 1234
Q ss_pred HHHhhccEEEEEeccchh-------hH-------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-------~~-------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|.++. .. ...+.|+++|+||+|+........ +..+.++...+
T Consensus 80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~-----------~~~~~l~~~~~ 148 (216)
T PLN03110 80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAE-----------EDGQALAEKEG 148 (216)
T ss_pred HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCH-----------HHHHHHHHHcC
Confidence 577899999999999865 00 123689999999999865432211 11111111236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+...+.+
T Consensus 149 ~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 149 LSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999876543
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=162.95 Aligned_cols=145 Identities=27% Similarity=0.422 Sum_probs=98.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee--------e------cCCCCceeeeEEEEEEE-----cCeEEEEEecCCCcccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL--------V------GPEAGLTRDSVRVHFEY-----QGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~--------~------~~~~gtT~~~~~~~~~~-----~~~~~~liDTpG~~~~~ 386 (607)
+|+++|++|||||||+++|++..... . ....|+|.+.....+.+ .+..+.||||||+.+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999999743211 1 12335666654444444 34567899999975431
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
..+..+++.+|++|+|+|++++ .....++|+++|+||+|+.+... . ...+ +
T Consensus 82 ----------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~----~~~~----~ 142 (179)
T cd01890 82 ----------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP-E----RVKQ----Q 142 (179)
T ss_pred ----------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH-H----HHHH----H
Confidence 2345678899999999999874 12246899999999999865321 1 1111 2
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.+.+. ....+++++||++|.|++++++.+.+.
T Consensus 143 ~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 143 IEDVLG-LDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHHhC-CCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 222211 112358999999999999999988764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=162.89 Aligned_cols=144 Identities=20% Similarity=0.186 Sum_probs=96.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee-ecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|++|||||||+|+|++..... ..+..|.+.. ...+.+++ ..+.||||||..+. . .....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~~~---------~-~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQERY---------R-SLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchHHH---------H-HHHHH
Confidence 689999999999999999999875432 2333333332 23344444 56789999995322 1 11234
Q ss_pred HHhhccEEEEEeccchhh-----------H--H-hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A--V-EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~--~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|+++.. . . ..+.|+++++||+|+....... .+... .+.. ..+.
T Consensus 70 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~--~~~~~-----~~~~----~~~~ 138 (163)
T cd01860 70 YYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS--TEEAQ-----EYAD----ENGL 138 (163)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC--HHHHH-----HHHH----HcCC
Confidence 677899999999998750 0 1 1357899999999987432211 11111 1111 1246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|+.++|+.+.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 139 LFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 899999999999999999988753
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=161.10 Aligned_cols=146 Identities=23% Similarity=0.236 Sum_probs=97.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCC-CceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
+||+++|.+|||||||+++|.+........+. ++..+.....+.++ ...+.+|||||.... . ....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~-~~~~ 70 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY---------S-DMVS 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH---------H-HHHH
Confidence 48999999999999999999854222233333 33345444444442 257889999995322 1 1234
Q ss_pred HHHhhccEEEEEeccchhh-----------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.++..+|++++|+|.++.. . ...+.|+++|+||+|+.+........ . ..+ ....+.
T Consensus 71 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---~----~~~----~~~~~~ 139 (164)
T cd04101 71 NYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQ---A----QAF----AQANQL 139 (164)
T ss_pred HHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHH---H----HHH----HHHcCC
Confidence 5778899999999998751 0 11368999999999997543221100 0 011 111256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 140 KFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHh
Confidence 899999999999999999988753
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=163.36 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=95.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++++.... .....+....+.....+..+ ...+.+|||||..+... ....+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~ 69 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG----------LRDGY 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc----------ccHHH
Confidence 4899999999999999999985432 11112222223222333333 34678999999754321 11235
Q ss_pred HhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 403 LMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+..+|++|+|+|+++.. ....++|+++|+||+|+.......+ . .++. .....++
T Consensus 70 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~---~------~~~~----~~~~~~~ 136 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAK---Q------ITFH----RKKNLQY 136 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHH---H------HHHH----HHcCCEE
Confidence 66899999999999861 1112799999999999974321110 0 0111 1235689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++||++|.|++++|+.+.+.+.
T Consensus 137 ~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 137 YEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred EEEeCCCCCChHHHHHHHHHHHH
Confidence 99999999999999999987653
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=165.82 Aligned_cols=150 Identities=17% Similarity=0.149 Sum_probs=98.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-Ce--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.. +. ..+..++.+.+...+... +. .+.||||||..+. ... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~-~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~---------~~~-~~~ 68 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK-FP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY---------DRL-RPL 68 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH---------HHH-HHH
Confidence 489999999999999999999764 22 333334333333344443 33 6789999995432 111 223
Q ss_pred HHhhccEEEEEeccchhh--------H------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR--------A------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~--------~------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.||++++|+|+++.. . ...+.|+|+|+||+|+........ .+..+..+.++...+.
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-------~v~~~~~~~~~~~~~~ 141 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDR-------KVTPAQAESVAKKQGA 141 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccC-------CcCHHHHHHHHHHcCC
Confidence 567899999999998750 1 124689999999999975421100 0101111111112244
Q ss_pred -CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 -PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 -~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++|..+.+.+..
T Consensus 142 ~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 142 FAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred cEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999877643
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=162.72 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=98.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++.. ......+..+.+.....+.+++. .+.||||||..+. .. ....
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~-~~~~ 73 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF---------RS-LRTP 73 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH---------HH-hHHH
Confidence 4799999999999999999999653 33333444455555555566655 5678999995332 11 2235
Q ss_pred HHhhccEEEEEeccchh-----------hHH-------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~-------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
+++.+|++++|+|.++. ... ..+.|+++|+||+|+.+.....+.... +.+ .
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~--------~~~---~ 142 (170)
T cd04116 74 FYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQA--------WCR---E 142 (170)
T ss_pred HhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHH--------HHH---H
Confidence 67889999999998865 000 135799999999998643211111111 111 1
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
....+++++||++|.|+.++|+.+++.
T Consensus 143 ~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 143 NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 223589999999999999999988753
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=168.66 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=107.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcccee-eeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREA-LVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~-~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+|+++|.+|||||||++++++.... .....++ ..+.....+.+ ....+.+|||||++ .+. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~---~~~~~~~~i~~~~~~~~l~i~Dt~G~~----------~~~--~ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASG---DDDTYERTVSVDGEESTLVVIDHWEQE----------MWT--E 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCc---cccceEEEEEECCEEEEEEEEeCCCcc----------hHH--H
Confidence 37999999999999999999866542 1111111 11333333333 44679999999987 111 1
Q ss_pred HHHhh-ccCEEEEEEecCCCCCHhH-HHHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLA-KTQFAIFMIDVRSGLHPLD-LEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~-~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..++. .+|++++|+|++++.+... .++...+... ..+.|+|+|+||+|+...+.+..++........+. +++++|
T Consensus 66 ~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~S 144 (221)
T cd04148 66 DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIETS 144 (221)
T ss_pred hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC-eEEEec
Confidence 12344 8999999999998766654 2344444443 24789999999999976654443433344444555 689999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.|...+.
T Consensus 145 A~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 145 AGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-19 Score=163.02 Aligned_cols=148 Identities=20% Similarity=0.243 Sum_probs=117.0
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
+..+||+++|.++||||-|+.+++.. .+.....+.+..+.....+.++++ +.+||||||+.+.. .-+
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrn-EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyr----------Ait 80 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRN-EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYR----------AIT 80 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccc-ccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhc----------ccc
Confidence 34689999999999999999999954 466667777778888777888887 55799999975552 223
Q ss_pred HHHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 400 RKNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
-.++++|.++++|||.+.. .....++++++|+||+||.+. +.++.+..+.++...
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~l-----------raV~te~~k~~Ae~~ 149 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHL-----------RAVPTEDGKAFAEKE 149 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhc-----------cccchhhhHhHHHhc
Confidence 4678899999999999875 122368999999999999764 334455556666666
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+..++++||+.+.|+++.|+.++..+
T Consensus 150 ~l~f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 150 GLFFLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred CceEEEecccccccHHHHHHHHHHHH
Confidence 88999999999999999998877654
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-18 Score=158.47 Aligned_cols=148 Identities=14% Similarity=0.070 Sum_probs=103.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.+|||||||+++++...+.. ..+ ++.......+.+++ ..+.+|||+|+.. ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~--~~~---~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~ 61 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ--LES---PEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQ 61 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC--CCC---CCccceEEEEEECCEEEEEEEEECCCCCc---------------hh
Confidence 69999999999999999998765421 111 11222234455566 5689999999971 12
Q ss_pred HhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC--CCCcEEEEecCCCccc--CCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA--PQIKPIVAMNKCESLH--NGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~--~~~p~ilV~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
++..+|++++|+|+++..+.+. ..+...+.... ++.|+++|+||+|+.. .+.+...+........+...++++||
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 141 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA 141 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence 4578999999999999888877 33444444332 4689999999999853 23333333333333443237899999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|++++|+.+.+
T Consensus 142 k~~~~i~~~f~~~~~ 156 (158)
T cd04103 142 TYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCCCHHHHHHHHHh
Confidence 999999999998864
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=163.38 Aligned_cols=144 Identities=24% Similarity=0.308 Sum_probs=97.8
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
+|+++|.+|||||||+++++... ....+++++.+.....+.+++. .+.+|||||..... ......++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~ 69 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQAD---------TEQLERSI 69 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCcccc---------cchHHHHH
Confidence 58999999999999999998643 2345555554444445556665 56799999965310 01234567
Q ss_pred hhccEEEEEeccchhh-------------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-------------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-------------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+.+|++|+|+|+++.. .. ..++|+++|+||+|+........ +....++...+.
T Consensus 70 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~-----------~~~~~~~~~~~~ 138 (165)
T cd04146 70 RWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVST-----------EEGEKLASELGC 138 (165)
T ss_pred HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH-----------HHHHHHHHHcCC
Confidence 8899999999998761 11 23799999999999864322110 011111112246
Q ss_pred CEEEcccCCC-CCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEG-RGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g-~gv~~l~~~i~~~~ 491 (607)
+++++||++| .|++++|..+.+.+
T Consensus 139 ~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 139 LFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHHH
Confidence 8999999999 49999999988654
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=159.77 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=99.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|.+|||||||++++++.......++.+.+. ..+.+.+..+.+|||||..... .....++..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~~~~ 66 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQDKIR----------PLWKHYYEN 66 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCChhhH----------HHHHHHhcc
Confidence 68999999999999999999876333333334333 3455678899999999964331 123456778
Q ss_pred ccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 406 AHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 406 ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+|++++|+|++++ .. ...+.|+++|+||+|+....... .+ ...+..........+++
T Consensus 67 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~----~~----~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 67 TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVS----EL----IEKLGLEKILGRRWHIQ 138 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHH----HH----HHhhChhhccCCcEEEE
Confidence 9999999999875 00 12478999999999997653211 11 12222211223456899
Q ss_pred EcccCCCCCHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~ 489 (607)
++||++|.|++++|+.|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999998764
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=166.69 Aligned_cols=147 Identities=20% Similarity=0.152 Sum_probs=100.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+++|++.. +.....+..+.+.....+.+++. .+.||||||..... .....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------~~~~~ 74 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR----------TITST 74 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH----------HHHHH
Confidence 4799999999999999999999764 22222333344444445555554 67799999964321 12345
Q ss_pred HHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+++.+|++++|+|+++.. ......|+++|+||+|+.+...... +.. ..+.+ ..+.+
T Consensus 75 ~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~--~~~-----~~~~~----~~~~~ 143 (199)
T cd04110 75 YYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVET--EDA-----YKFAG----QMGIS 143 (199)
T ss_pred HhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCH--HHH-----HHHHH----HcCCE
Confidence 778899999999998761 1123589999999999976432211 110 01111 12468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+...+.
T Consensus 144 ~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 144 LFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999987653
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-18 Score=161.18 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=97.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.+|||||||++++..... ....|++..+. ..+.+.+..+.+|||||..+.. .....++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~--~~~~~~~~~l~l~D~~G~~~~~----------~~~~~~~ 78 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNV--ETVTYKNISFTVWDVGGQDKIR----------PLWRHYY 78 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccce--EEEEECCEEEEEEECCCChhhH----------HHHHHHh
Confidence 47999999999999999999974432 22334333333 2345677899999999964331 1234567
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++||++|+|+|+++. ... ..+.|++||+||+|+.+.....+ +.+ .+.........+.
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i~~----~~~~~~~~~~~~~ 150 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAE----ITE----KLGLHSIRDRNWY 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHH----HHH----HhCccccCCCcEE
Confidence 899999999999875 111 13589999999999975432111 111 1111111112345
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++|++|.+.
T Consensus 151 ~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 151 IQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 7789999999999999988765
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=163.63 Aligned_cols=144 Identities=22% Similarity=0.258 Sum_probs=102.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC------Cce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE------DRV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK 389 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~------~~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 389 (607)
++|+++|++|+|||||+++|++. ... ......|+|.+.....+++++.++.++||||+.++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~---- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY---- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH----
Confidence 68999999999999999999864 111 11125689999888888888899999999997433
Q ss_pred CcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHHHH
Q 007334 390 GPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ 458 (607)
Q Consensus 390 ~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
...+..++..+|++++|+|+..+ .....++| +|+|+||+|+.... +.++.+.+.+...+.
T Consensus 79 ------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~---~~~~~~~~~i~~~l~ 149 (195)
T cd01884 79 ------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDE---ELLELVEMEVRELLS 149 (195)
T ss_pred ------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcH---HHHHHHHHHHHHHHH
Confidence 23345677889999999999875 23346777 78999999997432 223333333333333
Q ss_pred hhCCCCCCCCEEEcccCCCCCHH
Q 007334 459 TVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
+.-....++|++++||++|.|+.
T Consensus 150 ~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HhcccccCCeEEEeeCccccCCC
Confidence 22122346899999999999864
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=162.43 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=99.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|++|||||||++++++.. ......+..+.+.....+.+++ ..+.||||||..+. .......+
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~~~~ 72 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERF---------RKSMVQHY 72 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHH---------HHhhHHHh
Confidence 689999999999999999999754 2222334444455555566666 46789999995332 11122356
Q ss_pred HhhccEEEEEeccchhh----------H-----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------A-----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~-----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|++++. . ...++|+++|+||+|+........ +..+.++.....
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~-----------~~~~~~~~~~~~ 141 (170)
T cd04115 73 YRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPT-----------DLAQRFADAHSM 141 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCH-----------HHHHHHHHHcCC
Confidence 77899999999998760 1 113689999999999875432211 111111112347
Q ss_pred CEEEcccCC---CCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALE---GRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~---g~gv~~l~~~i~~~~ 491 (607)
+++++||++ +.|+.++|..+.+.+
T Consensus 142 ~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 142 PLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 899999999 899999999887654
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-18 Score=161.96 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=98.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.+|||||||++++....... ..|++..+. ..+++++..+.||||||..+. . .....++
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~---------~-~~~~~~~ 82 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNV--ETVEYKNISFTVWDVGGQDKI---------R-PLWRHYF 82 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc--ccCCcceeE--EEEEECCEEEEEEECCCCHHH---------H-HHHHHHh
Confidence 4799999999999999999998654322 233333332 245677889999999995332 1 1234577
Q ss_pred hhccEEEEEeccchhh-----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++||++|+|+|+++.. . ...+.|++||+||+|+.+.... +.+.+ .++-.........
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~----~l~l~~~~~~~~~ 154 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AEITD----KLGLHSLRQRHWY 154 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH----HHHHH----HhCccccCCCceE
Confidence 8999999999999751 1 1136899999999999765321 11111 1110000011234
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|+|++++|++|.+.+.
T Consensus 155 ~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHh
Confidence 668999999999999999977654
|
|
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-18 Score=160.90 Aligned_cols=158 Identities=14% Similarity=0.121 Sum_probs=107.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+|+|.+|||||||++++++.... ..... ++.+.........+ ..+.+|||||+. ++.....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYP--TIENTFSKIIRYKGQDYHLEIVDTAGQD----------EYSILPQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCc--chhhhEEEEEEECCEEEEEEEEECCChH----------hhHHHHH
Confidence 47999999999999999999987642 22222 33322233334443 467899999987 3444445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHH-Hhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWL-RKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l-~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|+++..+.+... +...+ +.. ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA-AFLESSAR 146 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCC-eEEEEeCC
Confidence 6788999999999999866554422 22222 222 23679999999999976443333222223334443 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|+.++++++.+.+..
T Consensus 147 ~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 147 ENENVEEAFELLIEEIEK 164 (180)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=162.30 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=104.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++.+.... ..... +..+.....+.+.+ ..+.+|||||+. ++.....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVP--TVFENYVADIEVDGKQVELALWDTAGQE----------DYDRLRP 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCC--ccccceEEEEEECCEEEEEEEEeCCCch----------hhhhccc
Confidence 57999999999999999999987642 11221 22233233444444 468999999987 3333334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|+++..+..+.. +...++....+.|+++|+||+|+..... .............
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 5678999999999999765554421 3333444345789999999999865321 1112223333344
Q ss_pred CCCCcEEeecCCCCChHHHHHHhcc
Q 007334 265 GFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
+..+++++||++|.|++++++.|.+
T Consensus 148 ~~~~~~~~Sa~~~~~v~~lf~~l~~ 172 (175)
T cd01870 148 GAFGYMECSAKTKEGVREVFEMATR 172 (175)
T ss_pred CCcEEEEeccccCcCHHHHHHHHHH
Confidence 5447899999999999999999874
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=159.42 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=96.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee-ecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+|+|++..... ..+..+.+... ..+.+++ ..+.+|||||..... .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKV--KTLTVDGKKVKLAIWDTAGQERFR----------TLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEE--EEEEECCEEEEEEEEECCCchhhh----------hhhHH
Confidence 489999999999999999999764322 33344443332 2334444 467899999964331 11235
Q ss_pred HHhhccEEEEEeccchhh-------------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++.+|++++|+|+++.. . ...+.|+++|+||+|+.......+.... +.+ ..+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~--------~~~----~~~ 136 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLK--------FAR----KHN 136 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH--------HHH----HcC
Confidence 667899999999998750 0 1246899999999999743222111111 111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++++||++|.|++++++.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 137 MLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CEEEEEecCCCCCHHHHHHHHHHh
Confidence 789999999999999999988753
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-18 Score=156.91 Aligned_cols=154 Identities=27% Similarity=0.382 Sum_probs=110.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+++|.+|+|||||+|+|++.......+.++++++.....+...+..+.+|||||+....... ...........+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHHHHHHHHHHH
Confidence 368999999999999999999998767777788888887776666677889999999976542111 111122345667
Q ss_pred hhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 MRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
..+|++++|+|++++ .....+.|+++|+||+|+..... ...... ..+. ......+++++|
T Consensus 81 ~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~---~~~~~~----~~~~---~~~~~~~~~~~s 150 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKE---DLLPLL----EKLK---ELGPFAEIFPIS 150 (168)
T ss_pred HhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHH---HHHHHH----HHHH---hccCCCceEEEE
Confidence 889999999999875 12234689999999999974311 111111 1111 112246899999
Q ss_pred cCCCCCHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVID 489 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~ 489 (607)
|+++.|++++++.|.+
T Consensus 151 ~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 151 ALKGENVDELLEEIVK 166 (168)
T ss_pred eccCCChHHHHHHHHh
Confidence 9999999999988865
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-18 Score=162.92 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=100.5
Q ss_pred EEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh
Q 007334 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA 202 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 202 (607)
|+++|.+|||||||++++++.... .... .|.......+...+.++.+|||||.. ++...+..+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~---pt~g~~~~~i~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~ 66 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVV---PTTGFNSVAIPTQDAIMELLEIGGSQ----------NLRKYWKRYLS 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--cccc---ccCCcceEEEeeCCeEEEEEECCCCc----------chhHHHHHHHh
Confidence 799999999999999999986542 1111 11112223455678899999999987 44555667899
Q ss_pred ccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHH----HHHHHHhcCCCCcEEeecC
Q 007334 203 KTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAG----AAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~----~~~~~~~~~~~~~i~iSA~ 275 (607)
.+|++++|+|++++.+... ...|+.+. .+++|+++|+||+|+.......... ........++ .++++||+
T Consensus 67 ~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~ 143 (164)
T cd04162 67 GSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRW-ILQGTSLD 143 (164)
T ss_pred hCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCce-EEEEeeec
Confidence 9999999999988654433 22233222 3579999999999987654321100 0111122233 56888888
Q ss_pred C------CCChHHHHHHhcc
Q 007334 276 T------GLGMTELYEALRP 289 (607)
Q Consensus 276 ~------g~gi~eL~~~i~~ 289 (607)
+ ++|++++|+.+..
T Consensus 144 ~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 144 DDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 8 9999999998753
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=159.52 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=94.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+|+++|.+|||||||+++|++.......+..+.+. ..+.. ....+.+|||||..... .....++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~----------~~~~~~~~ 66 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMR----------TVWKCYLE 66 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce----EEEEeCCceEEEEEECCCCHhHH----------HHHHHHhc
Confidence 58999999999999999999876443333333222 22333 34588999999964321 11235677
Q ss_pred hccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHH-hhCCCCCCCC
Q 007334 405 RAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ-TVIPQVTGIP 468 (607)
Q Consensus 405 ~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 468 (607)
.+|++++|+|+++. .. ...+.|+++|+||+|+....... .+. ..+. +.+....+.+
T Consensus 67 ~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~i~----~~~~~~~~~~~~~~~ 138 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE----EIT----RRFKLKKYCSDRDWY 138 (160)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHH----HHH----HHcCCcccCCCCcEE
Confidence 89999999999875 11 11478999999999986532211 111 1111 1122223457
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|.|++++|+.|.+
T Consensus 139 ~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 139 VQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEecccccCCChHHHHHHHhc
Confidence 999999999999999998753
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=159.46 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=96.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|.+|||||||+++|.+... ....| |.......+++++..+.+|||||..+.. .....+++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~~~~--T~~~~~~~~~~~~~~i~l~Dt~G~~~~~----------~~~~~~~~~ 66 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQPIP--TIGFNVETVEYKNLKFTIWDVGGKHKLR----------PLWKHYYLN 66 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CCcCC--cCceeEEEEEECCEEEEEEECCCChhcc----------hHHHHHhcc
Confidence 589999999999999999997632 22233 3322233567788899999999964331 123456788
Q ss_pred ccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC--CCCCCC
Q 007334 406 AHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP--QVTGIP 468 (607)
Q Consensus 406 ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 468 (607)
+|++++|+|+++. ... ..+.|+++|+||+|+.+..... .+. +...... .....+
T Consensus 67 ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~~~-----~~~~~~~~~~~~~~~ 137 (169)
T cd04158 67 TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVE----EMT-----ELLSLHKLCCGRSWY 137 (169)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHH----HHH-----HHhCCccccCCCcEE
Confidence 9999999999875 111 1347999999999996432211 111 0001000 011236
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|+++.+.+
T Consensus 138 ~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 138 IQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred EEeCcCCCCCCHHHHHHHHHHHH
Confidence 88999999999999999987654
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=161.17 Aligned_cols=145 Identities=23% Similarity=0.242 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.||||||||++++++.. ....+..++.+.....+.+++. .+.+|||||+.++. .....+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 69 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV--FIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT----------AMRELY 69 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccch----------hhhHHH
Confidence 689999999999999999999664 2333444554554455555554 66799999975442 122345
Q ss_pred HhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++. .. ...++|+++++||+|+........ +.. ..+.+. ...+
T Consensus 70 ~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~-----~~~~~~---~~~~ 139 (168)
T cd04177 70 IKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR--EDG-----VSLSQQ---WGNV 139 (168)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCH--HHH-----HHHHHH---cCCc
Confidence 6789999999999875 01 124789999999999975432111 100 111111 1136
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+++...+
T Consensus 140 ~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 140 PFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999987643
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=157.28 Aligned_cols=144 Identities=23% Similarity=0.275 Sum_probs=101.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. .+..+.+++.+........++. .+.+|||||..+.. .....+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~ 68 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA----------AIRDNY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh----------HHHHHH
Confidence 489999999999999999999653 3345566666655555556554 67899999964331 123357
Q ss_pred HhhccEEEEEeccchh-----------hH--H--hcCCcEEEEEeCccCCCCcC-chHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RA--V--EEGRGLVVIVNKMDLLSGRQ-NSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~--~--~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++.+|++++|+|+++. .. . ..++|+++|+||+|+..... ....... ..+. .+
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~--------~~~~----~~ 136 (164)
T cd04139 69 HRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN--------LARQ----WG 136 (164)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH--------HHHH----hC
Confidence 7789999999998764 11 1 24799999999999976321 1111111 1111 24
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++|+.+.+.+.
T Consensus 137 ~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 137 VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999876553
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=164.80 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++....... .|.....+.+.+++..+.+|||||+. ++...+..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~------~T~~~~~~~i~~~~~~~~l~D~~G~~----------~~~~~~~~ 82 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHV------PTLHPTSEELTIGNIKFKTFDLGGHE----------QARRLWKD 82 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccC------CccCcceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 468999999999999999999987642211 23333445666778899999999987 44455667
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc------------
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLML------------ 264 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~------------ 264 (607)
++..+|++++|+|+++..+... ..+...++.. ..+.|+++|+||+|+... .........+...
T Consensus 83 ~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T cd00879 83 YFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--VSEEELRQALGLYGTTTGKGVSLKV 160 (190)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC--cCHHHHHHHhCcccccccccccccc
Confidence 8899999999999987644332 1222333211 246899999999998642 2222222222110
Q ss_pred --CC-CCcEEeecCCCCChHHHHHHhccc
Q 007334 265 --GF-GDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 265 --~~-~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
.. .+++++||++|+|+++++++|.+.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11 146999999999999999998754
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=164.33 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=98.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceee-eEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD-SVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~-~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.. ....++.+|... .....+..++.. +.+|||||..+.. .. ...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~-~~~ 69 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE---------AM-SRI 69 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh---------hh-hHh
Confidence 489999999999999999999764 333344444433 233456666654 5599999964331 11 124
Q ss_pred HHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCc-hHH-HHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQN-SAL-YKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++.. ....+.|+++|+||+|+.+.... ... .+.+ ..+. ...+
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~-----~~~~----~~~~ 140 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDV-----QDFA----DEIK 140 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHH-----HHHH----HHcC
Confidence 566899999999998751 01236899999999998653211 000 0111 0111 1225
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++|+.+.+.+.
T Consensus 141 ~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 141 AQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987664
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=158.48 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=102.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.|+++|.+|||||||+|+|++.. ......+++|.+.....+..+ +..+.+|||||+... ... ...+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~---------~~~-~~~~ 70 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF---------TNM-RARG 70 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH---------HHH-HHHH
Confidence 48999999999999999999764 334455677777655555554 678999999996432 111 2345
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC-CCCCCCCEEE
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI-PQVTGIPVVF 471 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 471 (607)
+..+|++++|+|++++ .....++|+++|+||+|+..... ..... .+........ ......++++
T Consensus 71 ~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T cd01887 71 ASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP-ERVKN----ELSELGLQGEDEWGGDVQIVP 145 (168)
T ss_pred HhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH-HHHHH----HHHHhhccccccccCcCcEEE
Confidence 6789999999999863 22346899999999999875321 11111 1111000000 1122468999
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~~~~ 491 (607)
+||++|.|+.++++.+.+..
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 146 TSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred eecccCCCHHHHHHHHHHhh
Confidence 99999999999999887754
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-18 Score=164.94 Aligned_cols=156 Identities=8% Similarity=0.101 Sum_probs=109.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|++||.+|||||||++++++..+. ..... +..+.....+..++ ..+.||||+|++ .+.....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~--~~y~p--Ti~~~~~~~~~~~~~~v~L~iwDt~G~e----------~~~~l~~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP--GSYVP--TVFENYTASFEIDKRRIELNMWDTSGSS----------YYDNVRP 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CccCC--ccccceEEEEEECCEEEEEEEEeCCCcH----------HHHHHhH
Confidence 37999999999999999999987642 22211 22222222333433 568899999997 4555566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++|+|+|++++.+.... .+...++...++.|+|+|+||+|+.... .+..++....+...
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~ 147 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQV 147 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHc
Confidence 788999999999999998766653 2333344445689999999999986531 13334444555566
Q ss_pred CCCCcEEeecCCCCC-hHHHHHHhccc
Q 007334 265 GFGDPIAISAETGLG-MTELYEALRPS 290 (607)
Q Consensus 265 ~~~~~i~iSA~~g~g-i~eL~~~i~~~ 290 (607)
+...++++||+++.+ ++++|+.....
T Consensus 148 ~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 148 GAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred CCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 644789999999985 99999987654
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=170.86 Aligned_cols=152 Identities=24% Similarity=0.304 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCc
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 269 (607)
++...+..+++++|.+++|+|++++. +... +.+|+... ..++|+++|+||+|+....... .+....+...++ ++
T Consensus 25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~--l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~-~~~~~~~~~~g~-~v 100 (245)
T TIGR00157 25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQ--LDRFLVVAEAQNIEPIIVLNKIDLLDDEDME-KEQLDIYRNIGY-QV 100 (245)
T ss_pred ccceEECcccccCCEEEEEEECCCCCCCHHH--HHHHHHHHHHCCCCEEEEEECcccCCCHHHH-HHHHHHHHHCCC-eE
Confidence 34444456789999999999999766 4443 33444322 2478999999999997543221 123334445676 78
Q ss_pred EEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc
Q 007334 270 IAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 349 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~ 349 (607)
+++||++|.|+++|++.+.. ..++++|.+|||||||+|+|++...
T Consensus 101 ~~~SAktg~gi~eLf~~l~~-----------------------------------~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 101 LMTSSKNQDGLKELIEALQN-----------------------------------RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred EEEecCCchhHHHHHhhhcC-----------------------------------CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 99999999999999987642 1478999999999999999998766
Q ss_pred eeecCCCC-------ceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 350 VLVGPEAG-------LTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 350 ~~~~~~~g-------tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..+++.++ ||++.....+ .+ ..|+||||+....
T Consensus 146 ~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~ 185 (245)
T TIGR00157 146 QQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFG 185 (245)
T ss_pred ccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccC
Confidence 66555543 7777655444 32 3799999997763
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=160.22 Aligned_cols=145 Identities=20% Similarity=0.195 Sum_probs=101.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..+|+++|.+|||||||++++++.. ......++++.+.....+.+++. .+.+|||||+.... .....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~ 75 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR----------SITQS 75 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------HHHHH
Confidence 3799999999999999999998653 22333445555666666777774 46789999964321 12245
Q ss_pred HHhhccEEEEEeccchh-------h-------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------R-------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------~-------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++. . ....+.|+++|+||+|+.+..+.... .. ..+.+ ....
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~---~~----~~~~~----~~~~ 144 (169)
T cd04114 76 YYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQ---RA----EEFSD----AQDM 144 (169)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHH---HH----HHHHH----HcCC
Confidence 77889999999999865 0 01236899999999998754332111 11 11111 1236
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|+.|.+.
T Consensus 145 ~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 145 YYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHH
Confidence 79999999999999999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=161.56 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=98.5
Q ss_pred EEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
|+++|.+|||||||++++++... ...+..+..+.....+..++. .+.+|||||..+.. .. ...++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~-~~~~~~ 68 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD---------RL-RPLSYP 68 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC--CCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc---------hh-chhhcC
Confidence 58999999999999999997642 233334444444445566665 47799999964331 11 123567
Q ss_pred hccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC-CC
Q 007334 405 RAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG-IP 468 (607)
Q Consensus 405 ~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~ 468 (607)
.+|++|+|+|+++.. ....++|+++|+||+|+.......+.+... ...+..+....++...+ .+
T Consensus 69 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (174)
T smart00174 69 DTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVK 148 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcE
Confidence 899999999998750 012379999999999997532111000000 00111122222222234 48
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|+.+.+.+
T Consensus 149 ~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 149 YLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999988754
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.77 E-value=5e-18 Score=163.93 Aligned_cols=152 Identities=18% Similarity=0.209 Sum_probs=108.2
Q ss_pred ecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc
Q 007334 126 IGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 203 (607)
Q Consensus 126 vG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 203 (607)
||.+|||||||+++++...+. ..... ++..+.....+.+ ....+.||||+|.+ ++...+..+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~--~~~~~-Tig~~~~~~~~~~~~~~~~l~iwDt~G~e----------~~~~l~~~~~~~ 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE--KKYVA-TLGVEVHPLVFHTNRGPIRFNVWDTAGQE----------KFGGLRDGYYIQ 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC--CCCCC-ceeEEEEEEEEEECCEEEEEEEEECCCch----------hhhhhhHHHhcC
Confidence 699999999999999976542 11111 1223333333333 34689999999998 566677789999
Q ss_pred cCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 204 TQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 204 ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
+|++|+|+|++++.+.... .+...+.+...+.|+++|+||+|+.... ... +........++ .++++||++|.||++
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~~-~~~~~~~~~~~-~~~e~SAk~~~~v~~ 144 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK-VKA-KSITFHRKKNL-QYYDISAKSNYNFEK 144 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc-CCH-HHHHHHHHcCC-EEEEEeCCCCCCHHH
Confidence 9999999999998777653 2444444445678999999999986432 222 22334444555 789999999999999
Q ss_pred HHHHhccchHH
Q 007334 283 LYEALRPSVED 293 (607)
Q Consensus 283 L~~~i~~~l~~ 293 (607)
+|++|...+..
T Consensus 145 ~F~~l~~~i~~ 155 (200)
T smart00176 145 PFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHh
Confidence 99999876643
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=162.17 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=100.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|+|||||++++++... ...+.+++.+.....+..++.. +.+|||||..+.... ...+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 68 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL----------RPLS 68 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc----------cccc
Confidence 4899999999999999999997642 3444555555555556666654 568999996544211 1134
Q ss_pred HhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCC-CCC
Q 007334 403 LMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQ-VTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~ 466 (607)
+..+|++++|+|.++.. ....++|+++|+||+|+.+........... ...+..+..+.++. ...
T Consensus 69 ~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 148 (174)
T cd04135 69 YPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGA 148 (174)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 56899999999998761 113579999999999986542211100000 00111111111111 223
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+++++||++|.|++++|+.+++.
T Consensus 149 ~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 149 HCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred CEEEEecCCcCCCHHHHHHHHHHH
Confidence 479999999999999999998765
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-18 Score=161.55 Aligned_cols=147 Identities=22% Similarity=0.296 Sum_probs=94.3
Q ss_pred CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC--------
Q 007334 205 QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET-------- 276 (607)
Q Consensus 205 d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~-------- 276 (607)
|+|++|+|++.+.+..+.++.+.+.-...++|+|+|+||+|+.+... .......+... ...+...|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~--l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKEN--VEKWLKYLRRE-FPTVAFKASTQSQKKNLGQ 77 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHH--HHHHHHHHHhh-CCEEEEEecccccccchhh
Confidence 79999999999888877777777321123689999999999976321 12222223222 21222223221
Q ss_pred -----------------CCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhH
Q 007334 277 -----------------GLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKST 339 (607)
Q Consensus 277 -----------------g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSs 339 (607)
+.|.++|++.+.+... ......+++|+++|.|||||||
T Consensus 78 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-------------------------~~~~~~~~~~~~vG~pnvGKSs 132 (172)
T cd04178 78 KSVKVEAASADLLRSSVCFGADCLLKLLKNYSR-------------------------NKDIKTSITVGVVGFPNVGKSS 132 (172)
T ss_pred cccccchhhhhhhhhccccCHHHHHHHHHHHhh-------------------------ccccccCcEEEEEcCCCCCHHH
Confidence 1122222221111000 0011235799999999999999
Q ss_pred HHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 340 LLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 340 lin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
|+|+|++...+.+++.||+|++.....+ +..+.++||||+
T Consensus 133 lin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 133 LINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred HHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 9999999888899999999998665443 356899999995
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=168.31 Aligned_cols=145 Identities=18% Similarity=0.168 Sum_probs=99.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
..+||+++|.+|||||||+++++.... ....++.|++.. ...+..+ ...+.||||||..++. ...
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~ 79 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFG----------GLR 79 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE--EEEEEECCeEEEEEEEECCCchhhh----------hhh
Confidence 358999999999999999999875532 123333343333 3334333 3578899999965431 112
Q ss_pred HHHHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 400 RKNLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
..+++.+|++|+|+|.++.. ....+.|+++|+||+|+.......+ . + .+. ...+
T Consensus 80 ~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~---~----~--~~~----~~~~ 146 (219)
T PLN03071 80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---Q----V--TFH----RKKN 146 (219)
T ss_pred HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHH---H----H--HHH----HhcC
Confidence 34677899999999999861 1125789999999999864321111 1 1 111 1235
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|.++.+.+.
T Consensus 147 ~~~~e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 147 LQYYEISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999987654
|
|
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=157.36 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=102.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||++++++...... . .|.......+.+.+..+.+|||||+. .+......++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~--~----~t~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 64 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT--I----PTIGFNVETVEYKNVSFTVWDVGGQD----------KIRPLWKHYY 64 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC--C----CCcCcceEEEEECCEEEEEEECCCCh----------hhHHHHHHHh
Confidence 489999999999999999998863211 1 22223334455678899999999987 3444556778
Q ss_pred hccCEEEEEEecCCCCCHhHH-H-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh----cCCCCcEEeec
Q 007334 202 AKTQFAIFMIDVRSGLHPLDL-E-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGFGDPIAISA 274 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~-~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~----~~~~~~i~iSA 274 (607)
..+|++++|+|++++.+.... . +...+... ..+.|+++|+||+|+..... ..+....... ....+++++||
T Consensus 65 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 65 ENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS--VSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC--HHHHHHhhChhhccCCcEEEEEeeC
Confidence 999999999999986544431 1 22222221 24789999999999876431 1222222111 11225799999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|++++++.|..
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999998864
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-18 Score=159.37 Aligned_cols=147 Identities=24% Similarity=0.229 Sum_probs=98.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.+|||||||++++++.. +.....|.+..+.....+.+++. .+.||||||..+. .. ....++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~-~~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF---------KC-IASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH---------Hh-hHHHHh
Confidence 79999999999999999999763 32233344445555455666654 6789999996432 11 224567
Q ss_pred hhccEEEEEeccchh-----------hHHhc----CCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAVEE----GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+.+|++++|+|+++. ..... ..|+++|+||+|+.+..... ..+... ..+.+ ..+.+
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~-~~~~~~----~~~~~----~~~~~ 141 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYA-LMEQDA----IKLAA----EMQAE 141 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccccc-ccHHHH----HHHHH----HcCCe
Confidence 899999999999874 11111 25689999999986542211 001000 01111 12468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 142 ~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 142 YWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988764
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-18 Score=162.15 Aligned_cols=151 Identities=26% Similarity=0.347 Sum_probs=106.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeec---------------CCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVG---------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~---------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 390 (607)
+|+++|.+|+|||||+|+|++....... ...++|.+.....+.+.+..+.+|||||+.+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 4899999999999999999976543211 234567676666677788899999999964331
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
.....++..+|++++|+|++++ .....++|+++|+||+|+..........+.+ .+.+...
T Consensus 77 ------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~----~~~~~~~ 146 (189)
T cd00881 77 ------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREI----KELLGLI 146 (189)
T ss_pred ------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHH----HHHHccc
Confidence 2344667789999999999864 1223589999999999998643222222222 1222111
Q ss_pred ---------CCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 461 ---------IPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 461 ---------~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.......+++++||++|.|++++++.+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 112346799999999999999999888764
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-18 Score=146.65 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=117.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+++|++||..|||||+|+.+++..-+ ..-.+++...|.....++.+| .++++|||+|++ ++.+.+
T Consensus 7 lfkivlvgnagvgktclvrrftqglf---ppgqgatigvdfmiktvev~gekiklqiwdtagqe----------rfrsit 73 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLF---PPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE----------RFRSIT 73 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCC---CCCCCceeeeeEEEEEEEECCeEEEEEEeeccchH----------HHHHHH
Confidence 68999999999999999999997643 112234455677777777655 579999999999 899999
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..|++.|+.+++|+|++...++.- +-+||++. ....-.|+|+||+|+.+.+++... .-.++.....--++++|
T Consensus 74 qsyyrsahalilvydiscqpsfdc--lpewlreie~yan~kvlkilvgnk~d~~drrevp~q-igeefs~~qdmyflets 150 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDC--LPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQ-IGEEFSEAQDMYFLETS 150 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhh--hHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHH-HHHHHHHhhhhhhhhhc
Confidence 999999999999999998777654 34555543 223445899999999887654332 22233333322458999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|+...+++.||..+.-.+-.
T Consensus 151 akea~nve~lf~~~a~rli~ 170 (213)
T KOG0095|consen 151 AKEADNVEKLFLDLACRLIS 170 (213)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 99999999999888765543
|
|
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-18 Score=162.89 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. ....+++|+.+.....+..++. .+.+|||||..+... .. ..+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~-~~~ 68 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK---------LR-PLC 68 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc---------cc-ccc
Confidence 489999999999999999998653 3445666777766666666664 667899999744321 11 135
Q ss_pred HhhccEEEEEeccchhh----H----------HhcCCcEEEEEeCccCCCCcCchHHHH-HHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----A----------VEEGRGLVVIVNKMDLLSGRQNSALYK-RVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----~----------~~~~~p~ivv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++|+|+|+++.. . ...++|+++|+||+|+.........+. .-.+.+..+....++...+.
T Consensus 69 ~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 148 (173)
T cd04130 69 YPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGA 148 (173)
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCC
Confidence 67899999999998751 0 113689999999999975421000000 00011111112222222344
Q ss_pred -CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 -PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 -~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+.++-
T Consensus 149 ~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 149 CEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHh
Confidence 8999999999999999988753
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-18 Score=176.42 Aligned_cols=206 Identities=20% Similarity=0.268 Sum_probs=132.8
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH----HHHHhcCCC
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA----AESLMLGFG 267 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~----~~~~~~~~~ 267 (607)
++......+...++++++|+|+.+.......++.+.+ .++|+++|+||+|+.+.... .+... ..+...++.
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~-~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVN-LSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCC-HHHHHHHHHHHHHHcCCC
Confidence 4555666677889999999999875544333343333 36799999999999864321 12211 234455653
Q ss_pred --CcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhh
Q 007334 268 --DPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 268 --~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~ 345 (607)
.++.+||++|.|+++|++.|.+... ..+|++||.+|||||||+|+|+
T Consensus 127 ~~~i~~vSAk~g~gv~eL~~~l~~~~~-------------------------------~~~v~~vG~~nvGKStliN~l~ 175 (360)
T TIGR03597 127 PVDIILVSAKKGNGIDELLDKIKKARN-------------------------------KKDVYVVGVTNVGKSSLINKLL 175 (360)
T ss_pred cCcEEEecCCCCCCHHHHHHHHHHHhC-------------------------------CCeEEEECCCCCCHHHHHHHHH
Confidence 5799999999999999998854210 1479999999999999999999
Q ss_pred cCC-----ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH---hhccEEEEEeccch
Q 007334 346 QED-----RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL---MRAHVVALVLDAEE 417 (607)
Q Consensus 346 ~~~-----~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i---~~ad~~llViD~~~ 417 (607)
+.. ...+++.||||++..... . +..+.|+||||+...... ...+. ......+ .......+.+|...
T Consensus 176 ~~~~~~~~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~~~--~~~l~-~~~l~~~~~~~~i~~~~~~l~~~q 249 (360)
T TIGR03597 176 KQNNGDKDVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSHQM--AHYLD-KKDLKYITPKKEIKPKTYQLNPNQ 249 (360)
T ss_pred hhccCCcceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChhHh--hhhcC-HHHHhhcCCCCccCceEEEeCCCC
Confidence 753 357899999999976543 3 234679999998754210 00111 1111111 12455666666554
Q ss_pred h---------h-HHhcCCcEEEEEeCccCCCC
Q 007334 418 V---------R-AVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 418 ~---------~-~~~~~~p~ivv~NK~Dl~~~ 439 (607)
. . .......+.+.++|.+....
T Consensus 250 ~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 250 TLFLGGLARFDYLKGEKTSFTFYVSNELNIHR 281 (360)
T ss_pred EEEEceEEEEEEecCCceEEEEEccCCceeEe
Confidence 3 1 11134456777777666544
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=177.77 Aligned_cols=147 Identities=24% Similarity=0.360 Sum_probs=107.7
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
...+.++|.+++|+|+.++.. ....+.+||... ..++|+++|+||+|+..... .......+...|+ +++++||++
T Consensus 84 R~~~aNvD~vLlV~d~~~p~~-~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~-~v~~iSA~t 159 (352)
T PRK12289 84 RPPVANADQILLVFALAEPPL-DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGY-QPLFISVET 159 (352)
T ss_pred chhhhcCCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHH--HHHHHHHHHhcCC-eEEEEEcCC
Confidence 345789999999999987542 222334444332 24789999999999975321 1222334456777 789999999
Q ss_pred CCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCC
Q 007334 277 GLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 356 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~ 356 (607)
|.|+++|++.|.. ..++++|.||||||||+|+|++.....+++.+
T Consensus 160 g~GI~eL~~~L~~-----------------------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs 204 (352)
T PRK12289 160 GIGLEALLEQLRN-----------------------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVS 204 (352)
T ss_pred CCCHHHHhhhhcc-----------------------------------ceEEEEeCCCCCHHHHHHHHcCcccccccccc
Confidence 9999999887642 13799999999999999999998888888888
Q ss_pred C-------ceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 357 G-------LTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 357 g-------tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
+ ||++..... ..+. ..|+||||+..+.
T Consensus 205 ~~~~rGrHTT~~~~l~~--l~~g-~~liDTPG~~~~~ 238 (352)
T PRK12289 205 GKLGRGRHTTRHVELFE--LPNG-GLLADTPGFNQPD 238 (352)
T ss_pred CCCCCCCCcCceeEEEE--CCCC-cEEEeCCCccccc
Confidence 8 888764333 3221 2799999997764
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-18 Score=189.06 Aligned_cols=146 Identities=27% Similarity=0.349 Sum_probs=109.0
Q ss_pred cCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEE
Q 007334 331 GRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVA 410 (607)
Q Consensus 331 G~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~l 410 (607)
|.||||||||+|+|+|.+ ..++++||+|++...+.+++++.++.+|||||+.+.......+.. .+.......+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v--~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEV--ARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHH--HHHHHhhcCCCEEE
Confidence 899999999999999875 678999999999999899999999999999998765321111111 11111223699999
Q ss_pred EEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 411 LVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 411 lViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
+|+|+++. +..+.++|+++|+||+|+.+........+. +.+ ..++|++++||++|.|+++
T Consensus 78 ~VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~--------L~~----~lg~pvv~tSA~tg~Gi~e 145 (591)
T TIGR00437 78 NVVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEK--------LEE----RLGVPVVPTSATEGRGIER 145 (591)
T ss_pred EEecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHH--------HHH----HcCCCEEEEECCCCCCHHH
Confidence 99999875 234568999999999998754332211111 111 2367999999999999999
Q ss_pred HHHHHHHHH
Q 007334 483 VMHQVIDTY 491 (607)
Q Consensus 483 l~~~i~~~~ 491 (607)
+++.+.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998753
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-18 Score=168.57 Aligned_cols=145 Identities=17% Similarity=0.211 Sum_probs=100.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++... ...+.+|+.+.....+.+++. .+.||||||..++ ..++ ..+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f--~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~---------~~~~-~~~ 68 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPF---------PAMR-RLS 68 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhh---------hHHH-HHH
Confidence 4799999999999999999986532 234555555666666677774 5669999996433 1122 235
Q ss_pred HhhccEEEEEeccchh-----------hHH------------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV------------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~------------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
+..+|++|+|+|+++. ... ..++|+|+|+||+|+....... .+ ++.+
T Consensus 69 ~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~--~~--------ei~~ 138 (247)
T cd04143 69 ILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ--RD--------EVEQ 138 (247)
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC--HH--------HHHH
Confidence 6789999999999875 111 1368999999999997532211 11 1111
Q ss_pred hCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 460 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+......+++++||++|.|++++|+.|....
T Consensus 139 ~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 139 LVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11112256899999999999999999998754
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=9e-18 Score=190.85 Aligned_cols=160 Identities=27% Similarity=0.287 Sum_probs=118.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchh--HHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGS--ILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~--~~~~~~~~~~ 198 (607)
.+|+++|+||||||||+|+|++.+. .+++.+| +|.+...+.+.+++.++.+|||||+.+...... ...+. ...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pG--vTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~--i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAG--VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ--IAC 78 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCC--ceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHH--HHH
Confidence 5799999999999999999999765 5788888 999999999988999999999999985432100 11111 122
Q ss_pred HH--hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NV--LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~--~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+ ...+|++++|+|+++... +..+...+.+. ++|+++|+||+|+.+.+... .........+|. +++++||.+
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~-pVvpiSA~~ 152 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLER--NLYLTLQLLEL--GIPCIVALNMLDIAEKQNIR-IDIDALSARLGC-PVIPLVSTR 152 (772)
T ss_pred HHHhccCCCEEEEEecCCcchh--hHHHHHHHHHc--CCCEEEEEEchhhhhccCcH-HHHHHHHHHhCC-CEEEEEeec
Confidence 23 358999999999987432 33344555555 78999999999987543322 222233455677 889999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|+|++++.+.+.+..
T Consensus 153 g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 153 GRGIEALKLAIDRHQ 167 (772)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999987643
|
|
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-18 Score=162.70 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=106.3
Q ss_pred CEEEEecCCCCchhHHHH-Hhhcccee---eeccCCCCceee--eeEEE----------EeeeCCeeEEEecCCCCcccc
Q 007334 121 PTVMIIGRPNVGKSALFN-RLIRRREA---LVYNTPDDHVTR--DIREG----------LAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n-~L~~~~~~---~v~~~~~~~~T~--~~~~~----------~~~~~~~~~~liDTpG~~~~~ 184 (607)
.+|+++|.+|||||||++ ++.+..+. ....... |.. +.... .++.....+.||||+|+..
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~p--Ti~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~-- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVP--TVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD-- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCC--ceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--
Confidence 589999999999999996 55543221 1111111 211 11111 1222346899999999972
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCccc--------------
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLH-------------- 248 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~-------------- 248 (607)
. ....++..||++++|+|++++.+.... .+...++...++.|+++|+||+|+..
T Consensus 79 --------~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~ 148 (195)
T cd01873 79 --------K--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLA 148 (195)
T ss_pred --------h--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccc
Confidence 1 123478999999999999998777764 24455555455789999999999864
Q ss_pred -----CCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 249 -----NGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 249 -----~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
.+.+..++....+...+. .++++||++|.|++++|+.+.+
T Consensus 149 ~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 149 RPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHH
Confidence 234455566666777787 7899999999999999998764
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-18 Score=160.24 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=97.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC-cchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG-PASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~ 400 (607)
...+|+++|.+|+|||||+|+|++.. ...+++.+|+|.+..... .+ ..+.+|||||+........ .+.+... ..
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~liDtpG~~~~~~~~~~~~~~~~~-~~ 92 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--VN-DGFRLVDLPGYGYAKVSKEEKEKWQKL-IE 92 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--eC-CcEEEEeCCCCccccCChhHHHHHHHH-HH
Confidence 45799999999999999999999875 456778899988765433 23 3799999999754321110 1111111 11
Q ss_pred HHHh---hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLM---RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~---~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.+++ .+|++++|+|++.+ .....++|+++|+||+|+....+.....+. +.+.+... ....
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~----i~~~l~~~---~~~~ 165 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKK----IKKALKKD---ADDP 165 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHH----HHHHHhhc---cCCC
Confidence 2333 46899999999874 122357999999999999754322222222 22222221 1235
Q ss_pred CEEEcccCCCCCHH
Q 007334 468 PVVFTSALEGRGRI 481 (607)
Q Consensus 468 ~~v~iSA~~g~gv~ 481 (607)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 89999999999973
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.4e-18 Score=160.06 Aligned_cols=150 Identities=14% Similarity=0.181 Sum_probs=98.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. +.....|.+..+.....+..++. .+.||||+|..+. ..+ ...+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~-f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~---------~~~-~~~~ 69 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE-FDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREF---------INM-LPLV 69 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhH---------HHh-hHHH
Confidence 489999999999999999998763 32223344444555556666664 5679999995433 111 2346
Q ss_pred HhhccEEEEEeccchh-----------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.||++++|+|+++. ... ....| |+|+||+|+......... + .+.. ..+.++...+.+
T Consensus 70 ~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~-~----~~~~-~~~~~a~~~~~~ 142 (182)
T cd04128 70 CNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQ-E----EITK-QARKYAKAMKAP 142 (182)
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhh-h----hhHH-HHHHHHHHcCCE
Confidence 7899999999999876 111 12355 789999999642110000 0 0111 111112223578
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999887654
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-18 Score=162.80 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=97.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.+|||||||+++|++.... ..+..|..+.....+..++ ..+.||||||..+... . ...++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~---------l-~~~~~ 69 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR---------L-RSLSY 69 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChhccc---------c-ccccc
Confidence 7999999999999999999976432 2222232222333344455 4678999999644321 1 12356
Q ss_pred hhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCC-CCCCC
Q 007334 404 MRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIP-QVTGI 467 (607)
Q Consensus 404 ~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 467 (607)
..+|++++|+|+++. .....+.|+++|+||+|+.+............ ..+..+....++ ....+
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINAL 149 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 789999999999876 00123789999999999976532111111000 001111111111 12236
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+++.+.+.
T Consensus 150 ~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 150 RYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred EEEEccCCcCCCHHHHHHHHHHHHh
Confidence 8999999999999999999887653
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-18 Score=146.86 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=123.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+++++++|..|.|||+|+.+++..++. +...-++..++....+..++ .+++||||+|++ ++...
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfk---DdssHTiGveFgSrIinVGgK~vKLQIWDTAGQE----------rFRSV 74 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFK---DDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE----------RFRSV 74 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhc---ccccceeeeeecceeeeecCcEEEEEEeecccHH----------HHHHH
Confidence 3689999999999999999999987642 22221234444444555444 579999999999 89999
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+..|++.|.++++|+|++...++.. +..||.+. .+++-+|+++||.|+...+++...+....+....+ .+.++
T Consensus 75 tRsYYRGAAGAlLVYD~Tsrdsfna--LtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~flET 151 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITSRDSFNA--LTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLET 151 (214)
T ss_pred HHHHhccccceEEEEeccchhhHHH--HHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eeeee
Confidence 9999999999999999998877774 66777664 45777899999999999888777666655555555 67899
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|++++|.|-.....+-.
T Consensus 152 Sa~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 152 SALTGENVEEAFLKCARTILN 172 (214)
T ss_pred cccccccHHHHHHHHHHHHHH
Confidence 999999999988776665543
|
|
| >KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-18 Score=148.73 Aligned_cols=147 Identities=22% Similarity=0.251 Sum_probs=111.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.-+||++||..|||||+|+.+++.. .+..+.-..+.+|.....++++|. +++||||+|+.+++ .-+.
T Consensus 6 flfkivlvgnagvgktclvrrftqg-lfppgqgatigvdfmiktvev~gekiklqiwdtagqerfr----------sitq 74 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFR----------SITQ 74 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHH----------HHHH
Confidence 3579999999999999999999954 355555555667777777787776 56799999976553 3456
Q ss_pred HHHhhccEEEEEeccchh-------------hH-HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-------------RA-VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-------------~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.||++|+|+|.+.. +. ....+--|+|+||+|+.+. +.+++++++.++....
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr-----------revp~qigeefs~~qd 143 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR-----------REVPQQIGEEFSEAQD 143 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh-----------hhhhHHHHHHHHHhhh
Confidence 788999999999999863 11 1234456899999999765 3345556666665566
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..++++||+...|++.||..+...+
T Consensus 144 myfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 144 MYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhhhhcccchhhHHHHHHHHHHHH
Confidence 7889999999999999999887543
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.6e-18 Score=148.77 Aligned_cols=116 Identities=28% Similarity=0.426 Sum_probs=93.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|+|.||||||||+|+|++.+.+.+++.++ +|+...+..+.+.+..+.++||||+.......... .........+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~--~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPG--TTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTT--SSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccccc--ceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 58999999999999999999977777888887 88888888888899999999999998543222111 2444566777
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecC
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 243 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 243 (607)
..+|++++|+|++++....+.++.++|+ . ++|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~--~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPITEDDKNILRELK-N--KKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSHHHHHHHHHHHH-T--TSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHh-c--CCCEEEEEcC
Confidence 9999999999988755555667888885 3 7899999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=157.61 Aligned_cols=150 Identities=19% Similarity=0.117 Sum_probs=102.0
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||+|+|++....... .|.......+...+..+.+|||||.. ++......++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~------~t~g~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 64 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVA------PTVGFTPTKLRLDKYEVCIFDLGGGA----------NFRGIWVNYY 64 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcccc------CcccceEEEEEECCEEEEEEECCCcH----------HHHHHHHHHH
Confidence 4899999999999999999976221111 12222234556678899999999987 4556667899
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh----cCC-CCcEE
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGF-GDPIA 271 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~----~~~-~~~i~ 271 (607)
..+|++++|+|+++..+..+ ...|+... ..++|+++|+||+|+................. .+. ..+++
T Consensus 65 ~~a~~ii~V~D~s~~~s~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~ 142 (167)
T cd04161 65 AEAHGLVFVVDSSDDDRVQE--VKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEP 142 (167)
T ss_pred cCCCEEEEEEECCchhHHHH--HHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEE
Confidence 99999999999998655443 22333321 24789999999999876542111111101111 121 14577
Q ss_pred eecCCC------CChHHHHHHhcc
Q 007334 272 ISAETG------LGMTELYEALRP 289 (607)
Q Consensus 272 iSA~~g------~gi~eL~~~i~~ 289 (607)
+||++| .|+++.+++|.+
T Consensus 143 ~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 143 CSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred eEceeCCCCccccCHHHHHHHHhc
Confidence 999998 899999999864
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=159.77 Aligned_cols=147 Identities=16% Similarity=0.088 Sum_probs=108.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccce------eee---------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRRE------ALV---------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~------~~v---------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 185 (607)
.+|+++|++|+|||||+++|++... ... ....+ +|.+.....+..++.++.++||||+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARG--ITINTAHVEYETANRHYAHVDCPGHA---- 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcC--ccEEeeeeEecCCCeEEEEEECcCHH----
Confidence 4799999999999999999986410 000 01234 77777777777788899999999987
Q ss_pred chhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc---HHHHHHHH
Q 007334 186 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS---LAGAAAES 261 (607)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~---~~~~~~~~ 261 (607)
.+...+...+..+|++++|+|+..+...++.+++..+... ++| +|+|+||+|+....... ..+....+
T Consensus 77 ------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l 148 (195)
T cd01884 77 ------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELL 148 (195)
T ss_pred ------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Confidence 5666777888999999999999999888888888888776 666 77999999987422110 11222333
Q ss_pred HhcCC----CCcEEeecCCCCChH
Q 007334 262 LMLGF----GDPIAISAETGLGMT 281 (607)
Q Consensus 262 ~~~~~----~~~i~iSA~~g~gi~ 281 (607)
..+++ .+++++||.+|.++.
T Consensus 149 ~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 149 SKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHhcccccCCeEEEeeCccccCCC
Confidence 44454 368999999999853
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=156.95 Aligned_cols=147 Identities=23% Similarity=0.236 Sum_probs=100.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|++|||||||+|++++.. ......+..+.+.....+.+.+. .+.+|||||..... .....+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~ 69 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ----------SLGVAF 69 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH----------hHHHHH
Confidence 489999999999999999999764 22333333444555555666665 45699999953321 123457
Q ss_pred HhhccEEEEEeccchhhH-----------H-------hcCCcEEEEEeCccCCCCcCc-hHHHHHHHHhcHHHHHhhCCC
Q 007334 403 LMRAHVVALVLDAEEVRA-----------V-------EEGRGLVVIVNKMDLLSGRQN-SALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 403 i~~ad~~llViD~~~~~~-----------~-------~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 463 (607)
++.+|++|+|+|+++... . ..++|+++|+||+|+...... .+....+ ...
T Consensus 70 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----------~~~ 138 (172)
T cd01862 70 YRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQW-----------CQS 138 (172)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHH-----------HHH
Confidence 788999999999986510 0 127899999999999743211 1111111 111
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
....+++++||++|.|++++|+.+.+.+.+
T Consensus 139 ~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 139 NGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 123689999999999999999998876543
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-18 Score=165.99 Aligned_cols=144 Identities=25% Similarity=0.315 Sum_probs=99.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeec------------------------------CCCCceeeeEEEEEEEcCeEEE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVG------------------------------PEAGLTRDSVRVHFEYQGRTVY 375 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~------------------------------~~~gtT~~~~~~~~~~~~~~~~ 375 (607)
+|+++|++|+|||||+++|++....+.. ...|+|++.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999876544331 1278999999889999999999
Q ss_pred EEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCC-cEEEEEeCccCCCCcCchH
Q 007334 376 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGR-GLVVIVNKMDLLSGRQNSA 444 (607)
Q Consensus 376 liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~-p~ivv~NK~Dl~~~~~~~~ 444 (607)
||||||+.++. ..+..++..+|++|+|+|++++ .....+. ++|+|+||+|+.... ..
T Consensus 81 liDTpG~~~~~----------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~--~~ 148 (208)
T cd04166 81 IADTPGHEQYT----------RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS--EE 148 (208)
T ss_pred EEECCcHHHHH----------HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC--HH
Confidence 99999964331 1234567889999999999875 1112343 578899999987532 12
Q ss_pred HHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.++.+...+.. +.+.+. ....+++++||++|.|+.+.
T Consensus 149 ~~~~i~~~~~~-~~~~~~-~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 149 VFEEIVADYLA-FAAKLG-IEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHH-HHHHcC-CCCceEEEEeCCCCCCCccC
Confidence 22222222221 112222 12357999999999998754
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-18 Score=163.92 Aligned_cols=146 Identities=20% Similarity=0.150 Sum_probs=100.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++... .....+.++.+.....+.+++. .+.+|||||.... . .....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~-~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~---------~-~~~~~ 74 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF---------R-SITRS 74 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHH---------H-HHHHH
Confidence 47999999999999999999997643 2233344444544445566554 5679999995332 1 12345
Q ss_pred HHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++|+|+|+++.. . .....|+++|+||+|+.+..... .+..+.+....++
T Consensus 75 ~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~-----------~~~~~~~~~~~~~ 143 (210)
T PLN03108 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS-----------TEEGEQFAKEHGL 143 (210)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC-----------HHHHHHHHHHcCC
Confidence 677899999999998750 1 11368999999999997643211 0011111112357
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+++.+.+
T Consensus 144 ~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 144 IFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999887654
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=183.39 Aligned_cols=152 Identities=23% Similarity=0.298 Sum_probs=115.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe-eEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.|+|+++|++|+|||||+++|.+.+.+. ...++ +|.+.....+.+.+. .+.+|||||+. .+..+..
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~G--IT~~ig~~~v~~~~~~~i~~iDTPGhe----------~F~~~r~ 153 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGG--ITQHIGAYHVENEDGKMITFLDTPGHE----------AFTSMRA 153 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCc--eeecceEEEEEECCCcEEEEEECCCCc----------chhhHHH
Confidence 5899999999999999999999876542 23345 788877767776544 89999999998 4445555
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC--------CCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF--------GDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~--------~~~i 270 (607)
..+..+|++++|+|++++...+..+.+..++.. +.|+++++||+|+..... +.....+...++ .+++
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~--~vPiIVviNKiDl~~~~~---e~v~~~L~~~g~~~~~~~~~~~~v 228 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA--NVPIIVAINKIDKPEANP---DRVKQELSEYGLVPEDWGGDTIFV 228 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc--CCCEEEEEECcccccCCH---HHHHHHHHHhhhhHHhcCCCceEE
Confidence 678899999999999998888877766666554 789999999999865321 222222222221 2579
Q ss_pred EeecCCCCChHHHHHHhcc
Q 007334 271 AISAETGLGMTELYEALRP 289 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~ 289 (607)
++||++|+|+++|++.|..
T Consensus 229 ~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECCCCCChHHHHHhhhh
Confidence 9999999999999999863
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=161.88 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=100.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.+|||||||+++|++... ...+..++.+.....+.+.+ ..+.||||||..+.. .+ ...++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~-~~~~~ 68 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP---------AM-RKLSI 68 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh---------HH-HHHHh
Confidence 689999999999999999997642 23344555455555666777 467899999964431 11 22467
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++|+|+|+++. ... ..++|+|+|+||+|+........ .+.. .+......+.+
T Consensus 69 ~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~-~~~~--------~~~~~~~~~~~ 139 (198)
T cd04147 69 QNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP-AKDA--------LSTVELDWNCG 139 (198)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc-HHHH--------HHHHHhhcCCc
Confidence 789999999999875 011 14799999999999975311110 0000 01111112468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 140 ~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 140 FVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EEEecCCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999987653
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-18 Score=164.76 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=101.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||++||.+|||||||+++|++.. + ...+..|..+.+...+.+++. .+.||||+|.... ...+ ..+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f-~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~---------~~l~-~~~ 69 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-Y-PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY---------DNVR-PLA 69 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-C-CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHH---------HHHh-HHh
Confidence 589999999999999999999753 2 233433444444445666665 5668999995332 2122 246
Q ss_pred HhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC-
Q 007334 403 LMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG- 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 466 (607)
++.+|++|+|+|.++.. ....+.|+|||+||+||.+........... ...+..+.++.++...+
T Consensus 70 ~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~ 149 (222)
T cd04173 70 YPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC
Confidence 78999999999999860 112478999999999996532110000000 00122233333343345
Q ss_pred CCEEEcccCCCCC-HHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRG-RIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~g-v~~l~~~i~~~~ 491 (607)
++++++||+++.| |+++|..++.+.
T Consensus 150 ~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 150 VSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred CEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 4899999999985 999999887753
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=159.17 Aligned_cols=146 Identities=26% Similarity=0.378 Sum_probs=99.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeec---------------CCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVG---------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK 389 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~---------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 389 (607)
.+|+++|.+|||||||+++|++....... ...|+|.+.....+.+++..+.+|||||+.++.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 47999999999999999999963212111 235777777777778888999999999975431
Q ss_pred CcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 390 GPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 390 ~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
.....+++.+|++++|+|+++. .....++|+++|+||+|+.... .....+.+.+.+ ..+..
T Consensus 80 -------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~-~~~~~ 150 (194)
T cd01891 80 -------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR-PEEVVDEVFDLF-IELGA 150 (194)
T ss_pred -------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHHHHHHHHHH-HHhCC
Confidence 2344678899999999999873 1224689999999999997532 111222222111 01111
Q ss_pred hCCCCCCCCEEEcccCCCCCHHHH
Q 007334 460 VIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
. ....+.+++++||++|.|+.++
T Consensus 151 ~-~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 151 T-EEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred c-cccCccCEEEeehhcccccccc
Confidence 0 1123579999999999998544
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.7e-18 Score=158.72 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=98.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceee-eEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD-SVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~-~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.+||+++|.+|||||||++++++.. +.+..+.+|+.+ .....+.+++ ..+.+|||+|..... ....
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----------~~~~ 72 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAI----------LLND 72 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeEEEEEEEecCCccccc----------ccch
Confidence 5799999999999999999999764 322444444433 3334455666 456799999964331 1123
Q ss_pred HHHhhccEEEEEeccchhh-------HH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC-
Q 007334 401 KNLMRAHVVALVLDAEEVR-------AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI- 467 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-------~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 467 (607)
.+++.||++|+|+|++++. .. ..++|+++|+||+|+.+...... . ...++.+.+ +.
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~--~-----~~~~~~~~~----~~~ 141 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYE--V-----QPDEFCRKL----GLP 141 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccc--c-----CHHHHHHHc----CCC
Confidence 4568899999999998861 11 13689999999999965421100 0 001222221 22
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+.+
T Consensus 142 ~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 142 PPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CCEEEEeccCccHHHHHHHHHHHh
Confidence 468999999999999999988764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=155.57 Aligned_cols=149 Identities=20% Similarity=0.234 Sum_probs=102.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|+|.+|||||||+++|.+........ |.......+...+..+.+|||||.. ++......
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~------t~g~~~~~i~~~~~~~~~~D~~G~~----------~~~~~~~~ 77 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITP------TQGFNIKTVQSDGFKLNVWDIGGQR----------AIRPYWRN 77 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCC------CCCcceEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 5789999999999999999999875432222 2222233455678899999999986 44455566
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------Cc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~ 269 (607)
+++.+|++++|+|+++.....+ ..+...+... ..++|+++++||+|+..... ..... ..++.. ++
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~---~~l~~~~~~~~~~~~ 152 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIA---EALNLHDLRDRTWHI 152 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHH---HHcCCcccCCCeEEE
Confidence 7899999999999987543332 1222222221 23689999999999875422 11111 122221 35
Q ss_pred EEeecCCCCChHHHHHHhcc
Q 007334 270 IAISAETGLGMTELYEALRP 289 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~ 289 (607)
+++||++|+|+++++++|.+
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 79999999999999999864
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-17 Score=150.09 Aligned_cols=153 Identities=24% Similarity=0.301 Sum_probs=106.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|+|||||+|+|++.. ......++ +|.+.....+..++ ..+.+|||||+.. +.....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~ 68 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPG--TTRNYVTTVIEEDGKTYKFNLLDTAGQED----------YRAIRR 68 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCC--ceeeeeEEEEEECCEEEEEEEEECCCccc----------chHHHH
Confidence 589999999999999999999887 44444454 77887776677777 7899999999762 223334
Q ss_pred HHhhccCEEEEEEecCCC-CCHhHH--HHHHHHHhhCC-CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSG-LHPLDL--EVGKWLRKHAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~-~~~~~~--~~~~~l~~~~~-~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.....++.++.++|.... .+..+. .....+..... +.|+++|+||+|+.... ........+...+..+++++||
T Consensus 69 ~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 69 LYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred HHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeec
Confidence 455667777777777655 222221 22222322222 78999999999997643 1222333444455557899999
Q ss_pred CCCCChHHHHHHhc
Q 007334 275 ETGLGMTELYEALR 288 (607)
Q Consensus 275 ~~g~gi~eL~~~i~ 288 (607)
.+|.|+.++++.|.
T Consensus 147 ~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 147 ETGKNIDSAFKIVE 160 (161)
T ss_pred CCCCCHHHHHHHhh
Confidence 99999999999864
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.4e-18 Score=165.43 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=95.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce-eeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT-RDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT-~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.... ...++.+. .+.....+.+++ ..+.+|||||.... . ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-----------~-~~~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW-----------T-EDS 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH-----------H-HhH
Confidence 47999999999999999999865322 12222222 244444455544 56789999996310 0 112
Q ss_pred HHh-hccEEEEEeccchhh-----------HHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 402 NLM-RAHVVALVLDAEEVR-----------AVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 402 ~i~-~ad~~llViD~~~~~-----------~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
++. .+|++++|+|+++.. ... .++|+|+|+||+|+.+...... +..+.++...
T Consensus 68 ~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~-----------~~~~~~a~~~ 136 (221)
T cd04148 68 CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV-----------QEGRACAVVF 136 (221)
T ss_pred HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH-----------HHHHHHHHHc
Confidence 344 799999999999860 111 3689999999999976432111 1111111122
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++++||++|.|++++|+.+.+.+.
T Consensus 137 ~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 137 DCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999987664
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=159.01 Aligned_cols=147 Identities=24% Similarity=0.290 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.||+++|.||||||||++++++.. . +..+.+++.+.....+.+++. .+.+|||||+.+. . .....+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~-~~~~~~ 69 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-F-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEY---------S-ILPQKY 69 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhh---------H-HHHHHH
Confidence 589999999999999999999763 2 333444444433445555554 4679999996432 1 122346
Q ss_pred HhhccEEEEEeccchhh-----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++.. . ...+.|+|+|+||+|+...+.... +.. ..+.+ ..+.
T Consensus 70 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 138 (180)
T cd04137 70 SIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST--EEG-----KELAE----SWGA 138 (180)
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH--HHH-----HHHHH----HcCC
Confidence 66899999999998751 1 123679999999999875322111 011 11111 1246
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
+++++||++|.|+.+++.++.+.+...
T Consensus 139 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 139 AFLESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999998766543
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=149.33 Aligned_cols=149 Identities=23% Similarity=0.190 Sum_probs=112.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++..|+|.|+||||+|+-++... .+.-+.+..+..|.....++++|. +++||||||..++ . ..+-.+
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErF---------r-titsty 77 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-TFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERF---------R-TITSTY 77 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-ccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHH---------H-HHHHHH
Confidence 57889999999999999999844 455555556677888777887775 5679999996444 2 234468
Q ss_pred HhhccEEEEEeccchhh----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 403 LMRAHVVALVLDAEEVR----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+++.|++++|||+++++ .. ....|-|+|+||.|+.+.+ .+..+..+.++...++.+
T Consensus 78 yrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rr-----------vV~t~dAr~~A~~mgie~ 146 (198)
T KOG0079|consen 78 YRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERR-----------VVDTEDARAFALQMGIEL 146 (198)
T ss_pred ccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccce-----------eeehHHHHHHHHhcCchh
Confidence 88999999999999871 11 1357889999999988752 233344445555568899
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
|++|||...|++..|..|.+...+..
T Consensus 147 FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 147 FETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred eehhhhhcccchHHHHHHHHHHHHHH
Confidence 99999999999999999988765544
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=158.97 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=106.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+|+|.+|||||||+++|....... .... +..+.....+.+.+ ..+.+|||+|+.... .....
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----------~~~~~ 68 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE--EYHP--TVFENYVTDCRVDGKPVQLALWDTAGQEEYE----------RLRPL 68 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--ccCC--cccceEEEEEEECCEEEEEEEEECCCChhcc----------ccchh
Confidence 79999999999999999998654321 1111 23333333444444 458899999987321 11223
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC----------CcCcHHHHHHHHHhcCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN----------GTGSLAGAAAESLMLGFG 267 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~----------~~~~~~~~~~~~~~~~~~ 267 (607)
.+..+|++++|+|+++..+..+. .+...++...++.|+++|+||+|+... +....+.........+..
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 56889999999999876655543 244555555567999999999998542 112223333444556655
Q ss_pred CcEEeecCCCCChHHHHHHhccch
Q 007334 268 DPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+++++||++|.|++++++.+.+.+
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=154.27 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=116.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+|+++|.++||||||++++.+..+. ..... +...+.....+...+ ..+.+|||+|.. ++......
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--ENYIP-TIGIDSYSKEVSIDGKPVNLEIWDTSGQE----------RFDSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--SSSET-TSSEEEEEEEEEETTEEEEEEEEEETTSG----------GGHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--ccccc-ccccccccccccccccccccccccccccc----------cccccccc
Confidence 6899999999999999999987642 11111 122455555555544 469999999987 33344456
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhCC-CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHAP-QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~~-~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.+..+|++++|+|.+++.+..... +...+....+ +.|+++|+||+|+...+....++....+..++. +++++||+++
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~ 146 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGV-PYFEVSAKNG 146 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTS-EEEEEBTTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCC-EEEEEECCCC
Confidence 789999999999998876666532 3444444444 689999999999988666666666667777784 8899999999
Q ss_pred CChHHHHHHhccch
Q 007334 278 LGMTELYEALRPSV 291 (607)
Q Consensus 278 ~gi~eL~~~i~~~l 291 (607)
.|+.+++..+.+.+
T Consensus 147 ~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 147 ENVKEIFQELIRKI 160 (162)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999988655
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.6e-18 Score=155.55 Aligned_cols=142 Identities=22% Similarity=0.233 Sum_probs=96.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|++++...... ..+.++.+.....+..+ ...+.+|||||..... .....+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR----------SITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH----------HHHHHH
Confidence 4799999999999999999997753332 33344444444444443 4578899999963321 234567
Q ss_pred HhhccEEEEEeccchh-----------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|+++. .... .++|+++++||+|+....... .+.+.+ +.. ..+.+
T Consensus 70 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~-----~~~----~~~~~ 138 (159)
T cd00154 70 YRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS--TEEAQQ-----FAK----ENGLL 138 (159)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc--HHHHHH-----HHH----HcCCe
Confidence 7889999999999875 1111 358999999999996322111 111111 111 13678
Q ss_pred EEEcccCCCCCHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVI 488 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~ 488 (607)
++++||++|.|++++++.|.
T Consensus 139 ~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 139 FFETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEEEecCCCCCHHHHHHHHh
Confidence 99999999999999998875
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-18 Score=168.42 Aligned_cols=145 Identities=28% Similarity=0.320 Sum_probs=113.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~ 402 (607)
..+|++||.||||||||+|+|++. .+.+.++++||..++.+.++|+|.+++|+|+||+... ....+.. .+....
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt-~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG----~~vlsv 137 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNT-KSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG----RQVLSV 137 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCC-CccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCc----ceeeee
Confidence 368999999999999999999987 4889999999999999999999999999999999877 2222211 223456
Q ss_pred HhhccEEEEEeccchh----------------------------------------------------------------
Q 007334 403 LMRAHVVALVLDAEEV---------------------------------------------------------------- 418 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------------------------------------------------------------- 418 (607)
++.||++++|+|+...
T Consensus 138 ~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~ 217 (365)
T COG1163 138 ARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNAD 217 (365)
T ss_pred eccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccce
Confidence 6789999999999743
Q ss_pred -------------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 419 -------------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 419 -------------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
... ...+|+++|+||+|+...+. ++.+ .+ ...++++||++|.|+++
T Consensus 218 V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~----~~~l--------~~------~~~~v~isa~~~~nld~ 279 (365)
T COG1163 218 VLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE----LERL--------AR------KPNSVPISAKKGINLDE 279 (365)
T ss_pred EEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH----HHHH--------Hh------ccceEEEecccCCCHHH
Confidence 001 12589999999999987421 1221 11 12789999999999999
Q ss_pred HHHHHHHHH
Q 007334 483 VMHQVIDTY 491 (607)
Q Consensus 483 l~~~i~~~~ 491 (607)
|.+.+++.+
T Consensus 280 L~e~i~~~L 288 (365)
T COG1163 280 LKERIWDVL 288 (365)
T ss_pred HHHHHHHhh
Confidence 999888754
|
|
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=154.68 Aligned_cols=144 Identities=21% Similarity=0.228 Sum_probs=96.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|+|++.... ....+.++.+.....+.+.+. .+.+|||||.... . .....+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~-~~~~~~ 69 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY---------H-ALGPIY 69 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCEEEEEEEEECCchHHH---------H-HhhHHH
Confidence 48999999999999999999976432 223333444444445555554 5779999995322 1 112345
Q ss_pred HhhccEEEEEeccchhhH--------------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVRA--------------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~~--------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+..+|++++|+|+++... ...++|+++|+||+|+........ +.+. +..+ ..+.+
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~--~~~~-----~~~~----~~~~~ 138 (162)
T cd04123 70 YRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK--SEAE-----EYAK----SVGAK 138 (162)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH--HHHH-----HHHH----HcCCE
Confidence 678999999999987610 112689999999999975432111 1110 1111 12568
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++++++.+.
T Consensus 139 ~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 139 HFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred EEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.4e-18 Score=153.14 Aligned_cols=133 Identities=22% Similarity=0.225 Sum_probs=86.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|++|||||||+|+|++.... +..|. .+++.+ .+|||||..... .+.+ .....++++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~t~------~~~~~~---~~iDt~G~~~~~----~~~~--~~~~~~~~~ 62 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKKTQ------AVEYND---GAIDTPGEYVEN----RRLY--SALIVTAAD 62 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cccce------eEEEcC---eeecCchhhhhh----HHHH--HHHHHHhhc
Confidence 7999999999999999999977431 12111 123333 689999963110 1112 112245789
Q ss_pred ccEEEEEeccchh------hH-HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCC
Q 007334 406 AHVVALVLDAEEV------RA-VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 406 ad~~llViD~~~~------~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
||++++|+|++++ .. .....|+++|+||+|+.+.....+..+ +..+. ....+++++||++|.
T Consensus 63 ad~vilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~--------~~~~~---~~~~~~~~~Sa~~~~ 131 (142)
T TIGR02528 63 ADVIALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVDIERAK--------ELLET---AGAEPIFEISSVDEQ 131 (142)
T ss_pred CCEEEEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcccCHHHHH--------HHHHH---cCCCcEEEEecCCCC
Confidence 9999999999876 11 112469999999999975321111111 11111 123489999999999
Q ss_pred CHHHHHHHHH
Q 007334 479 GRIAVMHQVI 488 (607)
Q Consensus 479 gv~~l~~~i~ 488 (607)
|++++|+.+.
T Consensus 132 gi~~l~~~l~ 141 (142)
T TIGR02528 132 GLEALVDYLN 141 (142)
T ss_pred CHHHHHHHHh
Confidence 9999998763
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=162.50 Aligned_cols=166 Identities=21% Similarity=0.243 Sum_probs=121.2
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCee-EEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR-FKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~-~~liDTpG~~~~~~~~~~~~~~ 193 (607)
...+.++.|.+||.||+|||||+|+|+..+. .+.++++ ||.....+.+.+++.. +.+-|.||++.....+.-+.
T Consensus 191 lELKsiadvGLVG~PNAGKSTLL~als~AKp-kVa~YaF--TTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG-- 265 (366)
T KOG1489|consen 191 LELKSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAF--TTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLG-- 265 (366)
T ss_pred EEeeeecccceecCCCCcHHHHHHHhhccCC-cccccce--eeeccccceeeccccceeEeccCccccccccccCccc--
Confidence 4445578999999999999999999999876 4677777 9999999988887655 99999999997665432211
Q ss_pred HHHHHHHhhccCEEEEEEecCCC---CCHhHHH-HH---HHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC
Q 007334 194 AGMTANVLAKTQFAIFMIDVRSG---LHPLDLE-VG---KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF 266 (607)
Q Consensus 194 ~~~~~~~~~~ad~vl~VvD~s~~---~~~~~~~-~~---~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~ 266 (607)
..-+..++.|+.++||+|++.+ ..-++.+ +. +.+++...++|.++|+||+|+.+.+. ......+..+.-
T Consensus 266 -~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~---~~l~~L~~~lq~ 341 (366)
T KOG1489|consen 266 -YKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK---NLLSSLAKRLQN 341 (366)
T ss_pred -HHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH---HHHHHHHHHcCC
Confidence 2235678899999999999987 2222222 22 22333345789999999999864321 111333444554
Q ss_pred CCcEEeecCCCCChHHHHHHhcc
Q 007334 267 GDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
+.++++||++|+|+.+|++.|.+
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhh
Confidence 45899999999999999998764
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-18 Score=160.59 Aligned_cols=153 Identities=19% Similarity=0.216 Sum_probs=96.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++... ...+..+..+.....+...+ ..+.+|||||+.+... .....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----------~~~~~ 68 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----------LRPLS 68 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----------cchhh
Confidence 5899999999999999999997743 12233334444444444444 4678999999754311 01124
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh-hCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT-VIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 467 (607)
++.+|++++|+|+++. .....++|+++|+||+|+.+..............+..+... ........
T Consensus 69 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 148 (171)
T cd00157 69 YPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAI 148 (171)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCe
Confidence 4679999999999874 01123699999999999986542210000000000001111 11111233
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++++.|.+
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 149 GYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEEeecCCCCCHHHHHHHHhh
Confidence 8999999999999999998865
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-17 Score=185.89 Aligned_cols=153 Identities=24% Similarity=0.294 Sum_probs=117.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..|+|+|+|++|+|||||+++|.+.++. ....++ .|.+.....+.+.+..+.||||||+. .|..+..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~G--IT~~iga~~v~~~~~~ItfiDTPGhe----------~F~~m~~ 355 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGG--ITQHIGAYQVETNGGKITFLDTPGHE----------AFTAMRA 355 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCc--eeeeccEEEEEECCEEEEEEECCCCc----------cchhHHH
Confidence 3689999999999999999999876653 233344 77777777778888999999999998 3444555
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-------cC-CCCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM-------LG-FGDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-------~~-~~~~i 270 (607)
..+..+|++|+|+|+.++...+..+.+.++... +.|+|+|+||+|+..... ......+.. .+ ..+++
T Consensus 356 rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~--~vPiIVviNKiDl~~a~~---e~V~~eL~~~~~~~e~~g~~vp~v 430 (787)
T PRK05306 356 RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA--GVPIIVAINKIDKPGANP---DRVKQELSEYGLVPEEWGGDTIFV 430 (787)
T ss_pred hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc--CCcEEEEEECccccccCH---HHHHHHHHHhcccHHHhCCCceEE
Confidence 678889999999999999888877766666655 789999999999965321 111111111 11 12689
Q ss_pred EeecCCCCChHHHHHHhcc
Q 007334 271 AISAETGLGMTELYEALRP 289 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~ 289 (607)
++||++|.|+++|++.|..
T Consensus 431 pvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 431 PVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEeCCCCCCchHHHHhhhh
Confidence 9999999999999999874
|
|
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=155.68 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=92.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+.+++..... ..++.+ .......+.+++. .+.+|||+|... ..+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~--~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~---------------~~~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYV--QLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD---------------AQF 62 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCC--CCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc---------------hhH
Confidence 47999999999999999999865321 223322 2233355677774 577999999531 134
Q ss_pred HhhccEEEEEeccchhh-------------HHh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC-CCCC
Q 007334 403 LMRAHVVALVLDAEEVR-------------AVE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP-QVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-------------~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 466 (607)
++.+|++++|+|.++.. ... .+.|+++|+||+|+....... +..+..+.++ ....
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~---------v~~~~~~~~~~~~~~ 133 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRV---------IDDARARQLCADMKR 133 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcc---------cCHHHHHHHHHHhCC
Confidence 56799999999999860 111 357999999999985321110 1111111111 1224
Q ss_pred CCEEEcccCCCCCHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++|||++|.||+++|..+.+
T Consensus 134 ~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 134 CSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CcEEEEecCCCCCHHHHHHHHHh
Confidence 68999999999999999998875
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=153.24 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=100.5
Q ss_pred EEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh
Q 007334 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA 202 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 202 (607)
|+|+|++|||||||+|+|++..+.. ...|. +. .....+..++..+.+|||||+. ++......++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~t--~~--~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~ 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIPT--VG--FNMRKVTKGNVTLKVWDLGGQP----------RFRSMWERYCR 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccCC--CC--cceEEEEECCEEEEEEECCCCH----------hHHHHHHHHHh
Confidence 8999999999999999999876531 11221 22 2223344567889999999987 45556677889
Q ss_pred ccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH--hcC--CCCcEEeecC
Q 007334 203 KTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL--MLG--FGDPIAISAE 275 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~~~--~~~~i~iSA~ 275 (607)
.+|++++|+|+++...... ..+..++... ..++|+++|+||+|+..... ......... ... ..+++++||+
T Consensus 67 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 144 (159)
T cd04159 67 GVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCK 144 (159)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEec
Confidence 9999999999987544332 1122222221 24689999999999875432 111111111 011 1256999999
Q ss_pred CCCChHHHHHHhcc
Q 007334 276 TGLGMTELYEALRP 289 (607)
Q Consensus 276 ~g~gi~eL~~~i~~ 289 (607)
+|.|+++++++|.+
T Consensus 145 ~~~gi~~l~~~l~~ 158 (159)
T cd04159 145 EKTNIDIVLDWLIK 158 (159)
T ss_pred cCCChHHHHHHHhh
Confidence 99999999998864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-17 Score=155.58 Aligned_cols=144 Identities=22% Similarity=0.283 Sum_probs=98.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|++|||||||++++.+.......+..|.+. ..+.+++..+.+|||||..+.. .....++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~----------~~~~~~~ 79 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQRAIR----------PYWRNYF 79 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCHHHH----------HHHHHHh
Confidence 5899999999999999999999875444444445433 2455678899999999964321 1233566
Q ss_pred hhccEEEEEeccchhh---------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR---------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~---------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++++|+|+++.. ....++|+++++||+|+.+.....+ +.+.+. +... .....+
T Consensus 80 ~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----i~~~l~--~~~~--~~~~~~ 151 (173)
T cd04155 80 ENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEE----IAEALN--LHDL--RDRTWH 151 (173)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHH----HHHHcC--Cccc--CCCeEE
Confidence 7899999999998640 1124689999999999876432211 111110 0000 011235
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~ 489 (607)
++++||++|+|++++|++|.+
T Consensus 152 ~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 152 IQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEeECCCCCCHHHHHHHHhc
Confidence 789999999999999998864
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=157.19 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=99.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+|++.+.....+.+ |..+....+.+++.++.+|||||..... .....++
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~~~ 82 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP----TQHPTSEELAIGNIKFTTFDLGGHQQAR----------RLWKDYF 82 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccccceEEEEECCEEEEEEECCCCHHHH----------HHHHHHh
Confidence 4799999999999999999999864333322 3333344556778899999999964321 1234677
Q ss_pred hhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC-----CC
Q 007334 404 MRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI-----PQ 463 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 463 (607)
..+|++++|+|+++. .. ...++|+++|+||+|+.......+ +.+.+. +.+.. ..
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~----i~~~l~--l~~~~~~~~~~~ 156 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDE----LRYALG--LTNTTGSKGKVG 156 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHH----HHHHcC--CCcccccccccC
Confidence 899999999999875 01 124789999999999865422221 222111 00000 01
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.....++++||++|.|++++++++..
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHh
Confidence 12346999999999999999998864
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=183.77 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=119.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceee--eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~--v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.|+++|++|+|||||+|+|++..... ....++ +|.+..+..+.+.+..+.+|||||+. ++...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rG--iTid~~~~~~~~~~~~v~~iDtPGhe----------~f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRG--MTIDLGFAYFPLPDYRLGFIDVPGHE----------KFISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCC--ceEEeEEEEEEeCCEEEEEEECCCHH----------HHHHHHHh
Confidence 69999999999999999999754211 112344 88888888888888999999999987 66677778
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc--HHHHHHHHHhcCC---CCcEEee
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LAGAAAESLMLGF---GDPIAIS 273 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~--~~~~~~~~~~~~~---~~~i~iS 273 (607)
.+..+|++++|+|++++...+..+...++... ++| +|+|+||+|+.+..... ..+....+...++ .+++++|
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLL--GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 88999999999999998888777766777665 677 99999999997642211 1111222223332 3789999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|+|++++++.|...+.
T Consensus 148 A~tG~GI~eL~~~L~~l~~ 166 (581)
T TIGR00475 148 AKTGQGIGELKKELKNLLE 166 (581)
T ss_pred CCCCCCchhHHHHHHHHHH
Confidence 9999999999998876554
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-17 Score=157.45 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=103.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc-cCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++..... + +.++.||||||+...... ...+.+. ....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~-~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQ-KLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHH-HHHH
Confidence 45799999999999999999999864 466778889887754332 2 478999999997543111 1111111 1112
Q ss_pred HHHh---hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLM---RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~---~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.++. .++++++|+|++.+ .....++|+++++||+|+.+........+. +...+... ..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~--------i~~~l~~~-~~ 169 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKK--------VRKALKFG-DD 169 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHH--------HHHHHHhc-CC
Confidence 2333 45788999997764 112357899999999999765322111111 22222111 46
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 899999999999999998887654
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=159.15 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=99.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+++|++|||||||+++|.+.......+ |.......+.+++..+.+|||||..+.. .....++
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~~~----------~~~~~~~ 84 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHEQAR----------RLWKDYF 84 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCCHHHH----------HHHHHHh
Confidence 4799999999999999999999765322222 2333345667788999999999954321 1234577
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC-------
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI------- 461 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------- 461 (607)
+.+|++++|+|+++. ... ..+.|+++++||+|+...... +.+...+.. ....
T Consensus 85 ~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~----~~~~~~~~~--~~~~~~~~~~~ 158 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE----EELRQALGL--YGTTTGKGVSL 158 (190)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH----HHHHHHhCc--ccccccccccc
Confidence 899999999999874 111 246899999999998653221 111111110 0000
Q ss_pred --CCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 462 --PQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 462 --~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
......+++++||++|+|++++|+.+.+.
T Consensus 159 ~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 01123568999999999999999988653
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=154.62 Aligned_cols=142 Identities=25% Similarity=0.260 Sum_probs=100.6
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|++|||||||++++++.. ....+..++.+.....+..++ ..+.+|||||..+. . ......+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~-~~~~~~~ 68 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF---------S-AMRDLYI 68 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH---------H-HHHHHHH
Confidence 58999999999999999999764 455566666666666666664 46789999996432 1 1233567
Q ss_pred hhccEEEEEeccchhh-------------HHh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEVR-------------AVE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~~-------------~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++++|+|.++.. ... .++|+++|+||+|+....... .+... .+.. ..+.+
T Consensus 69 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-----~~~~----~~~~~ 137 (160)
T cd00876 69 RQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS--KEEGK-----ALAK----EWGCP 137 (160)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec--HHHHH-----HHHH----HcCCc
Confidence 7899999999998751 111 379999999999997632211 11111 1111 11368
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.|++++++.|.+.
T Consensus 138 ~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 138 FIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999999988753
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-17 Score=154.05 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=95.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE--cCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY--QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|+|.+.... ..++.++ +.......+ .+..+.+|||||..+.. .....+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 67 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDR----------ANLAAE 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhh----------HHHhhh
Confidence 38999999999999999999976432 2344332 222222233 34578899999964321 122345
Q ss_pred HhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+..+|++++|+|++++ . ....+.|+++|+||+|+.+........+.+ . .+...+.. ..+
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~--~~~ 140 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEM-L----PIMNEFRE--IET 140 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHH-H----HHHHHHhc--ccE
Confidence 6889999999999875 0 012368999999999997653211111111 0 11111111 137
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++|+.+.+..
T Consensus 141 ~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 141 CVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred EEEeccccccCHHHHHHHHHHHh
Confidence 99999999999999999887653
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=163.82 Aligned_cols=144 Identities=27% Similarity=0.313 Sum_probs=108.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|.||||||||+|+|++.. ..+.+++++|.++..+.+.+++..+++|||||+.+.... .. -...+...+++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~-~~--~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAAD-GK--GRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCccccccc-ch--hHHHHHHHhhcc
Confidence 68999999999999999999874 567889999999999999999999999999998654211 11 111234567889
Q ss_pred ccEEEEEeccchhh------------------------------------------------------------------
Q 007334 406 AHVVALVLDAEEVR------------------------------------------------------------------ 419 (607)
Q Consensus 406 ad~~llViD~~~~~------------------------------------------------------------------ 419 (607)
+|++++|+|+++..
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 99999999986530
Q ss_pred -----------HHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 420 -----------AVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 420 -----------~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
... ..+|+++|+||+|+..... . . .++. ..+++++||++|.|++++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-------~--------~-~~~~--~~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-------L--------D-LLAR--QPNSVVISAEKGLNLDELKE 219 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-------H--------H-HHhc--CCCEEEEcCCCCCCHHHHHH
Confidence 001 2369999999999975411 0 0 1111 24689999999999999999
Q ss_pred HHHHHH
Q 007334 486 QVIDTY 491 (607)
Q Consensus 486 ~i~~~~ 491 (607)
.+.+.+
T Consensus 220 ~i~~~L 225 (233)
T cd01896 220 RIWDKL 225 (233)
T ss_pred HHHHHh
Confidence 887743
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-18 Score=150.26 Aligned_cols=146 Identities=17% Similarity=0.156 Sum_probs=108.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||.++|.+|||||||+-+++... +....-..+..|.....+.++|. ++-||||||+.+++ ..+-.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~-fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR----------tLTpS 79 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT-FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR----------TLTPS 79 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc-cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh----------ccCHh
Confidence 4899999999999999999998542 22211222456777778888877 45699999977664 12346
Q ss_pred HHhhccEEEEEeccchhh---------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR---------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~---------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++++|.++|+|||++... ....++-.++|+||+|...+ +.+..+.+..++....
T Consensus 80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~-----------R~V~reEG~kfAr~h~ 148 (209)
T KOG0080|consen 80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE-----------RVVDREEGLKFARKHR 148 (209)
T ss_pred HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc-----------ccccHHHHHHHHHhhC
Confidence 889999999999999761 11235566899999996533 3344555666666677
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+-++++||++.+||+..|++++..+
T Consensus 149 ~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 149 CLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred cEEEEcchhhhccHHHHHHHHHHHH
Confidence 8899999999999999999887654
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=182.98 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=111.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee--------cc------CCCCceeeeeEEEEeeeC-----CeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV--------YN------TPDDHVTRDIREGLAKLG-----DLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v--------~~------~~~~~~T~~~~~~~~~~~-----~~~~~liDTpG~ 180 (607)
+.+|+|+|++|+|||||+++|+....++. .+ ..| .|.+.....+.+. ...+.||||||+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerG--iTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcC--CCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 56899999999999999999987532211 11 113 4555444334332 268999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHH
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE 260 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~ 260 (607)
. ++...+..++..||++|+|+|++++.+.++.....++.+. +.|+++|+||+|+............
T Consensus 81 ~----------dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~--~ipiIiViNKiDl~~~~~~~~~~el-- 146 (595)
T TIGR01393 81 V----------DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN--DLEIIPVINKIDLPSADPERVKKEI-- 146 (595)
T ss_pred H----------HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc--CCCEEEEEECcCCCccCHHHHHHHH--
Confidence 8 5666677889999999999999999888775433333333 7899999999998643211111112
Q ss_pred HHhcCC--CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 261 SLMLGF--GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 261 ~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+++ .+++++||++|.|+++|++.|.+.++.
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 222344 257999999999999999999877653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=169.89 Aligned_cols=151 Identities=27% Similarity=0.365 Sum_probs=117.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
-..|+++|++|+|||||+|+|++. ...+.+..++|.|+....+.+. |..+.+.||-|+.+.-+.+-.+.| ..|+..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~-~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF--ksTLEE 268 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGA-DVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF--KSTLEE 268 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhcc-CeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH--HHHHHH
Confidence 357999999999999999999976 4677899999999999888886 689999999999887443333333 567788
Q ss_pred HhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
...||++++|+|++++. .+ ...+|+|+|+||+|++..... . ..+... .. .
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~--------~~~~~~----~~-~ 332 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---L--------AELERG----SP-N 332 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---h--------hhhhhc----CC-C
Confidence 88999999999999981 11 135899999999998865320 0 111111 11 5
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+++||++|.|++.|.+.|.+.+..
T Consensus 333 ~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 333 PVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred eEEEEeccCcCHHHHHHHHHHHhhh
Confidence 8999999999999999999887664
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=161.73 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=111.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|+|.||||||||+|+|++... .+.+.++ +|.+...+.+.+.+..+.+|||||+........ ....+...++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~--tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~---~~~~~~l~~~ 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEF--TTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK---GRGRQVIAVA 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCC--ccccceEEEEEECCeEEEEEECCCcccccccch---hHHHHHHHhh
Confidence 689999999999999999998753 3566676 888888888888999999999999874432111 2334456789
Q ss_pred hccCEEEEEEecCCCCCHhH-------------------------------------------HHHHHHHHhh-------
Q 007334 202 AKTQFAIFMIDVRSGLHPLD-------------------------------------------LEVGKWLRKH------- 231 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~-------------------------------------------~~~~~~l~~~------- 231 (607)
+.+|++++|+|++++....+ ..+...|++.
T Consensus 76 ~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v 155 (233)
T cd01896 76 RTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV 155 (233)
T ss_pred ccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE
Confidence 99999999999976432111 1112222221
Q ss_pred ------------------CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 232 ------------------APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 232 ------------------~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
...+|+++|+||+|+... ++.. .+.. . ..++++||++|.|+++|++.|.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~-~~~~-~-~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 156 LIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELD-LLAR-Q-PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHH-HHhc-C-CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 123689999999998753 1111 2221 2 2579999999999999999988654
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=160.41 Aligned_cols=154 Identities=21% Similarity=0.221 Sum_probs=94.5
Q ss_pred ceEEEEcCCCCchhHHHH-HhhcCCc---eeecCCCCce--eeeEEEE--------EEEcCe--EEEEEecCCCcccccc
Q 007334 325 LQLAIVGRPNVGKSTLLN-ALLQEDR---VLVGPEAGLT--RDSVRVH--------FEYQGR--TVYLVDTAGWLQREKE 388 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin-~l~~~~~---~~~~~~~gtT--~~~~~~~--------~~~~~~--~~~liDTpG~~~~~~~ 388 (607)
+||+++|.+|||||||+. ++.+... .....+..|. .+..... ..++|. .+.||||||..+.
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 799999999999999996 5543311 1122222222 1222211 134444 6679999996421
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchhh--------H------HhcCCcEEEEEeCccCCCCcCchHH------HHH
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEVR--------A------VEEGRGLVVIVNKMDLLSGRQNSAL------YKR 448 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~~--------~------~~~~~p~ivv~NK~Dl~~~~~~~~~------~~~ 448 (607)
. ...++++||++|+|+|.++.. . ...+.|+|+|+||+||.+....... ...
T Consensus 80 --------~-~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~ 150 (195)
T cd01873 80 --------D-RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARP 150 (195)
T ss_pred --------h-hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccc
Confidence 0 123677999999999998760 0 1136899999999998642100000 000
Q ss_pred --HHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 449 --VKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 449 --~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
-.+.+..+.++.++...+++++++||++|.||+++|+.++++
T Consensus 151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 001222333334444457799999999999999999988763
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=183.54 Aligned_cols=154 Identities=23% Similarity=0.334 Sum_probs=114.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee----CCeeEEEecCCCCccccCchhHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL----GDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
..|.|+|+|++|+|||||+++|++...+. ...++ .|.+.....+.+ .+..+.+|||||+. .+.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~G--iTq~i~~~~v~~~~~~~~~kItfiDTPGhe----------~F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGG--ITQKIGAYEVEFEYKDENQKIVFLDTPGHE----------AFS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCc--cccccceEEEEEEecCCceEEEEEECCcHH----------HHH
Confidence 46899999999999999999999876542 22344 555443333333 35889999999987 566
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-------cC-C
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM-------LG-F 266 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-------~~-~ 266 (607)
.++..++..+|++|+|+|++++...+..+.+..+... ++|+|+|+||+|+..... ......+.. .+ .
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~--~iPiIVViNKiDl~~~~~---e~v~~eL~~~~ll~e~~g~~ 384 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA--NVPIIVAINKIDKANANT---ERIKQQLAKYNLIPEKWGGD 384 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc--CceEEEEEECCCccccCH---HHHHHHHHHhccchHhhCCC
Confidence 6677788999999999999998888777766666655 789999999999875321 111111111 12 2
Q ss_pred CCcEEeecCCCCChHHHHHHhccc
Q 007334 267 GDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
.+++++||++|.|+++|++.|...
T Consensus 385 vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 385 TPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred ceEEEEECCCCCCHHHHHHhhhhh
Confidence 367999999999999999988764
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=154.12 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=90.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|++|||||||+|+|.|.... . ..| ..+.+.+. .+|||||...... +. ......++..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~-----~~v~~~~~--~~iDtpG~~~~~~----~~--~~~~~~~~~~ 64 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKT-----QAVEFNDK--GDIDTPGEYFSHP----RW--YHALITTLQD 64 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccc-----eEEEECCC--CcccCCccccCCH----HH--HHHHHHHHhc
Confidence 6999999999999999999876321 1 111 12233333 2799999743321 11 1222345789
Q ss_pred ccEEEEEeccchh------hHH--hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCC
Q 007334 406 AHVVALVLDAEEV------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 406 ad~~llViD~~~~------~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g 477 (607)
||++++|+|+++. ... ..++|+++++||+|+.+.. . +.+. +.+. ... ...|++++||++|
T Consensus 65 ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~-~----~~~~----~~~~-~~~--~~~p~~~~Sa~~g 132 (158)
T PRK15467 65 VDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDAD-V----AATR----KLLL-ETG--FEEPIFELNSHDP 132 (158)
T ss_pred CCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCccc-H----HHHH----HHHH-HcC--CCCCEEEEECCCc
Confidence 9999999999865 111 2468999999999986531 1 1111 1111 111 1259999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 007334 478 RGRIAVMHQVIDTYQ 492 (607)
Q Consensus 478 ~gv~~l~~~i~~~~~ 492 (607)
+|++++|+.+.+...
T Consensus 133 ~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 133 QSVQQLVDYLASLTK 147 (158)
T ss_pred cCHHHHHHHHHHhch
Confidence 999999999887653
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-17 Score=175.97 Aligned_cols=159 Identities=26% Similarity=0.325 Sum_probs=121.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+||++|.||||||||||+|+|.+. .|++.|| +|.+...+.....+.++.++|.||..+-.+... -...+..+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpG--vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~----DE~Var~~ 76 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ-KVGNWPG--VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSE----DEKVARDF 76 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc-eecCCCC--eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCc----hHHHHHHH
Confidence 4699999999999999999999764 5899999 999999999999999999999999986554321 11223334
Q ss_pred h--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 201 L--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 201 ~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
+ ...|+++.|+|+++- +.+..+.-.|.+. +.|+++++|++|..+.+-...+ .......+|. +++++||++|+
T Consensus 77 ll~~~~D~ivnVvDAtnL--eRnLyltlQLlE~--g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGv-PVv~tvA~~g~ 150 (653)
T COG0370 77 LLEGKPDLIVNVVDATNL--ERNLYLTLQLLEL--GIPMILALNMIDEAKKRGIRID-IEKLSKLLGV-PVVPTVAKRGE 150 (653)
T ss_pred HhcCCCCEEEEEcccchH--HHHHHHHHHHHHc--CCCeEEEeccHhhHHhcCCccc-HHHHHHHhCC-CEEEEEeecCC
Confidence 3 466999999999863 2222233334455 7899999999999876543322 2233456787 89999999999
Q ss_pred ChHHHHHHhccchH
Q 007334 279 GMTELYEALRPSVE 292 (607)
Q Consensus 279 gi~eL~~~i~~~l~ 292 (607)
|++++++++.+..+
T Consensus 151 G~~~l~~~i~~~~~ 164 (653)
T COG0370 151 GLEELKRAIIELAE 164 (653)
T ss_pred CHHHHHHHHHHhcc
Confidence 99999999976443
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=162.85 Aligned_cols=152 Identities=26% Similarity=0.306 Sum_probs=109.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC-cchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG-PASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~~~ 402 (607)
...|+|.|.||||||||++++++.+ ..+.+||+||.....++++.++.+++++||||+.+...++. .-+.....++++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 3689999999999999999999874 78899999999999999999999999999999988732221 112222334455
Q ss_pred HhhccEEEEEeccchh---------hH-----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV---------RA-----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------~~-----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+ ++++++++|.+.. .. ..-..|+++|+||+|+.+.+... ++...+ ....+..
T Consensus 247 l--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~----~~~~~~--------~~~~~~~ 312 (346)
T COG1084 247 L--AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLE----EIEASV--------LEEGGEE 312 (346)
T ss_pred h--cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHH----HHHHHH--------Hhhcccc
Confidence 5 7899999999874 01 11247999999999998653221 111111 1112333
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
...+|+..+.+++.+-+.+...
T Consensus 313 ~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 313 PLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ccceeeeehhhHHHHHHHHHHH
Confidence 5688999999988777666554
|
|
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=154.40 Aligned_cols=144 Identities=22% Similarity=0.274 Sum_probs=98.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|.+|||||||+++|.+.......++.|.+ ...+.+++..+.+|||||..+.. .....+++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~~~~ 66 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGANFR----------GIWVNYYAE 66 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCcHHHH----------HHHHHHHcC
Confidence 4799999999999999999976322334444443 33556788899999999953321 123567889
Q ss_pred ccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC-CCCCCE
Q 007334 406 AHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGIPV 469 (607)
Q Consensus 406 ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 469 (607)
||++++|+|+++.. .. ..++|+++|+||+|+.+.....+..+. + .+.+.... ....++
T Consensus 67 a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~----~--~l~~~~~~~~~~~~~ 140 (167)
T cd04161 67 AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEY----L--SLEKLVNENKSLCHI 140 (167)
T ss_pred CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHh----c--CcccccCCCCceEEE
Confidence 99999999998750 01 147899999999999765432222111 1 01111111 123578
Q ss_pred EEcccCCC------CCHHHHHHHHHH
Q 007334 470 VFTSALEG------RGRIAVMHQVID 489 (607)
Q Consensus 470 v~iSA~~g------~gv~~l~~~i~~ 489 (607)
+++||++| .|+.+.|++|.+
T Consensus 141 ~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 141 EPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EEeEceeCCCCccccCHHHHHHHHhc
Confidence 88999998 899999998864
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-17 Score=154.91 Aligned_cols=154 Identities=18% Similarity=0.205 Sum_probs=97.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.||+++|.+|||||||+++|++... ...+..+..+.....+.+++. .+.+|||||..+... . ...+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~-~~~~ 69 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR---------L-RPLS 69 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh---------c-cccc
Confidence 4899999999999999999997632 223444444444445566655 567999999643321 1 1134
Q ss_pred HhhccEEEEEeccchh---hH-----------HhcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCC-CCCC
Q 007334 403 LMRAHVVALVLDAEEV---RA-----------VEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIP-QVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~---~~-----------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 466 (607)
+..+|++++|+|+++. .. ...++|+++|+||+|+.+............ ..+.....+.++ ....
T Consensus 70 ~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 70 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 5789999999999854 00 114789999999999875422111110000 001011111111 1223
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+++++||++|.|++++|+.+.+.
T Consensus 150 ~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 150 FGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred cEEEEeccccCcCHHHHHHHHHHH
Confidence 479999999999999999998764
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-17 Score=178.88 Aligned_cols=161 Identities=23% Similarity=0.281 Sum_probs=112.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC------------------CeeEEEecCCCCc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG------------------DLRFKVLDSAGLE 181 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~------------------~~~~~liDTpG~~ 181 (607)
.|.|+++|++|+|||||+|+|++.... ...++ ++|++.....+... ...+.+|||||++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~g-giTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAG-GITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc--cccCC-ceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 589999999999999999999987542 23332 14554332222211 1248999999987
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC----c----
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG----S---- 253 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~----~---- 253 (607)
.+......++..+|++++|+|++++...++.+...+++.. +.|+++|+||+|+...... .
T Consensus 81 ----------~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 81 ----------AFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred ----------hHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHH
Confidence 4555566678999999999999998888887777777765 7899999999999742110 0
Q ss_pred ----HHHH-----------HHHHHhcC--------------CCCcEEeecCCCCChHHHHHHhccchHHHH
Q 007334 254 ----LAGA-----------AAESLMLG--------------FGDPIAISAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 254 ----~~~~-----------~~~~~~~~--------------~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
.... ...+...| ..+++++||++|+|+++|+++|....+.++
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 0000 00112221 226799999999999999999876555444
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-17 Score=153.39 Aligned_cols=143 Identities=21% Similarity=0.223 Sum_probs=96.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
.|+++|.+|||||||+++|++.. ......|.+..+ ...+...+..+.+|||||..+.. .....++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~-~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~----------~~~~~~~~~ 67 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSER-SLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLR----------KYWKRYLSG 67 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-CcccccccCCcc--eEEEeeCCeEEEEEECCCCcchh----------HHHHHHHhh
Confidence 37999999999999999999763 222222222222 23455677889999999964331 223467889
Q ss_pred ccEEEEEeccchh-----------hHH--hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 406 AHVVALVLDAEEV-----------RAV--EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 406 ad~~llViD~~~~-----------~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
||++|+|+|+++. ... ..++|+++|+||+|+........ +.+.+ + ...++...+++++++
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i~~~~--~-~~~~~~~~~~~~~~~ 140 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQE----IHKEL--E-LEPIARGRRWILQGT 140 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHH----HHHHh--C-ChhhcCCCceEEEEe
Confidence 9999999999875 111 25799999999999876532211 11111 0 112333346788999
Q ss_pred ccCC------CCCHHHHHHHHH
Q 007334 473 SALE------GRGRIAVMHQVI 488 (607)
Q Consensus 473 SA~~------g~gv~~l~~~i~ 488 (607)
||++ ++||.++|+.++
T Consensus 141 Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eecCCCChhHHHHHHHHHHHHh
Confidence 9988 999999998775
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-17 Score=177.36 Aligned_cols=151 Identities=30% Similarity=0.342 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeec------------------------------CCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVG------------------------------PEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~------------------------------~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+++|++....+.. ..+|+|+|.....+++++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 3588999999999999999999855433221 2689999999999999999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch--h----------hHHhcCC-cEEEEEeCccCCCC
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE--V----------RAVEEGR-GLVVIVNKMDLLSG 439 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~--~----------~~~~~~~-p~ivv~NK~Dl~~~ 439 (607)
.+.||||||+.++. ..+...+..+|++|+|+|+++ + .....+. |+++|+||+|+.+.
T Consensus 85 ~i~liDtpG~~~~~----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~ 154 (425)
T PRK12317 85 YFTIVDCPGHRDFV----------KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNY 154 (425)
T ss_pred EEEEEECCCcccch----------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 99999999975431 112344678999999999987 3 1122354 69999999999753
Q ss_pred cCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 440 RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
. ...++.+.+.+...+...-......+++++||++|.|++++..
T Consensus 155 ~--~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 155 D--EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred c--HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 1 1122222222222221111111236899999999999987653
|
|
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.4e-17 Score=139.77 Aligned_cols=159 Identities=18% Similarity=0.269 Sum_probs=125.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+++-.|||.-|||||+|+..++.+++ ..+-|. +....+..+.++.. ..++++|||+|++ ++...
T Consensus 10 yifkyiiigdmgvgkscllhqftekkf--madcph-tigvefgtriievsgqkiklqiwdtagqe----------rfrav 76 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPH-TIGVEFGTRIIEVSGQKIKLQIWDTAGQE----------RFRAV 76 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHH--hhcCCc-ccceecceeEEEecCcEEEEEEeecccHH----------HHHHH
Confidence 367889999999999999999998765 333332 12223333334444 4679999999999 88889
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
+..+++.|...++|+|++...+... +..||.+. .++.-+++++||.|+...+.+..++..+.+...|+ .++++
T Consensus 77 trsyyrgaagalmvyditrrstynh--lsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl-~fle~ 153 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-MFLEA 153 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhh--HHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-EEEEe
Confidence 9999999999999999998877765 55777664 45667899999999999888888888888888888 78999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.++++.|-.-...+..
T Consensus 154 saktg~nvedafle~akkiyq 174 (215)
T KOG0097|consen 154 SAKTGQNVEDAFLETAKKIYQ 174 (215)
T ss_pred cccccCcHHHHHHHHHHHHHH
Confidence 999999999977655544443
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=170.77 Aligned_cols=152 Identities=26% Similarity=0.324 Sum_probs=107.1
Q ss_pred HHHHHHhhccC-EEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHH----HHHHHhcCCC--
Q 007334 195 GMTANVLAKTQ-FAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA----AAESLMLGFG-- 267 (607)
Q Consensus 195 ~~~~~~~~~ad-~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~----~~~~~~~~~~-- 267 (607)
..++..+..+| +|++|+|+.+..... ...+.+...++|+++|+||+|+.+... ..+.. ...+...|+.
T Consensus 60 ~~~l~~i~~~~~lIv~VVD~~D~~~s~----~~~L~~~~~~kpviLViNK~DLl~~~~-~~~~i~~~l~~~~k~~g~~~~ 134 (365)
T PRK13796 60 LKLLNGIGDSDALVVNVVDIFDFNGSW----IPGLHRFVGNNPVLLVGNKADLLPKSV-KKNKVKNWLRQEAKELGLRPV 134 (365)
T ss_pred HHHHHhhcccCcEEEEEEECccCCCch----hHHHHHHhCCCCEEEEEEchhhCCCcc-CHHHHHHHHHHHHHhcCCCcC
Confidence 34667777777 999999998754332 233333333689999999999975322 11111 1223344543
Q ss_pred CcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcC
Q 007334 268 DPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++.+||++|.|+++|++.|.+..+ ..++++||.||||||||+|+|++.
T Consensus 135 ~v~~vSAk~g~gI~eL~~~I~~~~~-------------------------------~~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 135 DVVLISAQKGHGIDELLEAIEKYRE-------------------------------GRDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC-------------------------------CCeEEEEcCCCCcHHHHHHHHHhh
Confidence 6799999999999999998864321 136999999999999999999854
Q ss_pred C-----ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 348 D-----RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 348 ~-----~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
. ...+++.||||++.....+ ++ ...|+||||+...
T Consensus 184 ~~~~~~~~~~s~~pGTT~~~~~~~l--~~-~~~l~DTPGi~~~ 223 (365)
T PRK13796 184 ITGEKDVITTSRFPGTTLDKIEIPL--DD-GSFLYDTPGIIHR 223 (365)
T ss_pred ccCccceEEecCCCCccceeEEEEc--CC-CcEEEECCCcccc
Confidence 2 3458999999999776543 22 2479999998643
|
|
| >KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-17 Score=143.83 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=108.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.-+|++++|..|.|||+|+.+++... ..-...-.+..+.....+.++++ +++||||+|+.+++ ..++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~k-fkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFR----------SVtR 76 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENK-FKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFR----------SVTR 76 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhh-hcccccceeeeeecceeeeecCcEEEEEEeecccHHHHH----------HHHH
Confidence 34799999999999999999999543 22222222344555556666665 67899999975553 4567
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.|+++|-++++|||++... ....++-+|+++||.||...+ ++.......+++...
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R-----------~VtflEAs~FaqEne 145 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPER-----------EVTFLEASRFAQENE 145 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhh-----------hhhHHHHHhhhcccc
Confidence 8999999999999999761 123467789999999997653 233444555666677
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+-+.++||++|+|+++.|-.+.+.+
T Consensus 146 l~flETSa~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 146 LMFLETSALTGENVEEAFLKCARTI 170 (214)
T ss_pred eeeeeecccccccHHHHHHHHHHHH
Confidence 7899999999999999998877654
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=147.66 Aligned_cols=159 Identities=27% Similarity=0.316 Sum_probs=111.3
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK 203 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 203 (607)
|+|.+|+|||||+|+|++.........++ +|.+......... +..+.+|||||+......... .......++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~---~~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPG--TTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE---REELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCC--cEECCeEEEEEecCCCcEEEEECCCCCccccchhh---HHHHHHHHHHh
Confidence 58999999999999999876554444444 6766666655554 678999999999854432211 12455567889
Q ss_pred cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHH--HHHHHHhcCCCCcEEeecCCCCChH
Q 007334 204 TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAG--AAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 204 ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~--~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
+|++++|+|++.+.......+...... .+.|+++|+||+|+.......... ...........+++++||.++.|++
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 999999999999877776553333333 378999999999998753321111 0111112223378999999999999
Q ss_pred HHHHHhccc
Q 007334 282 ELYEALRPS 290 (607)
Q Consensus 282 eL~~~i~~~ 290 (607)
++++.+.+.
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999988653
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-17 Score=148.90 Aligned_cols=142 Identities=20% Similarity=0.157 Sum_probs=96.8
Q ss_pred EEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhc
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRA 406 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~a 406 (607)
|+++|++|||||||+|+|.+.. ......|++..+.. .+..++..+.+|||||..... .....++..+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~~~~ 68 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFNMR--KVTKGNVTLKVWDLGGQPRFR----------SMWERYCRGV 68 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcceE--EEEECCEEEEEEECCCCHhHH----------HHHHHHHhcC
Confidence 7999999999999999999864 33333444443332 345567889999999964331 1234567889
Q ss_pred cEEEEEeccchhhH---------------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 407 HVVALVLDAEEVRA---------------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 407 d~~llViD~~~~~~---------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
|++++|+|+++... ...++|+++|+||+|+.+........+ .+.........+++++
T Consensus 69 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIE--------QMNLKSITDREVSCYS 140 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHH--------HhCcccccCCceEEEE
Confidence 99999999987410 014789999999999876532111111 1111111223468999
Q ss_pred cccCCCCCHHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVID 489 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~~ 489 (607)
+||++|.|++++++.+.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeccCCChHHHHHHHhh
Confidence 999999999999998864
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-17 Score=168.55 Aligned_cols=146 Identities=27% Similarity=0.349 Sum_probs=103.4
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcC-cHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTG-SLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~-~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
...++|.+++|++.....+... +-+||... ..++|+++|+||+|+...... ........+...++ +++++||++|
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~--Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~-~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNI--IDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGY-RVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHH--HHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCC-eEEEEeCCCC
Confidence 3578999999999876555543 23333221 236899999999999764221 11222333445676 8899999999
Q ss_pred CChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCC
Q 007334 278 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG 357 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g 357 (607)
.|+++|++.|... .++++|.||||||||+|+|++.....+++.++
T Consensus 194 ~GideL~~~L~~k-----------------------------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~ 238 (347)
T PRK12288 194 EGLEELEAALTGR-----------------------------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSD 238 (347)
T ss_pred cCHHHHHHHHhhC-----------------------------------CEEEECCCCCCHHHHHHHhccccceeeccccC
Confidence 9999999877421 26899999999999999999988788877775
Q ss_pred -------ceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 358 -------LTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 358 -------tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
||+......+..+ ..|+||||+..+.
T Consensus 239 ~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 239 NSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred cCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 5655443333222 2599999998774
|
|
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-17 Score=177.21 Aligned_cols=153 Identities=21% Similarity=0.232 Sum_probs=110.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeec------------------------c------CCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVY------------------------N------TPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~------------------------~------~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+++|+.....+.. + .+| +|+|.....+.+++
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG--~T~d~~~~~~~~~~ 83 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERG--VTIDLAHKKFETDK 83 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcC--ccceeeeEEEecCC
Confidence 368999999999999999999854433221 1 345 99999999999999
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC--CCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS--GLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~--~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
..+.+|||||+. ++...+...+..+|++++|+|+++ +...++.+...++.... ..|+++|+||+|+.
T Consensus 84 ~~i~liDtpG~~----------~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-~~~iivviNK~Dl~ 152 (425)
T PRK12317 84 YYFTIVDCPGHR----------DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-INQLIVAINKMDAV 152 (425)
T ss_pred eEEEEEECCCcc----------cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-CCeEEEEEEccccc
Confidence 999999999986 343444555788999999999998 66666666666665541 24689999999997
Q ss_pred cCCcCcH----HHHHHHHHhcCC----CCcEEeecCCCCChHHHHH
Q 007334 248 HNGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTELYE 285 (607)
Q Consensus 248 ~~~~~~~----~~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~~ 285 (607)
....... .+....+...++ .+++++||++|+|++++.+
T Consensus 153 ~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 153 NYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 5221111 122222334454 2579999999999987543
|
|
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=147.17 Aligned_cols=140 Identities=30% Similarity=0.420 Sum_probs=98.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|+|||||+|++++.. ......+++|.+.....+.+++ ..+.+|||||+.+... + ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~------~----~~~~ 70 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA------I----RRLY 70 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH------H----HHHH
Confidence 689999999999999999999876 7777888999988887778888 6788999999644321 0 1122
Q ss_pred HhhccEEEEEecc-------chhh---------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 403 LMRAHVVALVLDA-------EEVR---------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~-------~~~~---------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
...++.++.++|. .... ....+.|+++++||+|+..... .......+.....
T Consensus 71 ~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~ 138 (161)
T TIGR00231 71 YRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKL------------KTHVAFLFAKLNG 138 (161)
T ss_pred HhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchh------------hHHHHHHHhhccC
Confidence 3345555555554 3321 1112789999999999976421 1112222333446
Q ss_pred CCEEEcccCCCCCHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQV 487 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i 487 (607)
.+++++||++|.|+.++++.|
T Consensus 139 ~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 139 EPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred CceEEeecCCCCCHHHHHHHh
Confidence 689999999999999998875
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-17 Score=143.44 Aligned_cols=148 Identities=19% Similarity=0.174 Sum_probs=106.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
-+|+.++|...||||||+-++++.. +...-+..+..|.....+--.. .++++|||+|+.+ +.. .+..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddS-Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr---------yrt-iTTa 89 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER---------YRT-ITTA 89 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccc-cccceeeeeeeeEEEeEeeecccEEEEEEEecccchh---------hhH-HHHH
Confidence 3699999999999999999999763 3333444455565544433222 3788999999543 322 2446
Q ss_pred HHhhccEEEEEeccchhhH--------------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVRA--------------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~~--------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++++|+++||++|.++... ...+.|+|+|+||||+.+++- ++.+-...+++..|.
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRv-----------is~e~g~~l~~~LGf 158 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERV-----------ISHERGRQLADQLGF 158 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcccee-----------eeHHHHHHHHHHhCh
Confidence 8899999999999997511 135889999999999976632 222222233333477
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.++++|||.+.|+.++|+.+...+..
T Consensus 159 efFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 159 EFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHH
Confidence 89999999999999999999887653
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=160.53 Aligned_cols=147 Identities=24% Similarity=0.296 Sum_probs=112.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCccc-ccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQR-EKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~ 402 (607)
..|++||.||+|||||+|+|+... ..+.+|++||..+..+.+.+++. ++.+-|.||+.+. ....+.. ...+++
T Consensus 197 advGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG----~~FLrH 271 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLG----YKFLRH 271 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccccCccc----HHHHHH
Confidence 368999999999999999999765 58999999999999998888776 4999999999887 3333322 345689
Q ss_pred HhhccEEEEEeccchh----------------hH---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 403 LMRAHVVALVLDAEEV----------------RA---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------------~~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
+++|+++++|+|.+.. .. -...+|.+||+||+|+.+.+. ..++ ++.+.+.
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~--------~L~~~lq- 340 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLS--------SLAKRLQ- 340 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHH--------HHHHHcC-
Confidence 9999999999999865 11 124789999999999974421 1112 2232222
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+..|+++||++++|+.+++..+.+
T Consensus 341 --~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 341 --NPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred --CCcEEEeeeccccchHHHHHHHhh
Confidence 336999999999999999877643
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-17 Score=178.94 Aligned_cols=151 Identities=25% Similarity=0.301 Sum_probs=110.0
Q ss_pred cCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH--hhcc
Q 007334 127 GRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV--LAKT 204 (607)
Q Consensus 127 G~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~--~~~a 204 (607)
|+||||||||+|+|++.+. .+++.++ +|.+...+.+.+++.++.+|||||+.+...... . + .....+ ...+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG--~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~-e--~v~~~~l~~~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPG--VTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E-E--EVARDYLLNEKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCC--eEEEEEEEEEEECCeEEEEEECCCccccCccch-H-H--HHHHHHHhhcCC
Confidence 8999999999999999764 5778888 999999888888899999999999985432211 0 1 112222 2478
Q ss_pred CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHH
Q 007334 205 QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELY 284 (607)
Q Consensus 205 d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~ 284 (607)
|++++|+|+++.. .+..+...+.+. ++|+++|+||+|+.+...... ........++. +++++||++|+|+++++
T Consensus 74 DvvI~VvDat~le--r~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~~-d~~~L~~~lg~-pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 74 DLVVNVVDASNLE--RNLYLTLQLLEL--GIPMILALNLVDEAEKKGIRI-DEEKLEERLGV-PVVPTSATEGRGIERLK 147 (591)
T ss_pred CEEEEEecCCcch--hhHHHHHHHHhc--CCCEEEEEehhHHHHhCCChh-hHHHHHHHcCC-CEEEEECCCCCCHHHHH
Confidence 9999999998732 222333334343 789999999999875443222 22333445666 78999999999999999
Q ss_pred HHhccc
Q 007334 285 EALRPS 290 (607)
Q Consensus 285 ~~i~~~ 290 (607)
+.+.+.
T Consensus 148 ~~i~~~ 153 (591)
T TIGR00437 148 DAIRKA 153 (591)
T ss_pred HHHHHH
Confidence 999764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=8e-17 Score=173.03 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=82.3
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
.++.++||||+..... .. ........+.++|+|+||+|+..+.+..+..+.+.+++...+.|+++|+||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~--~~---L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dr 304 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PH---LQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR 304 (741)
T ss_pred CCEEEEECCCCCCccc--hH---HHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCc
Confidence 4689999999974221 11 122223479999999999999998888888888888876333599999999998643
Q ss_pred CcCcHHHHHHH---H-H--hcCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 250 GTGSLAGAAAE---S-L--MLGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 250 ~~~~~~~~~~~---~-~--~~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
.....+..... . . ...+..+++|||+.|.|+++|++.|..
T Consensus 305 eeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 305 NSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 32222222222 1 1 123557899999999999999999875
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-16 Score=146.37 Aligned_cols=161 Identities=25% Similarity=0.314 Sum_probs=107.0
Q ss_pred EEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 123 VMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
|+++|.+|||||||+|.|++.. ....+..++ .|.+.... ... ..+.+|||||+............+......++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~--~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPG--KTQLINFF--NVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCC--cceeEEEE--Ecc-CeEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 8999999999999999999533 333444444 55554332 222 38999999998743221112222333333333
Q ss_pred ---hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHH-HH-hcCCCCcEEeecC
Q 007334 202 ---AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAE-SL-MLGFGDPIAISAE 275 (607)
Q Consensus 202 ---~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~-~~-~~~~~~~i~iSA~ 275 (607)
...+++++|+|...+.+..+..+.+|+... +.|+++|+||+|+........ ...... .. .....+++++||+
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 346789999999887777777788888876 689999999999965422111 111111 11 1333477899999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
++.|+.++++.|.+.
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998754
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=160.65 Aligned_cols=161 Identities=25% Similarity=0.292 Sum_probs=120.2
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.+..+|++||+||||||||+|+|++.+. .+.++++ ||.....+.++++|.+++++|+||+......+.- .-.++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~F--TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g---rG~~v 134 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPF--TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG---RGRQV 134 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCc--eecccccceEeecCceEEEEcCcccccCcccCCC---Cccee
Confidence 3457899999999999999999999764 4677887 9999999999999999999999999976654322 12456
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH---HH----------------------------------------HHHHHHhh---
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD---LE----------------------------------------VGKWLRKH--- 231 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~---~~----------------------------------------~~~~l~~~--- 231 (607)
+..++.||+|++|+|+..+....+ .+ +...|++.
T Consensus 135 lsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~ 214 (365)
T COG1163 135 LSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH 214 (365)
T ss_pred eeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence 778899999999999986554221 01 11122221
Q ss_pred ----------------------CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 232 ----------------------APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 232 ----------------------~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
...+|.++|+||+|+...+ ....+... .+.+++||+.|.|+++|.+.|.+
T Consensus 215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e------~~~~l~~~--~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE------ELERLARK--PNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH------HHHHHHhc--cceEEEecccCCCHHHHHHHHHH
Confidence 0147899999999998731 11122221 27899999999999999999987
Q ss_pred chH
Q 007334 290 SVE 292 (607)
Q Consensus 290 ~l~ 292 (607)
.+.
T Consensus 287 ~L~ 289 (365)
T COG1163 287 VLG 289 (365)
T ss_pred hhC
Confidence 663
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=158.95 Aligned_cols=173 Identities=25% Similarity=0.283 Sum_probs=122.9
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
+..+.+.-|.+||.||||||||+++++..+.. +.++|+ ||.....+.+.. .+..|++-|.||++.....+.-+..
T Consensus 154 LELKllADVGLVG~PNaGKSTlls~vS~AkPK-IadYpF--TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~- 229 (369)
T COG0536 154 LELKLLADVGLVGLPNAGKSTLLSAVSAAKPK-IADYPF--TTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGL- 229 (369)
T ss_pred EEEeeecccccccCCCCcHHHHHHHHhhcCCc-ccCCcc--ccccCcccEEEecCCCcEEEecCcccccccccCCCccH-
Confidence 33445678999999999999999999998765 578888 999999998886 5566999999999976654332221
Q ss_pred HHHHHHHhhccCEEEEEEecCCCCC---HhHHH-HHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcC
Q 007334 194 AGMTANVLAKTQFAIFMIDVRSGLH---PLDLE-VGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLG 265 (607)
Q Consensus 194 ~~~~~~~~~~ad~vl~VvD~s~~~~---~~~~~-~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~ 265 (607)
.-+..++.+-+++||+|++.... .++.. +..-|.+. ..++|.++|+||+|+...++.. +....... ..+
T Consensus 230 --~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~-~~~~~~l~~~~~ 306 (369)
T COG0536 230 --RFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEEL-EELKKALAEALG 306 (369)
T ss_pred --HHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHH-HHHHHHHHHhcC
Confidence 22567889999999999986432 23322 33444443 2478999999999966543221 22222222 234
Q ss_pred CCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
....++|||.+++|+++|...+.+.+...
T Consensus 307 ~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 307 WEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 32334499999999999999999888764
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-17 Score=178.69 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=109.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCC--ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~--~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.|+++|++|+|||||+++|+|.+ ........|+|.+.....+.+++..+.+|||||+.++ . ..+..++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f---------~-~~~~~g~ 71 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF---------I-SNAIAGG 71 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH---------H-HHHHhhh
Confidence 58999999999999999999753 2233446789999888888888899999999996433 1 2345667
Q ss_pred hhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 404 MRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
.++|++++|+|++++ .....++| +|+|+||+|+.+... ++...+.+...+. ......+.+++++
T Consensus 72 ~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~----~~~~~~ei~~~l~-~~~~~~~~~ii~v 146 (581)
T TIGR00475 72 GGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEE----IKRTEMFMKQILN-SYIFLKNAKIFKT 146 (581)
T ss_pred ccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHH----HHHHHHHHHHHHH-HhCCCCCCcEEEE
Confidence 789999999999874 12235788 999999999986421 1111122211111 1111225799999
Q ss_pred ccCCCCCHHHHHHHHHHHHHH
Q 007334 473 SALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~~~ 493 (607)
||++|.|++++++.+......
T Consensus 147 SA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred eCCCCCCchhHHHHHHHHHHh
Confidence 999999999999887765543
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=146.50 Aligned_cols=151 Identities=32% Similarity=0.456 Sum_probs=110.3
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHHHhhcc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 407 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 407 (607)
++|++|+|||||+|+|++......++.+++|.+......... +..+.+|||||+.+..... ......+...+..+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~---~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG---REREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch---hhHHHHHHHHHHhCC
Confidence 579999999999999998876667788888888877766665 6789999999987653211 111234456778899
Q ss_pred EEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCC
Q 007334 408 VVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 408 ~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g 477 (607)
++++|+|++.. .....++|+++|+||+|+........... ............+++++||+++
T Consensus 78 ~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~sa~~~ 149 (163)
T cd00880 78 LILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLE--------LRLLILLLLLGLPVIAVSALTG 149 (163)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHH--------HHHhhcccccCCceEEEeeecc
Confidence 99999999876 12235899999999999987532211110 0111223345789999999999
Q ss_pred CCHHHHHHHHHHH
Q 007334 478 RGRIAVMHQVIDT 490 (607)
Q Consensus 478 ~gv~~l~~~i~~~ 490 (607)
.|+.++++.+.+.
T Consensus 150 ~~v~~l~~~l~~~ 162 (163)
T cd00880 150 EGIDELREALIEA 162 (163)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999888753
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.7e-17 Score=155.83 Aligned_cols=158 Identities=18% Similarity=0.072 Sum_probs=100.7
Q ss_pred EEEEecCCCCchhHHHHHhhccce-e-eeccCCCCceeeeeEEEEeeeC---------------------------C---
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRRE-A-LVYNTPDDHVTRDIREGLAKLG---------------------------D--- 169 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~-~-~v~~~~~~~~T~~~~~~~~~~~---------------------------~--- 169 (607)
+|+++|+.++|||||+.+|++... . .-....+ .|....+....+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERN--ITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET 79 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcC--CceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence 699999999999999999986511 0 0000011 1222211111111 2
Q ss_pred ---eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC-CCHhHHHHHHHHHhhCCCCcEEEEecCCC
Q 007334 170 ---LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-LHPLDLEVGKWLRKHAPQIKPIVAMNKCE 245 (607)
Q Consensus 170 ---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-~~~~~~~~~~~l~~~~~~~p~ilV~NK~D 245 (607)
..+.+|||||+. ++.......+..+|++++|+|++++ ......+.+..+... ...|+++|+||+|
T Consensus 80 ~~~~~i~~iDtPG~~----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~D 148 (203)
T cd01888 80 KLVRHVSFVDCPGHE----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKID 148 (203)
T ss_pred ccccEEEEEECCChH----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchh
Confidence 689999999986 5666777888899999999999975 344444444444443 2347899999999
Q ss_pred cccCCcCc--HHHHHHHHHhc--CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 246 SLHNGTGS--LAGAAAESLML--GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 246 ~~~~~~~~--~~~~~~~~~~~--~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+....... .......+... ...+++++||++|+|+++|++.|.+.++
T Consensus 149 l~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 149 LVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 97532110 01111111111 1226899999999999999999987664
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-17 Score=156.73 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=94.0
Q ss_pred EcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHHHhhcc
Q 007334 330 VGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 407 (607)
Q Consensus 330 vG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad 407 (607)
+|.+|||||||+++++... +.....+.+..+.....+.+++ ..+.||||||..++ .. ....+++++|
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~---------~~-l~~~~~~~ad 69 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF---------GG-LRDGYYIQGQ 69 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh---------hh-hhHHHhcCCC
Confidence 6999999999999999653 2222223222344444455544 47789999996433 11 2235788999
Q ss_pred EEEEEeccchhh-----------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 408 VVALVLDAEEVR-----------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 408 ~~llViD~~~~~-----------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
++|+|+|+++.. . ...+.|+++|+||+|+....... +.+ .+. ...+++++++||
T Consensus 70 ~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~---~~~------~~~----~~~~~~~~e~SA 136 (200)
T smart00176 70 CAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKA---KSI------TFH----RKKNLQYYDISA 136 (200)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCH---HHH------HHH----HHcCCEEEEEeC
Confidence 999999999861 1 12578999999999986432111 110 111 123578999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~ 492 (607)
++|.||.++|.++...+.
T Consensus 137 k~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 137 KSNYNFEKPFLWLARKLI 154 (200)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987654
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-17 Score=158.15 Aligned_cols=146 Identities=27% Similarity=0.284 Sum_probs=100.0
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCce------------------------------eecCCCCceeeeEEEEEEEcCeEEE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGRTVY 375 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~~~~ 375 (607)
.|+++|++++|||||+.+|+..... ......|+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 3899999999999999999632111 1112458999999999999999999
Q ss_pred EEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcC-CcEEEEEeCccCC
Q 007334 376 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEG-RGLVVIVNKMDLL 437 (607)
Q Consensus 376 liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~-~p~ivv~NK~Dl~ 437 (607)
+|||||+.++. ..+..++..+|++|+|+|++++ .....+ +|+|+|+||+|+.
T Consensus 81 liDtpG~~~~~----------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFV----------PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHH----------HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 99999975431 2334566789999999999872 111234 6899999999998
Q ss_pred CCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHH
Q 007334 438 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
........++.+.+.+...+...-.....++++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 43111222334433333222222111224789999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=176.07 Aligned_cols=150 Identities=24% Similarity=0.324 Sum_probs=106.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+.+|+++|++|+|||||+++|.+.+ ......+|+|.+.....+.+++. .+.||||||+.++. .++ .+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~---------~~r-~r 154 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT---------SMR-AR 154 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCcchh---------hHH-Hh
Confidence 45789999999999999999999764 44556778998877777777555 89999999975442 122 24
Q ss_pred HHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC-CCCCCCCEE
Q 007334 402 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI-PQVTGIPVV 470 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v 470 (607)
++..+|++++|+|++++ .....++|+|+++||+|+.+.. . +.+...+.. ..... ......+++
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-~----e~v~~~L~~-~g~~~~~~~~~~~~v 228 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-P----DRVKQELSE-YGLVPEDWGGDTIFV 228 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-H----HHHHHHHHH-hhhhHHhcCCCceEE
Confidence 56789999999999874 2234689999999999996532 1 111111111 00000 001135799
Q ss_pred EcccCCCCCHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~ 489 (607)
++||++|.|++++++.+..
T Consensus 229 ~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECCCCCChHHHHHhhhh
Confidence 9999999999999998864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=164.90 Aligned_cols=168 Identities=23% Similarity=0.341 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-CCCCcE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPI 270 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~i 270 (607)
++..+..+.+..+|+|+.|+|++++.+.....+.+++. ++|.++|+||+|+.+... .......+... +. .++
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~--~~~W~~~~~~~~~~-~~~ 95 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEV--TKKWKKYFKKEEGI-KPI 95 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHH--HHHHHHHHHhcCCC-ccE
Confidence 56677888999999999999999998888766666665 446699999999998532 22222333333 33 679
Q ss_pred EeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCce
Q 007334 271 AISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRV 350 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~ 350 (607)
.+|+.++.+...+..++....++.+...... .......+|++||.||||||||||+|++...+
T Consensus 96 ~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~-----------------~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~ 158 (322)
T COG1161 96 FVSAKSRQGGKKIRKALEKLSEEKIKRLKKK-----------------GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVA 158 (322)
T ss_pred EEEeecccCccchHHHHHHHHHHHHHHHhhc-----------------CCCccceEEEEEcCCCCcHHHHHHHHhcccce
Confidence 9999999998888866654433322221110 01123478999999999999999999999999
Q ss_pred eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 351 LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 351 ~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
.+++.||+|.+....... ..+.|+||||+....
T Consensus 159 ~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii~~~ 191 (322)
T COG1161 159 KTSNRPGTTKGIQWIKLD---DGIYLLDTPGIIPPK 191 (322)
T ss_pred eeCCCCceecceEEEEcC---CCeEEecCCCcCCCC
Confidence 999999999987765543 348999999987663
|
|
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=176.75 Aligned_cols=156 Identities=16% Similarity=0.151 Sum_probs=116.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeee--ccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALV--YNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v--~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.|+++|++|+|||||+++|++.+.... ....| .|.+..+..... ++..+.+|||||++ ++...+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rG--iTI~l~~~~~~~~~g~~i~~IDtPGhe----------~fi~~m~ 69 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRG--MTIDLGYAYWPQPDGRVLGFIDVPGHE----------KFLSNML 69 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCC--ceEEeeeEEEecCCCcEEEEEECCCHH----------HHHHHHH
Confidence 689999999999999999997542111 12235 788877666544 46779999999997 5666677
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc--HHHHHHHHHhcCC--CCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LAGAAAESLMLGF--GDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~--~~~~~~~~~~~~~--~~~i~iS 273 (607)
..+..+|++++|+|+.++..+++.+...++... ++| +|+|+||+|+.+..... ..+....+...++ .+++++|
T Consensus 70 ~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 788999999999999999999888888887766 556 57999999997532111 1112222233343 3689999
Q ss_pred cCCCCChHHHHHHhccch
Q 007334 274 AETGLGMTELYEALRPSV 291 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l 291 (607)
|++|.|+++|++.|.+..
T Consensus 148 A~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 148 ATEGRGIDALREHLLQLP 165 (614)
T ss_pred CCCCCCCHHHHHHHHHhh
Confidence 999999999999997644
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=170.49 Aligned_cols=145 Identities=23% Similarity=0.234 Sum_probs=103.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCc---------------eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDR---------------VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~---------------~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++|+|||||+|+|++... .......|+|++.....+.+++.++.|+||||+.++
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~-- 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY-- 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH--
Confidence 458999999999999999999997521 112234799999887778888889999999996432
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
...+...+..+|++++|+|+..+ .....++| +|+++||||+.+.. +.++.+.+.+...
T Consensus 89 --------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~---~~~~~~~~~l~~~ 157 (409)
T CHL00071 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDE---ELLELVELEVREL 157 (409)
T ss_pred --------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHH---HHHHHHHHHHHHH
Confidence 23345677889999999999865 23346788 77899999997542 2333333344333
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGR 480 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv 480 (607)
+...-.....+|++++||++|.|+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccc
Confidence 332211122489999999999875
|
|
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=179.73 Aligned_cols=150 Identities=25% Similarity=0.380 Sum_probs=109.5
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..+..|+++|++|+|||||+++|.+.+ ...+..+|+|.+.....+.+++..+.||||||+.++. .++ .+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~---------~m~-~r 356 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT---------AMR-AR 356 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCCccch---------hHH-Hh
Confidence 356789999999999999999998754 4455677888888777888889999999999975542 122 24
Q ss_pred HHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC--CCCCCE
Q 007334 402 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPV 469 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 469 (607)
.+..+|++|||||++++ .....++|+|+|+||+|+.... . +.+...+.. ...++. ...+++
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-~----e~V~~eL~~--~~~~~e~~g~~vp~ 429 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-P----DRVKQELSE--YGLVPEEWGGDTIF 429 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-H----HHHHHHHHH--hcccHHHhCCCceE
Confidence 56779999999999874 2234689999999999996532 1 111111111 001111 123789
Q ss_pred EEcccCCCCCHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++||++|.|++++++.+..
T Consensus 430 vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 430 VPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred EEEeCCCCCCchHHHHhhhh
Confidence 99999999999999998864
|
|
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=148.84 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=101.8
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
||+++|.++||||||+++|.+.. +.....+....+.....+..++.. +.||||+|..+. .... ...+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---------~~~~-~~~~ 69 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF---------DSLR-DIFY 69 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG---------HHHH-HHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccccccccccccccccccccccc---------cccc-cccc
Confidence 69999999999999999999764 222233333367777777777764 669999995332 1122 3467
Q ss_pred hhccEEEEEeccchh-------------hHHhc-CCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 404 MRAHVVALVLDAEEV-------------RAVEE-GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 404 ~~ad~~llViD~~~~-------------~~~~~-~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
..+|++|+|+|.++. ..... +.|++||+||.|+.+..... .+..+.++...+.++
T Consensus 70 ~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~-----------~~~~~~~~~~~~~~~ 138 (162)
T PF00071_consen 70 RNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS-----------VEEAQEFAKELGVPY 138 (162)
T ss_dssp TTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC-----------HHHHHHHHHHTTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccceeeeccccccccccch-----------hhHHHHHHHHhCCEE
Confidence 789999999999886 11122 58999999999987632211 111111112235799
Q ss_pred EEcccCCCCCHHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++||+++.|+.++|..+++.+.
T Consensus 139 ~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 139 FEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEBTTTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=176.16 Aligned_cols=159 Identities=21% Similarity=0.283 Sum_probs=111.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee--------ecc------CCCCceeeeeEEEEeee-----CCeeEEEecCCC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL--------VYN------TPDDHVTRDIREGLAKL-----GDLRFKVLDSAG 179 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~--------v~~------~~~~~~T~~~~~~~~~~-----~~~~~~liDTpG 179 (607)
.+.+|+|+|+.++|||||+.+|+.....+ +.+ ..| .|.......+.+ .+..++||||||
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerG--iTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERG--ITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcC--CcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 36789999999999999999998642211 111 112 343333333333 257899999999
Q ss_pred CccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHH
Q 007334 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAA 259 (607)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~ 259 (607)
+. ++...+..++..+|++|+|+|++++...++.....++... +.|+|+|+||+|+............
T Consensus 84 h~----------dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~--~lpiIvViNKiDl~~a~~~~v~~ei- 150 (600)
T PRK05433 84 HV----------DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--DLEIIPVLNKIDLPAADPERVKQEI- 150 (600)
T ss_pred cH----------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCCcccHHHHHHHH-
Confidence 98 5556667789999999999999999887775544444443 7899999999998653211111111
Q ss_pred HHHhcCC--CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 260 ESLMLGF--GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 260 ~~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+++ .+++++||++|.|+++|+++|.+.++.
T Consensus 151 -~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 151 -EDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred -HHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 122344 247999999999999999999887764
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=157.96 Aligned_cols=154 Identities=20% Similarity=0.260 Sum_probs=115.0
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCccc-ccccCcchhHHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i 403 (607)
.|++||.||+|||||+++++.. ...+.+||+||..+..+.+.. .+..+.+-|.||+.+. ....+.. .+.+++|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~A-kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG----~~FLrHI 235 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAA-KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLG----LRFLRHI 235 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhc-CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCcc----HHHHHHH
Confidence 5899999999999999999976 577899999999999988886 4557999999999887 3223322 4567899
Q ss_pred hhccEEEEEeccchh-------------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAEEV-------------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~~~-------------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+|-++++|+|.+.. .....++|.+||+||+|++...+ .++.+.+.+ .+. .
T Consensus 236 ERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e---~~~~~~~~l----~~~---~ 305 (369)
T COG0536 236 ERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE---ELEELKKAL----AEA---L 305 (369)
T ss_pred HhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHH---HHHHHHHHH----HHh---c
Confidence 999999999999843 11235899999999999765422 222222222 211 1
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
.+...++|||.+++|+++|...+.+.+.+.
T Consensus 306 ~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 306 GWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 223333399999999999999998877654
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=173.14 Aligned_cols=160 Identities=23% Similarity=0.277 Sum_probs=119.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeec---------------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVY---------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~---------------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
+.+|+|+|+.++|||||+++|+.....+.. ...+ .|.......+.+++.++.+|||||+.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erG--iTi~~~~~~i~~~~~~inliDTPG~~--- 79 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERG--ITILAKNTAIKWNDYRINIVDTPGHA--- 79 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCc--eEEEEEEEEEecCCEEEEEEECCCcc---
Confidence 578999999999999999999964322111 1223 67777777888899999999999998
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHHh
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLM 263 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~~ 263 (607)
++...+..++..+|++++|+|++++...+...++.++... ++|.++|+||+|+........ .+....+..
T Consensus 80 -------df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~ 150 (607)
T PRK10218 80 -------DFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVN 150 (607)
T ss_pred -------hhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhc
Confidence 5556677889999999999999998888777777766665 789999999999875433221 222222222
Q ss_pred cCC------CCcEEeecCCCC----------ChHHHHHHhccchHH
Q 007334 264 LGF------GDPIAISAETGL----------GMTELYEALRPSVED 293 (607)
Q Consensus 264 ~~~------~~~i~iSA~~g~----------gi~eL~~~i~~~l~~ 293 (607)
++. .+++++||.+|. |+..|++.|.+.++.
T Consensus 151 l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 151 LDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 121 257999999998 588899888877764
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-16 Score=150.67 Aligned_cols=168 Identities=16% Similarity=0.161 Sum_probs=117.5
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeecc-CCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC-chhHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYN-TPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT-SGSILDRTAGMTAN 199 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~-~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~ 199 (607)
+|+|+|.||||||||+|+|+|.+...+.. .++ +|+++......+.+..+.+|||||+.+... ..............
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~--~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASS--VTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCC--cccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 69999999999999999999987654432 233 888888888888999999999999985432 12222233333333
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCC---CCcEEEEecCCCcccCCcCc------HHHHHHHHHhcCCCCcE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNGTGS------LAGAAAESLMLGFGDPI 270 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~---~~p~ilV~NK~D~~~~~~~~------~~~~~~~~~~~~~~~~i 270 (607)
.....|++|+|+|+.. .+..+..+++++++.+. -.++++|+|++|........ ...........+- ..+
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~-r~~ 157 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG-RYV 157 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC-eEE
Confidence 4567899999999988 88888888888887643 26889999999987643211 0111222222222 222
Q ss_pred Ee-----ecCCCCChHHHHHHhccchHH
Q 007334 271 AI-----SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 271 ~i-----SA~~g~gi~eL~~~i~~~l~~ 293 (607)
.. |+..+.++.+|++.|.+.+++
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 22 467788999999999887764
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-16 Score=174.12 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=119.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceee-----ec----------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREAL-----VY----------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v~----------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 185 (607)
.+|+|+|+.++|||||+++|+.....+ +. ...| .|.......+.+.+.++.+|||||+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerG--iTI~~~~~~v~~~~~kinlIDTPGh~---- 75 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERG--ITILAKNTAIRYNGTKINIVDTPGHA---- 75 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCC--ccEEeeeEEEEECCEEEEEEECCCHH----
Confidence 579999999999999999998632211 11 1123 67777777788899999999999997
Q ss_pred chhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHHhc
Q 007334 186 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLML 264 (607)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~~~ 264 (607)
++...+..++..+|++++|+|++++...+...++.++... ++|+|+|+||+|+...+.... .+....+..+
T Consensus 76 ------DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~ 147 (594)
T TIGR01394 76 ------DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAEL 147 (594)
T ss_pred ------HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhh
Confidence 5666778889999999999999998888877777777765 789999999999875432111 1222222222
Q ss_pred -------CCCCcEEeecCCCC----------ChHHHHHHhccchHH
Q 007334 265 -------GFGDPIAISAETGL----------GMTELYEALRPSVED 293 (607)
Q Consensus 265 -------~~~~~i~iSA~~g~----------gi~eL~~~i~~~l~~ 293 (607)
.+ +++++||++|. |++.|++.|.+.++.
T Consensus 148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~ 192 (594)
T TIGR01394 148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA 192 (594)
T ss_pred ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence 23 67999999996 799999999887764
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=139.67 Aligned_cols=107 Identities=34% Similarity=0.546 Sum_probs=85.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|.+|+|||||+|+|++.+...+++.+++|++.....+.+++..+.|+||||+.+........ .....+.+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQISK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHHHH
Confidence 6899999999999999999997778899999999999887888999999999999986652111100 122345667788
Q ss_pred ccEEEEEeccchh---------hHHhcCCcEEEEEeC
Q 007334 406 AHVVALVLDAEEV---------RAVEEGRGLVVIVNK 433 (607)
Q Consensus 406 ad~~llViD~~~~---------~~~~~~~p~ivv~NK 433 (607)
+|++++|+|+.+. ..+..++|+++|+||
T Consensus 80 ~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASNPITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence 9999999998764 223478999999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=140.47 Aligned_cols=141 Identities=19% Similarity=0.196 Sum_probs=105.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|.+||.+++|||||+++|.+..... . -|....+ .+ .+|||||-.-..+ .+.......
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~-----~--KTq~i~~-----~~---~~IDTPGEyiE~~------~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY-----K--KTQAIEY-----YD---NTIDTPGEYIENP------RFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc-----C--ccceeEe-----cc---cEEECChhheeCH------HHHHHHHHH
Confidence 479999999999999999999865321 1 2333332 22 4599999763332 455666777
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
..+||+|++|.|++++.......+.... ++|+|-|+||+|+..+. ...+.....+...|..++|++|+.+|+|+
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~-~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDD-ANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccch-hhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 8899999999999987665554444332 57999999999998432 23455566777889989999999999999
Q ss_pred HHHHHHhc
Q 007334 281 TELYEALR 288 (607)
Q Consensus 281 ~eL~~~i~ 288 (607)
++|.+.|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999875
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.6e-16 Score=144.22 Aligned_cols=158 Identities=25% Similarity=0.289 Sum_probs=104.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC-cchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG-PASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~~ 401 (607)
...|+++|++|||||||+|+|+++. -+.++.+||.|+..... ++++. +.++|.||..-...... .+.. .....+
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff--~~~~~-~~lVDlPGYGyAkv~k~~~e~w-~~~i~~ 99 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF--EVDDE-LRLVDLPGYGYAKVPKEVKEKW-KKLIEE 99 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE--EecCc-EEEEeCCCcccccCCHHHHHHH-HHHHHH
Confidence 4679999999999999999999965 48899999999886543 34333 88999999754422111 1111 111223
Q ss_pred HHh---hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLM---RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~---~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
|+. .-.++++++|+..+ .....++|+++|+||+|.+...........+. +.+..... ....
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~----~~l~~~~~--~~~~ 173 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVA----EELKKPPP--DDQW 173 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHH----HHhcCCCC--ccce
Confidence 333 24678889999876 33457999999999999987643322222221 11111111 1112
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++..|+.++.|++++...|.+.+
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHh
Confidence 88999999999998887776654
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.7e-18 Score=143.32 Aligned_cols=149 Identities=20% Similarity=0.200 Sum_probs=107.4
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHHHhhc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRA 406 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~a 406 (607)
++|.+++|||+|+-++-......-.-++.+..|.....++.++. ++++|||+|+.+++ ..+..+++.|
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfr----------svt~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFR----------SVTHAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHh----------hhhHhhhccc
Confidence 68999999999988776442222222344566766677777776 56799999976653 3456788999
Q ss_pred cEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 407 HVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 407 d~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
|++++++|+++. +.....+.+.+++||||+.+++ .+..+.++.++...++|++++
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er-----------~v~~ddg~kla~~y~ipfmet 140 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHER-----------AVKRDDGEKLAEAYGIPFMET 140 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhh-----------ccccchHHHHHHHHCCCceec
Confidence 999999999875 1123456789999999997642 223333444444558999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCC
Q 007334 473 SALEGRGRIAVMHQVIDTYQKWCLRL 498 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~~~~~~~~ 498 (607)
||++|.|++..|-.|.+.+.+.....
T Consensus 141 saktg~nvd~af~~ia~~l~k~~~~~ 166 (192)
T KOG0083|consen 141 SAKTGFNVDLAFLAIAEELKKLKMGA 166 (192)
T ss_pred cccccccHhHHHHHHHHHHHHhccCC
Confidence 99999999999999988776655443
|
|
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-16 Score=152.87 Aligned_cols=148 Identities=21% Similarity=0.236 Sum_probs=93.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCC--ceeecCCCCceeeeEEEEEEEc---------------------------C----
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEYQ---------------------------G---- 371 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~--~~~~~~~~gtT~~~~~~~~~~~---------------------------~---- 371 (607)
+.|+++|+.++|||||+.+|.+.. ...-.-.-|.|.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 368999999999999999998652 1111111122322222222221 3
Q ss_pred --eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCC
Q 007334 372 --RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLL 437 (607)
Q Consensus 372 --~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~ 437 (607)
..+.||||||+.+. ...+..++..+|++++|+|++++ .....+ .|+++|+||+|+.
T Consensus 81 ~~~~i~~iDtPG~~~~----------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 81 LVRHVSFVDCPGHEIL----------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cccEEEEEECCChHHH----------HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 68899999995322 23445667789999999999863 111223 4799999999997
Q ss_pred CCcCchHHHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 438 SGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.......++. +.+.+.. ..+.+++++||++|.|++++++.+.+.
T Consensus 151 ~~~~~~~~~~~--------i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 151 KEEQALENYEQ--------IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred CHHHHHHHHHH--------HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 53211111111 2222211 235789999999999999999887653
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-16 Score=166.93 Aligned_cols=144 Identities=26% Similarity=0.276 Sum_probs=99.3
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCC------ce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQED------RV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~------~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
++.++|+++|++++|||||+++|++.. .. ......|+|.+.....+..++..+.||||||+.++.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 345899999999999999999998631 11 111266899998777777778899999999964331
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
..+...+..+|++++|+|++++ .....++| +|+++||+|+.+.. +.++.+.+.+..
T Consensus 90 ----------~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~---~~~~~i~~~i~~ 156 (394)
T PRK12736 90 ----------KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDE---ELLELVEMEVRE 156 (394)
T ss_pred ----------HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchH---HHHHHHHHHHHH
Confidence 2334566789999999999874 23346888 67899999997532 222323333333
Q ss_pred HHHhhCCCCCCCCEEEcccCCCC
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
.+...-.....+|++++||++|.
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccc
Confidence 33222111235799999999984
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=161.81 Aligned_cols=145 Identities=28% Similarity=0.355 Sum_probs=100.2
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
.+.++|++++|+|++++..... .+.+|+... ..++|+++|+||+|+..... ........+...++ +++++||++|.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~-~v~~vSA~~g~ 153 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGY-DVLELSAKEGE 153 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCC-eEEEEeCCCCc
Confidence 4689999999999987654333 122333221 23789999999999963221 11222334445676 78999999999
Q ss_pred ChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCC-
Q 007334 279 GMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG- 357 (607)
Q Consensus 279 gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g- 357 (607)
|+++|++.+.. ..++++|.+|||||||+|+|++.....+++.++
T Consensus 154 gi~~L~~~l~g-----------------------------------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~ 198 (298)
T PRK00098 154 GLDELKPLLAG-----------------------------------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEA 198 (298)
T ss_pred cHHHHHhhccC-----------------------------------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceecc
Confidence 99999886531 258999999999999999999876665555553
Q ss_pred ------ceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 358 ------LTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 358 ------tT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
||+......+ ++ ...|+||||+...
T Consensus 199 ~~~G~htT~~~~~~~~--~~-~~~~~DtpG~~~~ 229 (298)
T PRK00098 199 LGRGKHTTTHVELYDL--PG-GGLLIDTPGFSSF 229 (298)
T ss_pred CCCCCcccccEEEEEc--CC-CcEEEECCCcCcc
Confidence 6655443322 22 2479999998765
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.1e-16 Score=153.41 Aligned_cols=115 Identities=20% Similarity=0.218 Sum_probs=89.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeee-----c------cCC----CCceeeeeEEEEeeeCCeeEEEecCCCCccccCc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALV-----Y------NTP----DDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS 186 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v-----~------~~~----~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 186 (607)
+|+++|++|+|||||+++|+.....+. . +.. ....|.......+.+.+.++.+|||||+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~----- 75 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHM----- 75 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCcc-----
Confidence 489999999999999999986532211 0 000 01134555667778889999999999998
Q ss_pred hhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 187 GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
++...+..+++.+|++++|+|++++.......+.+.+.+. ++|+++|+||+|+..
T Consensus 76 -----~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 76 -----DFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred -----chHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccccC
Confidence 4556677889999999999999999887776777777765 789999999999874
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=139.37 Aligned_cols=163 Identities=21% Similarity=0.222 Sum_probs=123.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-----------CCeeEEEecCCCCccccCchhH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-----------GDLRFKVLDSAGLETEATSGSI 189 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-----------~~~~~~liDTpG~~~~~~~~~~ 189 (607)
.+...+|.+||||||++.+.+..++.. ..-.++..|.....+.+ ..+.+++|||+|++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~---qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE-------- 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNT---QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE-------- 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccc---eeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHH--------
Confidence 356778999999999999999776421 11111223333222221 11468999999999
Q ss_pred HHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 190 LDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 190 ~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
++.+.|...+++|=+.++++|.++..++.+ +.+|+.++ ..+.-+++++||+|+...+.+...+..+.+...
T Consensus 79 --RFRSLTTAFfRDAMGFlLiFDlT~eqSFLn--vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~ky 154 (219)
T KOG0081|consen 79 --RFRSLTTAFFRDAMGFLLIFDLTSEQSFLN--VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKY 154 (219)
T ss_pred --HHHHHHHHHHHhhccceEEEeccchHHHHH--HHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHh
Confidence 899999999999999999999988766665 55666553 334568999999999998888878888888888
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchHHHHhhhh
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVEDYMLRVL 299 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l 299 (607)
|+ +.|++||-+|.++++..+.+.+.+-+.|.+..
T Consensus 155 gl-PYfETSA~tg~Nv~kave~LldlvM~Rie~~v 188 (219)
T KOG0081|consen 155 GL-PYFETSACTGTNVEKAVELLLDLVMKRIEQCV 188 (219)
T ss_pred CC-CeeeeccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 98 89999999999999988888877766555433
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-17 Score=142.67 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=119.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee--ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV--YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v--~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|..=||||||+-+++..++.-- +.....+.++....+. ....+.||||+|++ ++-..-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed---~ra~L~IWDTAGQE----------rfHALG 79 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED---CRADLHIWDTAGQE----------RFHALG 79 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc---ceeeeeeeeccchH----------hhhccC
Confidence 58999999999999999999998765221 1111122444433322 34578999999999 555555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..|++.++++++|+|+++..+++. +..|..++ ...+-+++|+||+|+.+.+.+...+....+...|. ..+++|
T Consensus 80 PIYYRgSnGalLVyDITDrdSFqK--VKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA-~y~eTS 156 (218)
T KOG0088|consen 80 PIYYRGSNGALLVYDITDRDSFQK--VKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGA-LYMETS 156 (218)
T ss_pred ceEEeCCCceEEEEeccchHHHHH--HHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhch-hheecc
Confidence 668899999999999999888876 44554443 44677899999999998887777777777777776 789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|+.+.||.|||+.+...+-+
T Consensus 157 Ak~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 157 AKDNVGISELFESLTAKMIE 176 (218)
T ss_pred cccccCHHHHHHHHHHHHHH
Confidence 99999999999998876544
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=144.86 Aligned_cols=147 Identities=20% Similarity=0.250 Sum_probs=104.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+..+|+++|.+|+||||++++|.......+.|+.|.. ...+.+++..+.+||.+|.......+ ..+
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~----~~~i~~~~~~~~~~d~gG~~~~~~~w----------~~y 78 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN----IEEIKYKGYSLTIWDLGGQESFRPLW----------KSY 78 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE----EEEEEETTEEEEEEEESSSGGGGGGG----------GGG
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccc----cceeeeCcEEEEEEeccccccccccc----------eee
Confidence 3579999999999999999999976544444444433 34567789999999999965432211 246
Q ss_pred HhhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++|+|+|+++. .....++|++|++||.|+.+.....+ +...+. ...+.....+
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~----i~~~l~---l~~l~~~~~~ 151 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEE----IKEYLG---LEKLKNKRPW 151 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHH----HHHHTT---GGGTTSSSCE
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhH----HHhhhh---hhhcccCCce
Confidence 6789999999999975 01124799999999999886543221 211111 1112223456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.++.+||++|+|+.+.+++|.+.
T Consensus 152 ~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 152 SVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHhc
Confidence 79999999999999999998765
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-16 Score=165.75 Aligned_cols=147 Identities=15% Similarity=0.071 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee---------------eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL---------------VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~---------------v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+|+|++....+ .....| +|.+.....+..++.++.++||||+.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg--~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARG--ITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCC--EeEEccEEEEccCCeEEEEEECCChH---
Confidence 4689999999999999999999752211 011244 78887776777778899999999976
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc--H-HHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--L-AGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~--~-~~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...++.+++..+... ++| +|+|+||+|+....... . .+....
T Consensus 87 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred -------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 5666667788999999999999999988888888887776 678 77899999997532210 1 122233
Q ss_pred HHhcCC----CCcEEeecCCCCCh
Q 007334 261 SLMLGF----GDPIAISAETGLGM 280 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~gi 280 (607)
+...++ .+++++||.+|.++
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccc
Confidence 334443 36799999999743
|
|
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=174.28 Aligned_cols=152 Identities=20% Similarity=0.337 Sum_probs=104.8
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE----cCeEEEEEecCCCcccccccCcchhHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY----QGRTVYLVDTAGWLQREKEKGPASLSVM 397 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~ 397 (607)
..+..|+++|++|+|||||+++|.+.. ......+|+|.+.....+.+ .+..+.||||||+..+ ..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F---------~~m 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF---------SSM 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEEEEEEecCCceEEEEEECCcHHHH---------HHH
Confidence 346789999999999999999999764 33445567777654444443 2478999999996433 222
Q ss_pred HHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC--CC
Q 007334 398 QSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ--VT 465 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 465 (607)
..+++..+|++|+|+|++++ .....++|+|+|+||+|+.... . +.+.+.+... ..++. ..
T Consensus 312 -r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-~----e~v~~eL~~~--~ll~e~~g~ 383 (742)
T CHL00189 312 -RSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-T----ERIKQQLAKY--NLIPEKWGG 383 (742)
T ss_pred -HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-H----HHHHHHHHHh--ccchHhhCC
Confidence 23567889999999999875 2234689999999999997532 1 1111111100 00011 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+|++++||++|.|+++|++.+....
T Consensus 384 ~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 384 DTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CceEEEEECCCCCCHHHHHHhhhhhh
Confidence 36899999999999999999887653
|
|
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=169.82 Aligned_cols=161 Identities=22% Similarity=0.359 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC------C------------eeEEEecCCCCc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG------D------------LRFKVLDSAGLE 181 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~------~------------~~~~liDTpG~~ 181 (607)
.|.|+|+|++|+|||||+|+|.+... ....++. .|++......+.. + ..+.+|||||++
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~-itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGG-ITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc--ccCCCCc-eEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 58999999999999999999987643 2333321 3433322111110 0 127899999998
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC---------
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--------- 252 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--------- 252 (607)
.+...+...+..+|++++|+|++++...+..+...+++.. +.|+++|+||+|+......
T Consensus 83 ----------~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~ 150 (586)
T PRK04004 83 ----------AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLES 150 (586)
T ss_pred ----------HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHH
Confidence 4555556677899999999999998888877777777665 7899999999998632110
Q ss_pred ----------cHH----HHHHHHHhcCC--------------CCcEEeecCCCCChHHHHHHhccchHHHH
Q 007334 253 ----------SLA----GAAAESLMLGF--------------GDPIAISAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 253 ----------~~~----~~~~~~~~~~~--------------~~~i~iSA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
..+ +....+...|+ .+++++||.+|+|+++|++.+....+.++
T Consensus 151 ~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l 221 (586)
T PRK04004 151 IEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL 221 (586)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence 000 00111222222 25799999999999999998875554433
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=147.81 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=105.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEe--eeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLA--KLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~--~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+++++........ .+. ...+.....+ ..+...+.+|||+|.. ++....
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~i~i~~~Dt~g~~----------~~~~~~ 75 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKY-IPT--LGVEVHPLKFYTNCGPICFNVWDTAGQE----------KFGGLR 75 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCC-CCc--cceEEEEEEEEECCeEEEEEEEECCCch----------hhhhhh
Confidence 468999999999999999887654431111 111 1222222222 2245789999999986 344445
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..++++++|+|+++..+..+. .+...+.....+.|+++|+||+|+..... . ..........++ .++++||++
T Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-~-~~~~~~~~~~~~-~~~e~Sa~~ 152 (215)
T PTZ00132 76 DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV-K-ARQITFHRKKNL-QYYDISAKS 152 (215)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC-C-HHHHHHHHHcCC-EEEEEeCCC
Confidence 6678899999999999987766542 23333333345789999999999865322 1 222233344455 679999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|+++++.+|...+.
T Consensus 153 ~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 153 NYNFEKPFLWLARRLT 168 (215)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999887653
|
|
| >KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-17 Score=137.49 Aligned_cols=156 Identities=17% Similarity=0.232 Sum_probs=114.1
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHHHHhh
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTANVLA 202 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 202 (607)
++|.+++|||+|+-++-...+ .......++..|.....++.++ .++++|||+|++ ++.+.+..|++
T Consensus 2 llgds~~gktcllir~kdgaf--l~~~fistvgid~rnkli~~~~~kvklqiwdtagqe----------rfrsvt~ayyr 69 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAF--LAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE----------RFRSVTHAYYR 69 (192)
T ss_pred ccccCccCceEEEEEeccCce--ecCceeeeeeeccccceeccCCcEEEEEEeeccchH----------HHhhhhHhhhc
Confidence 689999999999887754332 2222222244444444444444 578999999999 88999999999
Q ss_pred ccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 203 KTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+||.+++++|+.+..++.+. .++..+.+. .....+.+++||||+.+++.+..++....+...++ ++.++||++|.++
T Consensus 70 da~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsaktg~nv 148 (192)
T KOG0083|consen 70 DADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKTGFNV 148 (192)
T ss_pred ccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCC-CceeccccccccH
Confidence 99999999999998888762 233333332 22467889999999988766555555555555666 7799999999999
Q ss_pred HHHHHHhccchHH
Q 007334 281 TELYEALRPSVED 293 (607)
Q Consensus 281 ~eL~~~i~~~l~~ 293 (607)
+-.|-.|.+.+..
T Consensus 149 d~af~~ia~~l~k 161 (192)
T KOG0083|consen 149 DLAFLAIAEELKK 161 (192)
T ss_pred hHHHHHHHHHHHH
Confidence 9999988876654
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=151.12 Aligned_cols=154 Identities=24% Similarity=0.334 Sum_probs=107.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceee-----------------cCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLV-----------------GPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~-----------------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 388 (607)
.|+++|++|+|||||+++|+.....+. ....|+|.......+.+++.++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 389999999999999999986432211 1123556666667788999999999999975542
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhc-----
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAV----- 453 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~----- 453 (607)
..+..+++.+|++++|+|++++ .....++|+++++||+|+.... ....++.+++.+
T Consensus 79 --------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 79 --------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGAD-LEKVYQEIKEKLSSDIV 149 (237)
T ss_pred --------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCC-HHHHHHHHHHHHCCCeE
Confidence 2345688899999999999876 2234689999999999987532 122222222211
Q ss_pred -----------------------------------------------HHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHH
Q 007334 454 -----------------------------------------------PQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQ 486 (607)
Q Consensus 454 -----------------------------------------------~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~ 486 (607)
...+.+......-+|++..||.++.|+..|++.
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 150 PMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred EEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 111112222344579999999999999999998
Q ss_pred HHHH
Q 007334 487 VIDT 490 (607)
Q Consensus 487 i~~~ 490 (607)
+.+.
T Consensus 230 ~~~~ 233 (237)
T cd04168 230 ITKL 233 (237)
T ss_pred HHHh
Confidence 8764
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=149.14 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=95.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.||+++|.+|||||||+++|..... . ..+..++.+.....+.+++. .+.+|||||...... .. ...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---------~~-~~~ 69 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-P-EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER---------LR-PLS 69 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-C-cccCCcccceEEEEEEECCEEEEEEEEECCCChhccc---------cc-hhh
Confidence 4899999999999999999985432 1 22223344444445555554 467999999654321 00 124
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC-C
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG-I 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 467 (607)
+..+|++++|+|.++. .......|+|+|+||+|+.+........ ...+.+..+..+.++...+ .
T Consensus 70 ~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 70 YSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEY-RTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCccccccc-ccCCcCCHHHHHHHHHHhCCc
Confidence 5689999999999865 0112368999999999986431100000 0000000011111111123 4
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+..
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999988654
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=149.13 Aligned_cols=147 Identities=22% Similarity=0.249 Sum_probs=113.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..+|+++|.+|||||+|+.++++. ..+..+.+|..|.+...+.+++.. +.|+||+|..+ ++.++ ..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~--~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~---------~~~~~-~~ 70 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTG--RFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEE---------FSAMR-DL 70 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccc--ccccccCCCccccceEEEEECCEEEEEEEEcCCCccc---------ChHHH-HH
Confidence 368999999999999999999976 445667788888888888888764 55999999433 33333 35
Q ss_pred HHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++||++++. .. .....|+++|+||+|+...+ .+..+.++.++..++
T Consensus 71 ~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R-----------~V~~eeg~~la~~~~ 139 (196)
T KOG0395|consen 71 YIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER-----------QVSEEEGKALARSWG 139 (196)
T ss_pred hhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc-----------ccCHHHHHHHHHhcC
Confidence 78899999999999986 11 11357999999999998642 233334444455668
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||+...+++++|..+.+....
T Consensus 140 ~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred CcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 899999999999999999999887654
|
|
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.8e-16 Score=171.26 Aligned_cols=147 Identities=28% Similarity=0.426 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee--------ec------CCCCceeeeEEEEEEEc---C--eEEEEEecCCCccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL--------VG------PEAGLTRDSVRVHFEYQ---G--RTVYLVDTAGWLQR 385 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~--------~~------~~~gtT~~~~~~~~~~~---~--~~~~liDTpG~~~~ 385 (607)
.+++++|++++|||||+++|+.....+ +. ...|+|.+.....+.|. + ..+.||||||+.++
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998643211 11 23478887766666653 3 57889999998654
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
. ..+.+++..||++|+|+|++++ .....++|+|+|+||+|+.... .. ...+
T Consensus 84 ~----------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~-~~----~~~~---- 144 (595)
T TIGR01393 84 S----------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD-PE----RVKK---- 144 (595)
T ss_pred H----------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC-HH----HHHH----
Confidence 2 2344678899999999999875 2234689999999999986432 11 1111
Q ss_pred HHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++.+.+. ....+++++||++|.|++++|+.+.+.+
T Consensus 145 el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 145 EIEEVIG-LDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 2222211 1123589999999999999999887653
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-16 Score=152.84 Aligned_cols=149 Identities=22% Similarity=0.245 Sum_probs=101.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceee------------------------eccC----CCCceeeeeEEEEeeeCCeeEE
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREAL------------------------VYNT----PDDHVTRDIREGLAKLGDLRFK 173 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~------------------------v~~~----~~~~~T~~~~~~~~~~~~~~~~ 173 (607)
+|+++|++++|||||+.+|+.....+ +.+. ....+|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999997321110 0010 0133889998888889999999
Q ss_pred EecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC-------CCHhHHHHHHHHHhhCCCCcEEEEecCCCc
Q 007334 174 VLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-------LHPLDLEVGKWLRKHAPQIKPIVAMNKCES 246 (607)
Q Consensus 174 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-------~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~ 246 (607)
+|||||+. .+...+...+..+|++++|+|++++ ...+..+....+... ..+|+++|+||+|+
T Consensus 81 liDtpG~~----------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHR----------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChH----------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEcccc
Confidence 99999986 4455566778899999999999984 333333444444433 23688999999999
Q ss_pred ccCC--cCcHHHHH----HHHHhcCC----CCcEEeecCCCCChH
Q 007334 247 LHNG--TGSLAGAA----AESLMLGF----GDPIAISAETGLGMT 281 (607)
Q Consensus 247 ~~~~--~~~~~~~~----~~~~~~~~----~~~i~iSA~~g~gi~ 281 (607)
.... ........ ..+...++ .+++++||++|.|++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 8421 11111111 12344444 258999999999987
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-16 Score=162.13 Aligned_cols=168 Identities=20% Similarity=0.219 Sum_probs=130.1
Q ss_pred ccccccCCCEEEEecCCCCchhHHHHHhhccceee--------------eccCCCCceeeeeEEEEeeeCC---eeEEEe
Q 007334 113 TKIDINLLPTVMIIGRPNVGKSALFNRLIRRREAL--------------VYNTPDDHVTRDIREGLAKLGD---LRFKVL 175 (607)
Q Consensus 113 ~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~--------------v~~~~~~~~T~~~~~~~~~~~~---~~~~li 175 (607)
...+.+++.+++||.+-..|||||..+|+.....+ +....| .|...+...+.+.+ +.+++|
T Consensus 53 ~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERG--ITIkaQtasify~~~~~ylLNLI 130 (650)
T KOG0462|consen 53 SLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERG--ITIKAQTASIFYKDGQSYLLNLI 130 (650)
T ss_pred ccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcC--cEEEeeeeEEEEEcCCceEEEee
Confidence 44455667899999999999999999998543211 222334 66666655555555 889999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHH
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA 255 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~ 255 (607)
||||+. +|.......+..+|++|+|+|+++|...+....+...-+. +..+|.|+||+|+...+.+..+
T Consensus 131 DTPGHv----------DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--~L~iIpVlNKIDlp~adpe~V~ 198 (650)
T KOG0462|consen 131 DTPGHV----------DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--GLAIIPVLNKIDLPSADPERVE 198 (650)
T ss_pred cCCCcc----------cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--CCeEEEeeeccCCCCCCHHHHH
Confidence 999999 4556666778889999999999999999985544333333 7899999999999987766556
Q ss_pred HHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 256 GAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 256 ~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
....+...+...+++.+||++|.|+++++++|.+.++.+
T Consensus 199 ~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 199 NQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 666666666666899999999999999999999988753
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-16 Score=148.21 Aligned_cols=153 Identities=20% Similarity=0.140 Sum_probs=107.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|..|+|||||+++|.......+. .|.......+.+.+..+.+||.+|.. .+...+..
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~~~~------pT~g~~~~~i~~~~~~~~~~d~gG~~----------~~~~~w~~ 77 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEISETI------PTIGFNIEEIKYKGYSLTIWDLGGQE----------SFRPLWKS 77 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEEEEE------EESSEEEEEEEETTEEEEEEEESSSG----------GGGGGGGG
T ss_pred EEEEEEECCCccchHHHHHHhhhccccccC------cccccccceeeeCcEEEEEEeccccc----------ccccccee
Confidence 468999999999999999999876543221 35556667777899999999999987 33344556
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHH--HhcC---CCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAES--LMLG---FGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~--~~~~---~~~~i~ 271 (607)
++..+|++|||+|+++.....+ .++.+.+... ..+.|+++++||+|+...-. .++....+ ..+. ...++.
T Consensus 78 y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~--~~~i~~~l~l~~l~~~~~~~v~~ 155 (175)
T PF00025_consen 78 YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS--EEEIKEYLGLEKLKNKRPWSVFS 155 (175)
T ss_dssp GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST--HHHHHHHTTGGGTTSSSCEEEEE
T ss_pred eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch--hhHHHhhhhhhhcccCCceEEEe
Confidence 7889999999999997543332 2233444322 34789999999999876422 22222111 1221 114689
Q ss_pred eecCCCCChHHHHHHhccc
Q 007334 272 ISAETGLGMTELYEALRPS 290 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~ 290 (607)
+||.+|+|+.+.+++|.+.
T Consensus 156 ~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 156 CSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EBTTTTBTHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHhc
Confidence 9999999999999998764
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-15 Score=157.43 Aligned_cols=153 Identities=16% Similarity=0.116 Sum_probs=103.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+|||..|||||||+-+|+...+ +...|.. ..+-.....+........++||+.-. +........
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef--~~~VP~r-l~~i~IPadvtPe~vpt~ivD~ss~~----------~~~~~l~~E 76 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEF--VDAVPRR-LPRILIPADVTPENVPTSIVDTSSDS----------DDRLCLRKE 76 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhc--ccccccc-CCccccCCccCcCcCceEEEeccccc----------chhHHHHHH
Confidence 5899999999999999999998765 2222210 11111223333356678999998544 233445678
Q ss_pred hhccCEEEEEEecCCCCCHhHH--HHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHH----HHHHHHhcCCCCcEE
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAG----AAAESLMLGFGDPIA 271 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~----~~~~~~~~~~~~~i~ 271 (607)
++.||++++|++++++.+.... .|+-.+++.. .+.|+|+|+||+|+........+. .+..+.. ....++
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~E--iEtcie 154 (625)
T KOG1707|consen 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAE--IETCIE 154 (625)
T ss_pred HhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHH--HHHHHh
Confidence 8999999999999887665543 2445556654 579999999999998765442222 2222222 224689
Q ss_pred eecCCCCChHHHHHHhc
Q 007334 272 ISAETGLGMTELYEALR 288 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~ 288 (607)
+||++-.++.|+|..-.
T Consensus 155 cSA~~~~n~~e~fYyaq 171 (625)
T KOG1707|consen 155 CSALTLANVSELFYYAQ 171 (625)
T ss_pred hhhhhhhhhHhhhhhhh
Confidence 99999999988876543
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=138.42 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=100.3
Q ss_pred EecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh
Q 007334 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA 202 (607)
Q Consensus 125 ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~ 202 (607)
++|.+|+|||||+|+|++.... ...... +..+........ .+..+.+|||||+. .........+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYET--TIIDFYSKTIEVDGKKVKLQIWDTAGQE----------RFRSLRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-Cccccc--chhheeeEEEEECCEEEEEEEEecCChH----------HHHhHHHHHhc
Confidence 5899999999999999987642 111111 222222222222 36789999999987 33334466788
Q ss_pred ccCEEEEEEecCCCCCHhHHHHH---HHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 203 KTQFAIFMIDVRSGLHPLDLEVG---KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 203 ~ad~vl~VvD~s~~~~~~~~~~~---~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
.+|++++|+|++++....+.... ........+.|+++|+||+|+.....................+++++||.++.|
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGEN 147 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 99999999999987665553321 111222457999999999998865432222112223333344789999999999
Q ss_pred hHHHHHHhc
Q 007334 280 MTELYEALR 288 (607)
Q Consensus 280 i~eL~~~i~ 288 (607)
+++++++|.
T Consensus 148 i~~~~~~l~ 156 (157)
T cd00882 148 VEELFEELA 156 (157)
T ss_pred hHHHHHHHh
Confidence 999999875
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-16 Score=157.03 Aligned_cols=143 Identities=28% Similarity=0.415 Sum_probs=98.9
Q ss_pred HhhccCEEEEEEecCCCC-CHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.+.++|.+++|+|+.++. +... +.+|+... ..++|+++|+||+|+..... ...........++ +++++||++|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~--ldr~L~~~~~~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~-~v~~vSA~~g 149 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRL--LDRYLVAAEAAGIEPVIVLTKADLLDDEE--EELELVEALALGY-PVLAVSAKTG 149 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHH--HHHHHHHHHHcCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCC-eEEEEECCCC
Confidence 478899999999999876 4333 23344321 23789999999999975411 1112222344566 7899999999
Q ss_pred CChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCC-
Q 007334 278 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA- 356 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~- 356 (607)
.|+++|++.|.. ..++++|++|||||||+|.|++.....++..+
T Consensus 150 ~gi~~L~~~L~~-----------------------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~ 194 (287)
T cd01854 150 EGLDELREYLKG-----------------------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISE 194 (287)
T ss_pred ccHHHHHhhhcc-----------------------------------ceEEEECCCCCCHHHHHHHHhchhhccccceec
Confidence 999998876542 25899999999999999999987654443332
Q ss_pred ------CceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 357 ------GLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 357 ------gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+||++.....+... ..++||||+.++
T Consensus 195 ~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 195 KLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred cCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 36666543333212 369999998665
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=147.99 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=104.4
Q ss_pred EEEEecCCCCchhHHHHHhhcccee------ee--c-----cCCCCc----------------------eeeeeEEEEee
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREA------LV--Y-----NTPDDH----------------------VTRDIREGLAK 166 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~------~v--~-----~~~~~~----------------------~T~~~~~~~~~ 166 (607)
+|+++|..++|||||+++|+..... .. . ...|.+ .+.+......+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4899999999999999999853220 00 0 000100 00000012234
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh--ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCC
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA--KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKC 244 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~--~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~ 244 (607)
..+..+.++||||+. ++...+...+. .+|++++|+|+..+....+.+++.++... ++|+++|+||+
T Consensus 81 ~~~~~i~liDtpG~~----------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~--~ip~ivvvNK~ 148 (224)
T cd04165 81 KSSKLVTFIDLAGHE----------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL--NIPVFVVVTKI 148 (224)
T ss_pred eCCcEEEEEECCCcH----------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEECc
Confidence 467889999999987 45555555554 78999999999999999998899999887 78999999999
Q ss_pred CcccCCcCcHHHHHH----HHHhcC-------------------------CCCcEEeecCCCCChHHHHHHhc
Q 007334 245 ESLHNGTGSLAGAAA----ESLMLG-------------------------FGDPIAISAETGLGMTELYEALR 288 (607)
Q Consensus 245 D~~~~~~~~~~~~~~----~~~~~~-------------------------~~~~i~iSA~~g~gi~eL~~~i~ 288 (607)
|+.+... ...... .+...| ..+++++||.+|+|+++|.+.|.
T Consensus 149 D~~~~~~--~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 149 DLAPANI--LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred cccCHHH--HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 9875321 111111 111111 22679999999999999998775
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.7e-16 Score=154.98 Aligned_cols=142 Identities=17% Similarity=0.135 Sum_probs=103.0
Q ss_pred EEEEecCCCCchhHHHHHhhccce-----eeec------------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRRE-----ALVY------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~-----~~v~------------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
+|+|+|++|+|||||+|+|+.... ..+. ...+ +|.+.....+.+.+.++.+|||||+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg--iti~~~~~~~~~~~~~i~liDTPG~~--- 75 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERG--ITIQSAATTCFWKDHRINIIDTPGHV--- 75 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCC--cCeeccEEEEEECCEEEEEEECCCcH---
Confidence 489999999999999999974211 1111 1223 77888888888999999999999987
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM- 263 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~- 263 (607)
++...+..++..+|++++|+|+..+....+..+.+.+... ++|+++++||+|+.................
T Consensus 76 -------df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~--~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 76 -------DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY--NVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred -------HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 4556677889999999999999999888887777777766 789999999999875322111122222222
Q ss_pred cCCCCcEEeecCCC
Q 007334 264 LGFGDPIAISAETG 277 (607)
Q Consensus 264 ~~~~~~i~iSA~~g 277 (607)
..+...+|+||..+
T Consensus 147 ~~~~~~~Pisa~~~ 160 (270)
T cd01886 147 NPVPLQLPIGEEDD 160 (270)
T ss_pred CceEEEeccccCCC
Confidence 12234578887633
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=163.03 Aligned_cols=143 Identities=22% Similarity=0.258 Sum_probs=98.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC------Cce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE------DRV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~------~~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
+.++|+++|++|+|||||+++|++. ... ......|+|.+.....++.++.++.|+||||+.++
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY-- 88 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH--
Confidence 4589999999999999999999962 111 11225689999877777778889999999997432
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE-EEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV-VIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
...+...+..+|++++|+|+.++ .....++|.+ +|+||+|+.+.. +.++.+...+...
T Consensus 89 --------~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~---~~~~~~~~ei~~~ 157 (396)
T PRK12735 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE---ELLELVEMEVREL 157 (396)
T ss_pred --------HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchH---HHHHHHHHHHHHH
Confidence 13344667789999999999874 2234578866 579999997532 2233332233222
Q ss_pred HHhhCCC-CCCCCEEEcccCCCCC
Q 007334 457 IQTVIPQ-VTGIPVVFTSALEGRG 479 (607)
Q Consensus 457 ~~~~~~~-~~~~~~v~iSA~~g~g 479 (607)
+.. +.. ...++++++||++|.|
T Consensus 158 l~~-~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 158 LSK-YDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHH-cCCCcCceeEEecchhcccc
Confidence 221 111 1247999999999975
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=162.42 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=114.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee------e---------eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA------L---------VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~------~---------v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++++|||||+++|++.... . .....| +|.+.....+..++..+.+|||||+.
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg--~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERG--ITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcC--ccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 468999999999999999999863110 0 011334 78888766666677889999999987
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCc--HH-HHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGS--LA-GAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~--~~-~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...++.+++.++... ++| +|+|+||+|+...+... .. +....
T Consensus 87 -------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 87 -------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 5556667777899999999999999888888888888776 678 67899999987432211 11 12222
Q ss_pred HHhcCC----CCcEEeecCCCC--------ChHHHHHHhccchH
Q 007334 261 SLMLGF----GDPIAISAETGL--------GMTELYEALRPSVE 292 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~--------gi~eL~~~i~~~l~ 292 (607)
+...++ .+++++||.+|. ++.+|++.|.+.++
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 333444 267999999983 56777777665543
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=167.07 Aligned_cols=156 Identities=18% Similarity=0.265 Sum_probs=96.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCC-CceeeeEEEEEEEc------------------CeEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQ------------------GRTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~------------------~~~~~liDTpG~~~ 384 (607)
+.-|+++|++|+|||||+|+|++... ....+ |+|++.....+.++ ...+.||||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 34699999999999999999998632 22333 35554222222211 12488999999643
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcC---chHHHH---H
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQ---NSALYK---R 448 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~---~ 448 (607)
+ ..++ ..++..+|++++|+|++++ .....++|+++|+||+|+..... ....++ +
T Consensus 82 f---------~~l~-~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 82 F---------TNLR-KRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred H---------HHHH-HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 3 2222 3466789999999999874 22345899999999999974210 000000 0
Q ss_pred ----HHH-------hcHHHHHhh---------C-CCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 449 ----VKE-------AVPQEIQTV---------I-PQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 449 ----~~~-------~~~~~~~~~---------~-~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.. .+..++.+. . .....++++++||++|+|+++|++.+....
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 000 000111110 0 122357999999999999999998876543
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=169.78 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=104.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcCC--ceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~--~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
-|+++|++++|||||+++|+|.+ +.......|+|.+.....+.. ++..+.||||||+.++ . ..+...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f---------i-~~m~~g 71 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF---------L-SNMLAG 71 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH---------H-HHHHHH
Confidence 48999999999999999999853 333445569999877666554 5678899999996433 1 234566
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
+..+|++++|+|++++ .....++| +|+|+||+|+.+... ++.+.+.+...+... .....|+++
T Consensus 72 ~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~----~~~v~~ei~~~l~~~--~~~~~~ii~ 145 (614)
T PRK10512 72 VGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEAR----IAEVRRQVKAVLREY--GFAEAKLFV 145 (614)
T ss_pred hhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHH----HHHHHHHHHHHHHhc--CCCCCcEEE
Confidence 7789999999999875 12234666 579999999975421 222222222222111 112478999
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~~~ 490 (607)
+||++|.|+++|++.|...
T Consensus 146 VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 146 TAATEGRGIDALREHLLQL 164 (614)
T ss_pred EeCCCCCCCHHHHHHHHHh
Confidence 9999999999999888754
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=154.52 Aligned_cols=161 Identities=22% Similarity=0.266 Sum_probs=109.2
Q ss_pred EEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee------------------------CCeeEEEecCC
Q 007334 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------------------GDLRFKVLDSA 178 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~------------------------~~~~~~liDTp 178 (607)
|+|||.||||||||||+|++... .+.+.|+ +|.+...+.... ...++.+||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pf--tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPF--TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCC--ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECC
Confidence 58999999999999999998764 5778887 888887765543 23579999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC------------CC-HhHH-----HHHHH-------------
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG------------LH-PLDL-----EVGKW------------- 227 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~------------~~-~~~~-----~~~~~------------- 227 (607)
|+......+. ......+..+++||+++||+|++.. .. ..+. ++..|
T Consensus 78 Glv~ga~~~~---glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~ 154 (318)
T cd01899 78 GLVPGAHEGK---GLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIV 154 (318)
T ss_pred CCCCCccchh---hHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9974432211 2334557789999999999999741 01 1111 11111
Q ss_pred -------------------------------HHh----------------------hCCCCcEEEEecCCCcccCCcCcH
Q 007334 228 -------------------------------LRK----------------------HAPQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 228 -------------------------------l~~----------------------~~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
|++ ....+|+|+|+||+|+..... .
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~--~ 232 (318)
T cd01899 155 RKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN--N 232 (318)
T ss_pred HHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH--H
Confidence 100 012479999999999754211 1
Q ss_pred HHHHHHHHhcCCCCcEEeecCCCCChHHHHH-HhccchHH
Q 007334 255 AGAAAESLMLGFGDPIAISAETGLGMTELYE-ALRPSVED 293 (607)
Q Consensus 255 ~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~-~i~~~l~~ 293 (607)
... ........+++++||+.+.|+++|.+ .+.+.+++
T Consensus 233 ~~~--l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 233 ISK--LRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred HHH--HHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 111 11223345789999999999999998 58887764
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-15 Score=133.20 Aligned_cols=157 Identities=17% Similarity=0.125 Sum_probs=115.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|.|+|..|+||||++++|.+.....++ -|.-.....+.+.+.++++||.+|+- ...+.+..
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~------pt~gf~Iktl~~~~~~L~iwDvGGq~----------~lr~~W~n 79 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTIS------PTLGFQIKTLEYKGYTLNIWDVGGQK----------TLRSYWKN 79 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccC------CccceeeEEEEecceEEEEEEcCCcc----------hhHHHHHH
Confidence 468999999999999999999998643332 35556777788899999999999998 56778889
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhh-CCCCcEEEEecCCCcccCCcC---cHHHHHHHH-HhcCCCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKH-APQIKPIVAMNKCESLHNGTG---SLAGAAAES-LMLGFGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~---~~~~~~~~~-~~~~~~~~i~i 272 (607)
|++.+|++|+|+|.++....++ .++.+.|.+. ..+.|++++.||.|+...-.. .......+. .... .+.+-|
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~c 158 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKC 158 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEE
Confidence 9999999999999998766665 2233344322 336899999999999843211 111111122 2222 267999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||.+|+++.+-+++++..+..
T Consensus 159 s~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 159 SAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred eccccccHHHHHHHHHHHHHH
Confidence 999999999999998876644
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-15 Score=160.70 Aligned_cols=143 Identities=24% Similarity=0.298 Sum_probs=97.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC------Ccee---------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE------DRVL---------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~------~~~~---------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++|+|||||+++|++. .... .....|+|++.....++.++.++.++||||+.++
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f-- 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY-- 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch--
Confidence 4588999999999999999999732 2111 2234799999988888888889999999997543
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
...+...+..+|++++|+|+.++ .....++| +|+++||||+.+.. +.++.+...+.+.
T Consensus 138 --------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~---~~~~~i~~~i~~~ 206 (447)
T PLN03127 138 --------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDE---ELLELVEMELREL 206 (447)
T ss_pred --------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHH---HHHHHHHHHHHHH
Confidence 12333455679999999999865 23346889 57899999998532 2223232222222
Q ss_pred HHhhCCC-CCCCCEEEcccC---CCCC
Q 007334 457 IQTVIPQ-VTGIPVVFTSAL---EGRG 479 (607)
Q Consensus 457 ~~~~~~~-~~~~~~v~iSA~---~g~g 479 (607)
+. .+.. ...+|++++||. +|.|
T Consensus 207 l~-~~~~~~~~vpiip~Sa~sa~~g~n 232 (447)
T PLN03127 207 LS-FYKFPGDEIPIIRGSALSALQGTN 232 (447)
T ss_pred HH-HhCCCCCcceEEEeccceeecCCC
Confidence 21 1111 235789999886 4555
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=171.89 Aligned_cols=152 Identities=20% Similarity=0.232 Sum_probs=109.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeecc----------CCC--------------------CceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYN----------TPD--------------------DHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~----------~~~--------------------~~~T~~~~~~~~~~~~ 169 (607)
..+|+|+|++|+|||||+|+|+.....++.. ..| .++|.+..+..+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 4579999999999999999999755433311 111 2267777777888888
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
.++.+|||||+. ++.......+..+|++++|+|+..+...++.+...++.... ..++|+|+||+|+...
T Consensus 104 ~~~~liDtPG~~----------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~-~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 104 RKFIVADTPGHE----------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLG-IRHVVLAVNKMDLVDY 172 (632)
T ss_pred ceEEEEECCChH----------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhC-CCeEEEEEEecccccc
Confidence 999999999986 34444555788999999999999998877766666666552 3578899999999752
Q ss_pred CcCcHHHHHHH----HHhcCCC--CcEEeecCCCCChHH
Q 007334 250 GTGSLAGAAAE----SLMLGFG--DPIAISAETGLGMTE 282 (607)
Q Consensus 250 ~~~~~~~~~~~----~~~~~~~--~~i~iSA~~g~gi~e 282 (607)
..........+ ....++. +++++||++|.|+++
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22111212112 2345553 489999999999984
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=146.06 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=105.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecC-CCCceeeeEEEEEEEcCeEEEEEecCCCcccccc-cCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGP-EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~-~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~ 402 (607)
++|+++|+||||||||+|+|+|...+.+.. .+++|.++......+++.++.++||||+.+.... .............+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 379999999999999999999987665443 5678999888888889999999999999776321 11111112222233
Q ss_pred HhhccEEEEEeccchh--------hHHh------cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV--------RAVE------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------~~~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..++|++|+|+|+... ..+. ...++|+|+|++|........+..... ...+......+.+ .
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~----~~~l~~l~~~c~~-r 155 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENS----CEALKRLLEKCGG-R 155 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhc----cHHHHHHHHHhCC-e
Confidence 4578999999998764 1111 126899999999987654322222211 1222222222222 2
Q ss_pred EEEc-----ccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFT-----SALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~i-----SA~~g~gv~~l~~~i~~~~~~ 493 (607)
++.. |+..+.++.+|++.|.+...+
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2222 356778888888777776554
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=160.35 Aligned_cols=143 Identities=21% Similarity=0.238 Sum_probs=96.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC------Cce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE------DRV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~------~~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
+.++|+++|++++|||||+++|++. ... ......|+|++.....++.++.++.||||||+.++.
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~- 89 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV- 89 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH-
Confidence 4588999999999999999999842 111 112247999998877777778899999999975431
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE-EEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV-VIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
..+...+..+|++++|+|++++ .....++|.+ +|+||||+.+.. +.++.+.+.+...
T Consensus 90 ---------~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~---~~~~~~~~~i~~~ 157 (394)
T TIGR00485 90 ---------KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE---ELLELVEMEVREL 157 (394)
T ss_pred ---------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHH---HHHHHHHHHHHHH
Confidence 2234556689999999999874 2334578865 689999997542 2222222222222
Q ss_pred HHhhCCCCCCCCEEEcccCCCC
Q 007334 457 IQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
+...-.....+|++++||++|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHhcCCCccCccEEECcccccc
Confidence 2211111123799999999985
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.5e-15 Score=154.49 Aligned_cols=86 Identities=30% Similarity=0.297 Sum_probs=66.5
Q ss_pred EEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE------------------------cCeEEEEEecCCC
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY------------------------QGRTVYLVDTAGW 382 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~------------------------~~~~~~liDTpG~ 382 (607)
|+++|.||||||||+|+|++.. +.++++|++|+++..+...+ .+.++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999764 68899999999988765543 2247899999998
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
..... .+ ..+ ..+.+.+++.||++++|+|++
T Consensus 80 v~ga~-~~-~gl-g~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAH-EG-KGL-GNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCcc-ch-hhH-HHHHHHHHHHCCEEEEEEeCC
Confidence 65421 11 111 234567899999999999997
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=161.89 Aligned_cols=151 Identities=19% Similarity=0.249 Sum_probs=108.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeec--------------------------cC----CCCceeeeeEEEEeeeCCee
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVY--------------------------NT----PDDHVTRDIREGLAKLGDLR 171 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~--------------------------~~----~~~~~T~~~~~~~~~~~~~~ 171 (607)
+|+++|++++|||||+++|+.....+.. +. .....|.+.....+.+.+.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 6999999999999999999743221111 00 00236788888888888999
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCc
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGT 251 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~ 251 (607)
+.+|||||+. ++...+...+..+|++++|+|+..+...++.+....+.... ..++|+|+||+|+.....
T Consensus 82 ~~liDtPGh~----------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~-~~~iivviNK~D~~~~~~ 150 (406)
T TIGR02034 82 FIVADTPGHE----------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG-IRHVVLAVNKMDLVDYDE 150 (406)
T ss_pred EEEEeCCCHH----------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC-CCcEEEEEEecccccchH
Confidence 9999999987 55555667789999999999999998888777666666552 246889999999975322
Q ss_pred CcHHHHHHH----HHhcCCC--CcEEeecCCCCChHHH
Q 007334 252 GSLAGAAAE----SLMLGFG--DPIAISAETGLGMTEL 283 (607)
Q Consensus 252 ~~~~~~~~~----~~~~~~~--~~i~iSA~~g~gi~eL 283 (607)
......... ....++. +++++||.+|+|++++
T Consensus 151 ~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 151 EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 111111111 2334443 5799999999999864
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-15 Score=163.05 Aligned_cols=151 Identities=25% Similarity=0.284 Sum_probs=103.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCcee------------------------------ecCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVL------------------------------VGPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~------------------------------~~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++++|||||+++|+...... .....|+|.|.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 35789999999999999999998532111 112458999999888999999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh---------h----HHhcC-CcEEEEEeCccCCC
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------R----AVEEG-RGLVVIVNKMDLLS 438 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~---------~----~~~~~-~p~ivv~NK~Dl~~ 438 (607)
.+.||||||+.++. ..+..++..+|++++|+|++++ . ....+ .|+|+|+||+|+.+
T Consensus 86 ~i~iiDtpGh~~f~----------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 86 EVTIVDCPGHRDFI----------KNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred EEEEEECCCHHHHH----------HHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 99999999964331 2234456789999999999875 0 11123 57899999999975
Q ss_pred CcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 439 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
.. .+.++...+.+...+...-......+++++||++|.|+.+++.
T Consensus 156 ~~--~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~ 200 (426)
T TIGR00483 156 YD--EEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE 200 (426)
T ss_pred cc--HHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence 32 1223333333322222111111247899999999999987553
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=159.88 Aligned_cols=144 Identities=22% Similarity=0.239 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC------ce---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED------RV---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~------~~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++++|||||+++|++.. .. ......|+|++.....+..++.++.++||||+.++
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f-- 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY-- 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH--
Confidence 35889999999999999999999631 11 11125799999887777778889999999997432
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE-EEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV-VIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i-vv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
...+...+..+|++++|+|+.++ .....++|.+ +++||+|+.+.. +.++.+...+...
T Consensus 89 --------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~---~~~~~~~~~i~~~ 157 (396)
T PRK00049 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDE---ELLELVEMEVREL 157 (396)
T ss_pred --------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchH---HHHHHHHHHHHHH
Confidence 12334567789999999999875 2334688976 589999997531 2233333333322
Q ss_pred HHhhCCCCCCCCEEEcccCCCCC
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRG 479 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~g 479 (607)
+...-.....+|++++||++|.+
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HHhcCCCccCCcEEEeecccccC
Confidence 22211112358999999999864
|
|
| >KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-16 Score=137.96 Aligned_cols=147 Identities=22% Similarity=0.235 Sum_probs=109.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.+++.++|++-||||+|+..++....+.. .-|.+.+|.....++. +| .+++||||||+.+++ .-+.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfael-sdptvgvdffarlie~~pg~riklqlwdtagqerfr----------sitk 76 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAEL-SDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFR----------SITK 76 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCccccc-CCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHH----------HHHH
Confidence 47899999999999999999996654433 3455566655544444 23 367899999976553 3466
Q ss_pred HHHhhccEEEEEeccchhhH--------------Hh-cCC-cEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVRA--------------VE-EGR-GLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~~--------------~~-~~~-p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.|++++-++++|+|.++... .. ..+ -+.+|+.|+||... +++..+.++.++..
T Consensus 77 syyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq-----------RqVt~EEaEklAa~ 145 (213)
T KOG0091|consen 77 SYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ-----------RQVTAEEAEKLAAS 145 (213)
T ss_pred HHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh-----------ccccHHHHHHHHHh
Confidence 88999999999999998611 11 223 35789999999865 34455566666667
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+..++++||++|.||++.|.-+.+.+.
T Consensus 146 hgM~FVETSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 146 HGMAFVETSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred cCceEEEecccCCCcHHHHHHHHHHHHH
Confidence 7899999999999999999998877654
|
|
| >KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=155.98 Aligned_cols=156 Identities=22% Similarity=0.305 Sum_probs=117.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc-CcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~~~i 403 (607)
..+.+||.||||||||+|.++.. ...+.++++||...+.+++++.-..++++||||+.+...+. ...++....++.++
T Consensus 169 rTlllcG~PNVGKSSf~~~vtra-dvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRA-DDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred CeEEEecCCCCCcHhhccccccc-ccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 57899999999999999999865 47889999999999999999999999999999998873222 12223333445555
Q ss_pred hhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+. +||+++|.++- ...-.++|+|+|+||+|+...++..+.-+++.+.+ ....+++
T Consensus 248 ra--aVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~--------~~~~~v~ 317 (620)
T KOG1490|consen 248 RS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTI--------IDDGNVK 317 (620)
T ss_pred hh--hheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHH--------HhccCce
Confidence 43 58888898874 22346899999999999998766554433333222 2223589
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++.+|..+.+|+.++-....+.+
T Consensus 318 v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 318 VVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred EEEecccchhceeeHHHHHHHHH
Confidence 99999999999999877665543
|
|
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=159.73 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=112.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc------cee----e-----eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR------REA----L-----VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~------~~~----~-----v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+++|++. ... . .....| +|.+.....+..++.++.++||||+.
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG--iT~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARG--ITINTSHVEYETANRHYAHVDCPGHA--- 86 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcC--ceEEEeeeEEcCCCcEEEEEECCCHH---
Confidence 468999999999999999999962 110 0 011334 78887766666677889999999986
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEE-EEecCCCcccCCcCc--H-HHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLHNGTGS--L-AGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~i-lV~NK~D~~~~~~~~--~-~~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...++.+.+..+... ++|.+ +|+||+|+....... . .+....
T Consensus 87 -------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred -------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 5666667788899999999999998877777776766655 67865 579999997532110 1 112222
Q ss_pred HHhcCC----CCcEEeecCCCC----------ChHHHHHHhccch
Q 007334 261 SLMLGF----GDPIAISAETGL----------GMTELYEALRPSV 291 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~----------gi~eL~~~i~~~l 291 (607)
+...++ .+++++||.+|. ++.+|++.|...+
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 333343 257999999995 5677777776554
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=166.35 Aligned_cols=152 Identities=25% Similarity=0.388 Sum_probs=106.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee---------------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL---------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~---------------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 390 (607)
.|+++|+.++|||||+++|+.....+ .....|+|.......+.|++.++.||||||+.++.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 69999999999999999998532111 11234788888888899999999999999975542
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
.....+++.+|++++|+|++++ .....++|+|+|+||+|+..... .+..+.+.+.+.. +..
T Consensus 79 ------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~-~~v~~ei~~l~~~-~g~- 149 (594)
T TIGR01394 79 ------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARP-DEVVDEVFDLFAE-LGA- 149 (594)
T ss_pred ------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCH-HHHHHHHHHHHHh-hcc-
Confidence 2345678899999999999875 33456899999999999865421 1222222221110 000
Q ss_pred CCCCCCCCEEEcccCCCC----------CHHHHHHHHHHH
Q 007334 461 IPQVTGIPVVFTSALEGR----------GRIAVMHQVIDT 490 (607)
Q Consensus 461 ~~~~~~~~~v~iSA~~g~----------gv~~l~~~i~~~ 490 (607)
......+|++++||++|. |+..+|+.+.+.
T Consensus 150 ~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~ 189 (594)
T TIGR01394 150 DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRH 189 (594)
T ss_pred ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence 011235799999999996 677777766654
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-15 Score=164.14 Aligned_cols=142 Identities=25% Similarity=0.362 Sum_probs=101.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee---------------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL---------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK 389 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~---------------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 389 (607)
.+|+++|+.++|||||+++|+.....+ .....|+|.+.....+.+++..+.||||||+.++.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~--- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG--- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH---
Confidence 579999999999999999999632221 12346888888888889999999999999976552
Q ss_pred CcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 390 GPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 390 ~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
..+..+++.+|++|+|+|++++ .....++|.++++||+|+..... ....+.+.+.+.. +.
T Consensus 83 -------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~-~~vl~ei~~l~~~-l~- 152 (607)
T PRK10218 83 -------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARP-DWVVDQVFDLFVN-LD- 152 (607)
T ss_pred -------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCch-hHHHHHHHHHHhc-cC-
Confidence 2345678899999999999875 33457899999999999875422 1222222221110 00
Q ss_pred hCCCCCCCCEEEcccCCCCC
Q 007334 460 VIPQVTGIPVVFTSALEGRG 479 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~g 479 (607)
.......+|++++||++|.|
T Consensus 153 ~~~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 153 ATDEQLDFPIVYASALNGIA 172 (607)
T ss_pred ccccccCCCEEEeEhhcCcc
Confidence 01112357999999999985
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=160.61 Aligned_cols=145 Identities=22% Similarity=0.223 Sum_probs=102.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce---------------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV---------------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~---------------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++++|||||+++|++.... ......|+|.+.....+++++..+.||||||+.++.
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~- 158 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV- 158 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH-
Confidence 3578999999999999999999953111 123446889998888888889999999999975431
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
..+...+..+|++++|+|+.++ .....++| +|+++||+|+.+.+ +.++.+.+++...
T Consensus 159 ---------~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~---~~~~~i~~~i~~~ 226 (478)
T PLN03126 159 ---------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDE---ELLELVELEVREL 226 (478)
T ss_pred ---------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHH---HHHHHHHHHHHHH
Confidence 2345666789999999999876 23346888 78899999997632 2233333333333
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGR 480 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv 480 (607)
+...-.....+|++++||.+|.++
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHhcCCCcCcceEEEEEccccccc
Confidence 322111124689999999999765
|
|
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=161.36 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=105.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee------------------------c------cCCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV------------------------Y------NTPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v------------------------~------~~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++++|||||+++|+.....+. . ...+ +|.|.....+.+++
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg--~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERG--VTIDVAHWKFETDK 84 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcC--ceEEEEEEEEccCC
Confidence 46899999999999999999985321111 0 1223 88999888888899
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC---CHhHHHHHHHHHhhCCCCcEEEEecCCCc
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL---HPLDLEVGKWLRKHAPQIKPIVAMNKCES 246 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~---~~~~~~~~~~l~~~~~~~p~ilV~NK~D~ 246 (607)
..+.+|||||+. ++.......+..+|++++|+|++++. ..+..+...+++.. ...|+|+|+||+|+
T Consensus 85 ~~i~iiDtpGh~----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl 153 (426)
T TIGR00483 85 YEVTIVDCPGHR----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDS 153 (426)
T ss_pred eEEEEEECCCHH----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhc
Confidence 999999999987 45555666788999999999999883 33333333333333 23578999999999
Q ss_pred ccCCcCcH----HHHHHHHHhcCC----CCcEEeecCCCCChHHHH
Q 007334 247 LHNGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTELY 284 (607)
Q Consensus 247 ~~~~~~~~----~~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~ 284 (607)
........ .+....+...++ .+++++||++|.|++++.
T Consensus 154 ~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 154 VNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred cCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 74222111 122223334443 257999999999998744
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >KOG0395 consensus Ras-related GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=142.31 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=124.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||+|..++++..+ +.+... +..|.+...+.+++ ..+.|+||+|+. ++..+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~p--tied~y~k~~~v~~~~~~l~ilDt~g~~----------~~~~~~ 68 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF--VEDYDP--TIEDSYRKELTVDGEVCMLEILDTAGQE----------EFSAMR 68 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc--ccccCC--CccccceEEEEECCEEEEEEEEcCCCcc----------cChHHH
Confidence 35899999999999999999998876 333333 55566666666654 467899999976 455556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|+.++|+++++..++++.. +.+.+.+. ....|+++|+||+|+...+.+..++....+...+. .++++||
T Consensus 69 ~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~-~f~E~Sa 147 (196)
T KOG0395|consen 69 DLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGC-AFIETSA 147 (196)
T ss_pred HHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCC-cEEEeec
Confidence 67889999999999999988888743 44444222 33579999999999998777777777777777777 4899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
+...+++++|..|...+..
T Consensus 148 k~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 148 KLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcCHHHHHHHHHHHHHh
Confidence 9999999999999876643
|
|
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=162.83 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=107.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccC----------CC--------------------CceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNT----------PD--------------------DHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~----------~~--------------------~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+++|+.....+.... .| ...|.+..+..+.+++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 57899999999999999999985533222100 11 1256777777777888
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
.++.+|||||+. ++...+...+..+|++++|+|+..+...++.+....+.... ..|+|+|+||+|+...
T Consensus 107 ~~i~~iDTPGh~----------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 107 RKFIIADTPGHE----------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-IKHLVVAVNKMDLVDY 175 (474)
T ss_pred cEEEEEECCCcH----------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-CCceEEEEEeeccccc
Confidence 899999999976 45445555679999999999999988776655545554442 2478999999999753
Q ss_pred CcCcHHHHHHHH----HhcC---CCCcEEeecCCCCChHHHH
Q 007334 250 GTGSLAGAAAES----LMLG---FGDPIAISAETGLGMTELY 284 (607)
Q Consensus 250 ~~~~~~~~~~~~----~~~~---~~~~i~iSA~~g~gi~eL~ 284 (607)
...........+ ...+ ..+++++||++|.|++++.
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 221122222222 2233 2367999999999998754
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-15 Score=136.45 Aligned_cols=155 Identities=23% Similarity=0.259 Sum_probs=97.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcC-CceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc-CcchhHH--HHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE-DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSV--MQSRK 401 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~-~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~--~~~~~ 401 (607)
.|+++|.+|+|||||+|.|++. .....++.+++|.+.... ..+ ..+.+|||||+....... ..+.+.. .....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--Ecc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 3899999999999999999943 334566777777664332 223 388999999975431110 1111111 11112
Q ss_pred HHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 402 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
.....+++++|+|.+.. .....+.|+++|+||+|+............+ ...+.. .....++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~----~~~l~~---~~~~~~~~~ 150 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEI----KKELKL---FEIDPPIIL 150 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHH----HHHHHh---ccCCCceEE
Confidence 22346789999998753 1223468999999999997543221111111 111111 234568999
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~~~ 490 (607)
+||+++.|+.++++.+.+.
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 151 FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EecCCCCCHHHHHHHHHHh
Confidence 9999999999999888653
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-15 Score=141.25 Aligned_cols=143 Identities=16% Similarity=0.138 Sum_probs=95.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-------CCeeEEEecCCCCccccCchhHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-------GDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-------~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
+|+++|.++||||||++++++..+.. . +..++..+.....+.+ ....+.||||+|.+ ++.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~--~-~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e----------~~~ 68 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG--R-PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE----------SVK 68 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--C-CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch----------hHH
Confidence 69999999999999999999876421 1 1111222333333333 23578999999998 566
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--------------------CCCCcEEEEecCCCcccCCcCc
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--------------------APQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--------------------~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
.....++..+|++|+|+|++++.+.+... |...+... ..+.|+++|+||+|+...+...
T Consensus 69 ~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~ 148 (202)
T cd04102 69 STRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESS 148 (202)
T ss_pred HHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccc
Confidence 66778899999999999999987777632 33223221 1368999999999997654332
Q ss_pred HHH----HHHHHHhcCCCCcEEeecCCCC
Q 007334 254 LAG----AAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 254 ~~~----~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
... ....+.+++. +.+.+++.++.
T Consensus 149 ~~~~~~~~~~ia~~~~~-~~i~~~c~~~~ 176 (202)
T cd04102 149 GNLVLTARGFVAEQGNA-EEINLNCTNGR 176 (202)
T ss_pred hHHHhhHhhhHHHhcCC-ceEEEecCCcc
Confidence 221 1223445666 56777777654
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=150.77 Aligned_cols=133 Identities=19% Similarity=0.180 Sum_probs=94.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCce-----e------------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRV-----L------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~-----~------------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 388 (607)
.|+++|++|+|||||+++|+..... . .....|+|++.....+.|++.++.+|||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 3899999999999999999742211 1 11345889999889999999999999999975442
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHH
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ 458 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
..+..+++.+|++|+|+|+.++ .....++|+++++||+|+.+.. . +.+. .++.
T Consensus 79 --------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~-~----~~~~----~~l~ 141 (270)
T cd01886 79 --------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD-F----FRVV----EQIR 141 (270)
T ss_pred --------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC-H----HHHH----HHHH
Confidence 2356788899999999999875 2334689999999999987542 1 1111 2233
Q ss_pred hhCCCCCCCCEEEcccCCC
Q 007334 459 TVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~g 477 (607)
+.+......-++|+||..+
T Consensus 142 ~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 142 EKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred HHhCCCceEEEeccccCCC
Confidence 3333222334678888644
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-15 Score=154.94 Aligned_cols=154 Identities=23% Similarity=0.307 Sum_probs=123.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.|.|+++|+-..|||||+..+-+.+.+ .....| .|.......+..+ ...+.++||||++ .|..+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGG--ITQhIGA~~v~~~~~~~~~itFiDTPGHe----------AFt~m 71 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGG--ITQHIGAYQVPLDVIKIPGITFIDTPGHE----------AFTAM 71 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccc-cccCCc--eeeEeeeEEEEeccCCCceEEEEcCCcHH----------HHHHH
Confidence 589999999999999999999877653 222333 8999988888874 4689999999998 55555
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC--------C
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG--------D 268 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~--------~ 268 (607)
...-..-+|++++|+|+.++..++..+-.+.++.. +.|+++++||+|..+... .....+....|+. .
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a--~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~ 146 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAA--GVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVI 146 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC--CCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceE
Confidence 55666789999999999999999999888888887 899999999999986432 3333444444542 4
Q ss_pred cEEeecCCCCChHHHHHHhccch
Q 007334 269 PIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
++++||++|+|+++|++.|.-..
T Consensus 147 ~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 147 FVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred EEEeeccCCCCHHHHHHHHHHHH
Confidence 58999999999999999887543
|
|
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=160.06 Aligned_cols=159 Identities=15% Similarity=0.055 Sum_probs=103.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee--eccCCCCceeeeeEEEEee--------------------------eCCee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAK--------------------------LGDLR 171 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~--v~~~~~~~~T~~~~~~~~~--------------------------~~~~~ 171 (607)
..+|+++|++|+|||||+++|++..... .....+ .|.+..+.... ..+..
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg--~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRG--ISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcC--ceeEecccccccccccccCccccccccccccccccccccccE
Confidence 3589999999999999999998642100 000112 23322211110 02467
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCC
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~ 250 (607)
+.+|||||++ ++...+...+..+|++++|+|++++. ..+..+.+..+... ...|+++|+||+|+....
T Consensus 82 i~liDtPGh~----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 82 VSFVDAPGHE----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred EEEEECCCHH----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHH
Confidence 9999999987 56666777788999999999999876 55555555555443 235789999999997532
Q ss_pred cC--cHHHHHHHHHhc---CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 251 TG--SLAGAAAESLML---GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 251 ~~--~~~~~~~~~~~~---~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.. ..++....+... +. +++++||++|+|+++|++.|...++
T Consensus 151 ~~~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 151 KALENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCC
Confidence 11 011111111111 22 6799999999999999999986553
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-15 Score=129.66 Aligned_cols=145 Identities=21% Similarity=0.216 Sum_probs=104.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCC-ceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-LTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g-tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.+|..|+|.-|||||+|+..++... ...+.|. +.++.....+++.|. +++||||+|+.+++ ..++
T Consensus 11 ifkyiiigdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagqerfr----------avtr 78 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR----------AVTR 78 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHH----------HHHH
Confidence 4788999999999999999998653 2334443 234444556666665 56799999965543 4567
Q ss_pred HHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++++|.++++|+|.+.. .....+..+++++||.||...++ +.-+..+.++...+
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrd-----------v~yeeak~faeeng 147 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRD-----------VTYEEAKEFAEENG 147 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhccc-----------CcHHHHHHHHhhcC
Confidence 889999999999999876 01123556889999999976532 22333444555678
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.-++++||++|+|+++.|-+....+
T Consensus 148 l~fle~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 148 LMFLEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred eEEEEecccccCcHHHHHHHHHHHH
Confidence 8999999999999999886655443
|
|
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-15 Score=158.08 Aligned_cols=158 Identities=17% Similarity=0.133 Sum_probs=111.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc------ceeee---------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR------REALV---------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~------~~~~v---------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+++|++. ..... ....| +|.+.....++.++.++.++||||+.
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rG--iTi~~~~~~~~~~~~~i~~iDtPGh~--- 135 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARG--ITIATAHVEYETAKRHYAHVDCPGHA--- 135 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcC--ceeeeeEEEEcCCCeEEEEEECCCcc---
Confidence 468999999999999999999732 11111 11245 88998887777788899999999987
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcCcHHH---HH-H
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTGSLAG---AA-A 259 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~~~~~---~~-~ 259 (607)
++...+...+..+|++++|+|+.++...++.+++.++... ++| +|+|+||+|+.+... ..+. .. .
T Consensus 136 -------~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~-~~~~i~~~i~~ 205 (447)
T PLN03127 136 -------DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVVFLNKVDVVDDEE-LLELVEMELRE 205 (447)
T ss_pred -------chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEeeccCCHHH-HHHHHHHHHHH
Confidence 4555555666789999999999999988888888888877 678 578899999975321 1111 11 1
Q ss_pred HHHhcCC----CCcEEeecC---CCCC-------hHHHHHHhccchH
Q 007334 260 ESLMLGF----GDPIAISAE---TGLG-------MTELYEALRPSVE 292 (607)
Q Consensus 260 ~~~~~~~----~~~i~iSA~---~g~g-------i~eL~~~i~~~l~ 292 (607)
.+...++ -+++++||. +|.| +.+|++.|.+.++
T Consensus 206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1222233 246777775 5555 6677777766543
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-15 Score=158.33 Aligned_cols=145 Identities=18% Similarity=0.113 Sum_probs=104.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc------ceee---e------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR------REAL---V------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~------~~~~---v------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|+.++|||||+++|++. .... . ....| +|.+.....+..++..+.+|||||+.
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG--~Ti~~~~~~~~~~~~~~~liDtpGh~--- 86 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG--ITINTAHVEYETENRHYAHVDCPGHA--- 86 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcC--cceeeEEEEEcCCCEEEEEEECCchH---
Confidence 468999999999999999999843 1110 0 11234 78888776666677889999999997
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEE-EEecCCCcccCCcCc---HHHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLHNGTGS---LAGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~i-lV~NK~D~~~~~~~~---~~~~~~~ 260 (607)
++...+...+..+|++++|+|+.++...++.+.+.++... ++|.+ +|+||+|+....... ..+....
T Consensus 87 -------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 87 -------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 4555666677889999999999998888887777777766 67765 689999987532111 0112223
Q ss_pred HHhcCC----CCcEEeecCCCC
Q 007334 261 SLMLGF----GDPIAISAETGL 278 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~ 278 (607)
+...++ .+++++||.+|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHhcCCCccCccEEECcccccc
Confidence 333443 367999999885
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-15 Score=156.76 Aligned_cols=158 Identities=19% Similarity=0.150 Sum_probs=114.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccce------eee---------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRRE------ALV---------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~------~~v---------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++++|||||+++|++... ... ....| +|.+.....+..++..+.++||||+.
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARG--ITINTAHVEYETEKRHYAHVDCPGHA--- 86 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcC--eEEeeeEEEEcCCCeEEEEEECCCHH---
Confidence 46899999999999999999997311 000 11334 78888776666678899999999986
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEE-EEecCCCcccCCcCc--H-HHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLHNGTGS--L-AGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~i-lV~NK~D~~~~~~~~--~-~~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...++.+++.++... ++|.+ +++||+|+....... . .+....
T Consensus 87 -------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~ 157 (396)
T PRK00049 87 -------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred -------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHH
Confidence 5666667778999999999999999888888888888776 68876 589999997522110 1 112222
Q ss_pred HHhcCC----CCcEEeecCCCC----------ChHHHHHHhccch
Q 007334 261 SLMLGF----GDPIAISAETGL----------GMTELYEALRPSV 291 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g~----------gi~eL~~~i~~~l 291 (607)
+...++ .+++++||.+|. |+..|++.|.+.+
T Consensus 158 l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred HHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 333444 267999999975 4667777776544
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-15 Score=144.46 Aligned_cols=114 Identities=18% Similarity=0.229 Sum_probs=79.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeec---cCCC-------------CceeeeeEEEEeee-----CCeeEEEecCCCC
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVY---NTPD-------------DHVTRDIREGLAKL-----GDLRFKVLDSAGL 180 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~---~~~~-------------~~~T~~~~~~~~~~-----~~~~~~liDTpG~ 180 (607)
+|+|+|.+|+|||||+++|+........ ...+ ..+|.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6999999999999999999975432210 0000 01222222222221 2467999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
. ++...+..++..+|++++|+|++++.+.....+.+.+... ++|+++|+||+|+.
T Consensus 82 ~----------~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~--~~p~iiviNK~D~~ 136 (213)
T cd04167 82 V----------NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE--GLPIVLVINKIDRL 136 (213)
T ss_pred c----------chHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccC
Confidence 8 4555667888999999999999988877665555555443 68999999999986
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=161.57 Aligned_cols=149 Identities=30% Similarity=0.366 Sum_probs=101.7
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeec--------------------------------CCCCceeeeEEEEEEE
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVG--------------------------------PEAGLTRDSVRVHFEY 369 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~--------------------------------~~~gtT~~~~~~~~~~ 369 (607)
+..++|+++|++|+|||||+++|+.....+.. ...|+|.+.....+++
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34589999999999999999999865433221 1135677877777888
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcC-CcEEEEEeCccCCC
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEG-RGLVVIVNKMDLLS 438 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~-~p~ivv~NK~Dl~~ 438 (607)
++.++.||||||+.++ . ..+...+..+|++++|+|+..+ .....+ +|+|+|+||+|+.+
T Consensus 105 ~~~~i~~iDTPGh~~f---------~-~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 105 EKRKFIIADTPGHEQY---------T-RNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred CCcEEEEEECCCcHHH---------H-HHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 8899999999996433 1 1233456789999999999865 111223 57899999999975
Q ss_pred CcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 439 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.. ...++.+.+.+..-+ +.+......+++++||++|.|++++
T Consensus 175 ~~--~~~~~~i~~~l~~~~-~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 175 YS--EEVFERIREDYLTFA-EQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ch--hHHHHHHHHHHHHHH-HhcCCCCCceEEEEEeecCCCcccc
Confidence 32 222333333332211 1222123578999999999999865
|
|
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-15 Score=158.96 Aligned_cols=150 Identities=23% Similarity=0.246 Sum_probs=105.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce------------------------------eecCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~ 372 (607)
+.++|+++|+.++|||||+.+|+..... ......|+|.+.....+++++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 3478999999999999999999752110 1112448899988888889999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.|+||||+.++. ..+...+..+|++++|+|++++ .....++| +|+++||+
T Consensus 86 ~i~lIDtPGh~~f~----------~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKm 155 (446)
T PTZ00141 86 YFTIIDAPGHRDFI----------KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKM 155 (446)
T ss_pred EEEEEECCChHHHH----------HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcc
Confidence 99999999975541 3345667789999999999863 12235776 67999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
|..........++.+.+.+...+...-.....+|++++||.+|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 954321123445555555544443321122358999999999999864
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=153.80 Aligned_cols=162 Identities=23% Similarity=0.234 Sum_probs=110.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee------------------------CCeeEEEec
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------------------GDLRFKVLD 176 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~------------------------~~~~~~liD 176 (607)
.+|+|||.||||||||||+|++.+. .+.+.|+ +|++...+.... ....+.+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f--~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D 78 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPF--TTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELID 78 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCC--cceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEE
Confidence 4799999999999999999998765 4567777 888888876542 124689999
Q ss_pred CCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC------------C-HhHHH--------------------
Q 007334 177 SAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL------------H-PLDLE-------------------- 223 (607)
Q Consensus 177 TpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~------------~-~~~~~-------------------- 223 (607)
|||+......+. ......+..++.||++++|+|+.... . ..+.+
T Consensus 79 ~aGl~~ga~~g~---glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~ 155 (396)
T PRK09602 79 VAGLVPGAHEGR---GLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEK 155 (396)
T ss_pred cCCcCCCccchh---hHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999975432221 23345567799999999999997321 1 11110
Q ss_pred -----------------------------HHHHHHhh----------------------CCCCcEEEEecCCCcccCCcC
Q 007334 224 -----------------------------VGKWLRKH----------------------APQIKPIVAMNKCESLHNGTG 252 (607)
Q Consensus 224 -----------------------------~~~~l~~~----------------------~~~~p~ilV~NK~D~~~~~~~ 252 (607)
+.++|++. ...+|+|+|+||+|.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~-- 233 (396)
T PRK09602 156 FSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAE-- 233 (396)
T ss_pred HHHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccch--
Confidence 01111110 0248999999999976321
Q ss_pred cHHHHHHHHHhcCCCCcEEeecCCCCChHH-HHHHhccchHH
Q 007334 253 SLAGAAAESLMLGFGDPIAISAETGLGMTE-LYEALRPSVED 293 (607)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e-L~~~i~~~l~~ 293 (607)
.....+...++.+++++||+++.++++ |.+.+.+.++.
T Consensus 234 ---~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 234 ---ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred ---HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 112223333566789999999999999 78888877754
|
|
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-15 Score=158.43 Aligned_cols=145 Identities=26% Similarity=0.320 Sum_probs=99.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeec--------------------------------CCCCceeeeEEEEEEEcCe
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVG--------------------------------PEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~--------------------------------~~~gtT~~~~~~~~~~~~~ 372 (607)
++|+++|++++|||||+++|+.....+.. ..-|+|+|.....+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 47999999999999999999754322111 1236788988888889999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCC-cEEEEEeCccCCCCcC
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGR-GLVVIVNKMDLLSGRQ 441 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~-p~ivv~NK~Dl~~~~~ 441 (607)
++.||||||+.++. ..+...+..+|++|+|+|+..+ .....++ ++|+|+||+|+.+..
T Consensus 81 ~~~liDtPGh~~f~----------~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~- 149 (406)
T TIGR02034 81 KFIVADTPGHEQYT----------RNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD- 149 (406)
T ss_pred EEEEEeCCCHHHHH----------HHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-
Confidence 99999999965431 1233567789999999999765 1112244 588999999997532
Q ss_pred chHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 442 NSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
...++.+.+.+..-+ +.+. ...++++++||++|.|++++
T Consensus 150 -~~~~~~i~~~~~~~~-~~~~-~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 150 -EEVFENIKKDYLAFA-EQLG-FRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred -HHHHHHHHHHHHHHH-HHcC-CCCccEEEeecccCCCCccc
Confidence 223333333332111 2222 13578999999999998754
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-15 Score=154.83 Aligned_cols=88 Identities=31% Similarity=0.306 Sum_probs=68.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE------------------------cCeEEEEEecC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY------------------------QGRTVYLVDTA 380 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~------------------------~~~~~~liDTp 380 (607)
++|++||.||||||||+|+|++.. +.++++|++|+++..+...+ ...++++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999874 57789999999998876442 12467899999
Q ss_pred CCcccccccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 381 G~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
|+.+... .+ .. ...+.+..++.||++++|+|+.
T Consensus 81 Gl~~ga~-~g-~g-lg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAH-EG-RG-LGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCcc-ch-hh-HHHHHHHHHHHCCEEEEEEeCC
Confidence 9876421 11 11 2245667899999999999996
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-15 Score=166.89 Aligned_cols=116 Identities=18% Similarity=0.170 Sum_probs=96.1
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccce-----eeecc------------CCCCceeeeeEEEEeeeCCeeEEEecCCCCc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRRE-----ALVYN------------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~-----~~v~~------------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 181 (607)
.+.+|+|+|++|+|||||+|+|+.... ..+.+ ..+ +|.+.....+.+++.++.+|||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rg--iti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERG--ITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcC--CCccceeEEEEECCEEEEEEcCCCHH
Confidence 367899999999999999999975321 11221 334 88888888899999999999999987
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
++...+..++..+|++++|+|+..+...++..++.++.+. ++|.|+++||+|+..
T Consensus 85 ----------~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~--~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 ----------DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY--GVPRIVFVNKMDRIG 139 (691)
T ss_pred ----------HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 4555678889999999999999999988888888888776 789999999999875
|
|
| >KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=126.78 Aligned_cols=149 Identities=22% Similarity=0.327 Sum_probs=109.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|.++|..|+||||++++|.+.....++|+.|.. -....+++.++.+||..|+.... .....|+
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~----Iktl~~~~~~L~iwDvGGq~~lr----------~~W~nYf 81 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQ----IKTLEYKGYTLNIWDVGGQKTLR----------SYWKNYF 81 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCCcccee----eEEEEecceEEEEEEcCCcchhH----------HHHHHhh
Confidence 589999999999999999999998755555555543 34667889999999999964332 3455788
Q ss_pred hhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++|+|+|.++. .....+.|++|++||.|+...-... .+...+ ++... ......+
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~----~i~~~~--~L~~l-~ks~~~~ 154 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLE----EISKAL--DLEEL-AKSHHWR 154 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHH----HHHHhh--CHHHh-ccccCce
Confidence 899999999999886 1123579999999999998542211 111111 12222 2345679
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++-|||.+|+++.+-++++...+.+
T Consensus 155 l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 155 LVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred EEEEeccccccHHHHHHHHHHHHHH
Confidence 9999999999999988888776543
|
|
| >KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-16 Score=138.12 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=98.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+|++++|..-||||||+-+++.. .+.-..............+.+.+. .+.||||||+.++.. .+ -
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~En-kFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHA-LG---------P 80 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVEN-KFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHA-LG---------P 80 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHh-hcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhc-cC---------c
Confidence 4589999999999999999999843 332222221122223333344444 567999999766531 11 1
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
-|+++++++|+|||.++.. .....+.++||+||+||.+.+. +..+....++..-+
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~-----------Vt~qeAe~YAesvG 149 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQ-----------VTRQEAEAYAESVG 149 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhh-----------hhHHHHHHHHHhhc
Confidence 2567899999999999861 1123567899999999976532 22222333334457
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.++++||+.+.||.++|+.+...
T Consensus 150 A~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 150 ALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred hhheecccccccCHHHHHHHHHHH
Confidence 789999999999999999988654
|
|
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=162.02 Aligned_cols=148 Identities=28% Similarity=0.415 Sum_probs=102.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee--------------ecCCCCceeeeEEEEEEEc-----CeEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL--------------VGPEAGLTRDSVRVHFEYQ-----GRTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~--------------~~~~~gtT~~~~~~~~~~~-----~~~~~liDTpG~~~ 384 (607)
..+++++|+.++|||||+++|+.....+ .....|+|.......+.|. +..+.||||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3579999999999999999998532111 1123477777665566663 46788999999866
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcH
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 454 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 454 (607)
+. ....+++..||++|+|+|++++ .....++|+|+|+||+|+..... +...+
T Consensus 87 F~----------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~-----~~v~~--- 148 (600)
T PRK05433 87 FS----------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP-----ERVKQ--- 148 (600)
T ss_pred HH----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH-----HHHHH---
Confidence 52 2244678899999999999875 22346899999999999865321 11111
Q ss_pred HHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 455 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++...+. .....++++||++|.|++++++.+.+.+
T Consensus 149 -ei~~~lg-~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 149 -EIEDVIG-IDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred -HHHHHhC-CCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 2222211 1123589999999999999999987754
|
|
| >KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-15 Score=153.12 Aligned_cols=187 Identities=19% Similarity=0.218 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
++.++....++.+|+||.++|++++.-+....+.+++.+..+.+..++++||+|+++... ......+|...++ .++.
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni-~~vf 239 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNI-PVVF 239 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHH--HHHHHHHHHhcCc-eEEE
Confidence 677888999999999999999999988888788888888766688899999999998632 2223334555555 7788
Q ss_pred eecCCC----C--ChHHHHHHhccchHHHHhh--------hhcccc-c-cCCC-C------CCCCCCCCcccccCCceEE
Q 007334 272 ISAETG----L--GMTELYEALRPSVEDYMLR--------VLNDSC-T-QNNS-S------TQDVTSPEDDESKLPLQLA 328 (607)
Q Consensus 272 iSA~~g----~--gi~eL~~~i~~~l~~~~~~--------~l~~~~-~-~~~~-~------~~~~~~~~~~~~~~~~~v~ 328 (607)
.||..- + ++.+-...... ....... .+.... . .+.. . +.-+........+..+.|+
T Consensus 240 ~SA~~at~~~~~~~~~e~~r~~d~-~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG 318 (562)
T KOG1424|consen 240 FSALAATEQLESKVLKEDRRSLDG-VSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVG 318 (562)
T ss_pred Eecccccccccccchhhhhhcccc-hhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEE
Confidence 888761 1 12211111100 0000000 000000 0 0000 0 0000001111112247899
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+||.|||||||+||+|.|.....|+.+||-|.++.+..+ ...+.|.|+||+.-.
T Consensus 319 ~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfP 372 (562)
T KOG1424|consen 319 FVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFP 372 (562)
T ss_pred eecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc---CCCceecCCCCcccc
Confidence 999999999999999999999999999999999887654 356789999998655
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=142.65 Aligned_cols=153 Identities=24% Similarity=0.225 Sum_probs=93.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee------e-------cCCCCcee------------------------eeEEEEEE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL------V-------GPEAGLTR------------------------DSVRVHFE 368 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~------~-------~~~~gtT~------------------------~~~~~~~~ 368 (607)
||+++|+.++|||||+++|+...... . .-..|.|. +.-...++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 58999999999999999998431100 0 00011111 11012344
Q ss_pred EcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh--hccEEEEEeccchh----------hHHhcCCcEEEEEeCccC
Q 007334 369 YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDL 436 (607)
Q Consensus 369 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~--~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl 436 (607)
..+..+.++||||+.++. ..+...+. .+|++++|+|+..+ .....++|+++|+||+|+
T Consensus 81 ~~~~~i~liDtpG~~~~~----------~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 81 KSSKLVTFIDLAGHERYL----------KTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred eCCcEEEEEECCCcHHHH----------HHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 567889999999975441 12233443 68999999999765 334578999999999998
Q ss_pred CCCcCchHHHHHHHHhcHHH-----------------HHhhCCCCCCCCEEEcccCCCCCHHHHHHHHH
Q 007334 437 LSGRQNSALYKRVKEAVPQE-----------------IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488 (607)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~ 488 (607)
.+........+.+.+.+... ..........+|++.+||.+|+|+++|...|.
T Consensus 151 ~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 151 APANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred cCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 75432222222222211100 00011223356999999999999998876653
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.9e-15 Score=166.82 Aligned_cols=146 Identities=24% Similarity=0.308 Sum_probs=98.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecC----------C----------------------CCceeeeEEEEEEEcC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGP----------E----------------------AGLTRDSVRVHFEYQG 371 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~----------~----------------------~gtT~~~~~~~~~~~~ 371 (607)
.++|+++|++|+|||||+|+|+.....++.. . .|+|+|.....+++++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 4789999999999999999999765443311 2 2556666666777888
Q ss_pred eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcC-CcEEEEEeCccCCCCc
Q 007334 372 RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEG-RGLVVIVNKMDLLSGR 440 (607)
Q Consensus 372 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~-~p~ivv~NK~Dl~~~~ 440 (607)
.++.|+||||+.++ . ..+...+..+|++++|+|+..+ .....+ +|+|+|+||+|+.+..
T Consensus 104 ~~~~liDtPG~~~f---------~-~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~ 173 (632)
T PRK05506 104 RKFIVADTPGHEQY---------T-RNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYD 173 (632)
T ss_pred ceEEEEECCChHHH---------H-HHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccch
Confidence 89999999996432 1 1233467789999999999765 111234 5788999999997531
Q ss_pred CchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 441 QNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.+.++.+...+..- .+.+.. ..++++++||++|.|+++.
T Consensus 174 --~~~~~~i~~~i~~~-~~~~~~-~~~~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 174 --QEVFDEIVADYRAF-AAKLGL-HDVTFIPISALKGDNVVTR 212 (632)
T ss_pred --hHHHHHHHHHHHHH-HHHcCC-CCccEEEEecccCCCcccc
Confidence 11223232222211 112221 3468999999999998753
|
|
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=164.94 Aligned_cols=116 Identities=17% Similarity=0.156 Sum_probs=95.9
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccce---e--eec------------cCCCCceeeeeEEEEeeeCCeeEEEecCCCCc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRRE---A--LVY------------NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~---~--~v~------------~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 181 (607)
.+.+|+|+|++|+|||||+|+|+.... . .+. ...+ +|.+.....+.+.+..+.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg--~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG--ITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCC--CCEeccEEEEEECCeEEEEEeCCCcH
Confidence 467999999999999999999973211 1 122 1334 78888888889999999999999987
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
++...+...+..+|++++|+|+..+...++..++..+.+. ++|.|+++||+|+..
T Consensus 87 ----------~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~--~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 87 ----------DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY--KVPRIAFVNKMDRTG 141 (693)
T ss_pred ----------HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc--CCCEEEEEECCCCCC
Confidence 4555677888999999999999999999998888888877 789999999999874
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=139.77 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=95.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|++|||||||+++++... ......+....+.....+..+ ...+.+|||||..+.. .. ...
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~---------~~-~~~ 77 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGE-FEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG---------GL-RDG 77 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhh---------hh-hHH
Confidence 5899999999999999998776443 211222222223333333333 3577899999954331 11 134
Q ss_pred HHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++..+|++++|+|.++.. ....+.|+++++||+|+.+.....+.. .+.+ ..+..
T Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~---------~~~~----~~~~~ 144 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQI---------TFHR----KKNLQ 144 (215)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHH---------HHHH----HcCCE
Confidence 566899999999998751 122578999999999986532111110 1111 12567
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|..+.+.+.
T Consensus 145 ~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 145 YYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998887654
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=141.06 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=83.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCC-------------CceeeeeEEEEeeeC----------CeeEEEecC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPD-------------DHVTRDIREGLAKLG----------DLRFKVLDS 177 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~-------------~~~T~~~~~~~~~~~----------~~~~~liDT 177 (607)
++|+++|+.++|||||+++|+.....+.....+ ...|.........+. +..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 369999999999999999998653221111111 012222211122222 678999999
Q ss_pred CCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 178 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 178 pG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
||+. ++...+..++..+|++++|+|+..+.+.+...+.+.+... ++|+++|+||+|+.
T Consensus 81 PG~~----------~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHV----------DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CCcc----------ccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECCCcc
Confidence 9998 5666778889999999999999999988887776666554 68999999999986
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=158.89 Aligned_cols=155 Identities=19% Similarity=0.268 Sum_probs=94.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCC-CceeeeEEEEEEEc------C------------eEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQ------G------------RTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~------~------------~~~~liDTpG~~~ 384 (607)
+..|+++|++|+|||||+|+|.+.. .+...+ ++|.+.....+.+. + ..+.||||||+.+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 4579999999999999999998763 333333 33433211111110 1 1278999999754
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcC---c---------
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQ---N--------- 442 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~---~--------- 442 (607)
+ ..+. .+.+..+|++++|+|++++ .....++|+++++||+|+..... .
T Consensus 84 f---------~~~~-~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~ 153 (586)
T PRK04004 84 F---------TNLR-KRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEK 153 (586)
T ss_pred H---------HHHH-HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhh
Confidence 4 2222 2456679999999999873 22346899999999999863211 0
Q ss_pred -----hHHHHHHHHhcHHHHHhh-C---------CCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 443 -----SALYKRVKEAVPQEIQTV-I---------PQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 443 -----~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+.++.....+...+.+. + .....++++++||++|+|++++++.+...
T Consensus 154 ~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 154 QSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 001111111111111100 0 11235789999999999999999887543
|
|
| >KOG2423 consensus Nucleolar GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.4e-15 Score=148.82 Aligned_cols=161 Identities=22% Similarity=0.311 Sum_probs=121.4
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC--CC-C
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG--FG-D 268 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~--~~-~ 268 (607)
+........+..+|++|.|+|+++|....-..+.++|++..+.+.+|+|+|||||++.. ....+...+. ++ -
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtw-----vt~~Wv~~lSkeyPTi 276 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----VTAKWVRHLSKEYPTI 276 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHH-----HHHHHHHHHhhhCcce
Confidence 34445556788999999999999999888888999999998899999999999999843 2333333332 22 2
Q ss_pred cEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCC
Q 007334 269 PIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQED 348 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~ 348 (607)
.|..|..+..|-..|++.+.++..- ...+..+.|++||.||+||||+||+|-...
T Consensus 277 AfHAsi~nsfGKgalI~llRQf~kL-------------------------h~dkkqISVGfiGYPNvGKSSiINTLR~Kk 331 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQLLRQFAKL-------------------------HSDKKQISVGFIGYPNVGKSSIINTLRKKK 331 (572)
T ss_pred eeehhhcCccchhHHHHHHHHHHhh-------------------------ccCccceeeeeecCCCCchHHHHHHHhhcc
Confidence 3677878888888888776654321 011235789999999999999999999999
Q ss_pred ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 349 RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 349 ~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
.+.+.|+||-|.-..+.. --+.+.|||+||+.-.
T Consensus 332 VCkvAPIpGETKVWQYIt---LmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 332 VCKVAPIPGETKVWQYIT---LMKRIFLIDCPGVVYP 365 (572)
T ss_pred cccccCCCCcchHHHHHH---HHhceeEecCCCccCC
Confidence 999999999875433222 1357889999998655
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=144.00 Aligned_cols=105 Identities=25% Similarity=0.360 Sum_probs=77.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceee---------------cCC------CCceeeeEEEEEEEcCeEEEEEecCCCc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLV---------------GPE------AGLTRDSVRVHFEYQGRTVYLVDTAGWL 383 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~---------------~~~------~gtT~~~~~~~~~~~~~~~~liDTpG~~ 383 (607)
..|+++|++|+|||||+++|+.....+. .++ -|.+.......+++++.++.||||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3699999999999999999985422211 111 1334445556788899999999999975
Q ss_pred ccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
++. ..+..+++.+|++|+|+|++.+ .....++|+++++||+|+...
T Consensus 83 df~----------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFS----------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHH----------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 442 2345678899999999999875 122358999999999998643
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-15 Score=156.81 Aligned_cols=151 Identities=23% Similarity=0.225 Sum_probs=95.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEE--------------------E------cCeEEE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFE--------------------Y------QGRTVY 375 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~--------------------~------~~~~~~ 375 (607)
.++|+++|++++|||||+++|++... .......|+|.+.....+. . .+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 47899999999999999999986421 1111123444443211110 0 146789
Q ss_pred EEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCCCCcCch
Q 007334 376 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQNS 443 (607)
Q Consensus 376 liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~~~~~~~ 443 (607)
+|||||+.++. ..+...+..+|++++|+|++++ .....+ +|+++|+||+|+.+.....
T Consensus 84 liDtPGh~~f~----------~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~ 153 (406)
T TIGR03680 84 FVDAPGHETLM----------ATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKAL 153 (406)
T ss_pred EEECCCHHHHH----------HHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHH
Confidence 99999964431 2234556679999999999863 111233 5799999999998642222
Q ss_pred HHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 444 ALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.++.+.+ .+... ...+.+++++||++|.|++++++.+...
T Consensus 154 ~~~~~i~~----~l~~~--~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 154 ENYEEIKE----FVKGT--VAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred HHHHHHHh----hhhhc--ccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 22222221 11111 1235789999999999999999888754
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.9e-15 Score=148.78 Aligned_cols=150 Identities=15% Similarity=0.229 Sum_probs=103.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeec--c-CCC------------CceeeeeEEEEeeeCCeeEEEecCCCCccccCc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVY--N-TPD------------DHVTRDIREGLAKLGDLRFKVLDSAGLETEATS 186 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~--~-~~~------------~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 186 (607)
+|+|+|++|+|||||+|+|+.....+.. . ..+ ...|.......+.+.+..+.+|||||+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~----- 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA----- 75 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH-----
Confidence 4899999999999999999854321100 0 011 0133344456677788999999999987
Q ss_pred hhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcC
Q 007334 187 GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLG 265 (607)
Q Consensus 187 ~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~ 265 (607)
++...+..++..+|++++|+|++.+.......+.+++... ++|.++|+||+|..... .......+. .++
T Consensus 76 -----~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~--~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~ 145 (268)
T cd04170 76 -----DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA--GIPRIIFINKMDRERAD---FDKTLAALQEAFG 145 (268)
T ss_pred -----HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECCccCCCC---HHHHHHHHHHHhC
Confidence 5556677889999999999999998877766666777665 78999999999987642 222222222 233
Q ss_pred CCCc--EEeecCCCCChHHHHHHh
Q 007334 266 FGDP--IAISAETGLGMTELYEAL 287 (607)
Q Consensus 266 ~~~~--i~iSA~~g~gi~eL~~~i 287 (607)
. ++ +.++..+|.|+..+.+.+
T Consensus 146 ~-~~~~~~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 146 R-PVVPLQLPIGEGDDFKGVVDLL 168 (268)
T ss_pred C-CeEEEEecccCCCceeEEEEcc
Confidence 3 33 455567777775554443
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=154.44 Aligned_cols=160 Identities=18% Similarity=0.100 Sum_probs=104.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee--eeccCCCCceeeeeEEEEeee---------------------C-----Cee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA--LVYNTPDDHVTRDIREGLAKL---------------------G-----DLR 171 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~--~v~~~~~~~~T~~~~~~~~~~---------------------~-----~~~ 171 (607)
..+|+++|+.++|||||+.+|++.... ......+ .|.+.......+ + ...
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg--~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRG--ITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcC--cEEEecccccccccccccCccccccccccccccccccccccE
Confidence 468999999999999999999763110 0011123 444433221111 0 257
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCC
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~ 250 (607)
+.+|||||+. ++.......+..+|++++|+|++++. ..+..+.+.++... ...|+++|+||+|+.+..
T Consensus 87 i~liDtPG~~----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 87 VSFVDAPGHE----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred EEEEECCCHH----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccch
Confidence 9999999987 55556666777899999999999886 56555555666554 124689999999997642
Q ss_pred cCc-HHHHHHHHH-hc--CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 251 TGS-LAGAAAESL-ML--GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 251 ~~~-~~~~~~~~~-~~--~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
... .......+. .. ...+++++||++|.|+++|++.|.+.++
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 210 011111111 11 1126799999999999999999876553
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=152.23 Aligned_cols=90 Identities=27% Similarity=0.251 Sum_probs=72.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 385 (607)
..++|+|||.||||||||+|+|++.. ..++++|+||+++..+.+.+.+ .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35799999999999999999998764 7899999999999998887653 34899999999865
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
... + +. ...+.+..++.||++++|+|+.
T Consensus 99 a~~-g-~g-Lg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASE-G-EG-LGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccc-h-hH-HHHHHHHHHHHCCEEEEEEeCC
Confidence 211 1 11 2246778899999999999983
|
|
| >KOG2484 consensus GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=147.37 Aligned_cols=174 Identities=20% Similarity=0.250 Sum_probs=116.2
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
.+.......++.+|+||.|+|+++|......++-+++....+++..|+|+||+|+++.+. .+....++...+. .+.+
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv--~e~Wl~YLr~~~p-tv~f 211 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREV--VEKWLVYLRREGP-TVAF 211 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHH--HHHHHHHHHhhCC-ccee
Confidence 455666778899999999999999998888788888876666799999999999998633 2223333444333 4433
Q ss_pred eecCCCCChHH-HHH-HhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc
Q 007334 272 ISAETGLGMTE-LYE-ALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 349 (607)
Q Consensus 272 iSA~~g~gi~e-L~~-~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~ 349 (607)
.++..+.+..+ .+. ..+ .-.+.....+.+.+.. ..-+..++|+|+|.|||||||+||.|.....
T Consensus 212 kast~~~~~~~~~~~~s~c-~gae~l~~~lgny~~~-------------~~lk~sIrvGViG~PNVGKSSvINsL~~~k~ 277 (435)
T KOG2484|consen 212 KASTQMQNSNSKNLQSSVC-FGAETLMKVLGNYCRK-------------GELKTSIRVGIIGYPNVGKSSVINSLKRRKA 277 (435)
T ss_pred ecccccccccccccccchh-hhHHHHHHHhcCcccc-------------cccCcceEeeeecCCCCChhHHHHHHHHhcc
Confidence 33333222210 000 000 0011112222222111 1123468999999999999999999998888
Q ss_pred eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 350 VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 350 ~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+.+++.||.|+...... -+..+.|+|.||+.-.
T Consensus 278 C~vg~~pGvT~smqeV~---Ldk~i~llDsPgiv~~ 310 (435)
T KOG2484|consen 278 CNVGNVPGVTRSMQEVK---LDKKIRLLDSPGIVPP 310 (435)
T ss_pred ccCCCCccchhhhhhee---ccCCceeccCCceeec
Confidence 89999999999876544 3678899999998655
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=154.81 Aligned_cols=146 Identities=16% Similarity=0.081 Sum_probs=107.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee---------------ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV---------------YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v---------------~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+++|+.....+. ....+ .|.+.....+..++..+.+|||||+.
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rG--iTi~~~~~~~~~~~~~i~liDtPGh~--- 155 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARG--ITINTATVEYETENRHYAHVDCPGHA--- 155 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCC--eeEEEEEEEEecCCcEEEEEECCCHH---
Confidence 46899999999999999999996321110 11233 77787777777788999999999998
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcC--cHH-HHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTG--SLA-GAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~--~~~-~~~~~ 260 (607)
++...+...+..+|++++|+|+..+...+..+++..+... ++| +|+++||+|+...+.. ... +....
T Consensus 156 -------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~ 226 (478)
T PLN03126 156 -------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVREL 226 (478)
T ss_pred -------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHH
Confidence 5666777788899999999999999988887777777766 678 7789999999753211 011 12223
Q ss_pred HHhcCCC----CcEEeecCCCCC
Q 007334 261 SLMLGFG----DPIAISAETGLG 279 (607)
Q Consensus 261 ~~~~~~~----~~i~iSA~~g~g 279 (607)
+...++. +++++||.+|.+
T Consensus 227 l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 227 LSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHhcCCCcCcceEEEEEcccccc
Confidence 3344442 568999998853
|
|
| >KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-14 Score=148.22 Aligned_cols=154 Identities=25% Similarity=0.290 Sum_probs=122.7
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
...|.|.|+|+...|||||+.+|-+...+-. ...| .|..+..-.+.. +|..+.+.||||+. .|..+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GG--ITQhIGAF~V~~p~G~~iTFLDTPGHa----------AF~aM 217 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGG--ITQHIGAFTVTLPSGKSITFLDTPGHA----------AFSAM 217 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh-hcCC--ccceeceEEEecCCCCEEEEecCCcHH----------HHHHH
Confidence 3469999999999999999999987765432 2334 787776555544 78899999999998 56666
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC--------C
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG--------D 268 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~--------~ 268 (607)
...-..-+|++++|+.+.+++.++..+.++..+.. +.|+|+.+||||..... .+....++...|.. .
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A--~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQ 292 (683)
T KOG1145|consen 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA--NVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQ 292 (683)
T ss_pred HhccCccccEEEEEEEccCCccHhHHHHHHHHHhc--CCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCcee
Confidence 66677889999999999999999998888888887 89999999999977543 34444454444431 5
Q ss_pred cEEeecCCCCChHHHHHHhcc
Q 007334 269 PIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~ 289 (607)
++++||++|+|++.|.+++.-
T Consensus 293 vipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILL 313 (683)
T ss_pred EEEeecccCCChHHHHHHHHH
Confidence 699999999999999998864
|
|
| >KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-16 Score=134.89 Aligned_cols=145 Identities=22% Similarity=0.237 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---------C--eEEEEEecCCCcccccccCcch
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---------G--RTVYLVDTAGWLQREKEKGPAS 393 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---------~--~~~~liDTpG~~~~~~~~~~~~ 393 (607)
+|...+|.+||||||++.+++.. .+...-+..+..|.....+.|+ + ..++||||||+.+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~-~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFR------- 81 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDG-KFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFR------- 81 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCC-cccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHH-------
Confidence 57788899999999999998854 3433334445556655555542 1 246799999975553
Q ss_pred hHHHHHHHHHhhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHH
Q 007334 394 LSVMQSRKNLMRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ 458 (607)
Q Consensus 394 ~~~~~~~~~i~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
..+...++.|-++++++|.+.. .+..++.-+|+++||+||.+.+ .+..+..
T Consensus 82 ---SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R-----------~Vs~~qa 147 (219)
T KOG0081|consen 82 ---SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR-----------VVSEDQA 147 (219)
T ss_pred ---HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh-----------hhhHHHH
Confidence 2344677889999999999875 2233566799999999997653 2233333
Q ss_pred hhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 459 TVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..++...++|+|++||-+|.||.+..+.+...+
T Consensus 148 ~~La~kyglPYfETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 148 AALADKYGLPYFETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred HHHHHHhCCCeeeeccccCcCHHHHHHHHHHHH
Confidence 334445689999999999999999888776654
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=164.63 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=85.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----eec------------CCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----LVG------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----~~~------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..+|+|+|++|+|||||+++|+..... .+. ...|+|.+.....+.|++.++.+|||||+.++.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 467999999999999999999753211 122 256899999999999999999999999975431
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+..++..+|++|+|+|+.++ .....++|+|+++||||+...
T Consensus 88 ----------~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 88 ----------IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred ----------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2466788899999999999876 233568999999999999854
|
|
| >KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=151.57 Aligned_cols=148 Identities=26% Similarity=0.359 Sum_probs=114.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc--------------eeecCCCCceeeeEEEEEEEcC---eEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR--------------VLVGPEAGLTRDSVRVHFEYQG---RTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~--------------~~~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~ 386 (607)
-..++||-+-..|||||..+|+.... ..+...-|+|.......+.|.+ ..+.+|||||+.++.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 35799999999999999999984322 1355677999998888888766 677899999999885
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
.+ ..+.+..||++|||+||.++ .+++.+..+|.|+||+|+...+. +.+..+
T Consensus 140 ~E----------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adp---------e~V~~q 200 (650)
T KOG0462|consen 140 GE----------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADP---------ERVENQ 200 (650)
T ss_pred ce----------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCH---------HHHHHH
Confidence 22 12455669999999999997 56678999999999999987642 222233
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.+.|. ....+++.+|||+|.|+.+++++|++.+
T Consensus 201 ~~~lF~-~~~~~~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 201 LFELFD-IPPAEVIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred HHHHhc-CCccceEEEEeccCccHHHHHHHHHhhC
Confidence 444443 2345899999999999999999999854
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-14 Score=141.09 Aligned_cols=145 Identities=27% Similarity=0.337 Sum_probs=92.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecC---------------CCCceeeeEEEEEEEc----------CeEEEEEecC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGP---------------EAGLTRDSVRVHFEYQ----------GRTVYLVDTA 380 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~---------------~~gtT~~~~~~~~~~~----------~~~~~liDTp 380 (607)
.|+++|+.++|||||+++|+......... ..|+|.+.....+.+. +..+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 58999999999999999998654322111 1244444433333343 5678899999
Q ss_pred CCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC------cCchH
Q 007334 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG------RQNSA 444 (607)
Q Consensus 381 G~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~------~~~~~ 444 (607)
|+.++. ..+..+++.+|++++|+|++++ .....++|+|+|+||+|+... .+...
T Consensus 82 G~~~f~----------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~ 151 (222)
T cd01885 82 GHVDFS----------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQ 151 (222)
T ss_pred CccccH----------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHH
Confidence 986542 2456788899999999999886 223467899999999998621 11122
Q ss_pred HHHHHHHhcHHHHHhhCC---------CCCCCC----EEEcccCCCCCH
Q 007334 445 LYKRVKEAVPQEIQTVIP---------QVTGIP----VVFTSALEGRGR 480 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~---------~~~~~~----~v~iSA~~g~gv 480 (607)
.+..+.+.+..-+..... +....| +++.||+.|..+
T Consensus 152 ~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 152 RLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred HHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 223333333332222210 111124 999999999886
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=138.68 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=103.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCC-C-CceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTP-D-DHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~-~-~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.........+ + ..+|........ .....+.+|||||+....... .++.. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~---~~~l~--~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPP---DDYLE--E 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCH---HHHHH--H
Confidence 47999999999999999999985432111111 1 012322211110 123478999999997432211 12211 1
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC-------cHHH----HHH----HHHh
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG-------SLAG----AAA----ESLM 263 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~-------~~~~----~~~----~~~~ 263 (607)
..+..+|++++|.| .+++..+..+.+++++. +.|+++|+||+|+...... ..+. ... .+..
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 23567899888854 45778887888888886 6899999999998642110 0111 111 1111
Q ss_pred --cCCCCcEEeecC--CCCChHHHHHHhccchHHH
Q 007334 264 --LGFGDPIAISAE--TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 264 --~~~~~~i~iSA~--~g~gi~eL~~~i~~~l~~~ 294 (607)
...++++.+|+. .+.|+..|.+.|...+++.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 234577999998 6899999999999888764
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=163.06 Aligned_cols=106 Identities=24% Similarity=0.262 Sum_probs=84.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee-----ecC------------CCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL-----VGP------------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~-----~~~------------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
-.+|+|+|++|+|||||+|+|++....+ +.+ ..|+|++.....+.+++.++.+|||||+.++.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 3589999999999999999997533221 111 46899999999999999999999999986542
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+..++..+|++++|+|++++ .....++|+++++||+|+...
T Consensus 90 ----------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 90 ----------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred ----------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2345778899999999999875 223468999999999999754
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-14 Score=139.77 Aligned_cols=146 Identities=24% Similarity=0.278 Sum_probs=91.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceee------------------cCCCCceeeeEEEEEEEc-----CeEEEEEecCCC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLV------------------GPEAGLTRDSVRVHFEYQ-----GRTVYLVDTAGW 382 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~------------------~~~~gtT~~~~~~~~~~~-----~~~~~liDTpG~ 382 (607)
+|+++|++++|||||+++|++...... ....|+|.+.....+.+. ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986532221 112344544443444333 357889999997
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCc------CchHHH
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGR------QNSALY 446 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~------~~~~~~ 446 (607)
.++. ..+..++..+|++++|+|++++ .....++|+++|+||+|+...+ +....+
T Consensus 82 ~~f~----------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l 151 (213)
T cd04167 82 VNFM----------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKL 151 (213)
T ss_pred cchH----------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHH
Confidence 5441 2345677889999999999765 1223579999999999986321 111223
Q ss_pred HHHHHhcHHHHHhhCCC--CCCC----CEEEcccCCCCCHH
Q 007334 447 KRVKEAVPQEIQTVIPQ--VTGI----PVVFTSALEGRGRI 481 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~--~~~~----~~v~iSA~~g~gv~ 481 (607)
..+.+.+...+...-.. .... .+++.||+.|.++.
T Consensus 152 ~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 152 RHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 33333333333222110 0123 48899999998874
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-14 Score=141.44 Aligned_cols=118 Identities=22% Similarity=0.232 Sum_probs=86.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee-----c----------cCCC----CceeeeeEEEEeeeCCeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV-----Y----------NTPD----DHVTRDIREGLAKLGDLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v-----~----------~~~~----~~~T~~~~~~~~~~~~~~~~liDTpG~ 180 (607)
..+|+|+|++|+|||||+++|+....++. . +... ...+.......+.+.+.++.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 36799999999999999999985432211 1 0000 012223444567788999999999998
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
. ++...+..++..+|++++|+|++.+.......+.+.+... ++|+++++||+|+...
T Consensus 82 ~----------df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~--~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 E----------DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR--GIPIITFINKLDREGR 138 (267)
T ss_pred h----------HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc--CCCEEEEEECCccCCC
Confidence 7 4555667788999999999999988776665566665554 7899999999998654
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=162.56 Aligned_cols=106 Identities=22% Similarity=0.230 Sum_probs=84.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc---e--eec------------CCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR---V--LVG------------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~---~--~~~------------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
-.+|+|+|++|+|||||+|+|+.... . .+. ...|+|++.....+.|.+..+.|+||||+.++.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 35899999999999999999973211 1 122 366899999989999999999999999975431
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+..++..+|++|+|+|+.++ .....++|+|+++||||+.+.
T Consensus 90 ----------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 90 ----------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred ----------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 2356788889999999999876 344578999999999998753
|
|
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=131.46 Aligned_cols=139 Identities=25% Similarity=0.255 Sum_probs=93.4
Q ss_pred EEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE--cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhc
Q 007334 329 IVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY--QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRA 406 (607)
Q Consensus 329 ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~a 406 (607)
++|.+|+|||||+|++++.... ......+..+........ .+..+.+|||||+.... ......+..+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~~~~~ 69 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR----------SLRRLYYRGA 69 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHH----------hHHHHHhcCC
Confidence 5799999999999999986532 122222223443333333 35678999999964331 1124567789
Q ss_pred cEEEEEeccchhh---------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 407 HVVALVLDAEEVR---------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 407 d~~llViD~~~~~---------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
|++++|+|++.+. ....++|+++++||+|+.......... ...........++++
T Consensus 70 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 139 (157)
T cd00882 70 DGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE----------LAEQLAKELGVPYFE 139 (157)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH----------HHHHHHhhcCCcEEE
Confidence 9999999999861 123478999999999997653321110 011112234679999
Q ss_pred cccCCCCCHHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQVI 488 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i~ 488 (607)
+||.++.|+.++++.+.
T Consensus 140 ~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 140 TSAKTGENVEELFEELA 156 (157)
T ss_pred EecCCCCChHHHHHHHh
Confidence 99999999999998764
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=162.11 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=107.0
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceee-----ecc------------CCCCceeeeeEEEEeeeCCeeEEEecCCCC
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREAL-----VYN------------TPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v~~------------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~ 180 (607)
..+.+|+|+|++|+|||||+|+|+.....+ +.+ ..+ +|.+.....+.+++.++.+|||||+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rg--iti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERG--ITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcC--CCEecceEEEEECCeEEEEEECCCC
Confidence 346799999999999999999997432211 111 233 7888888889999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHH-
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAA- 259 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~- 259 (607)
. ++...+..++..+|++++|+|+.++...++..+..++... ++|+++|+||+|+.... ......
T Consensus 86 ~----------~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~ivviNK~D~~~~~---~~~~~~~ 150 (689)
T TIGR00484 86 V----------DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY--EVPRIAFVNKMDKTGAN---FLRVVNQ 150 (689)
T ss_pred c----------chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc--CCCEEEEEECCCCCCCC---HHHHHHH
Confidence 7 3444566788999999999999999888887777777766 78999999999988643 122221
Q ss_pred HHHhcCCC---CcEEeecCCCC
Q 007334 260 ESLMLGFG---DPIAISAETGL 278 (607)
Q Consensus 260 ~~~~~~~~---~~i~iSA~~g~ 278 (607)
....++.. ..+++||.++.
T Consensus 151 i~~~l~~~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 151 IKQRLGANAVPIQLPIGAEDNF 172 (689)
T ss_pred HHHHhCCCceeEEeccccCCCc
Confidence 22233432 25788887763
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-14 Score=143.33 Aligned_cols=104 Identities=28% Similarity=0.406 Sum_probs=76.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee-----ec------C------CCCceeeeEEEEEEEcCeEEEEEecCCCcccccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL-----VG------P------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~-----~~------~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 388 (607)
+|+++|++|+|||||+|+|++..... +. + ..+.|.......+.+++..+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 48999999999999999998542211 10 0 11444455556778889999999999964331
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+..++..+|++++|+|++.+ .....++|+++++||+|+...
T Consensus 79 --------~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 79 --------GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred --------HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 2355778899999999999875 223468999999999998643
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=149.71 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=113.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
++-|+++|+-..|||||+..+-+.+ .....-.|+|.+....++.++ ...+.++||||+ +.|+.++++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~-Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH---------eAFt~mRaR 74 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH---------EAFTAMRAR 74 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCc-cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH---------HHHHHHHhc
Confidence 4569999999999999999998664 555667789999988888874 468999999994 456667765
Q ss_pred HHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 401 KNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
.+ .-+|+++||+|++++ .+...+.|+|+++||+|.++........+.....+..+ .| .....++
T Consensus 75 Ga-~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E---~~--gg~v~~V 148 (509)
T COG0532 75 GA-SVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPE---EW--GGDVIFV 148 (509)
T ss_pred CC-ccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHh---hc--CCceEEE
Confidence 43 458999999999997 33457999999999999986532211111111111111 11 1236899
Q ss_pred EcccCCCCCHHHHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++||++|+|+++|++.+.-..+.+
T Consensus 149 pvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 149 PVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred EeeccCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999887665544
|
|
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=136.01 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=108.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.+|+++|.+|||||||+++|.+..+........ .+.+......... ..++.+|||+|++ ++......
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~~~Dt~gq~----------~~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI--GNLDPAKTIEPYRRNIKLQLWDTAGQE----------EYRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCce--eeeeEEEEEEeCCCEEEEEeecCCCHH----------HHHHHHHH
Confidence 689999999999999999999877543222111 1222222111111 4679999999999 67777888
Q ss_pred HhhccCEEEEEEecCCCCCHhH--HHHHHHHHhhC-CCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKHA-PQIKPIVAMNKCESLHNGT------------GSLAGAAAESLML 264 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~ 264 (607)
++..++++++|+|........+ ..+...+.... .+.|+++|+||+|+..... .............
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLP 153 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhh
Confidence 9999999999999987433333 33444455544 3689999999999987642 1111111111111
Q ss_pred --CCCCcEEeecC--CCCChHHHHHHhccchHH
Q 007334 265 --GFGDPIAISAE--TGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 --~~~~~i~iSA~--~g~gi~eL~~~i~~~l~~ 293 (607)
....++.+||+ ++.++.+++..+...+..
T Consensus 154 ~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 154 EVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 12237999999 999999999998877754
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=137.76 Aligned_cols=168 Identities=15% Similarity=0.163 Sum_probs=116.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|.|+|.+|||||||+|+|++.+...+.+.+. .|....+....+.+..+.||||||+++....+ .+......+
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~--~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D---~~~r~~~~d 113 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGV--GTDITTRLRLSYDGENLVLWDTPGLGDGKDKD---AEHRQLYRD 113 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeeccc--CCCchhhHHhhccccceEEecCCCcccchhhh---HHHHHHHHH
Confidence 3467899999999999999999877666665553 33333333344567889999999999543222 145667788
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCC----c-----C-cHHHH-------HHHHH
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG----T-----G-SLAGA-------AAESL 262 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~----~-----~-~~~~~-------~~~~~ 262 (607)
++...|++++++|+.++.-..+.++..-+.-...++++++|+|.+|..... . . ...+. ...+.
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876666655544443333468999999999987542 0 0 00110 01111
Q ss_pred hcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 263 MLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 263 ~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
....+++..|+..++|+++|...+...++.
T Consensus 194 -q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 194 -QEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred -hhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 113366777889999999999999987764
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-14 Score=154.17 Aligned_cols=117 Identities=21% Similarity=0.216 Sum_probs=86.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee-----eec----------cCCC----CceeeeeEEEEeeeCCeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA-----LVY----------NTPD----DHVTRDIREGLAKLGDLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~-----~v~----------~~~~----~~~T~~~~~~~~~~~~~~~~liDTpG~ 180 (607)
..+|+|+|++|+|||||.++|+....+ .+. +... ...|.......+.+++..+++|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 578999999999999999999732111 111 0000 012333344556778999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
. ++...+..++..+|++|+|+|++++.......+.+..+.. ++|+++++||+|+..
T Consensus 90 ~----------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~--~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 90 E----------DFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR--DTPIFTFINKLDRDG 145 (526)
T ss_pred h----------hhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc--CCCEEEEEECCcccc
Confidence 7 5556677788999999999999998877766666666655 789999999999764
|
|
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=153.23 Aligned_cols=153 Identities=23% Similarity=0.236 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC--ceeecCCCCceeeeEEEEEEE------------------c--------CeEE
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFEY------------------Q--------GRTV 374 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~--~~~~~~~~gtT~~~~~~~~~~------------------~--------~~~~ 374 (607)
..++|+++|+.++|||||+.+|++.. ........|+|.+.....+.+ + ...+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 35899999999999999999997631 111122346666543221111 0 2578
Q ss_pred EEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCCCCcCc
Q 007334 375 YLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQN 442 (607)
Q Consensus 375 ~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~~~~~~ 442 (607)
.||||||+.++ . ..+...+..+|++++|+|++++ .....+ .|+++|+||+|+.+....
T Consensus 88 ~liDtPG~~~f---------~-~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 88 SFVDAPGHETL---------M-ATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEECCCHHHH---------H-HHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhH
Confidence 99999996433 1 2334555678999999999853 111234 469999999999864322
Q ss_pred hHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 443 SALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
...++.+.. .+... ...+.+++++||++|.|+++|++.|...+
T Consensus 158 ~~~~~~i~~----~l~~~--~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 158 LENYEQIKE----FVKGT--VAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHHHH----Hhccc--cCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 111222211 11110 12357899999999999999998887643
|
|
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.8e-14 Score=134.73 Aligned_cols=158 Identities=21% Similarity=0.228 Sum_probs=97.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-----C--eEEEEEecCCCcccccccCcchhHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-----G--RTVYLVDTAGWLQREKEKGPASLSVM 397 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-----~--~~~~liDTpG~~~~~~~~~~~~~~~~ 397 (607)
+||+++|.++||||||++++++.. +.....+.+..+.....+.++ + ..+.||||+|..+. ...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~-f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~---------~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQ-VLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV---------KST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH---------HHH
Confidence 489999999999999999999764 222223333323333334442 2 35779999995332 222
Q ss_pred HHHHHHhhccEEEEEeccchh-----------hHH----------------------hcCCcEEEEEeCccCCCCcCchH
Q 007334 398 QSRKNLMRAHVVALVLDAEEV-----------RAV----------------------EEGRGLVVIVNKMDLLSGRQNSA 444 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~-----------~~~----------------------~~~~p~ivv~NK~Dl~~~~~~~~ 444 (607)
...+++++|++|+|+|.++. ... ..+.|+|||+||+|+.+.+....
T Consensus 71 -~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~ 149 (202)
T cd04102 71 -RAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSG 149 (202)
T ss_pred -HHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccch
Confidence 23578899999999999886 111 12579999999999976432111
Q ss_pred HHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 007334 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGR 513 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~ 513 (607)
... ..-...++...++|.+++++.....+.. ..-...+|.++++.++++
T Consensus 150 ~~~-------~~~~~~ia~~~~~~~i~~~c~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 150 NLV-------LTARGFVAEQGNAEEINLNCTNGRLLAA-------------GSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred HHH-------hhHhhhHHHhcCCceEEEecCCcccccC-------------CCccHHHHHHHHHHHHHh
Confidence 100 0011222344578899999887665421 122345667777777665
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-14 Score=141.52 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=91.6
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---------------CeeEEEecCCCCccc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---------------DLRFKVLDSAGLETE 183 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---------------~~~~~liDTpG~~~~ 183 (607)
...+|+|+|..|||||||++++++..+... ..+. +..+.....+.++ ...+.||||+|++
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~-~~pT--IG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE-- 94 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIAR-PPQT--IGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE-- 94 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccc-cCCc--eeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh--
Confidence 357899999999999999999998754211 1121 2233333333332 3569999999998
Q ss_pred cCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC-------------CCCcEEEEecCCCcccC
Q 007334 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA-------------PQIKPIVAMNKCESLHN 249 (607)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~-------------~~~p~ilV~NK~D~~~~ 249 (607)
++......++..+|++|+|+|+++..+..+.. +++.+.... .+.|+++|+||+|+...
T Consensus 95 --------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 --------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred --------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 56667778899999999999999876665532 333343321 14799999999999764
Q ss_pred Cc------CcHHHHHHHHHhcCC
Q 007334 250 GT------GSLAGAAAESLMLGF 266 (607)
Q Consensus 250 ~~------~~~~~~~~~~~~~~~ 266 (607)
+. +..+....++...|+
T Consensus 167 ~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 167 EGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccccccHHHHHHHHHHcCC
Confidence 21 134555566666664
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-14 Score=146.65 Aligned_cols=89 Identities=28% Similarity=0.244 Sum_probs=72.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-----------------EEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-----------------TVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~ 386 (607)
.++|++||.||||||||+|+|++.. ..++++|+||+++..+.+.+.+. ++.++||||+.+..
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 3689999999999999999999886 78999999999999888777552 58999999997642
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
.. + .-...+.+..++.||++++|+|+.
T Consensus 81 ~~-g--~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SK-G--EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred Ch-H--HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 1 112356778899999999999984
|
|
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-14 Score=134.44 Aligned_cols=163 Identities=15% Similarity=0.202 Sum_probs=97.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee-ecCCCC---ceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAG---LTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~-~~~~~g---tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
+++|+++|++|||||||+|+|+|..... .....+ +|+... .+.. ....+.+|||||+.+... ..+.+ ..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~--~~~~~--l~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAF--PPDDY--LE 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccC--CHHHH--HH
Confidence 4689999999999999999999854221 111112 233221 1111 134688999999865421 11111 11
Q ss_pred HHHHHhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcC---------chHHHHHHHHhcHHHHHhhC
Q 007334 399 SRKNLMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQ---------NSALYKRVKEAVPQEIQTVI 461 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~ 461 (607)
...+..+|++++|.|..-. .....++|+++|+||||+..... ..+..+.+.+.+...+...
T Consensus 75 -~~~~~~~d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~- 152 (197)
T cd04104 75 -EMKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA- 152 (197)
T ss_pred -HhCccCcCEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc-
Confidence 1224578999998665311 22334789999999999864211 1233344443333332211
Q ss_pred CCCCCCCEEEcccC--CCCCHHHHHHHHHHHHHHHh
Q 007334 462 PQVTGIPVVFTSAL--EGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 462 ~~~~~~~~v~iSA~--~g~gv~~l~~~i~~~~~~~~ 495 (607)
.....+|+.+|+. .+.|+..+.+.+...+.+..
T Consensus 153 -~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 153 -GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred -CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 1234589999998 68999999888887765433
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-14 Score=122.73 Aligned_cols=151 Identities=18% Similarity=0.139 Sum_probs=114.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
..+.+||..|+|||||+|.+...... .+ -+ -|+......+.-+...+.+||.||+- ++..++..|
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~--ed-mi--ptvGfnmrk~tkgnvtiklwD~gGq~----------rfrsmWery 85 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL--ED-MI--PTVGFNMRKVTKGNVTIKLWDLGGQP----------RFRSMWERY 85 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch--hh-hc--ccccceeEEeccCceEEEEEecCCCc----------cHHHHHHHH
Confidence 57999999999999999998765432 22 22 46667777777788999999999998 788889999
Q ss_pred hhccCEEEEEEecCCCC--CHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCC-------CcE
Q 007334 201 LAKTQFAIFMIDVRSGL--HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFG-------DPI 270 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~--~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~-------~~i 270 (607)
++..+++++|+|++++. +....++.+.|.+. ..++|+++.+||.|+...-. ........|+. ..+
T Consensus 86 cR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~-----~~~li~rmgL~sitdREvcC~ 160 (186)
T KOG0075|consen 86 CRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALS-----KIALIERMGLSSITDREVCCF 160 (186)
T ss_pred hhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccccc-----HHHHHHHhCccccccceEEEE
Confidence 99999999999999853 23334566666543 44799999999999886522 12223334432 248
Q ss_pred EeecCCCCChHHHHHHhccch
Q 007334 271 AISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l 291 (607)
.+||+...+|+-+.++|.++.
T Consensus 161 siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 161 SISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEcCCccHHHHHHHHHHHh
Confidence 999999999999999998754
|
|
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.7e-14 Score=150.97 Aligned_cols=150 Identities=23% Similarity=0.264 Sum_probs=103.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce------------------------------eecCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~ 372 (607)
+.+.|+++|+.++|||||+.+|+..... .....-|+|.+.....+++++.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 3478999999999999999999742110 1112347888888778888999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.|+||||+.++. ..+..++..||++|+|+|++++ .....++| +|+++||+
T Consensus 86 ~i~liDtPGh~df~----------~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKm 155 (447)
T PLN00043 86 YCTVIDAPGHRDFI----------KNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKM 155 (447)
T ss_pred EEEEEECCCHHHHH----------HHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcc
Confidence 99999999975542 2344567789999999999863 11135775 78899999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
|+.+.......++.+.+.+...+.+.-.....++++++||++|.|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 987322222334444444443333221122357899999999999854
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-14 Score=143.30 Aligned_cols=147 Identities=27% Similarity=0.360 Sum_probs=110.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc------------------------------eeecCCCCceeeeEEEEEEEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR------------------------------VLVGPEAGLTRDSVRVHFEYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~------------------------------~~~~~~~gtT~~~~~~~~~~~~~~ 373 (607)
-++++++|++++|||||+-+|+.+-. .......|.|.|.....++.+...
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 47899999999999999999974310 113345699999998899988889
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh--------------h---HHhcC-CcEEEEEeCcc
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV--------------R---AVEEG-RGLVVIVNKMD 435 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~--------------~---~~~~~-~p~ivv~NK~D 435 (607)
+.|+|+||++++- ..+...+..||++|||+|+..+ . +.-.| ..+|+++||+|
T Consensus 87 ~tIiDaPGHrdFv----------knmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD 156 (428)
T COG5256 87 FTIIDAPGHRDFV----------KNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMD 156 (428)
T ss_pred EEEeeCCchHHHH----------HHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccc
Confidence 9999999987762 2334455679999999999876 0 11123 46899999999
Q ss_pred CCCCcCchHHHHHHHHhcHHHHHhhCCCCC-CCCEEEcccCCCCCHHHH
Q 007334 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVT-GIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~iSA~~g~gv~~l 483 (607)
+++- ..+.|+++...+.. +.+.+.... .+++++|||..|.|+.+.
T Consensus 157 ~v~w--de~rf~ei~~~v~~-l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSW--DEERFEEIVSEVSK-LLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred cccc--CHHHHHHHHHHHHH-HHHHcCCCccCCeEEecccccCCccccc
Confidence 9873 35667777777766 555554433 588999999999998654
|
|
| >KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-14 Score=122.08 Aligned_cols=146 Identities=21% Similarity=0.171 Sum_probs=103.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+.+.++|-.|+|||||+|.+...+.. ...+-|+-.....++.+...+.+||.||+.+++ .+..++.+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~rfr----------smWerycR 87 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----------SMWERYCR 87 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCccHH----------HHHHHHhh
Confidence 67999999999999999987643321 222333444444556677899999999987764 34567889
Q ss_pred hccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
+++++++|+|+.++ .....++|+++++||.|+.+.-+...+.++ +.-..-....+.+
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~r--------mgL~sitdREvcC 159 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIER--------MGLSSITDREVCC 159 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHH--------hCccccccceEEE
Confidence 99999999999986 122358999999999999876432222222 1111111224678
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+.+|+++..|++-+.+++++.-
T Consensus 160 ~siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 160 FSISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEEcCCccHHHHHHHHHHHh
Confidence 9999999999999999888754
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-14 Score=127.38 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=75.4
Q ss_pred EEEEecCCCCchhHHHHHhhcccee---eeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREA---LVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~---~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
+|+++|.+|||||||+++|++.... ......+ .+..............+.+||++|... +.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSE--ITIGVDVIVVDGDRQSLQFWDFGGQEE----------FYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTT--SCEEEEEEEETTEEEEEEEEEESSSHC----------HHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCC--CcEEEEEEEecCCceEEEEEecCccce----------eccccc
Confidence 5899999999999999999987754 1111222 233322333333444589999999972 222222
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh---CCCCcEEEEecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH---APQIKPIVAMNKCE 245 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~---~~~~p~ilV~NK~D 245 (607)
..+..+|++++|+|++++.+... .++..|+... ..+.|+++|+||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 33788999999999998766665 3455666554 45799999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=124.06 Aligned_cols=133 Identities=25% Similarity=0.252 Sum_probs=84.6
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|+.++|||||+++|.+.+.. ..-|.. +.+.+ .+|||||=+- +....+ .........
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~-----i~~~~---~~IDTPGEyi----E~~~~y--~aLi~ta~d 63 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQA-----IEYYD---NTIDTPGEYI----ENPRFY--HALIVTAQD 63 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCccce-----eEecc---cEEECChhhe----eCHHHH--HHHHHHHhh
Confidence 7999999999999999999986421 111211 22222 3599999211 111111 112234457
Q ss_pred ccEEEEEeccchh-------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCC
Q 007334 406 AHVVALVLDAEEV-------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGR 478 (607)
Q Consensus 406 ad~~llViD~~~~-------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~ 478 (607)
||++++|.|+++. ....-++|+|=|+||+|+..... ..+..++.+ . ....-.+|++||.+|+
T Consensus 64 ad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~---~i~~a~~~L----~----~aG~~~if~vS~~~~e 132 (143)
T PF10662_consen 64 ADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDA---NIERAKKWL----K----NAGVKEIFEVSAVTGE 132 (143)
T ss_pred CCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchh---hHHHHHHHH----H----HcCCCCeEEEECCCCc
Confidence 9999999999986 22234789999999999984321 122221111 1 1122357999999999
Q ss_pred CHHHHHHHHH
Q 007334 479 GRIAVMHQVI 488 (607)
Q Consensus 479 gv~~l~~~i~ 488 (607)
|+++|.+.|.
T Consensus 133 Gi~eL~~~L~ 142 (143)
T PF10662_consen 133 GIEELKDYLE 142 (143)
T ss_pred CHHHHHHHHh
Confidence 9999988763
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=136.07 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=94.1
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++...+.++...+ +|.........+.+.++.+|||||+.+................
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~--~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQS--ETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC--ceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 35799999999999999999999988766665554 6777776667778899999999999854211112222333344
Q ss_pred HHhh--ccCEEEEEEecCC-CCCHhHHHHHHHHHhhCC---CCcEEEEecCCCcccCC
Q 007334 199 NVLA--KTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNG 250 (607)
Q Consensus 199 ~~~~--~ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~---~~p~ilV~NK~D~~~~~ 250 (607)
.++. ..|++++|..+.. ..+..+..+++.+.+.+. -.++++|+||+|.....
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 4554 5788888876653 456777778888877532 25799999999988653
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=158.53 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=91.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee-----------eccCC----CCceeeeeEEEEeeeCCeeEEEecCCCCccc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL-----------VYNTP----DDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----------v~~~~----~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~ 183 (607)
...+|+|+|..|+|||||+++|+.....+ +.+.. ....|.......+.+.+..+.+|||||+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~-- 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI-- 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH--
Confidence 36799999999999999999998542111 11100 01145555556777889999999999997
Q ss_pred cCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
++...+..++..+|++++|+|++++.......+...+... ++|+++|+||+|+...
T Consensus 85 --------df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 --------DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred --------HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEECCCCCCC
Confidence 5666778889999999999999998887776666666665 7899999999998753
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=149.90 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=86.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee-----ec----------cCC----CCceeeeeEEEEeeeCCeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL-----VY----------NTP----DDHVTRDIREGLAKLGDLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v~----------~~~----~~~~T~~~~~~~~~~~~~~~~liDTpG~ 180 (607)
..+|+|||++|+|||||.++|+-....+ +. +.. ....|.......+++.+..+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 5789999999999999999986321111 11 000 0113344445566778999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
. ++...+..++..+|++|+|+|++.+.......+.+.++.. ++|+++++||+|+.
T Consensus 91 ~----------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~--~~PiivviNKiD~~ 145 (527)
T TIGR00503 91 E----------DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR--DTPIFTFMNKLDRD 145 (527)
T ss_pred h----------hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEECcccc
Confidence 7 5666677888999999999999998777766666666554 78999999999975
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-14 Score=149.79 Aligned_cols=151 Identities=21% Similarity=0.194 Sum_probs=106.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee------------------------eeccC----CCCceeeeeEEEEeeeCCee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA------------------------LVYNT----PDDHVTRDIREGLAKLGDLR 171 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~------------------------~v~~~----~~~~~T~~~~~~~~~~~~~~ 171 (607)
..+|+++|+.++|||||+.+|+..... .+.+. .....|.+.....+.+++..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 358999999999999999999752110 01110 01237888888888888999
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCC-------HhHHHHHHHHHhhCCCCc-EEEEecC
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH-------PLDLEVGKWLRKHAPQIK-PIVAMNK 243 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~-------~~~~~~~~~l~~~~~~~p-~ilV~NK 243 (607)
+.|+||||+. ++...+...+..+|++++|+|+..+.. .+..+.+..+... ++| +|+++||
T Consensus 87 i~lIDtPGh~----------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNK 154 (446)
T PTZ00141 87 FTIIDAPGHR----------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINK 154 (446)
T ss_pred EEEEECCChH----------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEc
Confidence 9999999987 677777888899999999999998863 4555666666665 666 6789999
Q ss_pred CCccc--CCcCcH----HHHHHHHHhcCC----CCcEEeecCCCCChHH
Q 007334 244 CESLH--NGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTE 282 (607)
Q Consensus 244 ~D~~~--~~~~~~----~~~~~~~~~~~~----~~~i~iSA~~g~gi~e 282 (607)
+|... ...... .+....+...++ .+++++||.+|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99532 111111 222233334455 2579999999999964
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.8e-14 Score=145.70 Aligned_cols=163 Identities=18% Similarity=0.249 Sum_probs=117.9
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceee--------e------ccCCCCceeeeeEEEEeee-----CCeeEEEecCC
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREAL--------V------YNTPDDHVTRDIREGLAKL-----GDLRFKVLDSA 178 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~--------v------~~~~~~~~T~~~~~~~~~~-----~~~~~~liDTp 178 (607)
+.+.+.+||.+-..|||||-.||+...... + ....| .|.-.....+.+ ..+.+.+||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERG--ITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERG--ITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcC--ceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 446789999999999999999998543211 1 11223 444443333333 34789999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA 258 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~ 258 (607)
|+. +|.......+..|.++++|+|++.|+..+.. .+.....-.+..+|-|+||+|+...+.+......
T Consensus 85 GHV----------DFsYEVSRSLAACEGalLvVDAsQGveAQTl--AN~YlAle~~LeIiPViNKIDLP~Adpervk~eI 152 (603)
T COG0481 85 GHV----------DFSYEVSRSLAACEGALLVVDASQGVEAQTL--ANVYLALENNLEIIPVLNKIDLPAADPERVKQEI 152 (603)
T ss_pred Ccc----------ceEEEehhhHhhCCCcEEEEECccchHHHHH--HHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHH
Confidence 998 4444455667889999999999999988873 3333333337899999999999987654444444
Q ss_pred HHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 259 AESLMLGFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 259 ~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
.....+...+.+.+||++|.|+++++++|.+.++.+
T Consensus 153 e~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 153 EDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred HHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 455455556789999999999999999999988753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 607 | ||||
| 4dcs_A | 456 | Crystal Structure Of B. Subtilis Enga In Complex Wi | 4e-49 | ||
| 2hjg_A | 436 | The Crystal Structure Of The B. Subtilis Yphc Gtpas | 4e-46 | ||
| 1mky_A | 439 | Structural Analysis Of The Domain Interactions In D | 1e-42 | ||
| 2dyk_A | 161 | Crystal Structure Of N-Terminal Gtp-Binding Domain | 1e-18 | ||
| 2dyk_A | 161 | Crystal Structure Of N-Terminal Gtp-Binding Domain | 3e-04 | ||
| 3geh_A | 462 | Crystal Structure Of Mnme From Nostoc In Complex Wi | 3e-14 | ||
| 1xzp_A | 482 | Structure Of The Gtp-Binding Protein Trme From Ther | 7e-12 | ||
| 2gj9_A | 172 | Structure Of The Mnme G-Domain In Complex With GdpA | 1e-08 | ||
| 1rfl_A | 172 | Nmr Data Driven Structural Model Of G-Domain Of Mnm | 2e-08 | ||
| 3gee_A | 476 | Crystal Structure Of Mnme From Chlorobium Tepidum I | 3e-08 | ||
| 2gj8_A | 172 | Structure Of The Mnme G-domain In Complex With Gdp* | 3e-08 | ||
| 3iev_A | 308 | Crystal Structure Of Era In Complex With Mggnp And | 2e-07 | ||
| 3r9w_A | 307 | Crystal Structure Of Era In Complex With Mggdpnp An | 3e-07 | ||
| 3a1t_A | 258 | Crystal Structue Of The Cytosolic Domain Of T. Mari | 3e-06 | ||
| 2wjg_A | 188 | Structure And Function Of The Feob G-Domain From Me | 3e-06 | ||
| 2wji_A | 165 | Structure And Function Of The Feob G-Domain From Me | 3e-06 | ||
| 2wjh_A | 166 | Structure And Function Of The Feob G-Domain From Me | 3e-06 | ||
| 3a1w_A | 168 | Crystal Structue Of The G Domain Of T. Maritima Feo | 5e-06 | ||
| 2wjj_A | 168 | Structure And Function Of The Feob G-Domain From Me | 2e-05 | ||
| 3a1s_A | 258 | Crystal Structue Of The Cytosolic Domain Of T. Mari | 2e-05 | ||
| 1ega_A | 301 | Crystal Structure Of A Widely Conserved Gtpase Era | 3e-05 | ||
| 1ega_A | 301 | Crystal Structure Of A Widely Conserved Gtpase Era | 6e-05 | ||
| 1x18_X | 292 | Contact Sites Of Era Gtpase On The Thermus Thermoph | 5e-05 | ||
| 1x18_X | 292 | Contact Sites Of Era Gtpase On The Thermus Thermoph | 6e-05 | ||
| 3qq5_A | 423 | Crystal Structure Of The [fefe]-Hydrogenase Maturat | 2e-04 | ||
| 3pqc_A | 195 | Crystal Structure Of Thermotoga Maritima Ribosome B | 3e-04 | ||
| 1wf3_A | 301 | Crystal Structure Of Gtp-Binding Protein Tt1341 Fro | 5e-04 | ||
| 2e87_A | 357 | Crystal Structure Of Hypothetical Gtp-Binding Prote | 5e-04 |
| >pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456 | Back alignment and structure |
|
| >pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In Complex With Gdp Length = 436 | Back alignment and structure |
|
| >pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439 | Back alignment and structure |
|
| >pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161 | Back alignment and structure |
|
| >pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161 | Back alignment and structure |
|
| >pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp, Folinic Acid And Zn Length = 462 | Back alignment and structure |
|
| >pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga Maritima Length = 482 | Back alignment and structure |
|
| >pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-, Mg2+ And Rb+ Length = 172 | Back alignment and structure |
|
| >pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme Protein Length = 172 | Back alignment and structure |
|
| >pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In Complex With Gdp And Folinic Acid Length = 476 | Back alignment and structure |
|
| >pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-, Mg2+ And K+ Length = 172 | Back alignment and structure |
|
| >pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308 | Back alignment and structure |
|
| >pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And Nucleotides 1506- 1542 Of 16s Ribosomal Rna Length = 307 | Back alignment and structure |
|
| >pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form Ii Length = 258 | Back alignment and structure |
|
| >pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From Methanococcus Jannaschii Length = 188 | Back alignment and structure |
|
| >pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From Methanococcus Jannaschii Length = 165 | Back alignment and structure |
|
| >pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From Methanococcus Jannaschii Length = 166 | Back alignment and structure |
|
| >pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron Iransporter Length = 168 | Back alignment and structure |
|
| >pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From Methanococcus Jannaschii Length = 168 | Back alignment and structure |
|
| >pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima Feob Iron Iransporter In Gdp Form I Length = 258 | Back alignment and structure |
|
| >pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era Length = 301 | Back alignment and structure |
|
| >pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era Length = 301 | Back alignment and structure |
|
| >pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 292 | Back alignment and structure |
|
| >pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus 30s Subunit Length = 292 | Back alignment and structure |
|
| >pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation Protein Hydf Length = 423 | Back alignment and structure |
|
| >pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195 | Back alignment and structure |
|
| >pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From Thermus Thermophilus Hb8 Length = 301 | Back alignment and structure |
|
| >pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With Gdp Length = 357 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439 | Back alignment and structure |
|---|
Score = 398 bits (1026), Expect = e-134
Identities = 131/479 (27%), Positives = 220/479 (45%), Gaps = 63/479 (13%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
+ TV+I+GRPNVGKS LFN+L+++++A+V + VTRD + + FK++D+ G
Sbjct: 1 MATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEG--VTRDPVQDTVEWYGKTFKLVDTCG 58
Query: 180 LETEATSGSILDRTAGMTANVLAKTQFAI-------FMIDVRSGLHPLDLEVGKWLRKHA 232
+ ++ + T I F++D + G+ D + +LRK
Sbjct: 59 VFDNPQDI--------ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKST 110
Query: 233 PQIKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291
I+ NK E+L E LGFG+PI +SAE + + + E + +
Sbjct: 111 ---VDTILVANKAENLREFERE---VKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 164
Query: 292 EDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351
E+ + + E +++AIVGRPNVGKSTL NA+L ++R L
Sbjct: 165 EE-----------------KGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERAL 207
Query: 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK--EKGPASLSVMQSRKNLMRAHVV 409
V P G TRD V GR VDTAG ++ + + S + ++ +A VV
Sbjct: 208 VSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVV 267
Query: 410 ALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459
+VLDA + GR VV+ NK DL+ R+ Y + +
Sbjct: 268 VIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKR--YDEFTK----LFRE 321
Query: 460 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQ 519
+ + P++FTSA +G ++ + Y + ++P+S +N L+KV+ +
Sbjct: 322 KLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTN---L 378
Query: 520 SAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKED-FDLGGIPIRITQRS 577
KI + QV +PPTF+ F++ + + + + FL K +++ F G PI + +
Sbjct: 379 PRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKR 437
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 392 bits (1011), Expect = e-132
Identities = 144/482 (29%), Positives = 235/482 (48%), Gaps = 74/482 (15%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
P V I+GRPNVGKS +FNR+ R ++V +TP VTRD A+ + F ++D+ G
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGG 60
Query: 180 LETEATSGSILDRTAGMTANVLAKTQFAI-------FMIDVRSGLHPLDLEVGKWLRKHA 232
++ A + + + A+ FM++ R G+ D EV K L +
Sbjct: 61 IDIGD---------EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK 111
Query: 233 PQIKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291
KP ++A+NK ++ + LGFG+P IS GLG+ +L +A+
Sbjct: 112 ---KPVVLAVNKLDNTEMRA-----NIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHF 163
Query: 292 EDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351
++ PE ++ +Q ++GRPNVGKS+L+NA+L E+RV+
Sbjct: 164 KN---------------------IPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI 202
Query: 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-----EKGPASLSVMQSRKNLMRA 406
V AG TRD+V F Y + +VDTAG ++ K EK SV+++ K + R+
Sbjct: 203 VSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEK----YSVLRALKAIDRS 258
Query: 407 HVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456
VVA+VLD EE A E G+ +V++VNK D + +++ K +E
Sbjct: 259 EVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDEST--MKEFEE----N 312
Query: 457 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSW 516
I+ + P++F SAL + +M +I + LR+ T+ LN + + +
Sbjct: 313 IRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPT 372
Query: 517 -KDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQ 575
++ KI Y TQV +PP+FV F++ + + + RFL +++ F G PI+I
Sbjct: 373 PTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFA 432
Query: 576 RS 577
R+
Sbjct: 433 RA 434
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 3e-46
Identities = 59/176 (33%), Positives = 88/176 (50%), Gaps = 28/176 (15%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
+ V+I+GRPNVGKS+LFNRL+++R A+V + P VTRD++EG+ + RF ++D+ G
Sbjct: 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPG--VTRDLKEGVVETDRGRFLLVDTGG 58
Query: 180 LETEATSGSILDRTAGMTANVLAKTQFAI-------FMIDVRSGLHPLDLEVGKWLRKHA 232
L + + K A+ F +D R+ L D EV ++LR+
Sbjct: 59 LWSG----------DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKG 108
Query: 233 PQIKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
KP I+ K + LGFGDPI S+E G+ EL EA+
Sbjct: 109 ---KPVILVATKVDDP-----KHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAI 156
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 1e-17
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 13/128 (10%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386
+ IVGRPNVGKS+L N LL++ +V G+TRD E LVDT G
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL---W 60
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEE-VRAVEE---------GRGLVVIVNKMDL 436
+ + L A VV +D + + G+ ++++ K+D
Sbjct: 61 SGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDD 120
Query: 437 LSGRQNSA 444
Sbjct: 121 PKHELYLG 128
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-27
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 45/174 (25%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++ I GRPN GKS+LLNAL + +V AG TRD +R H G ++++DTAG
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG--L 62
Query: 385 R------EKEKGPASLSVMQSRKNLMRAHVVALVLDA-------------EEVRAVEEGR 425
R E+ G + ++ + + +A V ++D E + +
Sbjct: 63 REASDEVERI-G-----IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKL 116
Query: 426 GLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ V+ NK D+ + +V G ++ SA G G
Sbjct: 117 PITVVRNKADITGE------------------TLGMSEVNGHALIRLSARTGEG 152
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 1e-19
Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 24/175 (13%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
+ V I GRPN GKS+L N L R A+V + TRD+ + + ++D+AG
Sbjct: 5 MKVV-IAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGMPLHIIDTAG 61
Query: 180 L-ETEATSGSILDR--TAGM--TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQ 234
L E D G+ + + +FM+D + E+ P
Sbjct: 62 LREAS-------DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA 114
Query: 235 IKP-IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
P V NK + + G + I +SA TG G+ L L+
Sbjct: 115 KLPITVVRNKAD--------ITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLK 161
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 8e-27
Identities = 47/171 (27%), Positives = 68/171 (39%), Gaps = 36/171 (21%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+ I G+PN GKSTLLN LL ++R +V G TRD + F + L DTAG
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAG--L 291
Query: 385 REK----EKGPASLSVMQSRKNLMRAHVVALVLDA------------EEVRAVEEGRGLV 428
RE E + +SR + A ++ +LD E++A +
Sbjct: 292 REAGEEIEH----EGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFL 347
Query: 429 VIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ NK+D + + I TG V+ SAL G G
Sbjct: 348 TVANKLDRAA--------------NADALIRAIADGTGTEVIGISALNGDG 384
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-18
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
+ TV I G+PN GKS L N L+ + A+V + P TRD E F++ D+AG
Sbjct: 234 VSTV-IAGKPNAGKSTLLNTLLGQERAIVSHMPG--TTRDYIEECFIHDKTMFRLTDTAG 290
Query: 180 L-ETEATSGSILDRTAGM--TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK 236
L E G+ + +A+ ++++D+ + +L + L+ P K
Sbjct: 291 LREAGEEIEHE-----GIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAK 345
Query: 237 PIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
+ NK + + + I ISA G G+ L + +
Sbjct: 346 FLTVANKLDR----AANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMG 393
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-26
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 33/168 (19%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L++ IVG+PNVGKSTLLN LL EDR +V G TRD + +G +VDTAG
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG--V 301
Query: 385 REK-----EKGPASLSVMQSRKNLMRAHVVALVLDA--------EEVRAVEEGRGLVVIV 431
R + E+ L + ++ + + +A +V VLDA ++ + + +V++
Sbjct: 302 RSETNDLVER----LGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVI 357
Query: 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
NK+D++ + ++ +V SAL+G G
Sbjct: 358 NKVDVVEKINEEEIKNKLGT--------------DRHMVKISALKGEG 391
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 7e-17
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
L V I+G+PNVGKS L NRL+ A+V + P TRD+ + + F+++D+AG
Sbjct: 244 LRMV-IVGKPNVGKSTLLNRLLNEDRAIVTDIPG--TTRDVISEEIVIRGILFRIVDTAG 300
Query: 180 L--ETEATSGSILDRTAGM--TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI 235
+ ET + G+ T + K +F++D S L D + + +
Sbjct: 301 VRSETNDLVERL-----GIERTLQEIEKADIVLFVLDASSPLDEEDRK----ILERIKNK 351
Query: 236 KPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDY 294
+ +V +NK + + + ++ + + ISA G G+ +L E++ ++
Sbjct: 352 RYLVVINKVDVV----EKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQEI 406
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-26
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 33/167 (19%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L++AIVGRPNVGKS+LLNA Q DR +V G TRD V G V ++DTAG
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAG--I 282
Query: 385 REK----EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE--------GRGLVVIVN 432
RE EK + V +SR+ A +V L +DA + R L++++N
Sbjct: 283 RETSDQVEK----IGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMN 338
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
K+DL+ Q I ++ +V T+A + +G
Sbjct: 339 KIDLVE---------------KQLITSLEYPENITQIVHTAAAQKQG 370
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-16
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 26/175 (14%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYN---TPDDHVTRDIREGLAKLGDLRFKVLD 176
L I+GRPNVGKS+L N + A+V + T TRD+ E +G + +VLD
Sbjct: 225 LKVA-IVGRPNVGKSSLLNAWSQSDRAIVTDLPGT-----TRDVVESQLVVGGIPVQVLD 278
Query: 177 SAGL-ETEATSGSILDRTAGM--TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAP 233
+AG+ ET I G+ + + ID +G D E + +
Sbjct: 279 TAGIRETSDQVEKI-----GVERSRQAANTADLVLLTIDAATGWTTGDQE----IYEQVK 329
Query: 234 QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
I+ MNK + + + + +A G+ L A+
Sbjct: 330 HRPLILVMNKIDLVEKQLI-----TSLEYPENITQIVHTAAAQKQGIDSLETAIL 379
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-26
Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 38/199 (19%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
+ T++ GR NVGKS L RL ++ P VTR I E K K++D G
Sbjct: 1 MATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPG--VTRKIIEIEWK----NHKIIDMPG 53
Query: 180 LE-TEATSGSILDRTAGMTANVLAKT----QFAIFMIDVRS-----------GLHPLDLE 223
+ +R + + A+ ++D ++ G P+D+E
Sbjct: 54 FGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVE 113
Query: 224 VGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP--------IAISAE 275
++LR+ I IVA+NK + + N L F P I ISA+
Sbjct: 114 FYQFLREL--DIPTIVAVNKLDKIKNVQ-----EVINFLAEKFEVPLSEIDKVFIPISAK 166
Query: 276 TGLGMTELYEALRPSVEDY 294
G + L + + +
Sbjct: 167 FGDNIERLKNRIFEVIRER 185
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 1e-17
Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 38/188 (20%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG--WLQR 385
GR NVGKSTL+ L + +V G G+TR + E++ ++D G ++
Sbjct: 5 IFAGRSNVGKSTLIYRLTGK-KVRRGKRPGVTRK--IIEIEWKNH--KIIDMPGFGFMMG 59
Query: 386 EKEKGPASLSVM---QSRKNLMRAHVVALVLDA---EEVRAVEEGRGL------------ 427
++ + N V LV+D E+ E RG
Sbjct: 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR 119
Query: 428 ------VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481
+V VNK+D + Q + K VP + SA G
Sbjct: 120 ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDK-------VFIPISAKFGDNIE 172
Query: 482 AVMHQVID 489
+ +++ +
Sbjct: 173 RLKNRIFE 180
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 7e-21
Identities = 24/179 (13%), Positives = 54/179 (30%), Gaps = 22/179 (12%)
Query: 311 QDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ 370
+ + + + ++G+ VGKS+ +N+L+ E V V P V V
Sbjct: 23 IEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG 82
Query: 371 GRTVYLVDTAGWL--QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE----- 423
G T+ ++DT G + + L +++ V+ V + E
Sbjct: 83 GFTINIIDTPGLVEAGYVNHQA---LELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVV 139
Query: 424 -----------GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471
++++ + + ++T+ F
Sbjct: 140 IAITQTFGKEIWCKTLLVLTHAQFSP-PDELSYETFSSKRSDSLLKTIRAGSKMRKQEF 197
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 3e-08
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 11/133 (8%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
TV+++G+ VGKS+ N LI + V +G ++D+ GL
Sbjct: 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQA--EGLRPVMVSRTMGGFTINIIDTPGL 94
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD------LEVGKWLRKHAPQ 234
+G + + + L + + R ++ +D +
Sbjct: 95 V---EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIW 151
Query: 235 IKPIVAMNKCESL 247
K ++ + +
Sbjct: 152 CKTLLVLTHAQFS 164
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 9e-21
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 25/161 (15%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT-VYLVDTAGWLQRE 386
+ GR NVGKS+ +NAL+ ++ +V AG T D V E V LVDT G +
Sbjct: 38 VVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL---D 94
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDA------EEVRAVEEGRGL--VVIVNKMDLLS 438
L V ++R+ RA LV D+ ++V + + + VV+VNK+D+L
Sbjct: 95 DVGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL- 153
Query: 439 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+E++ + V+ SAL+ +G
Sbjct: 154 ------------GEKAEELKGLYESRYEAKVLLVSALQKKG 182
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 13/167 (7%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRD-IREGLAKLGDLRFKVLDSAGLE 181
+++ GR NVGKS+ N L+ + ++V + T D + + + ++D+ GL+
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYA--GTTTDPVYKSMELHPIGPVTLVDTPGLD 94
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
G + A V + I + D P + +V ++ +I +V +
Sbjct: 95 DVGELGRLRVEKA---RRVFYRADCGILVTDSAPT--PYEDDVVNLFKEM--EIPFVVVV 147
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
NK + L L G + +SA G ++ + +
Sbjct: 148 NKIDVLGEKAEELKGLYES---RYEAKVLLVSALQKKGFDDIGKTIS 191
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 4e-16
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 308 SSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHF 367
+ ++ E L + ++G+ VGKS+ +N+++ E V + P V V
Sbjct: 23 TKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 82
Query: 368 EYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE 423
G T+ ++DT G L +L++++S V+ V + R
Sbjct: 83 SRAGFTLNIIDTPG-LIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNL 137
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T++++G+ VGKS+ N +I R + +P ++D+ GL
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSI--SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 6e-13
Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 33/167 (19%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR--VHFE-YQGRTVYLVDTAGWLQ 384
AIVG+PNVGKSTLLN LL + P TR +R + Q + VDT G L
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ---IVFVDTPG-LH 66
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDA------------EEVRAVEEGRGLVVIVN 432
+ + + + + L + V V+D ++ + ++++ N
Sbjct: 67 KPMDALGEFM-DQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 125
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
K+D E + ++P+ + SAL+ R
Sbjct: 126 KLDAAKY----------PEEAMKAYHELLPEAEPRML---SALDERQ 159
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 6e-09
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 11/168 (6%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRD-IREGLAKLGDLRFKVLDSAGLE 181
V I+G+PNVGKS L N L+ + A + P TR +R G+ G + +D+ GL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRP--QTTRKRLR-GILTEGRRQIVFVDTPGLH 66
Query: 182 TEATS-GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
+ G +D+ LA ++++D+R P D V + L+ ++ ++
Sbjct: 67 KPMDALGEFMDQEV---YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 123
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
NK ++ ++ +L +P +SA + EL L
Sbjct: 124 GNKLDAAKYPEEAMKAYHE---LLPEAEPRMLSALDERQVAELKADLL 168
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-12
Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 54/211 (25%)
Query: 208 IFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVAMNKC-----ESLHNGTGSLAGAAAES 261
+ ++D+ + +++ ++ NK H+ +A+
Sbjct: 74 VKIVDIFDFNGSWLPGLHRFVGN-----NKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQ 128
Query: 262 LMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDES 321
L L D ISA G G+ EL +A+
Sbjct: 129 LGLKPEDVFLISAAKGQGIAELADAIE-------------------------------YY 157
Query: 322 KLPLQLAIVGRPNVGKSTLLNALL------QEDRVLVGPEAGLTRDSVRVHFEYQGRTVY 375
+ + +VG NVGKST +N ++ E+ + G T D + + + +
Sbjct: 158 RGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESS--- 214
Query: 376 LVDTAGWL---QREKEKGPASLSVMQSRKNL 403
L DT G + Q G SL ++ K +
Sbjct: 215 LYDTPGIINHHQMAHYVGKQSLKLITPTKEI 245
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 11/76 (14%)
Query: 123 VMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
V ++G NVGKS NR+I+ + P T D+ + L + + D
Sbjct: 163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG--TTLDLID--IPLDE-ESSLYD 217
Query: 177 SAGLETEATSGSILDR 192
+ G+ + +
Sbjct: 218 TPGIINHHQMAHYVGK 233
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 8e-12
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 27/167 (16%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR--VHFEYQGRTVYLVDTAGWLQR 385
AIVG+PNVGKSTLLN LL ++ P+AG TR V + + + ++ +DT G +
Sbjct: 14 AIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIF-LDTPG-IYE 71
Query: 386 EKEKGPASLSVMQS-RKNLMRAHVVALVLDAEEVRAVEEGRGL-----------VVIVNK 433
K+ S+++ +++L A V+ ++DA E + +V++NK
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINK 131
Query: 434 MDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI-PVVFTSALEGRG 479
+D + + + EI P++T I P+ SAL+G
Sbjct: 132 IDKIGP-------AKNVLPLIDEIHKKHPELTEIVPI---SALKGAN 168
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 5e-07
Identities = 44/185 (23%), Positives = 66/185 (35%), Gaps = 37/185 (20%)
Query: 123 VMIIGRPNVGKSALFNRLI--------------RRREALVYNTPDDHVTRDIREGLAKLG 168
V I+G+PNVGKS L N L+ R R V N P++
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-------------A 59
Query: 169 DLRFKVLDSAGL---ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVG 225
+ F LD+ G+ + G + A L + +FMID G P D E+
Sbjct: 60 QIIF--LDTPGIYEPKKSDVLGHSMVEIA---KQSLEEADVILFMIDATEGWRPRDEEIY 114
Query: 226 KWLRKHAPQIKPIVAMNKCESLHNGTGSLAG-AAAESLMLGFGDPIAISAETGLGMTELY 284
+ K IV +NK + + L + + ISA G + EL
Sbjct: 115 QNFIKPL-NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELV 173
Query: 285 EALRP 289
+ +
Sbjct: 174 KTILK 178
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 38/233 (16%)
Query: 299 LNDSCTQNNSSTQDVTSPEDDESKLPL------QLAIVGRPNVGKSTLLNALLQEDRVLV 352
+ + + + + LP+ + I G PNVGKSTLL AL + +
Sbjct: 136 VASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKAL-TTAKPEI 194
Query: 353 GPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM-RAHVVAL 411
TR FE ++DT G L R + + Q+ L +++
Sbjct: 195 ASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISE--RNEIEKQAILALRYLGNLIIY 252
Query: 412 VLDA---------------EEVRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456
+ D EEV + +V++NK+D+ KR+++ V ++
Sbjct: 253 IFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN----IKRLEKFVKEK 308
Query: 457 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 509
G+ + SAL+G G V ++I T + ++ ++ R LR+
Sbjct: 309 ---------GLNPIKISALKGTGIDLVKEEIIKTLRPLAEKVAREKIERELRR 352
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 24/192 (12%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
+PTV+I G PNVGKS L L A TR I G + G R++++D+ G
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTT---AKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPG 223
Query: 180 LETEATSGSILDRTAGMTANVLA---KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK 236
L I +R +LA I++ D S LE L + ++
Sbjct: 224 L----LDRPISERNEIEKQAILALRYLGNLIIYIFDP-SEHCGFPLEEQIHLFE---EVH 275
Query: 237 P-------IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289
+V +NK + + + +PI ISA G G+ + E +
Sbjct: 276 GEFKDLPFLVVINKIDVA---DEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIK 332
Query: 290 SVEDYMLRVLND 301
++ +V +
Sbjct: 333 TLRPLAEKVARE 344
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 3e-11
Identities = 75/540 (13%), Positives = 150/540 (27%), Gaps = 183/540 (33%)
Query: 82 EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKIDIN-----------LL-----PTVMI 125
++ +P + + LY F K +++ LL V+I
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 126 IGRPNVGKSALFNRLIRRREALVYNTPDDHV-------TRDIREGLAKLGDLRFKVLDSA 178
G GK+ + + + V D + L L L ++ +D
Sbjct: 156 DGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ-IDPN 212
Query: 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHP-----LDLEVGKWLRKHAP 233
S +I R + + + + L V K
Sbjct: 213 WTSRSDHSSNIKLRI------HSIQAELRRLLKSKP---YENCLLVLL-NV--QNAKA-- 258
Query: 234 QIKPIVAMN-KCESL-----HNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
A N C+ L T L+ A + L + +T
Sbjct: 259 ----WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD---------HHSMTLTP----- 300
Query: 288 RPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQE 347
V+ +L+ L + QD+ P + + P +L+I+ +++
Sbjct: 301 -DEVKSLLLKYL-------DCRPQDL--PREVLTTNPRRLSIIA-----------ESIRD 339
Query: 348 DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGP----ASLSVMQSRKNL 403
++ W +K +SL+V++
Sbjct: 340 G---------------LATWDN------------WKHVNCDKLTTIIESSLNVLEP--AE 370
Query: 404 MRAHVVALVL---DA------------EEVRAVEEGRGLVVIVNKMDLLSGRQNSALYKR 448
R L + A + +++ V+VNK+ + S + K+
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-----VVVNKL-----HKYSLVEKQ 420
Query: 449 VKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQ-VIDTYQ---KWCLR-LPTSRL 503
KE IP ++ +H+ ++D Y + L L
Sbjct: 421 PKE-----------STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 504 NRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKED 563
+++ +G H + + ++ F V FL RFL + ++ D
Sbjct: 470 DQYFYSHIGHHLKNIEHPE-RMTLFRMV---------FLD---------FRFLEQKIRHD 510
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-08
Identities = 67/471 (14%), Positives = 129/471 (27%), Gaps = 133/471 (28%)
Query: 154 DHVTRDI----REGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIF 209
+ +DI + + K + D M ++L+K +
Sbjct: 15 QYQYKDILSVFEDAFVD--NFDCK--------------DVQD----MPKSILSKEEID-H 53
Query: 210 MIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 269
+I + + L K ++ V E L L P
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE----EVLRINYKFLM------------SP 97
Query: 270 IAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQ-DVTSPED-DESKLPLQ- 326
I MT +Y + R+ ND N + +V+ + + + L
Sbjct: 98 IKTEQRQPSMMTRMYI-------EQRDRLYND----NQVFAKYNVSRLQPYLKLRQALLE 146
Query: 327 ------LAIVGRPNVGKSTLLNALLQEDRVLVGPEAG---LT---RDSVRVHFEYQGRTV 374
+ I G GK+ + + +V + L +S E + +
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 375 YLVDTAGWLQREK--EKGPASLSVMQSR-KNLM--RAHVVAL-VLD----AEEVRAVEEG 424
Y +D W R + +Q+ + L+ + + L VL A+ A
Sbjct: 207 YQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 425 -RGLVVIVNK--MDLLSGRQNS--------------------ALYKRVK-EAVPQEIQTV 460
+ L+ K D LS + Y + + +P+E+ T
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 461 IPQVTGIPVVFTSALEGRGRI-AVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQ 519
P+ I I + + T+ W + +L + S
Sbjct: 326 NPRRLSI-------------IAESIRDGLATWDNW-KHVNCDKLTTIIES-----SLNVL 366
Query: 520 SAQPKIKYFTQ-------VKARPPTFVAFLSGKKTLSDAEL---RFLTKSL 560
K F + P ++ + SD + + SL
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 63.2 bits (155), Expect = 4e-11
Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 22/162 (13%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR-VHFEYQGRTVYLVDTAGWLQRE 386
AIVGRPNVGKSTLLN LL + + +A TR + +H E + +Y VDT G E
Sbjct: 12 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIY-VDTPGLHMEE 70
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE---------GRGLVVIVNKMDLL 437
K + + ++ +V V++ +E +++ VNK+D +
Sbjct: 71 KRAINRLM-NKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNV 129
Query: 438 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
K + +Q + Q+ + +V SA G
Sbjct: 130 QE----------KADLLPHLQFLASQMNFLDIVPISAETGLN 161
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 12/170 (7%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRD-IREGLAKLGDLRFKVLDSAGLE 181
+ I+GRPNVGKS L N+L+ ++ ++ TR I G+ G + +D+ GL
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKA--QTTRHRIV-GIHTEGAYQAIYVDTPGLH 67
Query: 182 TEATS--GSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV 239
E ++++ A ++ + + IF+++ P D V LR+ + I+
Sbjct: 68 MEEKRAINRLMNKAA---SSSIGDVELVIFVVEGTRW-TPDDEMVLNKLREG--KAPVIL 121
Query: 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRP 289
A+NK +++ L + + F D + ISAETGL + + +R
Sbjct: 122 AVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRK 171
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 8e-11
Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 29/181 (16%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386
+ + G PNVGKS+ +N + V V + T++ HF+++ ++DT G L R
Sbjct: 32 IILSGAPNVGKSSFMNI-VSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVL-----DAEEVRAVEE-------------GRGLV 428
E + M + L AH+ ++L + ++E + +V
Sbjct: 91 FEN--RNTIEMTTITAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIV 146
Query: 429 VIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488
+ NK+D + S K + + + ++ I S L G G
Sbjct: 147 IGFNKIDKCNMDSLSIDNKLLIKQILDNVK------NPIKFSSFSTLTGVGVEQAKITAC 200
Query: 489 D 489
+
Sbjct: 201 E 201
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 18/183 (9%)
Query: 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKV 174
I+ + T+++ G PNVGKS+ N + R V + T+++ G ++++
Sbjct: 25 INPHK-KTIILSGAPNVGKSSFMNIVSRANVD-VQSYS--FTTKNLYVGHFDHKLNKYQI 80
Query: 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAI-FMIDVRSGLHPLDLE-VGKWLRKHA 232
+D+ GL A +TA LA I F+ID+ S L ++
Sbjct: 81 IDTPGLLDRAFENRNTIEMTTITA--LAHINGVILFIIDI-SEQCGLTIKEQINLFYSIK 137
Query: 233 PQI--KP-IVAMNKC-----ESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELY 284
K ++ NK +SL L +++ + S TG+G+ +
Sbjct: 138 SVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPI-KFSSFSTLTGVGVEQAK 196
Query: 285 EAL 287
Sbjct: 197 ITA 199
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 270 IAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAI 329
++I++ G G+ ++ A + +++ R ++ I
Sbjct: 83 LSINSVNGQGLNQIVPASKEILQEKFDR-----------------MRAKGVKPRAIRALI 125
Query: 330 VGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 381
+G PNVGKSTL+N L +++ G G+T V G+ + L+DT G
Sbjct: 126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPG 174
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
+IIG PNVGKS L NRL ++ A + P +T + K+G ++LD+ G
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPG--ITTSQQW--VKVGK-ELELLDTPG 174
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 5e-10
Identities = 23/183 (12%), Positives = 48/183 (26%), Gaps = 27/183 (14%)
Query: 318 DDESKLPLQLAIVGRPNVGKSTLLNALL----QEDRVLVGPEAGLTRDSVRVHFEYQGRT 373
+ L +A+ G GKS+ +N L +E+ +T +
Sbjct: 63 KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPN 121
Query: 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE---------G 424
V D G + +++ A + +
Sbjct: 122 VVFWDLPGI-----GSTNFPPDTYLEKMKFYEYDFF-IIISATRFKKNDIDIAKAISMMK 175
Query: 425 RGLVVIVNKMD-LLSGRQNSALYKRVKEAVPQEIQTVIPQ------VTGIPVVFTSALEG 477
+ + K+D ++ + KE V Q+I+ + P+ S
Sbjct: 176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNV 235
Query: 478 RGR 480
Sbjct: 236 CHY 238
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 7e-05
Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 12/129 (9%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRR--EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSA 178
V + G GKS+ N L E T VT + D
Sbjct: 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP-YKHPNIPNVVFWDLP 128
Query: 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI 238
G+ + + ++ F+I + D+++ K + + +
Sbjct: 129 GIGSTNFPPD-------TYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMM--KKEFY 179
Query: 239 VAMNKCESL 247
K +S
Sbjct: 180 FVRTKVDSD 188
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW-- 382
+++A+ G PNVGK++L NA L + V G+T + F Y+G T+ L+D G
Sbjct: 6 VKVALAGCPNVGKTSLFNA-LTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64
Query: 383 LQREKEKGPASLSVMQSRKNLM--RAHVVALVLDAEE--------VRAVEEGRGLVVIVN 432
L G +S+ +R L+ A +V LV D+ + +E + +++ +
Sbjct: 65 L------GYSSIDEKIARDYLLKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMT 118
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492
+D +++ + GIPVVFTS++ G G + ++++ Q
Sbjct: 119 AIDEAKKTGMKIDRYELQKHL------------GIPVVFTSSVTGEGLEELKEKIVEYAQ 166
Query: 493 K 493
K
Sbjct: 167 K 167
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
V + G PNVGK++LFN L ++ V N P VT + +EG+ ++D
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQY-VANWPG--VTVEKKEGVFTYKGYTINLID 58
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 7e-10
Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW- 382
++A++G PNVGKST+ NAL E V +G G+T + FEY G +VD G
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGE-NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVY 61
Query: 383 -LQREKEKGPASLSVMQSRKNLM--RAHVVALVLDAEE--------VRAVEEGRGLVVIV 431
L S+ + +R ++ + +V ++DA ++ +E G L++ +
Sbjct: 62 SLT------ANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLAL 115
Query: 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491
NKMDL ++++ + G+ VV SA + G + +
Sbjct: 116 NKMDLAKSLGIEIDVDKLEKIL------------GVKVVPLSAAKKMGIEELKKAISIAV 163
Query: 492 Q 492
+
Sbjct: 164 K 164
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 3e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVY-IGNWPG--VTVEKKEGEFEYNGEKFKVVD 56
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Length = 260 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 9e-10
Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 19/183 (10%)
Query: 305 QNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-LTRDSV 363
QN S + S+ L++ +VG+ GKS N++L++ + LT+
Sbjct: 3 QNEHSHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCS 62
Query: 364 RVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQS-RKNLMRAHVVALVL-----DAEE 417
+ + R + ++DT + V + + HV+ LV +++
Sbjct: 63 KSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQD 122
Query: 418 VRAVEE-----GRG----LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468
+A + G +V+ + +L + ++ + + ++ G
Sbjct: 123 QQAAQRVKEIFGEDAMGHTIVLFTHKE---DLNGGSLMDYMHDSDNKALSKLVAACGGRI 179
Query: 469 VVF 471
F
Sbjct: 180 CAF 182
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 27/179 (15%)
Query: 328 AIVGRPNVGKSTLLNAL--LQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385
++G PN GK+TL NAL VG G+T + F + + D G
Sbjct: 5 LLIGNPNCGKTTLFNALTNA---NQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSL 61
Query: 386 EKEKGPASLSVMQSRKNLM--RAHVVALVLDAEE--------VRAVEEGRGLVVIVNKMD 435
S + ++++ + V+DA + E G+ +VV +N MD
Sbjct: 62 VANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMD 121
Query: 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494
+ R S ++++ + G V+ A + G A+ ++ QK
Sbjct: 122 IAEHRGISIDTEKLESLL------------GCSVIPIQAHKNIGIPALQQSLLHCSQKI 168
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
++IG PN GK+ LFN L + V N P VT + + G LG+ ++ D
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQR-VGNWPG--VTVEKKTGEFLLGEHLIEITD 54
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 35/184 (19%)
Query: 324 PLQLAIVGRPNVGKSTLLNAL--LQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 381
++A++G PNVGKST+ NAL V +G G+T + FEY G +VD G
Sbjct: 7 SYEIALIGNPNVGKSTIFNALTGE---NVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 63
Query: 382 W--LQREKEKGPASLSVMQSRKNLM--RAHVVALVLDAEE--------VRAVEEGRGLVV 429
L S+ + +R ++ + +V ++DA ++ +E G L++
Sbjct: 64 VYSL------TANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLL 117
Query: 430 IVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
+NKMDL ++++ + G+ VV SA + G + +
Sbjct: 118 ALNKMDLAKSLGIEIDVDKLEKIL------------GVKVVPLSAAKKMGIEELKKAISI 165
Query: 490 TYQK 493
+
Sbjct: 166 AVKD 169
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
+ +IG PNVGKS +FN L + N P VT + +EG + +FKV+D
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVY-IGNWPG--VTVEKKEGEFEYNGEKFKVVD 60
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 1e-09
Identities = 32/188 (17%), Positives = 72/188 (38%), Gaps = 26/188 (13%)
Query: 305 QNNSSTQDVTSPEDDESKLP----LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-LT 359
++S +++ + P L++ +VG+ GKS N++L G A +T
Sbjct: 6 HHSSGRENLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSIT 65
Query: 360 RDSVRVHFEYQGRTVYLVDTAGWL--QREKEKGPASLSVMQSRKNLMRAHVVALVL---- 413
+ + ++ + +VDT G + + + + H + LV+
Sbjct: 66 KKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI-IRCILLTSPGPHALLLVVPLGR 124
Query: 414 -DAEEVRAVEE---------GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463
EE +A E+ +++I + D ++ L+ ++EA P++IQ ++
Sbjct: 125 YTEEEHKATEKILKMFGERARSFMILIFTRKD---DLGDTNLHDYLREA-PEDIQDLMDI 180
Query: 464 VTGIPVVF 471
Sbjct: 181 FGDRYCAL 188
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 381
++ IVG PN GKST++N L + VG + G+T+ V ++DT G
Sbjct: 99 LARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPG 153
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
V+I+G PN GKS + N+L +R + V P +T+ I+ L + K+LD+ G
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPG--ITKGIQW--FSLEN-GVKILDTPG 153
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 32/179 (17%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW--LQR 385
A+VG PNVGK+T+ NAL R VG G+T + EY+ + +VD G L
Sbjct: 7 ALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSL-- 63
Query: 386 EKEKGPASLSVMQSRKNLM--RAHVVALVLDAEE--------VRAVEEG-RGLVVIVNKM 434
S+ + +R ++ A V+ ++D+ + E + +++++NK
Sbjct: 64 ----TAHSIDELIARNFILDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKF 119
Query: 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493
DLL + K++++ + G+PV+ T+A +G G + + +
Sbjct: 120 DLLKKKGAKIDIKKMRKEL------------GVPVIPTNAKKGEGVEELKRMIALMAEG 166
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
TV ++G PNVGK+ +FN L R+ V N P VT + +EG+ + + F V+D
Sbjct: 5 TVALVGNPNVGKTTIFNALTGLRQH-VGNWPG--VTVEKKEGIMEYREKEFLVVD 56
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 32/182 (17%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW- 382
++A++G PN GK++L N + VG G+T + + + + + D G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGH-NQRVGNWPGVTVERKSGLV-KKNKDLEIQDLPGIY 60
Query: 383 -LQREKEKGPASLSVMQSRKNLM--RAHVVALVLDAEE--------VRAVEEGRGLVVIV 431
+ P S +R L+ RA + V+DA + +E G + + +
Sbjct: 61 SM------SPYSPEAKVARDYLLSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIAL 114
Query: 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491
N +D+L G+ ++ + G+PVV TSAL+ G V+ + T
Sbjct: 115 NMIDVLDGQGKKINVDKLSYHL------------GVPVVATSALKQTGVDQVVKKAAHTT 162
Query: 492 QK 493
Sbjct: 163 TS 164
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 38/193 (19%), Positives = 67/193 (34%), Gaps = 49/193 (25%)
Query: 324 PLQLAIVGRPNVGKSTLLNALL---QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVD-- 378
L + ++G PN GK+TL N L Q VG AG+T + F V LVD
Sbjct: 3 KLTIGLIGNPNSGKTTLFNQLTGSRQR----VGNWAGVTVERKEGQFSTTDHQVTLVDLP 58
Query: 379 --------TAGWLQREKEKGPASLSVMQSRKNLM--RAHVVALVLDAEEVR--------A 420
++ E+ + + ++ A ++ V+DA +
Sbjct: 59 GTYSLTTISSQTSLDEQ--------I--ACHYILSGDADLLINVVDASNLERNLYLTLQL 108
Query: 421 VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGR 480
+E G +V +N +D+ + + + G PV+ + GRG
Sbjct: 109 LELGIPCIVALNMLDIAEKQNIRIEIDALSARL------------GCPVIPLVSTRGRGI 156
Query: 481 IAVMHQVIDTYQK 493
A+ +
Sbjct: 157 EALKLAIDRYKAN 169
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
T+ +IG PN GK+ LFN+L R+ V N VT + +EG D + ++D
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQR-VGNWAG--VTVERKEGQFSTTDHQVTLVD 56
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 39/122 (31%)
Query: 270 IAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAI 329
+SA G+GM ++ EA+ + + +
Sbjct: 139 CLVSAAKGIGMAKVMEAINRY-------------------------------REGGDVYV 167
Query: 330 VGRPNVGKSTLLNALLQE-----DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
VG NVGKST +N +++E + + G T D + + E L DT G +
Sbjct: 168 VGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIIN 224
Query: 385 RE 386
Sbjct: 225 HH 226
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 37/201 (18%), Positives = 70/201 (34%), Gaps = 42/201 (20%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR-------VHF- 367
P P ++A GR N GKST +N L + L S +F
Sbjct: 25 PPTV---QP-EIAFAGRSNAGKSTAINVLCN--------QKRLAFASKTPGRTQHINYFS 72
Query: 368 --EYQGRTVYLVDTAGW-----LQREKEK-GPASLSVMQSRKNLMRAHVVALV------- 412
+LVD G+ K S +Q+R L ++ ++
Sbjct: 73 VGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCG--MILMMDARRPLT 130
Query: 413 -LDAEEVR-AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470
LD + G+ + ++ K D L+ +++ + ++++ + V
Sbjct: 131 ELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAG--KLTVQ 188
Query: 471 FTSALEGRGRIAVMHQVIDTY 491
SAL+ G H +I+++
Sbjct: 189 LFSALKRTGLDDA-HALIESW 208
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 36/192 (18%), Positives = 56/192 (29%), Gaps = 39/192 (20%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRRE-ALVYNTPDDHVTRDI---REGLAKLGDLRF--- 172
P + GR N GKS N L ++ A TP T+ I G A
Sbjct: 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGR--TQHINYFSVGPAAEPVAHLVDL 86
Query: 173 ------KVLDSAGLETEATSGSILDRTAGMTANVLAKTQ---FAIFMIDVRSGLHPLDLE 223
+V G+ + ++ L I M+D R L LD
Sbjct: 87 PGYGYAEV-----------PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRR 135
Query: 224 VGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA--------GAAAESLMLGFGDPIAISAE 275
+ +W + KC+ L A A ++ G SA
Sbjct: 136 MIEWFAPTG--KPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSAL 193
Query: 276 TGLGMTELYEAL 287
G+ + + +
Sbjct: 194 KRTGLDDAHALI 205
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 49/198 (24%), Positives = 76/198 (38%), Gaps = 45/198 (22%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR-------VHFE 368
P D ++A GR N GKS+ LN L + L R S FE
Sbjct: 22 PSDT---GI-EVAFAGRSNAGKSSALNTLTN--------QKSLARTSKTPGRTQLINLFE 69
Query: 369 YQGRTVYLVDTAGW-----LQREKEK-GPASLSVMQSRKNLMRAHVVALV--------LD 414
LVD G+ + K K A ++ R++L +V L+ LD
Sbjct: 70 V-ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQG--LVVLMDIRHPLKDLD 126
Query: 415 AEEVR-AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473
+ + AV+ ++V++ K D L+ A V+EAV V V S
Sbjct: 127 QQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV-------QVETFS 179
Query: 474 ALEGRGRIAVMHQVIDTY 491
+L+ +G + Q +DT+
Sbjct: 180 SLKKQGVDKL-RQKLDTW 196
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 207 AIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF 266
+ ++D+R L LD ++ +W I +V + K + L +G +L F
Sbjct: 112 LVVLMDIRHPLKDLDQQMIEWAVDSN--IAVLVLLTKADKLASGARKAQLNMVREAVLAF 169
Query: 267 GD---PIAISAETGLGMTELYEAL 287
S+ G+ +L + L
Sbjct: 170 NGDVQVETFSSLKKQGVDKLRQKL 193
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-06
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 32/180 (17%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY 375
P ++A VGR NVGKS+LLNAL V G TR + + Y
Sbjct: 19 PPPL---KG-EVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTR--SINFYLVNSK-YY 71
Query: 376 LVDTAGW-----LQREKEK-GPASLSVMQSRKNLMRAHVVALV--------LDAEEVR-A 420
VD G+ ++E+ ++R +L V LV D V
Sbjct: 72 FVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQM--VFLLVDGRIPPQDSDLMMVEWM 129
Query: 421 VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGR 480
+++ KMD + S K+++ E + V + ++ TS++ G G
Sbjct: 130 KSLNIPFTIVLTKMDKVK---MSERAKKLE-----EHRKVFSKYGEYTIIPTSSVTGEGI 181
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 207 AIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF 266
++D R DL + +W++ I + + K + + + + +
Sbjct: 108 VFLLVDGRIPPQDSDLMMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKY 165
Query: 267 GDP--IAISAETGLGMTELYEALRPSVED 293
G+ I S+ TG G++EL + + +++
Sbjct: 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 53/191 (27%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVR-------VHFE 368
PE LP ++A+ GR NVGKS+ +N+L+ L R S + +
Sbjct: 19 PEGG---LP-EIALAGRSNVGKSSFINSLIN--------RKNLARTSSKPGKTQTLNFYI 66
Query: 369 YQGRTVYLVDTAGWL---------QREKEK-GPASLSVMQSRKNLMRAHVVALV------ 412
++ VD + + E+E G + + +R+ L VV +V
Sbjct: 67 INDE-LHFVD----VPGYGFAKVSKSEREAWGRMIETYITTREELKA--VVQIVDLRHAP 119
Query: 413 --LDAEEVR-AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469
D + G ++VI K D + K K ++ + +
Sbjct: 120 SNDDVQMYEFLKYYGIPVIVIATKADKIP---KGKWDKHAK-----VVRQTLNIDPEDEL 171
Query: 470 VFTSALEGRGR 480
+ S+ +G+
Sbjct: 172 ILFSSETKKGK 182
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A Length = 364 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 36/175 (20%)
Query: 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL--TRDSVRVHFEYQGRTVYLVDTAGWL 383
+ IVG N GK++L N+L V + L T R R + LVDT G++
Sbjct: 181 SIGIVGYTNSGKTSLFNSLTGLT-QKV--DTKLFTTMSPKRYAIPINNRKIMLVDTVGFI 237
Query: 384 QREKEKGPASLSVMQSRKNL---MRAHVVALVLDA--------EEVRAVEE--------G 424
+ P + V L + + LV+D+ E +++ E G
Sbjct: 238 R----GIPPQI-VDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG 292
Query: 425 RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ ++V +NK+D ++G L + E + +E+ + I V+ SAL+
Sbjct: 293 KPILVTLNKIDKINGDLYKKL--DLVEKLSKELYSPIF-----DVIPISALKRTN 340
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 27/201 (13%), Positives = 66/201 (32%), Gaps = 26/201 (12%)
Query: 305 QNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQ----EDRVLVGPEAGLTR 360
++SS ++ + + ++ L +G GKS++ + + + + T
Sbjct: 5 HHHSSGRENLYFQGSKPRILL----MGLRRSGKSSIQKVVFHKMSPNETLFLES----TN 56
Query: 361 DSVRVHFEYQG-RTVYLVDTAG-------WLQREK--EKGPASLSVMQSRKNLMRAHVVA 410
+ + D G E A + V+ ++ + M A +
Sbjct: 57 KIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEA-LTR 115
Query: 411 LVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470
L + + V V ++K+D LS + + + ++ + +
Sbjct: 116 LHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY 175
Query: 471 FTSALEGRGRIA---VMHQVI 488
TS + A V+ ++I
Sbjct: 176 LTSIYDHSIFEAFSKVVQKLI 196
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Length = 397 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
+++ +VG+PNVGKST +A
Sbjct: 1 MEIGVVGKPNVGKSTFFSAA 20
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 6e-05
Identities = 21/156 (13%), Positives = 56/156 (35%), Gaps = 9/156 (5%)
Query: 329 IVGRPNVGKSTLLNALLQ----EDRVLVGPEAGLTRDSVRVHFEYQ----GRTVYLVDTA 380
++G GKS++ + D + + + + + + + + +
Sbjct: 4 LMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPS 63
Query: 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGR 440
+R + A + V+ S+ + A + L + E V + V+++K+D LS
Sbjct: 64 YDSERLFKSVGALVYVIDSQDEYINA-ITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED 122
Query: 441 QNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 476
+ + + +E+ + + TS +
Sbjct: 123 FKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD 158
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Length = 368 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 8e-05
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L + IVG PNVGKSTL NAL
Sbjct: 2 LAVGIVGLPNVGKSTLFNAL 21
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Length = 363 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
+ IVG PNVGKSTL NAL
Sbjct: 3 FKCGIVGLPNVGKSTLFNAL 22
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Length = 392 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L+ IVG PNVGKST A+
Sbjct: 21 LKTGIVGMPNVGKSTFFRAI 40
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Length = 396 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L++ IVG PNVGKST N L
Sbjct: 23 LKIGIVGLPNVGKSTFFNVL 42
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 5e-04
Identities = 33/224 (14%), Positives = 72/224 (32%), Gaps = 61/224 (27%)
Query: 311 QDVTSPEDDESKL--PLQLAIVGRPNVGKSTLLNALLQED--RVLVGPEA---------- 356
SP +++ + + G+ + GK++ + LL+++ VGPE
Sbjct: 50 GSFHSPALEDADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMH 109
Query: 357 ----------GLTRDSVRVHFEYQG----------------------RTVYLVDTAGWLQ 384
L D ++ ++ ++DT G L
Sbjct: 110 GETEGTVPGNALVVDP---EKPFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILS 166
Query: 385 REKEKGPASLSVMQSRKNLM-RAHVVALVLDA------EEVRAV-----EEGRGLVVIVN 432
K++ + R ++ L+ DA +E + V++N
Sbjct: 167 GAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLN 226
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 476
K D++ +Q +Y + A+ + + T I ++ L
Sbjct: 227 KADMVETQQLMRVYGALMWALGKVVGTPEVLRVYIGSFWSQPLL 270
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 7e-04
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 308 SSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 356
+D+T + + +L ++G GKST LNAL+ E+ +
Sbjct: 53 RDIEDITIASKNLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNP 101
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 607 | |||
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 100.0 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 100.0 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 100.0 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.95 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.91 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.9 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.89 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.89 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.89 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.88 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.88 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.88 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.88 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.88 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.88 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.88 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.88 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.88 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.88 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.87 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.87 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.87 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.87 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.87 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.87 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.87 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.87 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.86 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.86 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.86 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.86 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 99.86 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.86 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.86 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.86 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.86 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.86 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.86 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.86 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.86 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.86 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.86 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.86 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.86 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.86 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.86 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.85 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.85 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.85 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.85 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.85 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.85 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.85 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.85 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.85 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.85 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.85 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.85 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.85 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.85 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.85 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.85 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.85 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.85 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.85 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.85 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.85 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.85 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.85 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.85 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.85 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.85 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.85 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.85 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.85 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.85 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.85 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.85 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.85 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.85 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.85 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.85 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.85 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.85 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.85 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.85 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.84 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.84 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.84 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.84 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.84 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.84 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.84 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.84 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.84 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.84 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.84 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.84 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.84 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.84 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.84 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.84 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.84 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.84 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.84 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.84 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.83 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.83 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.83 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.83 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.83 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.83 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.83 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.83 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.83 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.83 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.83 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.83 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.83 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.83 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.83 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.83 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.83 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.83 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.83 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.83 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.83 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.83 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.83 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.83 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.83 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.83 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.83 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.83 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.83 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.83 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.83 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.83 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.83 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.83 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.82 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.82 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.82 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.82 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.82 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.82 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.82 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.82 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.82 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.82 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.82 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.82 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.82 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.82 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.82 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.82 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.82 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.82 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.82 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.82 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.82 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.82 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.82 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.82 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.82 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.82 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.82 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.82 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.82 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.82 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.82 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.82 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.82 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.82 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.82 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.82 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.82 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.82 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.82 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.82 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.82 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.82 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.82 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.82 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.82 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.81 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.81 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.81 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.81 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.81 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.81 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.81 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.81 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.81 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.81 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.81 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.81 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.81 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.81 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.81 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.81 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.81 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.81 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.81 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.81 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.81 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.81 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.81 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.81 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.81 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.81 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.81 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.81 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.8 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.8 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.8 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.8 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.8 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.8 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.8 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.8 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.8 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.8 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.8 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.8 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.8 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.8 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.8 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.8 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.8 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.8 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.79 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.79 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.79 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.79 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.79 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.79 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.79 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.79 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.79 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.66 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.79 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.79 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.78 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.78 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.78 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.78 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.78 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.78 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.78 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.78 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.78 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.78 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.77 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.77 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.77 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 99.77 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.77 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.77 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.77 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.77 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.77 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.77 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.76 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.76 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.76 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.76 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.76 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.62 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.75 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.75 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.75 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.75 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.74 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.74 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.74 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.74 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.73 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.73 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.73 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.73 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.73 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.73 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.73 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.72 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.72 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.72 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.72 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.72 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.72 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.72 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.72 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.71 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.71 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.71 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.71 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.71 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.71 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.71 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.71 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.71 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.7 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.7 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.69 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.69 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.69 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.69 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.69 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.69 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.69 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.68 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.68 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.68 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.68 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.68 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.68 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.68 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.67 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.67 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.67 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.67 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.67 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.67 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.67 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.67 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.67 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.66 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.66 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.66 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.66 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.65 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.65 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.65 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.65 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.64 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.64 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.64 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.64 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.63 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.63 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.63 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.63 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.63 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.63 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.63 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.62 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.62 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.62 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.62 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.62 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.61 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.6 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.6 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.6 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.6 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.6 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.59 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.59 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.59 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.58 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.58 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.58 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.58 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.57 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.56 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.56 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.56 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.56 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.55 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.55 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.55 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.54 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.54 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.53 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.53 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.52 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.52 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.51 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.5 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.49 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.48 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.48 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.47 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.47 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.44 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.44 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.43 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.43 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.42 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.38 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.38 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.38 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.36 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.35 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.35 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.34 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.33 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.33 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.29 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.29 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.26 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.25 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.24 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.18 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 99.17 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.12 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.08 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.07 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.07 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.05 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.0 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.98 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.96 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.95 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.9 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 98.88 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 98.87 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.86 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.85 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 98.84 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.82 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.8 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.77 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.74 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.72 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.71 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.69 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 98.69 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 98.68 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.68 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.64 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.63 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.62 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 98.6 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.6 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.58 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.5 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.45 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.33 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.26 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 98.16 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.14 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.13 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.12 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.96 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.81 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.78 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.77 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 97.73 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.68 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 97.61 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 97.59 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.59 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.51 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.49 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.46 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.42 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.39 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.34 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.3 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.29 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.29 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.14 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.06 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.05 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.03 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.92 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.72 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.71 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.7 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 96.69 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.52 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.45 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.36 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.22 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 96.15 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.15 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 96.14 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 95.85 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.81 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 95.77 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 95.58 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 95.47 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 95.47 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.34 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.27 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.24 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.17 | |
| 3kjh_A | 254 | CO dehydrogenase/acetyl-COA synthase complex, acce | 94.98 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 94.94 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 94.92 | |
| 1ihu_A | 589 | Arsenical pump-driving ATPase; aluminum fluoride, | 94.84 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.79 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 94.7 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 94.66 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 94.62 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 94.61 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 94.58 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 94.53 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 94.49 |
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-74 Score=625.78 Aligned_cols=421 Identities=33% Similarity=0.525 Sum_probs=332.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|||+||||||||+|+|++.+.+++.+.+| +|+|..+..+.+.+..+.+|||||+..... .+..++..++..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g--~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~ 78 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEI 78 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-------------CEEEECTTCSSCCEEEC-----------CHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCC--CccceEEEEEEECCceEEEEECCCCCCcch--hHHHHHHHHHHH
Confidence 4789999999999999999999998888899998 999999999999999999999999974322 244467778888
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
++++||++|+|+|++++.+..+.++.+++++. ++|+++|+||+|+...... ..+++.+++++++++||++|.|
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~--~~pvilv~NK~D~~~~~~~-----~~~~~~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMRAN-----IYDFYSLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC--CSCEEEEEECCCC-----C-----CCSSGGGSSCCCEECBTTTTBT
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCccchhh-----HHHHHHcCCCCeEEEeCcCCCC
Confidence 99999999999999999999998888888765 7899999999998764221 1234567777899999999999
Q ss_pred hHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce
Q 007334 280 MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 359 (607)
Q Consensus 280 i~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT 359 (607)
+++|++.|.+.+++. . +..+....++|+++|+||||||||+|+|++.+...+++++|||
T Consensus 152 v~~L~~~i~~~l~~~-------------------~--~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT 210 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNI-------------------P--ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 210 (436)
T ss_dssp HHHHHHHHHHTGGGC-------------------C--SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------
T ss_pred hHHHHHHHHHhcCcc-------------------c--cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCce
Confidence 999999998877531 0 0001224589999999999999999999999888899999999
Q ss_pred eeeEEEEEEEcCeEEEEEecCCCcccc-cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE
Q 007334 360 RDSVRVHFEYQGRTVYLVDTAGWLQRE-KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV 428 (607)
Q Consensus 360 ~~~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i 428 (607)
+|.....+.+++..+.||||||+.+.. ..+..+.+...++..+++.||++|+|+|++++ .....++|+|
T Consensus 211 ~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~ii 290 (436)
T 2hjg_A 211 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV 290 (436)
T ss_dssp ---CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE
T ss_pred eeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEE
Confidence 999988999999999999999987763 23456778888888899999999999999885 2345689999
Q ss_pred EEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 007334 429 VIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLR 508 (607)
Q Consensus 429 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~ 508 (607)
+|+||||+.+..... .+. +..++.+.+....++|++++||++|.|++++|+.+.+.+.++..+++|+.||+||.
T Consensus 291 iv~NK~Dl~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ln~~l~ 364 (436)
T 2hjg_A 291 IVVNKWDAVDKDEST--MKE----FEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIM 364 (436)
T ss_dssp EEEECGGGSCCCTTH--HHH----HHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred EEEECccCCCcchHH--HHH----HHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 999999998653321 111 22334445555567899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeec
Q 007334 509 KVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSV 578 (607)
Q Consensus 509 ~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~ 578 (607)
+++..+|+| ..++++|++|++|+..+||+|++|+|.|+.++++|+|||+|+||+.|||.|+||+|+||.+
T Consensus 365 ~~~~~~~pp~~~~~~~~i~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~~ 435 (436)
T 2hjg_A 365 DAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARAR 435 (436)
T ss_dssp HHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGCCHHHHHHHHHHHHHHHCCTTSCCEEEEEEC
T ss_pred HHHHhCCCCccCCcceeEEeEecCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHcCCCceeEEEEEecC
Confidence 999999887 5789999999999999999999999999999999999999999999999999999999965
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-72 Score=607.01 Aligned_cols=421 Identities=33% Similarity=0.523 Sum_probs=337.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|||+||||||||+|+|++.+.+.+.+.+| +|++..+..+.+.+..+.+|||||+.... +....++..++..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g--~t~~~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPG--VTRDRIYSSAEWLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEI 98 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-------------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC--cceeEEEEEEEECCceEEEEECCCCCCcc--hHHHHHHHHHHHh
Confidence 5899999999999999999999998888888998 99999999999999999999999987322 2234467778888
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
++..||++|+|+|++++.+..+.++.+++++. ++|+++|+||+|+.... ....+++.+++++++++||++|.|
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~--~~pvilV~NK~D~~~~~-----~~~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMR-----ANIYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC--CSCEEEEEECC--------------CCSGGGSSSSEEECCTTTCTT
T ss_pred hHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc--CCCEEEEEECccchhhh-----hhHHHHHHcCCCceEEeecccccc
Confidence 99999999999999999999999999999875 88999999999987532 223345677888899999999999
Q ss_pred hHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce
Q 007334 280 MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 359 (607)
Q Consensus 280 i~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT 359 (607)
+++|++.+.+.++.. . ........++|+++|.+|||||||+|+|++.+...+++++|||
T Consensus 172 v~~L~~~i~~~l~~~-----------~----------~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt 230 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNI-----------P----------ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 230 (456)
T ss_dssp HHHHHHHHHTTGGGS-----------C----------SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-----
T ss_pred hHHHHHHHHhhcccc-----------c----------ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeE
Confidence 999999998766431 0 0011224689999999999999999999998889999999999
Q ss_pred eeeEEEEEEEcCeEEEEEecCCCccc-ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEE
Q 007334 360 RDSVRVHFEYQGRTVYLVDTAGWLQR-EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLV 428 (607)
Q Consensus 360 ~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~i 428 (607)
++.....+.+++..+.||||||+.+. ......+.+....+..+++.||++|+|+|++++ .....++|+|
T Consensus 231 ~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~i 310 (456)
T 4dcu_A 231 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV 310 (456)
T ss_dssp -CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE
T ss_pred EEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE
Confidence 99988889999999999999999876 334456788888888899999999999999885 2345789999
Q ss_pred EEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 007334 429 VIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLR 508 (607)
Q Consensus 429 vv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~ 508 (607)
+|+||||+.+.... ..+.+ .+.+.+.+....++|++++||++|.|++++|+.+.+.+.++..+++++.||+|+.
T Consensus 311 lv~NK~Dl~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~ln~~l~ 384 (456)
T 4dcu_A 311 IVVNKWDAVDKDES--TMKEF----EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIM 384 (456)
T ss_dssp EEEECGGGSCCCSS--HHHHH----HHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred EEEEChhcCCCchH--HHHHH----HHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 99999999865332 11222 2334444555567899999999999999999999999999999999999999999
Q ss_pred HHHHhCCCC-CCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhhCCCCceeEEEEEeec
Q 007334 509 KVMGRHSWK-DQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKEDFDLGGIPIRITQRSV 578 (607)
Q Consensus 509 ~~~~~~~~~-~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~~~~~g~pi~~~~~~~ 578 (607)
+++..+++| ..++++|++|++|+..+||+|++|+|.|+.++++|+|||+|+||+.|||.|+||+|.||.+
T Consensus 385 ~~~~~~~pp~~~~~~~ki~y~~q~~~~pp~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~g~p~~~~~~~~ 455 (456)
T 4dcu_A 385 DAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARAR 455 (456)
T ss_dssp HHHHHSCCCEETTEECCEEEEEEEETTTTEEEEEESCGGGSCHHHHHHHHHHHHHHHCCTTCCCEEEEEC-
T ss_pred HHHHhCCCCCCCCceeeEEEEecCCCCCCEEEEEecCcccCCHHHHHHHHHHHHHhCCCCceeEEEEEecC
Confidence 999988887 5789999999999999999999999999999999999999999999999999999999965
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-70 Score=594.86 Aligned_cols=423 Identities=31% Similarity=0.502 Sum_probs=330.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
|+|+|||+||||||||+|+|++.+.+++++.|| +|+|..++.+.+.+..+.+|||||++.... +.+...+..++..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g--~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEG--VTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCC--CccceeeEEEEECCeEEEEEECCCcccccc-chHHHHHHHHHHHH
Confidence 789999999999999999999998888899998 999999999999999999999999984321 11223466778889
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH-HHHHhcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA-AESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~-~~~~~~~~~~~i~iSA~~g~g 279 (607)
+++||++++|+|++++.+..+.++.+|+++. ++|+++|+||+|+... ..... .+++.+++.+++++||++|.|
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~--~~p~ilv~NK~D~~~~----~~~~~~~~~~~lg~~~~~~iSA~~g~g 152 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLRE----FEREVKPELYSLGFGEPIPVSAEHNIN 152 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHH----HHHHTHHHHGGGSSCSCEECBTTTTBS
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccc----cHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 9999999999999999999998899999876 7899999999998642 01222 455678887899999999999
Q ss_pred hHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce
Q 007334 280 MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT 359 (607)
Q Consensus 280 i~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT 359 (607)
+++|++.|.+.+++.. .. ..+..+....++|+++|+||||||||+|+|+|.....+++++|+|
T Consensus 153 v~~L~~~i~~~l~~~~---------~~--------~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT 215 (439)
T 1mky_A 153 LDTMLETIIKKLEEKG---------LD--------LESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT 215 (439)
T ss_dssp HHHHHHHHHHHHHHTT---------CC--------SSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC---
T ss_pred HHHHHHHHHHhccccc---------cc--------chhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCc
Confidence 9999999988775410 00 000001123589999999999999999999999888999999999
Q ss_pred eeeEEEEEEEcCeEEEEEecCCCcccccc--cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcE
Q 007334 360 RDSVRVHFEYQGRTVYLVDTAGWLQREKE--KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGL 427 (607)
Q Consensus 360 ~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ 427 (607)
+++..+.+.++|..+.+|||||+.+.... ...+.+....+..++..+|++++|+|++++ .....++|+
T Consensus 216 ~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ 295 (439)
T 1mky_A 216 RDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRAS 295 (439)
T ss_dssp ---CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE
T ss_pred CCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999998655221 223445556667788999999999999864 223468999
Q ss_pred EEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 007334 428 VVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWL 507 (607)
Q Consensus 428 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l 507 (607)
++|+||||+.+.... ..+. +...+.+.+....++|++++||++|.|++++|+.+.+.+.++..+++|+.||+||
T Consensus 296 ilv~NK~Dl~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l 369 (439)
T 1mky_A 296 VVVFNKWDLVVHREK--RYDE----FTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSAL 369 (439)
T ss_dssp EEEEECGGGSTTGGG--CHHH----HHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred EEEEECccCCCchhh--HHHH----HHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 999999999865321 1111 2223444455556789999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHh-hCCCCceeEEEEEeec
Q 007334 508 RKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKE-DFDLGGIPIRITQRSV 578 (607)
Q Consensus 508 ~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~-~~~~~g~pi~~~~~~~ 578 (607)
.+++..+++| +++|++|++|+..+||+|++|+|.++.++++|+|||+|+||+ .|+|.|+||++.||.+
T Consensus 370 ~~~~~~~~~~---~~~ki~y~~q~~~~p~~~~~~~n~~~~~~~~y~r~l~~~~r~~~~~~~~~pi~~~~~~~ 438 (439)
T 1mky_A 370 QKVLAFTNLP---RGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRS 438 (439)
T ss_dssp HHHHTTCCCS---TTCCEEEEEEEETTTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEEEEC
T ss_pred HHHHHcCCCC---CCcEEEEEEecCCCCCEEEEEEcCcccCCHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 9999988877 889999999999999999999999999999999999999999 9999999999999965
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-28 Score=257.42 Aligned_cols=252 Identities=16% Similarity=0.103 Sum_probs=166.3
Q ss_pred CCCCcchhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccccc------cCccCCCCCCCCCCccccccccccc
Q 007334 33 NLCKPFNFTLNNYSHIRASAAGSLYQVGSSLKCNLLPEVPRGFCGVVQN------EALEDTHVEPEPDGVVEDHKVKPLY 106 (607)
Q Consensus 33 ~~~~~~~~~l~~~~~~~~~~~~~~~qv~la~l~~~~~~~~~~~~~~~~~------~g~g~~~~~~~~~~~~~~~~~~~l~ 106 (607)
+..+.+..+|.. .+.||.+.++++|+++|++.|.+|++ +.|.+++++ +|+|++.++.+++.+ +.++..++
T Consensus 82 ~v~dr~~lil~i-~~~ra~t~~~~~q~~la~l~~~~~rl-~~~~~l~~~~~~i~~~g~ge~~~e~~~~~~--~~~i~~l~ 157 (364)
T 2qtf_A 82 EVLDKILLLLEI-FALHAGSKEAKMQIELARLKYELPII-KETYTKSKIGEQQGPLGAGTYGVESTIKFY--KRRINKLM 157 (364)
T ss_dssp EEECHHHHHHHH-HHHHCCSHHHHHHHHHHHHHHHHHHH-HHC---------------------CHHHHH--HHHHHHHH
T ss_pred ceeehHhHHHHH-HHhhCcccchhHHHHHHHHhhhchhh-hhhhHHHHhcCCCCcCCcCHHHHHHHHHHH--HHHHHHHH
Confidence 345555556555 56889999988999999999999999 889888877 578899999888888 78888877
Q ss_pred cCCccccc--------ccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCC
Q 007334 107 EKPVDFTK--------IDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSA 178 (607)
Q Consensus 107 ~~~~~~~~--------~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTp 178 (607)
+++..+.+ +.+.+.+.|+|+|++|||||||+|+|++... .+.+.++ +|+|...+.+.+.+..+.+||||
T Consensus 158 ~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~--~T~d~~~~~i~~~g~~v~l~DT~ 234 (364)
T 2qtf_A 158 KELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLF--TTMSPKRYAIPINNRKIMLVDTV 234 (364)
T ss_dssp HHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC--------------CCSCEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcc--cccCCEEEEEEECCEEEEEEeCC
Confidence 76654432 2234567799999999999999999998764 5666777 89999999999999999999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC--CHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcH
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL--HPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~--~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
|+....+++.. +.+..+...+..+|++++|+|++++. ..... .+.+++... ..+.|+++|+||+|+........
T Consensus 235 G~i~~lp~~lv--e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~ 312 (364)
T 2qtf_A 235 GFIRGIPPQIV--DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKK 312 (364)
T ss_dssp CBCSSCCGGGH--HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHH
T ss_pred CchhcCCHHHH--HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHH
Confidence 99766565443 33556777899999999999998875 22222 244556554 24789999999999976431100
Q ss_pred HHHH-HHHHhc-C-CCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 255 AGAA-AESLML-G-FGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 255 ~~~~-~~~~~~-~-~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.... .....+ . ..+++++||++|.|+++|++.|.+.+..
T Consensus 313 ~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 313 LDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 0111 111222 1 1156899999999999999999887654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=217.53 Aligned_cols=190 Identities=18% Similarity=0.162 Sum_probs=121.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEc-C--eEEEEEecCCCcccccccCcchhHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQ-G--RTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
..++|+++|.+|||||||+|+|++.... ...+..+++.... .+... + ..+.||||||+.+... .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~l~Dt~G~~~~~~----------~ 77 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPV--TFLDDQGNVIKFNVWDTAGQEKKAV----------L 77 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEE--EEEBTTSCEEEEEEEEECSGGGTSC----------C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEE--EEEeCCCcEEEEEEEecCCchhhch----------H
Confidence 4589999999999999999999965422 2334444433322 22222 2 5788999999754421 1
Q ss_pred HHHHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
...++..+|++|+|+|+++.. ....++|+++|+||+|+.+.... ..+....+...
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-----------~~~~~~~~~~~ 146 (218)
T 4djt_A 78 KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI-----------SKKLVMEVLKG 146 (218)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C-----------CHHHHHHHTTT
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc-----------CHHHHHHHHHH
Confidence 124567899999999998761 11236899999999999764221 11222233344
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCCCCcCcEEEEeecCCCCCE
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPT 537 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~ 537 (607)
.+++++++||++|.|++++|+.+.+.+.+...+.++..++.++.+++..+++|..+ .+++|++|+..+|||
T Consensus 147 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~q~~~~pp~ 217 (218)
T 4djt_A 147 KNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEVNYDYHSPEES--KYIDYMEQASKMAPE 217 (218)
T ss_dssp CCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCCCBCCCCCCCCCC--------------------
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHHHhcccccccccccCcCCCccccCccCchhh--hhHHHHHHHhccCCC
Confidence 57899999999999999999999999998888888888888887776666655432 369999999999996
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-23 Score=211.44 Aligned_cols=170 Identities=23% Similarity=0.359 Sum_probs=135.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC-CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG-DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...|+|+|.||||||||+|+|++.+.++++..++ +|++...+..... +.++.+|||||+............+...+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~--tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAG--TTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC--CCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCC--ceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 3589999999999999999999999888888887 9999988888888 999999999999753321334445667778
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHH-HHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-CCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEV-GKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML-GFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~-~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+..+..+ .+.+... +.|+++|+||+|+.................+ .+.+++++||++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~ 165 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALK 165 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTT
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 89999999999999999999888776 6777664 7899999999999833322222222333344 345789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|+++|++.|.+.+++
T Consensus 166 g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 166 GANLDELVKTILKYLPE 182 (308)
T ss_dssp TBSHHHHHHHHHHHSCB
T ss_pred CCCHHHHHHHHHHhCcc
Confidence 99999999999887653
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-23 Score=211.29 Aligned_cols=165 Identities=24% Similarity=0.295 Sum_probs=131.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
..|+|||+||||||||+|+|++.+.++++..++ +|++...+.....+.++.+|||||+... ...+...+...+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~--tTr~~i~~i~~~~~~~l~l~DTpG~~~~--~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ--TTRKRLRGILTEGRRQIVFVDTPGLHKP--MDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC--CCCSCEEEEEEETTEEEEEEECCCCCCC--CSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCC--ceeEEEEEEEEeCCcEEEEecCccccch--hhHHHHHHHHHHHHH
Confidence 479999999999999999999998887777777 8888888777778899999999999842 223333456677889
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+..+|++++|+|++++.+..+..+.+.+++..++.|+++|+||+|+...... .......+ .++.+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~--~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHEL--LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHT--STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-HHHHHHHh--cCcCcEEEEeCCCCCCH
Confidence 9999999999999999888887777777765457899999999999764220 11111121 34456799999999999
Q ss_pred HHHHHHhccchH
Q 007334 281 TELYEALRPSVE 292 (607)
Q Consensus 281 ~eL~~~i~~~l~ 292 (607)
++|++.|.+.++
T Consensus 161 ~~l~~~l~~~l~ 172 (301)
T 1wf3_A 161 AELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcc
Confidence 999999987664
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.2e-23 Score=190.31 Aligned_cols=159 Identities=35% Similarity=0.574 Sum_probs=120.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+++|.+|||||||+|+|++.....+...++ +|.+.....+...+..+.+|||||+..... ....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~ 76 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPG--VTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRA 76 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-------------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCC--ceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHH
Confidence 689999999999999999999987655566666 888888888888899999999999984321 112344566778
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+..+|++++|+|++++.+..+..+.++++.. +.|+++|+||+|+...... ...+...++.+++++||++|.|+
T Consensus 77 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 77 LEDAEVVLFAVDGRAELTQADYEVAEYLRRK--GKPVILVATKVDDPKHELY-----LGPLYGLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp TTTCSEEEEEEESSSCCCHHHHHHHHHHHHH--TCCEEEEEECCCSGGGGGG-----CGGGGGGSSCSCEECBTTTTBSH
T ss_pred HHhCCEEEEEEECCCcccHhHHHHHHHHHhc--CCCEEEEEECcccccchHh-----HHHHHhCCCCCeEEEecccCCCh
Confidence 8999999999999998888877788888775 7899999999999865221 11222566667899999999999
Q ss_pred HHHHHHhccch
Q 007334 281 TELYEALRPSV 291 (607)
Q Consensus 281 ~eL~~~i~~~l 291 (607)
+++++.|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999987654
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=198.89 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=129.4
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEee-eCCeeEEEecCCCCccccCchhHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAK-LGDLRFKVLDSAGLETEATSGSILDR 192 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~ 192 (607)
.+....++|+|+|.+|||||||+|+|++.. .+.+...++ +|++....... ..+..+.||||||+............
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 101 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPG--RTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH 101 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCC--SCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCC--cccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence 334456899999999999999999999986 456777777 78887666655 56789999999998754333333334
Q ss_pred HHHHHHHHhhc---cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHHHHHHhc---
Q 007334 193 TAGMTANVLAK---TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAAAESLML--- 264 (607)
Q Consensus 193 ~~~~~~~~~~~---ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~~~~~~~--- 264 (607)
+...+..++.. +|++++|+|++++.+..+..+.+++... ++|+++|+||+|+....... .......+...
T Consensus 102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 102 WEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT--GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 44555556655 7889999999999888888888888875 78999999999998643211 11111222221
Q ss_pred ---CCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 ---GFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 ---~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+++++||++|.|+++|++.|.+.++.
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 33368999999999999999999887754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=211.94 Aligned_cols=170 Identities=21% Similarity=0.378 Sum_probs=122.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCch-hHHHHH-HHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSG-SILDRT-AGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~-~~~~ 197 (607)
.++|+|||+||||||||+|+|++.....+++.++ +|++...+.+.++|..+.+|||||+....... .....+ ...+
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~g--tT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG--TTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC--------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCC--CcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence 5799999999999999999999998888899998 99999989999999999999999985322110 000000 1123
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHH----HHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAA----AESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~----~~~~~~~~~~~i~iS 273 (607)
..++..+|++++|+|++++.+..+..+...+... ++|+++|+||+|+...+.....+.. ..+...+..+++++|
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 335 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTS 335 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECB
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEE
Confidence 5678899999999999999888887777777765 7899999999999864332222211 122223444789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|+++|++.|.+.+..
T Consensus 336 A~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 336 ADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-23 Score=218.36 Aligned_cols=235 Identities=18% Similarity=0.162 Sum_probs=157.4
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHH-HHHHHHhcCC--
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAG-AAAESLMLGF-- 266 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~-~~~~~~~~~~-- 266 (607)
++.+....+...++++++|+|++++......++.++ ..++|+++|+||+|+.+..... ... ....+...|+
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~----l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~ 135 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRF----AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCP 135 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHH----CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHH----hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCc
Confidence 455555566688999999999998664332223333 3478999999999998653211 111 1222455666
Q ss_pred CCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhc
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.+++.+||++|.|+++|++.|.+... ..+|+++|.||||||||+|+|++
T Consensus 136 ~~v~~iSA~~g~gi~~L~~~I~~~~~-------------------------------~~~i~~vG~~nvGKStliN~L~~ 184 (369)
T 3ec1_A 136 VDVCLVSAAKGIGMAKVMEAINRYRE-------------------------------GGDVYVVGCTNVGKSTFINRIIE 184 (369)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHHT-------------------------------TSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc-------------------------------cCcEEEEcCCCCchHHHHHHHHh
Confidence 36799999999999999998865431 24799999999999999999998
Q ss_pred C-----CceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc-ccCcchhHHHHHHHHH---hhccEEEEEeccch
Q 007334 347 E-----DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK-EKGPASLSVMQSRKNL---MRAHVVALVLDAEE 417 (607)
Q Consensus 347 ~-----~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~-~~~~~~~~~~~~~~~i---~~ad~~llViD~~~ 417 (607)
. ....+++.||||++..... + +..+.++||||+..... ..... ......+ ...|.+++++|+..
T Consensus 185 ~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~----~~~l~~~~~~~~i~~~~~~l~~~~ 257 (369)
T 3ec1_A 185 EATGKGNVITTSYFPGTTLDMIEIP--L-ESGATLYDTPGIINHHQMAHFVD----ARDLKIITPKREIHPRVYQLNEGQ 257 (369)
T ss_dssp HHHHTTCCCEEEECTTSSCEEEEEE--C-STTCEEEECCSCCCCSSGGGGSC----TTTHHHHSCSSCCCCEEEEECTTE
T ss_pred hccCCccceeecCCCCeEEeeEEEE--e-CCCeEEEeCCCcCcHHHHHHHHh----HHHHHHHhcccccCceEEEEcCCc
Confidence 7 5678899999999876543 2 23489999999976521 11111 1122333 57899999999943
Q ss_pred h----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCH
Q 007334 418 V----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGR 480 (607)
Q Consensus 418 ~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv 480 (607)
. .....+.|+++++||+|..+........+.+.+. + +..+.+.++....++
T Consensus 258 ~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~--------~----g~~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 258 TLFFGGLARLDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQ--------L----GELLSPPSKRYAAEF 318 (369)
T ss_dssp EEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHH--------B----TTTBCSSCGGGTTTC
T ss_pred eEEECCEEEEEEccCCCceEEEEecCCcccccccHHHHHHHHHHh--------c----CCccCCCCchhhhhc
Confidence 2 1223467999999999988764443333322221 1 335566666655554
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-23 Score=192.53 Aligned_cols=148 Identities=26% Similarity=0.417 Sum_probs=114.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+++|++|||||||+|+|++.....+++++++|++.....+.+++..+.+|||||+.+.. ...+.+....+..++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS--DEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS--SHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch--hHHHHHHHHHHHHHH
Confidence 479999999999999999999987666788899999999988899999999999999986531 111222334455678
Q ss_pred hhccEEEEEeccchh----------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 404 MRAHVVALVLDAEEV----------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+.+|++++|+|+++. .... .++|+++|+||+|+.+.... ++...+.+++
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------------------~~~~~~~~~~ 143 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------------MSEVNGHALI 143 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------------EEEETTEEEE
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh------------------hhhccCCceE
Confidence 899999999999874 1111 36899999999998643110 0111356899
Q ss_pred EcccCCCCCHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++||++|.|++++|+.+.+.+
T Consensus 144 ~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 144 RLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp ECCTTTCTTHHHHHHHHHHHC
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999988764
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-24 Score=229.24 Aligned_cols=226 Identities=21% Similarity=0.239 Sum_probs=129.6
Q ss_pred chhhhhhhhhccccccccccc-ccccc--------cCccCCCCCCCCCCccccccccccccCCcccccc-----cccCCC
Q 007334 56 LYQVGSSLKCNLLPEVPRGFC-GVVQN--------EALEDTHVEPEPDGVVEDHKVKPLYEKPVDFTKI-----DINLLP 121 (607)
Q Consensus 56 ~~qv~la~l~~~~~~~~~~~~-~~~~~--------~g~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~ 121 (607)
..+.+++++...+++....|. .+... .-+.+...+..++.+ ..++..+++++..+... ..+...
T Consensus 157 ~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l--~~~i~~l~~~l~~~~~~~~~~~~~r~~~ 234 (476)
T 3gee_A 157 AYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDEL--TMQIETLRSEVNRLIDSYQHGRIVSEGV 234 (476)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHH--HHHHHHHHHHHHHHHHHHHhhHhhcCCC
Confidence 378888888877775433332 22222 112222222333344 44555555555443321 112246
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|+|+||||||||+|+|++.+.+++++.++ +|++.....+.+++..+.+|||||+.... +.........+..++
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~g--tT~d~~~~~i~~~g~~l~liDT~G~~~~~--~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAIVSHMPG--TTRDYIEECFIHDKTMFRLTDTAGLREAG--EEIEHEGIRRSRMKM 310 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--------------------CEEEEETTEEEEEEC----------------------CCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--ceEEEEEEEEEECCeEEEEEECCCCCcch--hHHHHHHHHHHHhhc
Confidence 79999999999999999999988788888888 99999999999999999999999997421 111111234556788
Q ss_pred hccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 202 AKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
..+|++++|+|++++.+..+. ....++.... ++|+++|+||+|+....... ...+...++.+++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl~~~~~~~----~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDRAANADAL----IRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTSCTTTHHH----HHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCCCCccchh----HHHHHhcCCCceEEEEECCCCCH
Confidence 999999999999998887542 2344555543 78999999999998754321 11222223347899999999999
Q ss_pred HHHHHHhccchH
Q 007334 281 TELYEALRPSVE 292 (607)
Q Consensus 281 ~eL~~~i~~~l~ 292 (607)
++|+++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-23 Score=217.45 Aligned_cols=209 Identities=19% Similarity=0.181 Sum_probs=139.6
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHH----HHHHHhcCCC
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA----AAESLMLGFG 267 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~----~~~~~~~~~~ 267 (607)
++.+....+.+.+|++++|+|++++. ..+...+.+...++|+++|+||+|+.+.... .+.. ...+...|+.
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~-~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVK-HDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSC-HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccC-HHHHHHHHHHHHHHcCCC
Confidence 45555666777888999999998732 2233334444457899999999999864321 1111 1224456663
Q ss_pred --CcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhh
Q 007334 268 --DPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 268 --~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~ 345 (607)
+++.+||++|.|+++|++.|.+... ..+|+++|.+|||||||+|+|+
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~~~~~-------------------------------~~~i~~vG~~nvGKStliN~L~ 181 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIEYYRG-------------------------------GKDVYVVGCTNVGKSTFINRMI 181 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHT-------------------------------TSCEEEEEBTTSSHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhhhhcc-------------------------------cceEEEecCCCCChhHHHHHHH
Confidence 6799999999999999998865321 2479999999999999999999
Q ss_pred cCC------ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH---HhhccEEEEEeccc
Q 007334 346 QED------RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN---LMRAHVVALVLDAE 416 (607)
Q Consensus 346 ~~~------~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~---i~~ad~~llViD~~ 416 (607)
+.. ...+++.||||++.....+ . ..+.++||||+.+.... .+.+. ...... ....+.+++++|+.
T Consensus 182 ~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~--~~~l~-~~~l~~~~~~~~i~~~~~~l~~~ 255 (368)
T 3h2y_A 182 KEFSDETENVITTSHFPGTTLDLIDIPL--D-EESSLYDTPGIINHHQM--AHYVG-KQSLKLITPTKEIKPMVFQLNEE 255 (368)
T ss_dssp HHHTTSCSSCCEEECCC----CEEEEES--S-SSCEEEECCCBCCTTSG--GGGSC-HHHHHHHSCSSCCCCEEEEECTT
T ss_pred hhhccccccceecCCCCCeecceEEEEe--c-CCeEEEeCCCcCcHHHH--HHHhh-HHHHHHhccccccCceEEEEcCC
Confidence 852 4568899999998765432 2 23889999999765211 11111 111222 24678899999984
Q ss_pred hh----------hHHhcCCcEEEEEeCccCCCCcCc
Q 007334 417 EV----------RAVEEGRGLVVIVNKMDLLSGRQN 442 (607)
Q Consensus 417 ~~----------~~~~~~~p~ivv~NK~Dl~~~~~~ 442 (607)
.. .....+.|+++++||+|.++....
T Consensus 256 ~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 256 QTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp EEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEH
T ss_pred CEEEEcceEEEEEecCCCceEEEEecCccccccccH
Confidence 32 122346899999999999876443
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-23 Score=228.35 Aligned_cols=220 Identities=21% Similarity=0.288 Sum_probs=155.4
Q ss_pred chhhhhhhhhccccccccccc-ccccc--------cCccCCCCC-CCCCCccccccccccccCCcccccc-----cccCC
Q 007334 56 LYQVGSSLKCNLLPEVPRGFC-GVVQN--------EALEDTHVE-PEPDGVVEDHKVKPLYEKPVDFTKI-----DINLL 120 (607)
Q Consensus 56 ~~qv~la~l~~~~~~~~~~~~-~~~~~--------~g~g~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~ 120 (607)
.+|++++++.+.+++..+.|. .+.+. ..+++ ++ ...+ + ..++..++.++..+... ..+..
T Consensus 169 ~~~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~ee--i~~~~~~-i--~~~~~~l~~eL~~l~~~~~~~~~~r~~ 243 (482)
T 1xzp_A 169 SLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDE--IETNTGE-V--VTRLERIKEKLTEELKKADAGILLNRG 243 (482)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTT--CCCCHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCcc--ccchHHH-H--HHHHHHHHHHHHHHHHhhhhhhhccCC
Confidence 378999999998887765553 22111 22332 22 2222 4 45555565555543211 11123
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCc-cccCchhHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE-TEATSGSILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~ 199 (607)
++|+|+|+||||||||+|+|++.+.+++.+.++ +|+|.....+.+++..+.+|||||+. ......+. .....+..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~g--TT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~--~gi~~~~~ 319 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG--TTRDVISEEIVIRGILFRIVDTAGVRSETNDLVER--LGIERTLQ 319 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC--CSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCC--CCHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCC--eeeeeEEEEEecCCeEEEEEECCCccccchhhHHH--HHHHHHHH
Confidence 689999999999999999999988888888888 99999999999999999999999997 33211000 11244567
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
++..+|++|+|+|++++.+.++.++.+.+ .++|+++|+||+|+... ...+.. ......+. +++++||++|.|
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~--~~~~~~-~~~~~~~~-~~i~iSAktg~G 391 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEK--INEEEI-KNKLGTDR-HMVKISALKGEG 391 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCC--CCHHHH-HHHHTCST-TEEEEEGGGTCC
T ss_pred HhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccc--cCHHHH-HHHhcCCC-cEEEEECCCCCC
Confidence 88999999999999999888776665554 36899999999999753 222222 22222222 689999999999
Q ss_pred hHHHHHHhccchH
Q 007334 280 MTELYEALRPSVE 292 (607)
Q Consensus 280 i~eL~~~i~~~l~ 292 (607)
+++|++.|.+.+.
T Consensus 392 i~eL~~~l~~~~~ 404 (482)
T 1xzp_A 392 LEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=186.88 Aligned_cols=170 Identities=24% Similarity=0.301 Sum_probs=123.9
Q ss_pred cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 116 DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 116 ~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
+....++|+++|.+|||||||+|+|++.....+...++ +|++..... .+.++.+|||||+............+..
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPG--KTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCC--CccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHH
Confidence 33456899999999999999999999987665666666 666655433 3457999999997643322222223444
Q ss_pred HHHHHhhcc---CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHHHHHHhcCCCCcE
Q 007334 196 MTANVLAKT---QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAAAESLMLGFGDPI 270 (607)
Q Consensus 196 ~~~~~~~~a---d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~~~~~~~~~~~~i 270 (607)
.+..++..+ |++++|+|++.+.+..+..+.+|+... +.|+++|+||+|+....... .+.....+...+..+++
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 445555555 999999999998888888888899887 78999999999998543211 12222233333444789
Q ss_pred EeecCCCCChHHHHHHhccchH
Q 007334 271 AISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
++||++|.|+++++++|.+.++
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999987664
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=188.20 Aligned_cols=170 Identities=23% Similarity=0.287 Sum_probs=115.4
Q ss_pred ccccCCCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHH
Q 007334 115 IDINLLPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRT 193 (607)
Q Consensus 115 ~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ 193 (607)
.+....++|+++|.+|||||||+|+|++.. ...+...++ +|.+...... +.++.+|||||+............+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPG--KTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAW 92 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCC--ceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHH
Confidence 344457899999999999999999999876 344555555 6666554432 3479999999976443322222344
Q ss_pred HHHHHHHhhcc---CEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHHh-cCCCC
Q 007334 194 AGMTANVLAKT---QFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLM-LGFGD 268 (607)
Q Consensus 194 ~~~~~~~~~~a---d~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~~-~~~~~ 268 (607)
......++..+ |++++|+|++++.+..+.++.+|+... +.|+++|+||+|+...+.... ......... ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 93 GRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY--GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 45556666666 999999999999999888788888775 789999999999987543211 111111111 12236
Q ss_pred cEEeecCCCCChHHHHHHhccch
Q 007334 269 PIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
++++||++|.|++++++.|.+.+
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEccCCCCHHHHHHHHHHHh
Confidence 79999999999999999988655
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=201.17 Aligned_cols=153 Identities=23% Similarity=0.306 Sum_probs=115.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH-
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL- 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i- 403 (607)
.+|+++|.||||||||+|+|+|.. ..++++||+|++.....+.+++..+.||||||+.+..............+..++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 379999999999999999999874 788999999999999999999999999999998766321100011112233445
Q ss_pred -hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 404 -MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 404 -~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
..+|++|+|+|+++. ...+.++|+++|+||+|+.+........+.+. +.+ ++|++++||
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~--------~~l----g~~vi~~SA 148 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLE--------SLL----GCSVIPIQA 148 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHH--------HHH----CSCEEECBG
T ss_pred hCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHH--------HHc----CCCEEEEEC
Confidence 789999999999986 23345899999999999875433222222221 111 579999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDT 490 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~ 490 (607)
++|.|++++++.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 149 HKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGTBSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999875
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=188.24 Aligned_cols=160 Identities=26% Similarity=0.328 Sum_probs=120.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+|+|.+|||||||+|+|++.....+...++ +|++.....+.+++..+.+|||||+..... .........+..+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGMPLHIIDTAGLREASD--EVERIGIERAWQE 80 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTT--CCCSCEEEEEEETTEEEEEEECCCCSCCSS--HHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCC--ceeceeeEEEEECCeEEEEEECCCcccchh--HHHHHHHHHHHHH
Confidence 589999999999999999999987666666777 888888888888898999999999974321 1111122334567
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
+..+|++++|+|++++.+..+..+...+.+. ..++|+++|+||+|+....... ....+. +++++||++|.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-------~~~~~~-~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-------SEVNGH-ALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-------EEETTE-EEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhh-------hhccCC-ceEEEeCCCCCC
Confidence 8999999999999998876665555555543 2368999999999986432110 001122 679999999999
Q ss_pred hHHHHHHhccchH
Q 007334 280 MTELYEALRPSVE 292 (607)
Q Consensus 280 i~eL~~~i~~~l~ 292 (607)
++++++.|.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-22 Score=188.35 Aligned_cols=161 Identities=19% Similarity=0.216 Sum_probs=121.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++.... ....+. ++.+.....+.+.+ ..+.+|||||..... ..+
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 75 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITT--IGVDFKIRTVEINGEKVKLQIWDTAGQERFR----------TIT 75 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC----CCTTT--BSEEEEEEEEEETTEEEEEEEEEETTGGGCS----------SCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCC--ceeEEEEEEEEECCEEEEEEEEcCCCchhhh----------hhH
Confidence 579999999999999999999987654 223343 67777777777777 679999999987322 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+...+..............+. +++++||++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 154 (181)
T 3tw8_B 76 STYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI-QLFETSAKE 154 (181)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC-eEEEEECCC
Confidence 4567899999999999986555442 23333444456789999999999987665555555556666676 889999999
Q ss_pred CCChHHHHHHhccchHHH
Q 007334 277 GLGMTELYEALRPSVEDY 294 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~~ 294 (607)
|.|++++++.|.+.+...
T Consensus 155 ~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 155 NVNVEEMFNCITELVLRA 172 (181)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999877654
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=203.50 Aligned_cols=156 Identities=25% Similarity=0.290 Sum_probs=117.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchh--HHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASL--SVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~--~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|+|.. ..+++.+|+|++.....+.+.+..+.||||||+.+.......... .+.+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4799999999999999999999886 789999999999999999999999999999998776321111111 1122222
Q ss_pred HHhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 402 NLMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
....+|++|+|+|+++. ...+.++|+|+|+||+|+.+........+.+. .. .++|++++|
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~----~~--------lg~~~i~~S 149 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALS----AR--------LGCPVIPLV 149 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHH----HH--------HTSCEEECC
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHH----Hh--------cCCCEEEEE
Confidence 34689999999999986 33456899999999999875433222222221 11 157999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~ 492 (607)
|++|.|++++++.+.+.+.
T Consensus 150 A~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCC
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999877543
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-22 Score=193.86 Aligned_cols=159 Identities=18% Similarity=0.258 Sum_probs=117.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+|||.+|||||||+++++...+.... .|. +..+.....+...+ ..+.||||+|++ ++...+.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~-~~T--ig~d~~~k~~~~~~~~v~l~iwDtaGqe----------~~~~l~~ 80 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTY-QAT--IGIDFLSKTMYLEDRTIRLQLWDTAGLE----------RFRSLIP 80 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-------------CEEEEEECSSCEEEEEEECCSCTT----------TCGGGHH
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCc-CCc--cceEEEEEEEEecceEEEEEEEECCCch----------hhhhHHH
Confidence 68999999999999999999987653211 121 33444444444444 578999999998 4445567
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+++.+|++++|+|+++..+..... +...+... .++.|+++|+||+|+...+.+..++....+...+. .++++||++
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~SAkt 159 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV-MFIETSAKA 159 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCC-eeEEEeCCC
Confidence 7899999999999999877766522 33333332 56789999999999998777777777777778887 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.||+++|+.|.+.+..
T Consensus 160 g~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TBSHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999876643
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=201.60 Aligned_cols=160 Identities=29% Similarity=0.376 Sum_probs=122.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc-CeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ-GRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+-.|+++|+||||||||+|+|+|.....+++.+++|++.....+..+ +.++.||||||+.+..............+..+
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~ 89 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQS 89 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHH
Confidence 45799999999999999999999988889999999999999988888 99999999999876531112223334456678
Q ss_pred HhhccEEEEEeccchh------h-----HHhcCCcEEEEEeCccCC-CCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 403 LMRAHVVALVLDAEEV------R-----AVEEGRGLVVIVNKMDLL-SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~------~-----~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+..+|++++|+|++++ . ....++|+++|+||+|+. +........+ .+.+.+. ...+++
T Consensus 90 l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~--------~l~~~~~--~~~~i~ 159 (308)
T 3iev_A 90 LEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLID--------EIHKKHP--ELTEIV 159 (308)
T ss_dssp HHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHH--------HHHHHCT--TCCCEE
T ss_pred hhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHH--------HHHHhcc--CCCeEE
Confidence 8899999999999875 1 112479999999999998 3322222222 2222221 246899
Q ss_pred EcccCCCCCHHHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++||++|.|++++++.+.+.+.+
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCB
T ss_pred EEeCCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999987653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-22 Score=183.42 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=101.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++.........++ +|.+... .+......+.+|||||+. ++......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~i~D~~g~~----------~~~~~~~~ 68 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG--HTYDRSI-VVDGEEASLMVYDIWEQD----------GGRWLPGH 68 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEEE-EETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccc--cceEEEE-EECCEEEEEEEEECCCCc----------cchhhhhh
Confidence 4689999999999999999999877655555555 5554222 222234578999999987 44455567
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........+. +++++||++
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETSAAL 147 (166)
T ss_dssp ----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC-EEEECBGGG
T ss_pred hhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC-cEEEeccCC
Confidence 78999999999999986554442 233333332 24789999999999987666555555555666666 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.|++++++.|.+.+..
T Consensus 148 ~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 148 HHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999877643
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-22 Score=185.21 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=107.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++.........++ ++.. ...+.+++ ..+.+|||||+... ++....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~ 71 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG--EDVY--ERTLTVDGEDTTLVVVDTWEAEKL--------DKSWSQ 71 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSS--SSEE--EEEEEETTEEEEEEEECCC---------------CHHH
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccc--ccee--EEEEEECCEEEEEEEEecCCCCcc--------chhhhH
Confidence 3689999999999999999999987655544444 3332 33344444 47899999998721 122334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....++........+. +++++||
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 150 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC-KFIETSA 150 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS-EEEECBT
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC-eEEEEec
Confidence 5567889999999999986554442 233334432 23789999999999987655544444444555665 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+..
T Consensus 151 ~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-23 Score=214.69 Aligned_cols=169 Identities=22% Similarity=0.297 Sum_probs=121.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..++|+++|++|||||||+|+|++... .+.+.++ +|.+.....+...+..+.+|||||+...........+ .....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~~~~ 241 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPF--TTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIE-KQAIL 241 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTT--CSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCC--eeeceeEEEEEecCceEEEEeCCCccccchhhhhHHH-HHHHH
Confidence 467999999999999999999999763 4556666 8888888887778889999999999754332111001 12223
Q ss_pred HHhhccCEEEEEEecCCCC--CHhH-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGL--HPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~--~~~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.....+|++++|+|++++. +..+ ..+...+.....++|+++|+||+|+..... .+.....+...+. +++++||+
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~-~~~~iSA~ 318 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN--IKRLEKFVKEKGL-NPIKISAL 318 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH--HHHHHHHHHHTTC-CCEECBTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH--HHHHHHHHHhcCC-CeEEEeCC
Confidence 3445799999999998765 4443 334555555444789999999999976422 1222233334454 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|+|+++|+++|.+.+...
T Consensus 319 ~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 319 KGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 9999999999999877653
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-22 Score=197.13 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=120.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+++|.||||||||+|+|++.+ ..+++.|+ +|.+...+.+.+.+..+.+|||||+....+...........+..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg--~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPG--VTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTT--SSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCC--ceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 689999999999999999999986 45778888 999999999999999999999999985543210000111233445
Q ss_pred h--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 201 L--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 201 ~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
+ ..+|++++|+|+++. .....+..++.+. +.|+++|+||+|+......... .......+|. +++++||++|.
T Consensus 79 ~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~--~~pvilv~NK~Dl~~~~~~~~~-~~~l~~~lg~-~vi~~SA~~g~ 152 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHL--ERHLYLTSQLFEL--GKPVVVALNMMDIAEHRGISID-TEKLESLLGC-SVIPIQAHKNI 152 (256)
T ss_dssp HHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTS--CSCEEEEEECHHHHHHTTCEEC-HHHHHHHHCS-CEEECBGGGTB
T ss_pred HhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHc--CCCEEEEEEChhcCCcCCcHHH-HHHHHHHcCC-CEEEEECCCCC
Confidence 5 889999999999872 3334466667665 7899999999999865432211 1223344566 88999999999
Q ss_pred ChHHHHHHhccc
Q 007334 279 GMTELYEALRPS 290 (607)
Q Consensus 279 gi~eL~~~i~~~ 290 (607)
|+++|++.|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-21 Score=187.91 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=115.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|+|.+|||||||+|+|++.... +...++ +|++.........+..+.+|||||+.......... ........
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~--~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~-~~~~~~~~ 104 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSF--TTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNT-IEMTTITA 104 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-------CEEEEEEEETTEEEEEEECTTTTTSCGGGCCH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCC--cceeeeeeeeecCCCeEEEEECCCCcCcccchhhh-HHHHHHHH
Confidence 579999999999999999999998765 455555 88888888888888999999999996322111100 01122234
Q ss_pred HhhccCEEEEEEecCCCCCHhH---HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHH---HHHHHHHhcC-CCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD---LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA---GAAAESLMLG-FGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~---~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~---~~~~~~~~~~-~~~~i~i 272 (607)
++..+|++|+|+|++++.+... ..+...+....++.|+++|+||+|+...+..... .........+ ..+++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF 184 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 5788899999999998766442 2334444443347899999999999875543322 1222223333 1278999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.|.+.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 185 STLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999987754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-22 Score=189.69 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=111.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..... ...+. .+.+.....+.+. +..+.+|||||+.. +...+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 81 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDP-ELAAT--IGVDFKVKTISVDGNKAKLAIWDTAGQER----------FRTLT 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCC--CSEEEEEEEEEETTEEEEEEEEEECSSGG----------GCCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCc--cceEEEEEEEEECCeEEEEEEEeCCCchh----------hhhhh
Confidence 3689999999999999999999876421 11222 3334433444443 46799999999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..++..+|++|+|+|++++.+..+ +..|+... ..+.|+++|+||+|+... ..........+...+. .++++
T Consensus 82 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~ 157 (195)
T 1x3s_A 82 PSYYRGAQGVILVYDVTRRDTFVK--LDNWLNELETYCTRNDIVNMLVGNKIDKENR-EVDRNEGLKFARKHSM-LFIEA 157 (195)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHT--HHHHHHHHTTCCSCSCCEEEEEEECTTSSSC-CSCHHHHHHHHHHTTC-EEEEC
T ss_pred HHHhccCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCcEEEEEECCcCccc-ccCHHHHHHHHHHcCC-EEEEe
Confidence 567899999999999988655443 23444433 146899999999999543 3334444555556666 78999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.|.+.+.+
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=183.12 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=114.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.........+. ++.+.....+...+ ..+.+|||||+. ++...+
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~ 77 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIST--VGIDFRNKVLDVDGVKVKLQMWDTAGQE----------RFRSVT 77 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCC--CSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCc--eeeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 4689999999999999999999877532222333 55555555555555 479999999987 444556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 156 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFMETSAK 156 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEeCC
Confidence 6788999999999999986554442 233333333 24789999999999987655444444455555676 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 157 ~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877653
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-22 Score=189.52 Aligned_cols=159 Identities=16% Similarity=0.096 Sum_probs=114.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++... ...... ++.+.....+..++ ..+.+|||||+.... ...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 71 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDP--TIENTFTKLITVNGQEYHLQLVDTAGQDEYS----------IFP 71 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCT--TCCEEEEEEEEETTEEEEEEEEECCCCCTTC----------CCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCC--CccccEEEEEEECCEEEEEEEEeCCCchhhh----------HHH
Confidence 46899999999999999999997654 233333 44444455555666 567999999988332 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+..... +...+.+. ..+.|+++|+||+|+...+....+.....+...+. +++++||
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 150 (181)
T 3t5g_A 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLESSA 150 (181)
T ss_dssp GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEEEEec
Confidence 34678899999999999765554421 22222222 23789999999999987666666666666677777 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+..
T Consensus 151 ~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp TSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999877653
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=197.86 Aligned_cols=175 Identities=21% Similarity=0.274 Sum_probs=118.2
Q ss_pred ecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH
Q 007334 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 175 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
-+.||+.. ++.+++...+..+|+|++|+|++++.+..+..+.+++ .++|.++|+||+|+.+.. ..
T Consensus 4 ~w~PGhm~---------ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~--~~ 68 (282)
T 1puj_A 4 QWFPGHMA---------KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAA--VT 68 (282)
T ss_dssp -----CTT---------HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHH--HH
T ss_pred cCCchHHH---------HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHH--HH
Confidence 35677762 5678889999999999999999999888765666665 378999999999998631 11
Q ss_pred HHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCC
Q 007334 255 AGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPN 334 (607)
Q Consensus 255 ~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~n 334 (607)
+.....+...++ +++++||++|.|+++|++.+.+.+++........ .....+++|+++|.||
T Consensus 69 ~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~-----------------~~~~~~~~v~~vG~~n 130 (282)
T 1puj_A 69 QQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAK-----------------GVKPRAIRALIIGIPN 130 (282)
T ss_dssp HHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHT-----------------TCCCCCEEEEEEESTT
T ss_pred HHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhc-----------------CCCCCCceEEEEecCC
Confidence 222233334566 7899999999999999999887776432110000 0112358999999999
Q ss_pred CchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 335 VGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 335 vGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
||||||+|+|++...+.+++.||+|++.... .. +..+.++||||+...
T Consensus 131 vGKSsliN~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 131 VGKSTLINRLAKKNIAKTGDRPGITTSQQWV--KV-GKELELLDTPGILWP 178 (282)
T ss_dssp SSHHHHHHHHHTSCCC------------CCE--EE-TTTEEEEECCCCCCS
T ss_pred CchHHHHHHHhcCceeecCCCCCeeeeeEEE--Ee-CCCEEEEECcCcCCC
Confidence 9999999999998888999999999987532 22 557899999999765
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=196.41 Aligned_cols=152 Identities=28% Similarity=0.370 Sum_probs=115.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.||||||||+|+|+|.. ..++++||+|.+.....+.+++..+.||||||+....... .+. ..+..++
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~e---~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS-IDE---KIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS-HHH---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC-HHH---HHHHHHH
Confidence 4799999999999999999999875 5688999999999998898889999999999987653211 111 1122333
Q ss_pred --hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 --MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 --~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
..+|++++|+|+++. ...+.++|+++|+||+|+.+........+.+ .+. .++|++++|
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l--------~~~----lg~~vi~~S 147 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYEL--------QKH----LGIPVVFTS 147 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHH--------HHH----HCSCEEECC
T ss_pred hhcCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHH--------HHH----cCCCEEEEE
Confidence 479999999999875 3344689999999999986533221111222 111 157999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~ 492 (607)
|++|.|++++|+.+.+...
T Consensus 148 A~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 148 SVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred eeCCcCHHHHHHHHHHHhh
Confidence 9999999999999988764
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=180.22 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=108.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHH-H
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAG-M 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~-~ 196 (607)
..+|+++|.+|||||||+|+|++.........+ .+.+.....+..++ ..+.+|||||+.. +.. .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 68 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME---NSEDTYERRIMVDKEEVTLIVYDIWEQGD----------AGGWL 68 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------------CEEEEEEEETTEEEEEEEECCCCC-----------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCC---CcCCeeeEEEEECCeEEEEEEEECCCccc----------cchhh
Confidence 368999999999999999999976654333322 45555555555555 5688999999972 222 3
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
...++..+|++++|+|++++.+.... .+...+.... .+.|+++|+||+|+...+....+.........+. +++++|
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 147 (169)
T 3q85_A 69 QDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETS 147 (169)
T ss_dssp -CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECB
T ss_pred hhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEec
Confidence 34467789999999999986544442 1222222222 3789999999999987666666666666667777 889999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.|.+.+.
T Consensus 148 a~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 148 AALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=185.39 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=114.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 92 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEAC-KST--VGVDFKIKTVELRGKKIRLQIWDTAGQE----------RFNSIT 92 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC---------CC--TTEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCC-CCc--cceeEEEEEEEECCeEEEEEEEeCCCcH----------HHHHHH
Confidence 468999999999999999999987653222 222 44555555666655 579999999987 344556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.............++++||+
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence 7788999999999999987665552 233444443 34789999999999987655444444444444322378999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999876643
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=182.39 Aligned_cols=150 Identities=28% Similarity=0.417 Sum_probs=104.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH-
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL- 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i- 403 (607)
++|+++|++|||||||+|+|++.. ..++++||+|++.....+.+++..+.+|||||+.+..... . .. .....++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-~-~~--~~~~~~~~ 78 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-I-DE--IIARDYII 78 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS-H-HH--HHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc-h-hH--HHHHHHHh
Confidence 689999999999999999999763 4567888999988888888889999999999987653111 0 00 1122333
Q ss_pred -hhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 404 -MRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 404 -~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
..+|++++|+|+++. .....++|+++|+||+|+..........+. +.+. .+++++++||
T Consensus 79 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~--------~~~~----~~~~~~~~SA 146 (165)
T 2wji_A 79 NEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDK--------LEKI----LGVKVVPLSA 146 (165)
T ss_dssp HHCCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHH--------HHHH----HTSCEEECBG
T ss_pred cCCCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHH--------HHHH----hCCCEEEEEc
Confidence 379999999999875 122358999999999998643211111111 1111 1468999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~ 491 (607)
++|.|++++|+.+.+.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999987643
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=185.42 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=116.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+.. ....+++.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 95 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSE---RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE----------RFRTIT 95 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------CEEEEEEEETTEEEEEEEECCTTCG----------GGHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCC---CCCCCcceEEEEEEEEECCEEEEEEEEECCCcH----------hHHHHH
Confidence 4689999999999999999999876432 1221244555556666666 589999999987 344566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....++....+...++..++++||+
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 96 QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp HHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 7789999999999999876554442 233333333 35789999999999987555555555555666676578999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 176 DSSNVEEAFLRVATELIM 193 (201)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887754
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=199.21 Aligned_cols=152 Identities=25% Similarity=0.295 Sum_probs=117.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.+|+++|+||||||||+|+|++....++++.|+||++.....+..++.++.||||||+.+... .........+..+++
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~--~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh--HHHHHHHHHHHHHHh
Confidence 579999999999999999999988778899999999988888888899999999999875421 122233445667889
Q ss_pred hccEEEEEeccchh---------hHH-hc--CCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 405 RAHVVALVLDAEEV---------RAV-EE--GRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 405 ~ad~~llViD~~~~---------~~~-~~--~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
.+|++++|+|++++ ... .. ++|+++|+||+|+.+... ... ..+.+. ....+++++
T Consensus 86 ~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~--------~~~~~~---~~~~~~~~i 152 (301)
T 1wf3_A 86 DVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE--EAM--------KAYHEL---LPEAEPRML 152 (301)
T ss_dssp SCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH--HHH--------HHHHHT---STTSEEEEC
T ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH--HHH--------HHHHHh---cCcCcEEEE
Confidence 99999999999864 112 22 799999999999976421 011 111111 234579999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 007334 473 SALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~ 491 (607)
||++|.|++++++.+.+.+
T Consensus 153 SA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 153 SALDERQVAELKADLLALM 171 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTC
T ss_pred eCCCCCCHHHHHHHHHHhc
Confidence 9999999999999998754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=210.80 Aligned_cols=171 Identities=19% Similarity=0.313 Sum_probs=123.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH-HHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA-GMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~-~~~ 197 (607)
..++|+++|+||||||||+|+|++.....+++.++ +|++.....+.+++..+.||||||+............+. ..+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~g--tT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG--TTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-----------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCC--ceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 35799999999999999999999988877888888 999998888888999999999999964332111111222 224
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHH----HhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES----LMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~----~~~~~~~~i~iS 273 (607)
..+++.||++++|+|++++.+.++..+...+.+. ++|+++|+||+|+...+.....+..... ......+++++|
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S 329 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS 329 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc--CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence 4688999999999999999999988777777665 7899999999999875443222222111 122334789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|++++++.+.+.+..
T Consensus 330 A~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 330 ALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TTTCTTGGGHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHH
Confidence 99999999999999887654
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=183.74 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=121.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++..... ...+. ++.+.....+...+ ..+.+|||||+. ++...+
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 82 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYIST--IGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTIT 82 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCC--SSEEEEEEEEEETTEEEEEEEEEECCSG----------GGCTTH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCc--ccceEEEEEEEECCEEEEEEEEECCCcH----------hhhhhH
Confidence 4689999999999999999999876432 22333 66666666777766 579999999987 233345
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 83 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (196)
T 3tkl_A 83 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAK 161 (196)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEEECTT
T ss_pred HHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-cEEEEeCC
Confidence 5678999999999999986554442 233333333 34789999999999987766555555556666776 89999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 162 ~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999877653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=184.47 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=106.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.........++++.+.....+..++. .+.+|||||..+.. ....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~ 78 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR----------SVTH 78 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH----------HHHH
Confidence 35899999999999999999999876544455666777766666677775 67899999965432 1123
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++++|+|+++.. .. ..++|+++|+||+|+.+..... +.... +.+. .
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~~----~ 146 (180)
T 2g6b_A 79 AYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEK--------LAKE----Y 146 (180)
T ss_dssp CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHH--------HHHH----H
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHH--------HHHH----c
Confidence 4667899999999998751 11 1578999999999998643221 11111 1111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHHHhcC
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKWCLR 497 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~ 497 (607)
+++++++||++|.|++++|+.+.+.+.+...+
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~ 178 (180)
T 2g6b_A 147 GLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178 (180)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHC----
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 56899999999999999999998877654443
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=177.66 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=112.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++... ...... ++.+.....+...+ ..+.+|||||+. ++...+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~ 70 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP--TKADSYRKKVVLDGEEVQIDILDTAGQE----------DYAAIRD 70 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC--CSCCCT--TCCEEEEEEEEETTEEEEEEEEECCC-------------CHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc--CCCCCC--CcceEEEEEEEECCEEEEEEEEECCCcc----------hhHHHHH
Confidence 5899999999999999999998764 222232 34444444445555 478999999987 3445566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....++....+...+. +++++||+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 149 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVETSAK 149 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECCTT
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCCC
Confidence 788999999999999976554432 222333332 23789999999999987655555555555556666 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|+++++++|.+.+.
T Consensus 150 ~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 150 TRANVDKVFFDLMREIR 166 (168)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=208.68 Aligned_cols=153 Identities=32% Similarity=0.462 Sum_probs=122.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCc-ccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL-QREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~~ 402 (607)
+++|+++|.||||||||+|+|++.+..++++++|||+|.....+.+++..+.||||||+. +.. ...+.+....+..+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~--~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN--DLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCC--TTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccch--hhHHHHHHHHHHHH
Confidence 579999999999999999999998888899999999999999999999999999999987 442 22344555667788
Q ss_pred HhhccEEEEEeccchh------h--HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 403 LMRAHVVALVLDAEEV------R--AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 403 i~~ad~~llViD~~~~------~--~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
+..||++|+|+|++++ . ....++|+++|+||+|+.+.... +.+ .+.+. .+.+++++||
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~----~~~--------~~~~~--~~~~~i~iSA 386 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINE----EEI--------KNKLG--TDRHMVKISA 386 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCH----HHH--------HHHHT--CSTTEEEEEG
T ss_pred hhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCH----HHH--------HHHhc--CCCcEEEEEC
Confidence 9999999999999765 1 11248899999999999754211 111 11111 2468999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~ 492 (607)
++|.|++++++.|.+.+.
T Consensus 387 ktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 387 LKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GGTCCHHHHHHHHHHHTH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988643
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=185.59 Aligned_cols=179 Identities=20% Similarity=0.197 Sum_probs=116.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.. ..+.+.+++|.+.....+.+++..+.||||||+.+....+. ..........+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~~~~~~~~~ 105 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR-NTIEMTTITAL 105 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGC-CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchh-hhHHHHHHHHh
Confidence 35899999999999999999999875 44778899999988888888889999999999865421111 01101111234
Q ss_pred HhhccEEEEEeccchh------------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV------------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~------------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++|+|+|+++. .... .++|+++|+||+|+.+............ ..+..... ..+
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~--~~~ 179 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLI----KQILDNVK--NPI 179 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHH----HHHHHHCC--SCE
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHH----HHHHHhcC--CCc
Confidence 5678999999999864 1111 2799999999999986543322111111 11111110 126
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQKW--CLRLPTSRLNRWLRKV 510 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~~--~~~~~~~~l~~~l~~~ 510 (607)
+++++||++|.|++++|+.|.+.+.+. ..++++.+ +.|+..+
T Consensus 180 ~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~~~~~~-~~~~~~~ 223 (228)
T 2qu8_A 180 KFSSFSTLTGVGVEQAKITACELLKNDQAESILLDQE-QLLNTKL 223 (228)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC
T ss_pred eEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHhhhh-hhhcccc
Confidence 899999999999999999999877543 34455555 6666543
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=209.89 Aligned_cols=171 Identities=19% Similarity=0.303 Sum_probs=129.4
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH-HHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA-GMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~-~~~ 197 (607)
..++|+++|.+|||||||+|+|++.....+++.++ +|++.....+...+..+.||||||+...........++. ..+
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~g--tt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG--TTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC--------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCC--eEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 45799999999999999999999987777888888 999998888888999999999999764321111111232 234
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh----cCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM----LGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~----~~~~~~i~iS 273 (607)
..+++.||++|+|+|++++.+..+..+..++.+. ++|+++|+||+|+...+....++....+.. .+..+++++|
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 349 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS 349 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc--CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEc
Confidence 5688999999999999999999998888888775 789999999999987654433333333332 2334789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|++++++.|.+.+..
T Consensus 350 A~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 350 ALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TTTCTTGGGHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999887765
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.6e-22 Score=192.07 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=100.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||++||.+|||||||+++|+... +.....|.+..+.....+..++. .+.||||||+.++. .....
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----------~l~~~ 81 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----------SLIPS 81 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTTTCG----------GGHHH
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----------hHHHH
Confidence 4899999999999999999999653 43344455556666666666665 56799999975542 11245
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|.++. .....+.|+|||+||+|+.+.+... .+..+.++...++
T Consensus 82 ~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~-----------~~e~~~~a~~~~~ 150 (216)
T 4dkx_A 82 YIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS-----------IEEGERKAKELNV 150 (216)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSC-----------HHHHHHHHHHHTC
T ss_pred HhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCccc-----------HHHHhhHHHHhCC
Confidence 78899999999999986 1123578999999999997653221 1111111122367
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.||+++|+.|++.+.
T Consensus 151 ~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 151 MFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred eeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 8999999999999999999987654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-21 Score=180.61 Aligned_cols=158 Identities=21% Similarity=0.217 Sum_probs=113.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceee-eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREAL-VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~-v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.+|+++|.+|||||||+|+|++..... .....+ ++..............+.+|||||+. ++...+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~ 74 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG--ASFMTKTVQYQNELHKFLIWDTAGLE----------RFRALAPM 74 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCS--EEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGTHH
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcee--EEEEEEEEEECCeEEEEEEEcCCCch----------hhhcccHh
Confidence 689999999999999999999876421 112222 33333332222234689999999987 23344556
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+..+. .+...+... .++.|+++|+||+|+...+....+.........+. +++++||++|
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 153 (170)
T 1z0j_A 75 YYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETSAKNA 153 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTTT
T ss_pred hCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 78999999999999986655542 244444443 45789999999999987655544444555556665 7899999999
Q ss_pred CChHHHHHHhccch
Q 007334 278 LGMTELYEALRPSV 291 (607)
Q Consensus 278 ~gi~eL~~~i~~~l 291 (607)
.|++++++.|.+.+
T Consensus 154 ~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 154 ININELFIEISRRI 167 (170)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998655
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-21 Score=181.84 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=119.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++...... ..+. ++.+.....+..++ ..+.+|||||+. ++...+
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 76 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDD-SNHT--IGVEFGSKIINVGGKYVKLQIWDTAGQE----------RFRSVT 76 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCC--SEEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCc--cceEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 46899999999999999999998765322 2222 55566556666666 589999999987 344556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+.....+....+...+. +++++||+
T Consensus 77 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 155 (186)
T 2bme_A 77 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLETSAL 155 (186)
T ss_dssp HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEecCC
Confidence 7788999999999999986554442 122333332 35789999999999986555554555555556666 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 156 ~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 156 TGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-21 Score=185.18 Aligned_cols=160 Identities=20% Similarity=0.224 Sum_probs=115.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee-eeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA-LVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~-~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..+|+|+|.+|||||||+|+|++.... ......+ ++...........+..+.+|||||+. ++...+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 90 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIG--ASFMTKTVPCGNELHKFLIWDTAGQE----------RFHSLAP 90 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSS--EEEEEEEEECSSSEEEEEEEEECCSG----------GGGGGTH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcc--eeEEEEEEEeCCEEEEEEEEcCCCch----------hhHhhhH
Confidence 468999999999999999999987642 2222333 44444333333355789999999987 2333455
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.....+...+. +++++||++
T Consensus 91 ~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 169 (192)
T 2fg5_A 91 MYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA-IVVETSAKN 169 (192)
T ss_dssp HHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTC-EEEECBTTT
T ss_pred HhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 678999999999999987655442 233333333 24789999999999986555555555555666666 789999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|++++++.|.+.+.
T Consensus 170 ~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 170 AINIEELFQGISRQIP 185 (192)
T ss_dssp TBSHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987664
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-21 Score=179.30 Aligned_cols=158 Identities=25% Similarity=0.349 Sum_probs=108.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+|+|++|||||||+|+|++.... ++..++ +|.+...+.+.+.+..+.+|||||+....+.. . .......+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~--~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-~---~~~~~~~~ 76 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVY-IGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-I---DEIIARDY 76 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSS-CC-------CCCCCEEEEEETTEEEEEEECCCCSCSSSSS-H---HHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCee-ccCCCC--cceeeeEEEEEECCcEEEEEECCCcccCCCcc-h---hHHHHHHH
Confidence 57999999999999999999986542 444555 77787777788888999999999998543221 1 11222334
Q ss_pred h--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 201 L--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 201 ~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
+ ..+|++++|+|+++. .....+...+.+. +.|+++|+||+|+...+.... ........++. +++++||++|.
T Consensus 77 ~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~-~~~~~SA~~~~ 150 (165)
T 2wji_A 77 IINEKPDLVVNIVDATAL--ERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIEI-DVDKLEKILGV-KVVPLSAAKKM 150 (165)
T ss_dssp HHHHCCSEEEEEEETTCH--HHHHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTS-CEEECBGGGTB
T ss_pred HhcCCCCEEEEEecCCch--hHhHHHHHHHHhc--CCCEEEEEEchHhccccChhh-HHHHHHHHhCC-CEEEEEcCCCC
Confidence 4 389999999999862 1122233444443 789999999999875433221 12223334555 78999999999
Q ss_pred ChHHHHHHhccch
Q 007334 279 GMTELYEALRPSV 291 (607)
Q Consensus 279 gi~eL~~~i~~~l 291 (607)
|++++++.|.+.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (165)
T 2wji_A 151 GIEELKKAISIAV 163 (165)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999987654
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=179.59 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=111.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++....... .+...++...........+..+.+|||||+. ++......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~ 74 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQ-ESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE----------RYHSLAPM 74 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC-CCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCCcH----------HhhhhhHH
Confidence 368999999999999999999987643211 1211133322222222235689999999987 23344566
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++..+|++++|+|++++.+..+. .+...+... .++.|+++|+||+|+...+....+.....+...+. +++++||++|
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g 153 (170)
T 1r2q_A 75 YYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMETSAKTS 153 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 78999999999999986554432 222333332 45789999999999987555444555555555665 7899999999
Q ss_pred CChHHHHHHhccchH
Q 007334 278 LGMTELYEALRPSVE 292 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~ 292 (607)
.|++++++.|.+.+.
T Consensus 154 ~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 154 MNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=176.73 Aligned_cols=157 Identities=18% Similarity=0.167 Sum_probs=112.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..... .... ++.+.....+...+ ..+.+|||||+. ++.....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~ 69 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIE--KYDP--TIEDFYRKEIEVDSSPSVLEILDTAGTE----------QFASMRD 69 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCS--CCCT--TCCEEEEEEEEETTEEEEEEEEECCCTT----------CCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcc--cCCC--CcceeEEEEEEECCEEEEEEEEECCCch----------hhHHHHH
Confidence 589999999999999999999876432 2222 33333344445555 458999999987 2334455
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+. .+...+.+. ..+.|+++|+||+|+...+..............++ +++++||+
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFMETSAK 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEEECTT
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC-CEEEecCC
Confidence 678899999999999976554432 222223222 24789999999999987655544444455555666 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.+.
T Consensus 149 ~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 149 SKTMVDELFAEIVRQMN 165 (167)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999987654
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-21 Score=181.02 Aligned_cols=161 Identities=18% Similarity=0.192 Sum_probs=116.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeE-EEEeeeC-----------CeeEEEecCCCCccccCch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIR-EGLAKLG-----------DLRFKVLDSAGLETEATSG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~-~~~~~~~-----------~~~~~liDTpG~~~~~~~~ 187 (607)
..+|+|+|.+|||||||+|+|++...... ..+. .+.+.. ...+... ...+.+|||||+.
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~------ 81 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSK-FITT--VGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE------ 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCCC--CSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcC-cccc--cceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH------
Confidence 46899999999999999999998764211 1121 333333 2333333 3589999999997
Q ss_pred hHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
++...+..++..+|++++|+|++++.+..+ ..+...+.... .+.|+++|+||+|+...+....+.....+...
T Consensus 82 ----~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 157 (195)
T 3bc1_A 82 ----RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY 157 (195)
T ss_dssp ----GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc
Confidence 445566778999999999999998665554 22333333322 47899999999999875554444445555566
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
++ +++++||++|.|++++++.|.+.+.++
T Consensus 158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 158 GI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 76 789999999999999999999877654
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=184.36 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=118.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++.... .....+++.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 92 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE----------RFRSIT 92 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC---TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC---CCCCCccceeEEEEEEEECCEEEEEEEEECCCcH----------HHHHHH
Confidence 468999999999999999999987642 12222255666666666666 479999999987 444556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........+. +++++||+
T Consensus 93 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 171 (201)
T 2ew1_A 93 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLETSAK 171 (201)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 6788999999999999986554432 233333333 34689999999999986555444444444555666 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 172 ~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877553
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-21 Score=179.05 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=113.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++.... ..... +++.+.....+...+ ..+.+|||||+. ++...+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 81 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPH-TIGVEFGTRIIEVSGQKIKLQIWDTAGQE----------RFRAVT 81 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SSCTT-SCCCCEEEEEEEETTEEEEEEEEECTTGG----------GTCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCC-ccceEEEEEEEEECCeEEEEEEEECCCCh----------HhhhhH
Confidence 478999999999999999999987642 11111 123333333344443 579999999987 333456
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....++....+...+. +++++||+
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLEASAK 160 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 6788999999999999987555442 233333333 35789999999999987655555555555566676 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 161 ~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 161 TGENVEDAFLEAAKKI 176 (179)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999988655
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=184.41 Aligned_cols=162 Identities=17% Similarity=0.251 Sum_probs=95.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++.... ....+. ++.+.....+.+++ ..+.+|||||+. ++...+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 74 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFN-STFIST--IGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT 74 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHH--HCEEEEEEEEEETTEEEEEEEEEC-------------------C
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCc--ccceeEEEEEEECCEEEEEEEEcCCCCh----------hhhhhH
Confidence 468999999999999999999976542 111222 55666666666666 689999999987 344445
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.....+...++ +++++||+
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 153 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMETSAK 153 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEECCC-
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC-eEEEEeCC
Confidence 5678899999999999986554432 233333332 34789999999999987655544555555556676 78999999
Q ss_pred CCCChHHHHHHhccchHHHH
Q 007334 276 TGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~~ 295 (607)
+|.|++++++.|.+.+.+..
T Consensus 154 ~~~~i~~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKAKM 173 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999998876543
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=185.17 Aligned_cols=162 Identities=18% Similarity=0.223 Sum_probs=117.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..++|+|+|.+|||||||+|+|++.... ....+. ++.+.....+.+.+ ..+.+|||||+.. +...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~ 85 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITT--IGIDFKIKTVDINGKKVKLQLWDTAGQER----------FRTI 85 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCC--CSCCEEEEEEEETTEEEEEEEECCTTGGG----------GTCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCc--ccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHH
Confidence 3579999999999999999999987643 222333 56666666667776 6799999999872 2233
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
+..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+.. +....+.........++ +++++||
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~Sa 163 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGI-PFIESSA 163 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS-CCSCHHHHHHHHHHHTC-CEEECBT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc-cccCHHHHHHHHHHcCC-EEEEEeC
Confidence 45678899999999999886554442 233333333 23689999999999943 33333444444455666 7899999
Q ss_pred CCCCChHHHHHHhccchHHHH
Q 007334 275 ETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~~~ 295 (607)
++|.|++++++.|.+.+.+.+
T Consensus 164 ~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 164 KNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp TTTBSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999998876643
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.6e-21 Score=182.09 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=117.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++... .....+ ++.+.....+.+.+ ..+.+|||||+. ++...+
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 79 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP--TKADSYRKKVVLDGEEVQIDILDTAGQE----------DYAAIR 79 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCT--TCCEEEEEEEEETTEEEEEEEEECCCTT----------CCHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC--ccceEEEEEEEECCEEEEEEEEcCCChh----------hhHHHH
Confidence 47899999999999999999998764 333333 44444445555555 478999999987 333455
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+.... .+.|+++|+||+|+...+....+.....+...+. +++++||
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 158 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSA 158 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC-eEEEEeC
Confidence 6778899999999999986554432 2333333332 3789999999999987655555555555566676 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+..
T Consensus 159 ~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987755
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-21 Score=179.99 Aligned_cols=159 Identities=20% Similarity=0.228 Sum_probs=114.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHH-HH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTA-GM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~-~~ 196 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+.....+..++ ..+.+|||||+. ++. ..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 86 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EAT--IGVDFRERAVDIDGERIKIQLWDTAGQE----------RFRKSM 86 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCC--CSCCEEEEEEEETTEEEEEEEEECCCSH----------HHHTTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCC--cceEEEEEEEEECCEEEEEEEEECCCch----------hhhhhh
Confidence 468999999999999999999987653221 222 44445555555555 589999999987 444 45
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
+..++..+|++|+|+|++++.+.... .+...+.+. ..+.|+++|+||+|+...+....+.........++ +++++|
T Consensus 87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S 165 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFETS 165 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEECC
T ss_pred hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-EEEEEe
Confidence 66788999999999999986554442 233333332 34789999999999987655544545555556676 789999
Q ss_pred cCCC---CChHHHHHHhccchH
Q 007334 274 AETG---LGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g---~gi~eL~~~i~~~l~ 292 (607)
|++| .|++++++.|.+.+.
T Consensus 166 a~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 166 AKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SSSGGGGSCHHHHHHHHC----
T ss_pred CCcCCcccCHHHHHHHHHHHHh
Confidence 9999 999999999987664
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-21 Score=191.53 Aligned_cols=155 Identities=25% Similarity=0.377 Sum_probs=118.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|++|||||||+|+|+|.. ..+++.+|+|.+.....+.+++..+.||||||+.+..... .....+..++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~~~~~ 77 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS----IDELIARNFI 77 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC----HHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC----HHHHHHHHhh
Confidence 3689999999999999999999875 5888999999999999999999999999999987653211 1112233344
Q ss_pred --hhccEEEEEeccchh--------hHHhcC-CcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 404 --MRAHVVALVLDAEEV--------RAVEEG-RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 404 --~~ad~~llViD~~~~--------~~~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
..+|++++|+|+++. .....+ +|+++|+||+|+.+..........+ .+.+ ++|++++
T Consensus 78 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l--------~~~l----g~~~~~~ 145 (271)
T 3k53_A 78 LDGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM--------RKEL----GVPVIPT 145 (271)
T ss_dssp HTTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH--------HHHH----SSCEEEC
T ss_pred hccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH--------HHHc----CCcEEEE
Confidence 579999999999986 233456 9999999999986432221112222 1111 5799999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHh
Q 007334 473 SALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
||++|.|++++++.+.+.+....
T Consensus 146 Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 146 NAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp BGGGTBTHHHHHHHHHHHHHTCC
T ss_pred EeCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999998876543
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=196.61 Aligned_cols=163 Identities=25% Similarity=0.240 Sum_probs=122.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc---hhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS---GSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~---~~~~~~~~~~ 196 (607)
.++|+++|.+|||||||+|+|++.. ..+++.++ +|.+...+.+...+..+.+|||||+....+. .... +....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g--~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~-e~i~~ 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAG--VTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD-EQIAC 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTT--SSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHH-HHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCC--eeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHH-HHHHH
Confidence 3689999999999999999999987 46788888 8999999999988899999999999854421 1111 11112
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.......+|++++|+|+++. .....+..++.+. +.|+++|+||+|+......... .......+|+ +++++||++
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-~~~l~~~lg~-~~i~~SA~~ 152 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNL--ERNLYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIE-IDALSARLGC-PVIPLVSTR 152 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHH--TCCEEEEEECHHHHHHTTEEEC-HHHHHHHHTS-CEEECCCGG
T ss_pred HHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhc--CCCEEEEEECccchhhhhHHHH-HHHHHHhcCC-CEEEEEcCC
Confidence 22234799999999999872 3334566777776 7899999999998764332111 1223344566 889999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|+++|++.|.+.++
T Consensus 153 g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKA 168 (274)
T ss_dssp GHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987654
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=180.87 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=90.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+|+|++.....+.+.+|++.+ ..+.+++. .+.+|||||..+.. .....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~ 68 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGR----------WLPGH 68 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccch----------hhhhh
Confidence 37999999999999999999998776677777887765 23345554 67799999965432 11234
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..++|+++|+||+|+.+....... .. ..+.. ..+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~--~~-----~~~~~----~~~ 137 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVD--EG-----RACAV----VFD 137 (166)
T ss_dssp ----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHH--HH-----HHHHH----HTT
T ss_pred hhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHH--HH-----HHHHH----HhC
Confidence 56789999999999875 111 247899999999999865332211 00 11111 135
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+.+.+.+
T Consensus 138 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 138 CKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp CEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999999887654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.4e-21 Score=183.26 Aligned_cols=163 Identities=19% Similarity=0.251 Sum_probs=117.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. .+.+.....+... +..+.+|||||+. ++...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAF-VST--VGIDFKVKTIYRNDKRIKLQIWDTAGLE----------RYRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCC-CCC--CSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCc-CCc--cceeEEEEEEEECCeEEEEEEEECCCch----------hhcchH
Confidence 468999999999999999999987643211 121 2233333333333 4689999999987 344556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEASAK 153 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC-EEEECBTT
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC-eEEEEECC
Confidence 7788999999999999886554432 233333332 24789999999999987655544555555566676 78999999
Q ss_pred CCCChHHHHHHhccchHHHHh
Q 007334 276 TGLGMTELYEALRPSVEDYML 296 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~~~ 296 (607)
+|.|++++++.|.+.+.+.+.
T Consensus 154 ~~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 154 DNINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp TTBSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999988766543
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-21 Score=185.26 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=118.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeec-cCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVY-NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~-~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
...+|+|+|.+|||||||+|+|++....... ...+ ++...........+..+.+|||||+. .+...+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 89 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG--IDFKVKTVYRHEKRVKLQIWDTAGQE----------RYRTIT 89 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--TTEEEEEEEETTTTEEEEEECHHHHH----------HCHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--eEEEEEEEEECCEEEEEEEEeCCChH----------HHHHHH
Confidence 4679999999999999999999987632111 1111 23333333333456789999999976 455667
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 168 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFEASAK 168 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTT
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEECC
Confidence 7889999999999999976554432 233344433 25789999999999987665555555556666777 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 169 ~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 169 ENISVRQAFERLVDAICD 186 (191)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887755
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=179.85 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=115.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++...... ..+. ++.+.....+.+.+ ..+.+|||||+.. +...+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~ 81 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNT-YQAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIP 81 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSS-CCCC--CSEEEEEEEEEETTEEEEEEEEEECCSGG----------GGGGSH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCc--eeeEEEEEEEEECCeEEEEEEEECCCcHH----------HHHHHH
Confidence 6899999999999999999998764322 2232 56666666666666 4799999999872 333445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..........+...+. +++++||++
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIETSAKA 160 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 678899999999999875544432 222222222 34789999999999987655545555555556666 789999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.|++++++.|.+.+.
T Consensus 161 ~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 161 GYNVKQLFRRVAAALP 176 (179)
T ss_dssp TBSHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987664
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=182.66 Aligned_cols=161 Identities=18% Similarity=0.183 Sum_probs=115.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++........ +. ++.+.....+..++ ..+.+|||||+.. +...+
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 87 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LT--IGVEFGARMVNIDGKQIKLQIWDTAGQES----------FRSIT 87 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC--------CCSSEEEEEEEETTEEEEEEEECCTTGGG----------TSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-Cc--ccceeEEEEEEECCEEEEEEEEECCCchh----------hhhhH
Confidence 4689999999999999999999876543322 22 34444444555555 5899999999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.....+...++ .++++||+
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 166 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IFMETSAK 166 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 5678899999999999886554442 233333332 34789999999999987555544555555556676 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.++
T Consensus 167 ~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877653
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.2e-21 Score=184.58 Aligned_cols=160 Identities=21% Similarity=0.243 Sum_probs=118.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC------------CeeEEEecCCCCccccCch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG------------DLRFKVLDSAGLETEATSG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~ 187 (607)
..+|+|+|.+|||||||+|+|++...... ..+ +++.+.....+.+. ...+.||||||+.
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~------ 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK-FIT--TVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCE-EEE--EEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcC-CCC--ceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH------
Confidence 46899999999999999999998754211 111 13333333333333 4679999999976
Q ss_pred hHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhC-----CCCcEEEEecCCCcccCCcCcHHHHHHHHH
Q 007334 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA-----PQIKPIVAMNKCESLHNGTGSLAGAAAESL 262 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~-----~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~ 262 (607)
++...+..++..+|++|+|+|++++.+..+ +..|+.... .+.|+++|+||+|+...+............
T Consensus 96 ----~~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~ 169 (217)
T 2f7s_A 96 ----RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD 169 (217)
T ss_dssp ----HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ----hHHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH
Confidence 566677788999999999999987654443 446666542 578999999999998765554455555556
Q ss_pred hcCCCCcEEeecCCCCChHHHHHHhccchHHHH
Q 007334 263 MLGFGDPIAISAETGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 263 ~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~ 295 (607)
..++ +++++||++|.|+++++++|.+.+.+.+
T Consensus 170 ~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 170 KYGI-PYFETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp HTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HCCC-cEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 6676 7899999999999999999998876644
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=178.51 Aligned_cols=159 Identities=17% Similarity=0.180 Sum_probs=116.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++... ...... ++.+.....+...+ ..+.+|||||+. ++...+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 83 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP--TKADSYRKKVVLDGEEVQIDILDTAGQE----------DYAAIR 83 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCT--TCCEEEEEEEEETTEEEEEEEEECCCTT----------CCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCC--ccceEEEEEEEECCEEEEEEEEECCCCc----------ccHHHH
Confidence 36899999999999999999998764 233333 44444444455555 478999999987 233455
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+.....+....+...++ +++++||
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 162 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYVETSA 162 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-eEEEeCC
Confidence 6778899999999999976544432 222223322 23789999999999987655555555556666676 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=195.74 Aligned_cols=151 Identities=26% Similarity=0.394 Sum_probs=112.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.||||||||+|+|+|.. ..++++||+|++...+.+.. +..+.+|||||+.+..... .+ ...+..++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~-~~---e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS-PE---AKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS-HH---HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC-hH---HHHHHHHH
Confidence 4789999999999999999999864 67889999999988777665 7789999999987653211 11 11223444
Q ss_pred h--hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 M--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 ~--~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
. .+|++++|+|+++. ...+.++|+++|+||+|+..........+.+. .. .++|++++|
T Consensus 77 ~~~~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~----~~--------lg~~vi~~S 144 (272)
T 3b1v_A 77 LSQRADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLS----YH--------LGVPVVATS 144 (272)
T ss_dssp HTTCCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHH----HH--------HTSCEEECB
T ss_pred hcCCCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHH----HH--------cCCCEEEEE
Confidence 4 59999999999886 23346899999999999864322111112221 11 157999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~ 492 (607)
|++|.|++++|+.+.+.+.
T Consensus 145 A~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHHh
Confidence 9999999999999987653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=180.71 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=98.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.......+.+|++.. ...+.+++. .+.+|||||+.... +. .....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~-------~~-~~~~~ 73 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVY--ERTLTVDGEDTTLVVVDTWEAEKLD-------KS-WSQES 73 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEE--EEEEEETTEEEEEEEECCC--------------C-HHHHH
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCcccccee--EEEEEECCEEEEEEEEecCCCCccc-------hh-hhHHh
Confidence 47999999999999999999998866666666666543 344566665 67899999964421 00 12234
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..++|+++|+||+|+.+...... +.. . .+.. ..+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~-~----~~~~----~~~ 142 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV--EEG-R----ACAV----VFD 142 (175)
T ss_dssp TTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH--HHH-H----HHHH----HHT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH--HHH-H----HHHH----HcC
Confidence 56779999999999875 111 13789999999999976533211 111 0 1111 124
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+...
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 143 CKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999998876543
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-21 Score=181.98 Aligned_cols=161 Identities=19% Similarity=0.143 Sum_probs=115.4
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..++|+|||.+|||||||+|+|++..... ...+. ++.+.....+.+++ ..+.+|||||+.... . ..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~--~~ 89 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPE--NPEDTYERRIMVDKEEVTLVVYDIWEQGDAG-------G--WL 89 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTT--SCTTEEEEEEEETTEEEEEEEECCCCCSGGG-------H--HH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCC--cccceEEEEEEECCEEEEEEEEecCCCccch-------h--hh
Confidence 35799999999999999999998754332 23343 55565555556655 467899999997311 1 13
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC--CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA--PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
...++..+|++++|+|++++.+.... .+...+.... .+.|+++|+||+|+...+....++....+...+. +++++|
T Consensus 90 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~S 168 (195)
T 3cbq_A 90 RDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETS 168 (195)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEEEB
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-EEEEEc
Confidence 34567899999999999886554442 2222233322 3789999999999987655555555555556666 789999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.|.+.+.
T Consensus 169 a~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-21 Score=176.71 Aligned_cols=157 Identities=16% Similarity=0.169 Sum_probs=110.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.... ..... ++.+.....+... +..+.+|||||+.. +.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~ 69 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDP--TIEDSYRKQVEVDCQQCMLEILDTAGTEQ----------FTAMRD 69 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC--CSCCC--CSEEEEEEEEESSSCEEEEEEEEECSSCS----------STTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCC--CccceEEEEEEECCEEEEEEEEECCChHH----------HHHHHH
Confidence 57999999999999999999986542 22222 3333333333333 45789999999873 223345
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........+..+++++||+
T Consensus 70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCC
Confidence 677889999999999986544442 233333332 34789999999999987655544444445555533378999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 150 SKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-21 Score=177.13 Aligned_cols=157 Identities=19% Similarity=0.261 Sum_probs=111.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..... ...+. .+.+.....+.+.+ ..+.+|||||+. ++...+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~ 70 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAE-NKEPT--IGAAFLTQRVTINEHTVKFEIWDTAGQE----------RFASLAP 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCT-TCCCC--SSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCc--cceeEEEEEEEECCEEEEEEEEECCCCh----------hhhhhhh
Confidence 579999999999999999999876421 12222 33333334444443 579999999987 2333456
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccC---CcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHN---GTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+... +..............+. +++++|
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~~~S 149 (170)
T 1ek0_A 71 XYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFFETS 149 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECC
T ss_pred hhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEEEEe
Confidence 678999999999999986555442 222333332 357899999999999865 33333444444555666 789999
Q ss_pred cCCCCChHHHHHHhccch
Q 007334 274 AETGLGMTELYEALRPSV 291 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l 291 (607)
|++|.|++++++.|.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 150 AKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp TTTCTTHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=182.47 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=113.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++........ +. .+.+.....+.. .+..+.+|||||+.. +...+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 91 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSR-TT--IGVEFSTRTVMLGTAAVKAQIWDTAGLER----------YRAIT 91 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCC-CC--SSEEEEEEEEEETTEEEEEEEEEESCCCT----------TCTTH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-Cc--cceeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhh
Confidence 4689999999999999999999876543221 11 222222223333 346789999999973 22344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..........+...++ .++++||+
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 170 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-LFLETSAL 170 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEECTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 5678999999999999886554431 222333322 34789999999999987655444545555556666 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.++
T Consensus 171 ~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 171 DSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877553
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=199.20 Aligned_cols=166 Identities=26% Similarity=0.378 Sum_probs=126.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
..|+|+|+||||||||+|+|++...++++..++ +|++...+.+..++.++.+|||||+... +...+...+...+..+
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~--tTr~~~~gi~~~~~~~i~~iDTpG~~~~-~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ--TTRHRIVGIHTEGAYQAIYVDTPGLHME-EKRAINRLMNKAASSS 85 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS--CCSSCEEEEEEETTEEEEEESSSSCCHH-HHHHHHHHHTCCTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCC--cceeeEEEEEEECCeeEEEEECcCCCcc-chhhHHHHHHHHHHHH
Confidence 479999999999999999999998887777777 8888888888888899999999998610 1111111222334556
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~i~iSA~~g~g 279 (607)
+..+|++++|+|+++ .+..+..+.+.+... +.|+++|+||+|+..... ........+. .+++..++++||++|.|
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~-~~~~~l~~l~~~~~~~~~i~iSA~~g~~ 161 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLREG--KAPVILAVNKVDNVQEKA-DLLPHLQFLASQMNFLDIVPISAETGLN 161 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHSS--SSCEEEEEESTTTCCCHH-HHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc--CCCEEEEEECcccCccHH-HHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence 789999999999988 888877777777654 789999999999876211 1222233333 34555689999999999
Q ss_pred hHHHHHHhccchHH
Q 007334 280 MTELYEALRPSVED 293 (607)
Q Consensus 280 i~eL~~~i~~~l~~ 293 (607)
+++|++.|.+.+++
T Consensus 162 v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 162 VDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999887653
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=180.34 Aligned_cols=149 Identities=19% Similarity=0.128 Sum_probs=108.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+.... ..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 76 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI----------TS 76 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC----------CG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh----------HH
Confidence 35899999999999999999999764 3456677788888777888888 57889999996544211 12
Q ss_pred HHHhhccEEEEEeccchh-------------hHHhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-------------RAVEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-------------~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++..+|++++|+|++++ .....++|+++|+||+|+.+..... ..... +.. ..+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~~ 144 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYK--------FAG----QMG 144 (181)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHH--------HHH----HHT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHH--------HHH----HcC
Confidence 356789999999999876 1112368999999999987643221 11111 111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+.+.
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 145 IQLFETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999998876543
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=186.80 Aligned_cols=164 Identities=19% Similarity=0.195 Sum_probs=114.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEE-EcCeEEEEEecCCCcccccccC-cchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFE-YQGRTVYLVDTAGWLQREKEKG-PASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~-~~~~~~~~~~ 400 (607)
.++|+++|.+|||||||+|+|++.. ...+++.+|+|++.....+. .++..+.||||||+........ .+.+. ....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~~~ 107 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE-QLLS 107 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH-HHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH-HHHH
Confidence 5799999999999999999999886 35788999999987655554 4567899999999765422111 11111 1222
Q ss_pred HHHhh---ccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh--CCCCC
Q 007334 401 KNLMR---AHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV--IPQVT 465 (607)
Q Consensus 401 ~~i~~---ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 465 (607)
.++.. +|++++|+|++++ .....++|+++|+||+|+.+........+.+.+ .+... .....
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~----~l~~~~~~~~~~ 183 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQK----SLDAYRDAGYAG 183 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHH----HHHHHHHHTCCS
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHH----HHHhhhhcccCC
Confidence 34444 8999999999864 222358999999999999865332222222222 22211 01124
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+++++||++|.|++++++.|.+.+.
T Consensus 184 ~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 184 KLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp CEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred CCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 678999999999999999999987654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.7e-21 Score=182.94 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=117.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++... ...... ++.+.....+...+ ..+.+|||||+. ++....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 88 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVP--TVFENFSHVMKYKNEEFILHLWDTAGQE----------EYDRLR 88 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCC--CSEEEEEEEEEETTEEEEEEEEEECCSG----------GGTTTG
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC--CCccCC--eeeeeeEEEEEECCEEEEEEEEECCCcH----------HHHHHh
Confidence 36899999999999999999998764 222222 34444344445555 456999999987 233344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC--CcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN--GTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..++..+|++++|+|++++.+..+. .+...++....+.|+++|+||+|+... +....+.....+...+...++++|
T Consensus 89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (194)
T 3reg_A 89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEAS 168 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECB
T ss_pred HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEee
Confidence 5678899999999999987666552 355556555667999999999999864 334455555666677875599999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++++.|.+.+.
T Consensus 169 a~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 169 SVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=178.13 Aligned_cols=148 Identities=21% Similarity=0.263 Sum_probs=106.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+++|++.....+.++.|++. ..+.+++..+.+|||||+.+.. .....+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~~~~~----------~~~~~~ 80 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQRKIR----------PYWRSY 80 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSCGGGH----------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE----EEEEECCEEEEEEECCCCHHHH----------HHHHHH
Confidence 35899999999999999999999886655666666543 3456778999999999964331 223467
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++. ... ..++|+++|+||+|+.+.... +.+. ..+........+.
T Consensus 81 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~----~~~~~~~~~~~~~ 152 (181)
T 1fzq_A 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA----SEIA----EGLNLHTIRDRVW 152 (181)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH----HHHH----HHTTGGGCCSSCE
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH----HHHH----HHhCchhccCCce
Confidence 7899999999999874 011 247899999999999865321 1111 1111111223356
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 153 ~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 153 QIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987543
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=178.74 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=113.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++...... ..+ +++.+.....+...+ ..+.+|||||+.. +...+
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKD-YKK--TIGVDFLERQIQVNDEDVRLMLWDTAGQEE----------FDAIT 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCC-SSC--CCSSSEEEEEEEETTEEEEEEEECCTTGGG----------TTCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCCC-CCC--ceEEEEEEEEEEECCEEEEEEEEcCCCcHh----------HHHHH
Confidence 46899999999999999999998764211 122 244455555555554 4799999999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
..++..+|++++|+|++++.+..+. .+...+.....+.|+++|+||+|+...+....+.........++ +++++||++
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRTSVKE 150 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEEecCC
Confidence 5678899999999999886544432 23333333235789999999999987555444555555556676 889999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|.|++++++.|.+.+
T Consensus 151 ~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 151 DLNVSEVFKYLAEKH 165 (168)
T ss_dssp TBSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998755
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.1e-21 Score=181.44 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=113.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC------------------------------
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD------------------------------ 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~------------------------------ 169 (607)
..+|+|+|.+|||||||+|+|++.... .... .+++.+.....+.+.+
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFH--ENTN-TTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCC--SSCC-CCCSCEEEEEEEETTC------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCC--CCcC-ccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 468999999999999999999987643 1111 1133444444444443
Q ss_pred ---------eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEE
Q 007334 170 ---------LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIV 239 (607)
Q Consensus 170 ---------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~il 239 (607)
..+.+|||||+.. +...+..++..+|++++|+|++++.+..+. .+...+.... +.|+++
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piil 152 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQER----------YASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIIL 152 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGG----------CTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEE
T ss_pred ccccCccceeEEEEEECCCcHH----------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEE
Confidence 7899999999872 333456678999999999999987655542 2333333322 489999
Q ss_pred EecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 240 V~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
|+||+| ........++....+...+. +++++||++|.|+++++++|.+.+.++
T Consensus 153 v~NK~D-~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 153 VANKID-KNKFQVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp EEECTT-CC-CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECCC-cccccCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999 44344445555556666676 889999999999999999998876543
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-21 Score=183.78 Aligned_cols=161 Identities=19% Similarity=0.192 Sum_probs=113.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+.....+..++ ..+.+|||||+. ++...+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 91 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDS-NHT--IGVEFGSRVVNVGGKTVKLQIWDTAGQE----------RFRSVT 91 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC---------------CCEEEEEEEETTEEEEEEEECCTTHH----------HHSCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccC-CCc--ccceeEEEEEEECCeeeEEEEEcCCCcH----------hHHHHH
Confidence 468999999999999999999987653322 222 44455555555555 689999999986 343445
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+.....+....+...++ .++++||+
T Consensus 92 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~SA~ 170 (200)
T 2o52_A 92 RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSAL 170 (200)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEECTT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 6678999999999999986555442 122223322 35789999999999986555544555555556666 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 171 ~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 171 TGENVEEAFLKCARTILNK 189 (200)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877654
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-21 Score=178.32 Aligned_cols=159 Identities=18% Similarity=0.191 Sum_probs=114.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++... ...... ++.+.....+..++ ..+.+|||||+... ....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~ 74 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYF--VSDYDP--TIEDSYTKICSVDGIPARLDILDTAGQEEF----------GAMR 74 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCT--TCCEEEEEEEEETTEEEEEEEEECCCTTTT----------SCCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC--ccccCC--CcCceEEEEEEECCEEEEEEEEECCCchhh----------HHHH
Confidence 46899999999999999999998754 333333 45444445555665 47889999998732 2233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHH-Hhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWL-RKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l-~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+ +.. ..+.|+++|+||+|+...+..............+. +++++||
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 153 (181)
T 2fn4_A 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AYFEASA 153 (181)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECBT
T ss_pred HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEecC
Confidence 4567889999999999986544432 122222 222 34789999999999987655544544445555666 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+.+
T Consensus 154 ~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=184.04 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=114.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. .+.+.....+... +..+.+|||||+.... ..+
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAF-VST--VGIDFKVKTVYRHDKRIKLQIWDTAGQERYR----------TIT 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC-CCC--CCCEEEEEEEEETTEEEEEEEEECCSCCSSC----------CSG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCc-CCc--eeEEEEEEEEEECCeEEEEEEEeCCCcHHHh----------hhH
Confidence 468999999999999999999987653221 122 2223333333333 4689999999987322 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 167 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFEASAK 167 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEEECC
Confidence 4567899999999999886554442 233334333 24789999999999987655544455555556676 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 168 ~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 168 ENINVKQVFERLVDVICEK 186 (189)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999877653
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-21 Score=179.14 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=111.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++..... ...+. ++.+.....+.+.+ ..+.+|||||+... ...+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITT--IGIDFKIKTVDINGKKVKLQIWDTAGQERF----------RTIT 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC----------CCEEEEEEESSSCEEEEEEECCTTGGGT----------SCCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCc--cceeEEEEEEEECCEEEEEEEEeCCCChhh----------hhhH
Confidence 3589999999999999999999876431 22222 55555555556554 57899999998732 2234
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+.. +....+.........++ +++++||+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~Sa~ 147 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGI-PFIESSAK 147 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTC-CEEECBTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc-CccCHHHHHHHHHHcCC-eEEEEECC
Confidence 5677899999999999886554442 233333333 34789999999999943 33333444444555676 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 148 ~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 148 NDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887754
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-20 Score=176.85 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=114.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCee--EEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR--FKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++... ....++ ++.+.....+..++.. +.+|||||+. ++.....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 70 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF--VDEYDP--TIEDSYRKQVVIDGETCLLDILDTAGQE----------EYSAMRD 70 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC--CCCCCT--TCCEEEEEEEEETTEEEEEEEEECCCC-------------CTTHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC--CchheEEEEEEECCcEEEEEEEECCCcH----------HHHHHHH
Confidence 5899999999999999999998764 333333 5555555556666654 7789999987 3334455
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+.... ...+.........+. +++++||+
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 71 QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-VDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc-cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 678889999999999986554442 233333332 3478999999999997532 333444445555666 78999999
Q ss_pred CCCChHHHHHHhccchHHHH
Q 007334 276 TGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~~ 295 (607)
+|.|++++++.|.+.+....
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999998886643
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-21 Score=178.75 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=114.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++....... .+. ++.+.....+.+. ...+.+|||||+. ++...+
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 78 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQ-EST--IGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLA 78 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTS-CCC--SCCSEEEEEEEETTEEEEEEEEECCCSG----------GGGGGT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcC-CCC--ceeEEEEEEEEECCEEEEEEEEeCCCCh----------hhhhhh
Confidence 368999999999999999999987643211 122 3333333444444 3589999999987 233345
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+ ..+...+... .++.|+++|+||+|+...+....+.....+...++ +++++||+
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 157 (181)
T 2efe_B 79 PMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL-FFMETSAK 157 (181)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCSS
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC-EEEEEECC
Confidence 567899999999999988655443 2233333333 34789999999999987655545555555556666 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+..
T Consensus 158 ~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 158 TATNVKEIFYEIARRLPR 175 (181)
T ss_dssp SCTTHHHHHHHHHHTCC-
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999877643
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-21 Score=181.92 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=113.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC---eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD---LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..+|+++|.+|||||||+|+|++..... ...+. ++.+.....+.+.+ ..+.+|||||+.. +...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~ 72 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQT--IGLDFFLRRITLPGNLNVTLQIWDIGGQTI----------GGKM 72 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHT--TTSSEEEEEEEETTTEEEEEEEEECTTCCT----------TCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCc--eeEEEEEEEEEeCCCCEEEEEEEECCCCcc----------ccch
Confidence 3689999999999999999999876421 11121 33455556666655 7899999999873 2233
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh---CCCCc-EEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH---APQIK-PIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~---~~~~p-~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
+..++..+|++++|+|++++.+..+. .+...+... ..+.| +++|+||+|+...+....+.........++ ++++
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 151 (178)
T 2hxs_A 73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF-SSHF 151 (178)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEE
T ss_pred hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC-cEEE
Confidence 45678999999999999986655442 233333331 12456 789999999987554444444445555676 7899
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|++++++.|.+.+.
T Consensus 152 ~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 152 VSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp ECTTTCTTHHHHHHHHHHHHT
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987664
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.5e-21 Score=180.99 Aligned_cols=151 Identities=21% Similarity=0.223 Sum_probs=111.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+.. ....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 83 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TITS 83 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC----------TTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh----------hhHH
Confidence 35899999999999999999999764 4455667777787777788877 467899999965432 1134
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +.. .++.. ..+
T Consensus 84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~ 152 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY--TTA-----KEFAD----SLG 152 (196)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHH-----HHHHH----HTT
T ss_pred HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH--HHH-----HHHHH----HcC
Confidence 5778899999999998751 01 23789999999999986543221 010 11111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
++++++||++|.|++++|+.+.+.+.+..
T Consensus 153 ~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQSFMTMAAEIKKRM 181 (196)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 79999999999999999999988776543
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-21 Score=175.73 Aligned_cols=147 Identities=27% Similarity=0.346 Sum_probs=103.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.+|+++|.+|||||||+|+|++.....+.+.+++|.+.....+.+++..+.||||||+..... ...........++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHHHH
Confidence 479999999999999999999887666788899999998888889999999999999765321 11112233456778
Q ss_pred hccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC-CEEEcc
Q 007334 405 RAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI-PVVFTS 473 (607)
Q Consensus 405 ~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~iS 473 (607)
.+|++++|+|+++. .....++|+++|+||+|+.+... .. .+ +.. .+. +++++|
T Consensus 79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~----~~-~~~-~~~~~~~~~S 142 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL----------YL----GP-LYG-LGFGDPIPTS 142 (161)
T ss_dssp TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG----------GC----GG-GGG-GSSCSCEECB
T ss_pred hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH----------hH----HH-HHh-CCCCCeEEEe
Confidence 99999999999874 12235899999999999975421 00 01 111 133 799999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~ 490 (607)
|++|.|++++|+.+.+.
T Consensus 143 a~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 143 SEHARGLEELLEAIWER 159 (161)
T ss_dssp TTTTBSHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHh
Confidence 99999999999988764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-21 Score=178.17 Aligned_cols=159 Identities=20% Similarity=0.190 Sum_probs=110.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++..... ...+. ++.+.....+..++ ..+.+|||||+. ++....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 72 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFND-KHITT--LGASFLTKKLNIGGKRVNLAIWDTAGQE----------RFHALG 72 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCC--CSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCc--cceEEEEEEEEECCEEEEEEEEECCCcH----------hhhhhH
Confidence 3689999999999999999999876421 11222 44444444455444 478999999987 344444
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+..+.. +...+... ..+.|+++|+||+|+...+....+.....+...+. +++++||+
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 151 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYHTSAK 151 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEEBTT
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEecCC
Confidence 56788999999999998865544321 22223322 24789999999999987655555555555666675 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.+.
T Consensus 152 ~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 152 QNKGIEELFLDLCKRMI 168 (170)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999987653
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.9e-21 Score=177.08 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=108.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++....... .+ +............ ...+.+|||||+. ++.....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~---t~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~ 69 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESY-IP---TVEDTYRQVISCDKSICTLQITDTTGSH----------QFPAMQR 69 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSC-CC---CSCEEEEEEEEETTEEEEEEEEECCSCS----------SCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CC---CccccEEEEEEECCEEEEEEEEECCCch----------hhHHHHH
Confidence 58999999999999999999986542111 11 1111111222223 3578999999987 2334456
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.++..+|++++|+|++++.+..+ ..+...+.+. .++.|+++|+||+|+...+..............+. +++++||
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 148 (172)
T 2erx_A 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFMETSA 148 (172)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECBT
T ss_pred HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEecC
Confidence 67888999999999997654443 2334444433 24789999999999987655544444444455565 7899999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|+++++++|.+.+.
T Consensus 149 ~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 149 KLNHNVKELFQELLNLEK 166 (172)
T ss_dssp TTTBSHHHHHHHHHHTCC
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999987653
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=175.62 Aligned_cols=147 Identities=24% Similarity=0.289 Sum_probs=107.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ....+++++.+.....+.+++.. +.||||||..+... ....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 71 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA----------MRDQ 71 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT----------THHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH----------HHHH
Confidence 5899999999999999999999764 35566777777777777777765 56799999654421 1235
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++. ... ..++|+++|+||+|+.+.....+....+. .. .+
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~--------~~ 139 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLA----RS--------YG 139 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHH----HH--------HT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHH----HH--------cC
Confidence 67789999999999875 011 13789999999999985433322222221 11 15
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+.+.
T Consensus 140 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 140 IPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999998877543
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-21 Score=183.08 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=114.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++... ...... ++.+.....+..++ ..+.+|||||+... ....
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~ 83 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVP--TVFDHYAVSVTVGGKQYLLGLYDTAGQEDY----------DRLR 83 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCC--SSCCCEEEEEESSSCEEEEEEECCCCSSSS----------TTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCC--cccceeEEEEEECCEEEEEEEEECCCCcch----------hHHH
Confidence 46899999999999999999998754 222232 44444444455555 67899999998732 2233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+.+..++.|+++|+||+|+... +....++....+..
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (194)
T 2atx_A 84 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE 163 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH
Confidence 4567899999999999987655542 344555555568999999999999763 12334444445555
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
.+..+++++||++|.|++++++.|.+.+
T Consensus 164 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 164 IGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 6665789999999999999999987654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=183.56 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=113.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|||.+|||||||+|+|++....++...+. ++.+.....+.+++. .+.+|||+|+.. ......
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~--~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~---------~~~~l~ 105 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV--LGEDTYERTLMVDGESATIILLDMWENKG---------ENEWLH 105 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEETTEEEEEEEECCTTTTH---------HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc--cceeeEEEEEEECCeeeEEEEeecCCCcc---------hhhhHH
Confidence 3689999999999999999999765444443333 445554555556664 568899999871 122233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..+++.+|++++|+|+++..+.... .+...+.+. ..+.|+++|+||+|+...+....++....+...+. +++++||
T Consensus 106 ~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-~~~e~SA 184 (211)
T 2g3y_A 106 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFIETSA 184 (211)
T ss_dssp HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC-EEEEEeC
Confidence 4467789999999999986555542 233334332 24789999999999987555544444444455565 7899999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|++++|+.|.+.+.
T Consensus 185 k~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 185 AVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999987664
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-22 Score=207.88 Aligned_cols=171 Identities=26% Similarity=0.339 Sum_probs=123.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.. ..+.+.+++|.+.....+..++..+.+|||||+.+..... ..... .+...+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-~~~~~-~~~~~~ 242 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISE-RNEIE-KQAILA 242 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTT-SCHHH-HHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhh-hhHHH-HHHHHH
Confidence 35799999999999999999999875 5677889999988888888888999999999987652211 11111 122222
Q ss_pred -HhhccEEEEEeccchh------------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 403 -LMRAHVVALVLDAEEV------------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 403 -i~~ad~~llViD~~~~------------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
...+|++++|+|++.. .... .++|+++|+||+|+..... .+...+ ... ..+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~----~~~~~~----~~~-----~~~ 309 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN----IKRLEK----FVK-----EKG 309 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH----HHHHHH----HHH-----HTT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH----HHHHHH----HHH-----hcC
Confidence 2359999999997652 1111 2899999999999976421 111111 111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 509 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~~~~~~~l~~~l~~ 509 (607)
.+++++||++|+|++++++.+.+.+.....++..+.++++++.
T Consensus 310 ~~~~~iSA~~g~gi~~l~~~i~~~l~~~~~~~~~~~~~~~l~r 352 (357)
T 2e87_A 310 LNPIKISALKGTGIDLVKEEIIKTLRPLAEKVAREKIERELRR 352 (357)
T ss_dssp CCCEECBTTTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEeCCCCcCHHHHHHHHHHHHHHHHhhhcchhHHHHHHh
Confidence 6899999999999999999999988777666667777777654
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=186.48 Aligned_cols=160 Identities=24% Similarity=0.281 Sum_probs=119.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.... +++.|+ +|.+...+.+...+..+.+|||||+....+.... + ..+..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg--~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--e--~v~~~ 77 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VANWPG--VTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID--E--KIARD 77 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTT--SCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH--H--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCC--ceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH--H--HHHHH
Confidence 368999999999999999999997754 677887 8999888888888999999999999855432211 1 12233
Q ss_pred Hh--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VL--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++ ..+|++++|+|+++.. ....+...+.+. +.|+++|+||+|+...+..... .......+|+ +++++||++|
T Consensus 78 ~~~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~-~~~l~~~lg~-~vi~~SA~~g 151 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVNPE--QSLYLLLEILEM--EKKVILAMTAIDEAKKTGMKID-RYELQKHLGI-PVVFTSSVTG 151 (258)
T ss_dssp HHHHSCCSEEEEEEETTSCH--HHHHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBC-HHHHHHHHCS-CEEECCTTTC
T ss_pred HHhhcCCCEEEEEeCCCchh--hHHHHHHHHHhc--CCCEEEEEECcCCCCccchHHH-HHHHHHHcCC-CEEEEEeeCC
Confidence 33 5899999999998742 223344445444 7899999999999764432221 2233445676 8899999999
Q ss_pred CChHHHHHHhccchH
Q 007334 278 LGMTELYEALRPSVE 292 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~ 292 (607)
.|+++|++.|.+.++
T Consensus 152 ~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 152 EGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhh
Confidence 999999999987553
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-21 Score=185.73 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=115.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++... ...... ++.+.....+..++. .+.+|||||++. +....
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 95 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGLED----------YDRLR 95 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCC--CSEEEEEEEEECC-CEEEEEEEEECCSGG----------GTTTG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCC--eecceeEEEEEECCEEEEEEEEECCCchh----------hHHHH
Confidence 46899999999999999999997654 233333 555555555555554 456999999972 33344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+..... .........+..
T Consensus 96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 4gzl_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175 (204)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh
Confidence 5578899999999999987666653 35555655556899999999999986432 233444455566
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
.+..+++++||++|.|++++++.|.+.
T Consensus 176 ~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 176 IGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 676568999999999999999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=176.44 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=113.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++.... ..... ++.+.........+. .+.+|||||+.. +....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 83 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDP--TIEDSYLKHTEIDNQWAILDVLDTAGQEE----------FSAMR 83 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCSCGG----------GCSSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCC--CccceeEEEEEeCCcEEEEEEEECCCchh----------hHHHH
Confidence 468999999999999999999976542 22222 333333455555554 466799999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+....+.........+. +++++||
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 162 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI-PYIETSA 162 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC-CEEEEBC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC-eEEEecc
Confidence 5677889999999999986554442 222223221 34789999999999987666655656666666676 7899999
Q ss_pred C-CCCChHHHHHHhccchH
Q 007334 275 E-TGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~-~g~gi~eL~~~i~~~l~ 292 (607)
+ +|.|++++++.|.+.+.
T Consensus 163 ~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp SSSCBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9 99999999999987664
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=177.29 Aligned_cols=150 Identities=21% Similarity=0.180 Sum_probs=109.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++. .....+.+++.+.....+.+++. .+.||||||..+... ...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~ 75 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS--YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----------MRE 75 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS--SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----------CHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC--cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH----------HHH
Confidence 3589999999999999999999986 34456677777766666777775 677899999754421 123
Q ss_pred HHHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++..+|++++|+|+++. .. ...++|+++|+||+|+.+..... +... .+.. .
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~--------~~~~----~ 143 (181)
T 2fn4_A 76 QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS--------AFGA----S 143 (181)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH--------HHHH----H
T ss_pred HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHH--------HHHH----H
Confidence 466789999999999875 11 12478999999999997643221 1111 1111 1
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
.+++++++||++|.|++++|+.|.+.+.++..
T Consensus 144 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 144 HHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 25689999999999999999999887765443
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=181.35 Aligned_cols=160 Identities=17% Similarity=0.158 Sum_probs=108.1
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
...+|+|+|.+|||||||+|+|++....... .+. .+.+.....+.+++ ..+.+|||||+. ++...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~ 93 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENI-SAT--LGVDFQMKTLIVDGERTVLQLWDTAGQE----------RFRSI 93 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC-------------CEEEEEEETTEEEEEEEEECTTCT----------TCHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccC-CCC--ccceeEEEEEEECCEEEEEEEEECCCCc----------chhhh
Confidence 3579999999999999999999987642111 111 22233333344444 579999999987 34445
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCccc------CCcCcHHHHHHHHHhcCCCC
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLH------NGTGSLAGAAAESLMLGFGD 268 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~------~~~~~~~~~~~~~~~~~~~~ 268 (607)
+..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+.. .+....+.....+...+. +
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~-~ 172 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA-L 172 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC-E
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC-e
Confidence 66788999999999999886655542 233334333 24789999999999973 223333444444555666 7
Q ss_pred cEEeecCCCCChHHHHHHhccchH
Q 007334 269 PIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 269 ~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
++++||++|.|++++++.|.+.+.
T Consensus 173 ~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 173 FCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999987653
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-20 Score=179.19 Aligned_cols=158 Identities=22% Similarity=0.205 Sum_probs=113.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++...... ... ++.+.....+...+ ..+.+|||||+.. ....
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~ 92 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDP--TLESTYRHQATIDDEVVSMEILDTAGQED-----------TIQR 92 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCT--TCCEEEEEEEEETTEEEEEEEEECCCCCC-----------CHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCC--CCCceEEEEEEECCEEEEEEEEECCCCCc-----------ccch
Confidence 46899999999999999999998765322 222 22222233344443 5799999999983 2234
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||
T Consensus 93 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 171 (196)
T 2atv_A 93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFYECSA 171 (196)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEEECCT
T ss_pred hhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCC-eEEEECC
Confidence 5678899999999999986555442 233334332 34789999999999987655544555555555666 7899999
Q ss_pred CCCC-ChHHHHHHhccchHH
Q 007334 275 ETGL-GMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~-gi~eL~~~i~~~l~~ 293 (607)
++|. |++++++.|.+.+.+
T Consensus 172 ~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 172 CTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp TTCTTCHHHHHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHHHHHh
Confidence 9999 999999999877654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=175.03 Aligned_cols=159 Identities=18% Similarity=0.139 Sum_probs=112.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|+|++..... ...+. ++.+.....+.+++ ..+.+|||||+. ++....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~ 73 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHT--IGVEFLNKDLEVDGHFVTMQIWDTAGQE----------RFRSLR 73 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCC-----C--CSEEEEEEEEEETTEEEEEEEEECCCCG----------GGHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCc--eeeeEEEEEEEECCEEEEEEEEeCCCch----------hhhhhH
Confidence 4689999999999999999999876431 12222 44555555556665 489999999987 344555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-C----CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-A----PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~----~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
..++..+|++++|+|++++.+..+. .+...+... . .+.|+++|+||+|+.. .....+.....+......++++
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 152 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFE 152 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEE
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc-cccCHHHHHHHHHhcCCceEEE
Confidence 6788999999999999986655442 223333222 1 4789999999999973 3333344444444233347899
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|++++++.|.+.+.
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 153 TSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987654
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-21 Score=183.04 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=117.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++..... ...+. ++.+.....+.+.+ ..+.+|||||+... ...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 74 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYIST--IGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTIT 74 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCS--SCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCc--ccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHH
Confidence 4689999999999999999999876432 12232 45555555555555 47999999998732 2233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+....+.........++ +++++||+
T Consensus 75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 153 (206)
T 2bcg_Y 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLETSAL 153 (206)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEECCTT
T ss_pred HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEeCC
Confidence 4567899999999999986655442 233333333 34789999999999987655544555555556676 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++++.|.+.+.+.
T Consensus 154 ~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 154 DSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887654
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=178.48 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=100.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc-CcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ...+.+.+|+|.+..... . +..+.+|||||+....... ..+.+. ....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWG-RMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHH-HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHH-HHHH
Confidence 45899999999999999999999875 456778888888765433 3 3479999999975442111 011221 1123
Q ss_pred HHHhhc---cEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 401 KNLMRA---HVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 401 ~~i~~a---d~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.++..+ |++++|+|++++ .....++|+++|+||+|+.+........ .++.+.+....+.
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~--------~~~~~~~~~~~~~ 169 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHA--------KVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHH--------HHHHHHHTCCTTS
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHH--------HHHHHHHcccCCC
Confidence 445555 999999999874 1223579999999999998753322111 1222223334567
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCHHHHHHHHHHHh
Confidence 999999999999999999988754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-21 Score=175.95 Aligned_cols=146 Identities=20% Similarity=0.185 Sum_probs=103.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++.. +.||||||..+.. .....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 70 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----------SMRDL 70 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------HHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--cccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH----------HHHHH
Confidence 47999999999999999999997643 2344445555555666677654 7899999964331 12345
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
++..+|++++|+|+++. ... ..++|+++|+||+|+.+..... +.... +.+. .
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~~----~ 138 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA--------LAEE----W 138 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH--------HHHH----H
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH--------HHHH----h
Confidence 67889999999999875 111 1479999999999987543221 11111 1111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++++.+.+.+.+
T Consensus 139 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 139 GCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp TSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 5689999999999999999999887654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=172.96 Aligned_cols=148 Identities=21% Similarity=0.193 Sum_probs=105.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......+ |.......+.+++..+.+|||||+.+... ....+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~~ 71 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIP----TIGFNVETVTYKNLKFQVWDLGGLTSIRP----------YWRCY 71 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCC----CSSEEEEEEEETTEEEEEEEECCCGGGGG----------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCC----cCccceEEEEECCEEEEEEECCCChhhhH----------HHHHH
Confidence 35899999999999999999999775432222 22334456677899999999999754421 11245
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|++++ ... ..++|+++|+||+|+.+.....+ +...+........++
T Consensus 72 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~ 143 (171)
T 1upt_A 72 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE--------MANSLGLPALKDRKW 143 (171)
T ss_dssp CTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH--------HHHHHTGGGCTTSCE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHH--------HHHHhCchhccCCce
Confidence 6789999999999874 111 14789999999999987533211 122222222333456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 144 QIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCcCHHHHHHHHHHHHh
Confidence 8999999999999999999987654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=172.80 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=102.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
++|+++|.+|||||||+|+|++..... ..| |.+.....+.+++..+.||||||+.+.. .....++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~ 66 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIR----------PLWRHYFQ 66 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECSSCEEEEEECCCCGGGH----------HHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEECCEEEEEEEcCCChhhH----------HHHHHHhc
Confidence 489999999999999999999765332 233 2233344566788899999999964321 22345778
Q ss_pred hccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
.+|++++|+|++++ ... ..+.|+++|+||+|+.+..... . +...+........+.++
T Consensus 67 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~----~~~~~~~~~~~~~~~~~ 138 (164)
T 1r8s_A 67 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA----E----ITDKLGLHSLRHRNWYI 138 (164)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH----H----HHHHTTGGGCSSCCEEE
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHH----H----HHHHhCcccccCccEEE
Confidence 99999999999875 111 1378999999999997653211 1 11222222222345689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++||++|.|++++|+.+.+.+.
T Consensus 139 ~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 139 QATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEcccCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999987653
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=181.29 Aligned_cols=160 Identities=15% Similarity=0.101 Sum_probs=113.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++..+ ...... ++.+.....+..++. .+.+|||||+.... ..+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 85 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIP--TAFDNFSAVVSVDGRPVRLQLCDTAGQDEFD----------KLR 85 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC----------C--CSSEEEEEEEEETTEEEEEEEEECCCSTTCS----------SSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCC--cccceeEEEEEECCEEEEEEEEECCCCHHHH----------HHh
Confidence 57899999999999999999998763 333333 555555555566664 67799999997332 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+... +....+........
T Consensus 86 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 165 (201)
T 2q3h_A 86 PLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE 165 (201)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh
Confidence 3467899999999999987665553 244445555568999999999999763 22333444444555
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.+..+++++||++|.|++++++.|.+.+.+
T Consensus 166 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 166 IKAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HTCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 565578999999999999999999877654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=181.69 Aligned_cols=160 Identities=11% Similarity=0.061 Sum_probs=102.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... ++.+.....+...+ ..+.+|||||+. ++....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 99 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTP--TVFERYMVNLQVKGKPVHLHIWDTAGQD----------DYDRLR 99 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC---------CC--CCCEEEEEEEEETTEEEEEEEEEC--------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCC--ccceeEEEEEEECCEEEEEEEEECCCch----------hhhHHH
Confidence 368999999999999999999987642 22222 33344344445554 478999999987 444555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+.... ....++.......
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 179 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS 179 (214)
T ss_dssp -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHh
Confidence 6678999999999999986555542 2444455545678999999999998642 2223333444555
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.+..+++++||++|.|++++++.|.+.+.+
T Consensus 180 ~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 180 VGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 666578999999999999999999876643
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-22 Score=215.93 Aligned_cols=187 Identities=21% Similarity=0.291 Sum_probs=126.8
Q ss_pred CCCCCCccccccccccccCCcccccc-----cccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEE
Q 007334 90 EPEPDGVVEDHKVKPLYEKPVDFTKI-----DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGL 164 (607)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~ 164 (607)
+.+++.+ +.++..+.+++..+... ......+|+|+|+||||||||+|+|++.+.+++.+.++ +|+|.....
T Consensus 191 ~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~g--tT~d~~~~~ 266 (462)
T 3geh_A 191 PLDDEAI--ISDIENIAAEISQLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPG--TTRDVVESQ 266 (462)
T ss_dssp CCCTTTH--HHHHHHHHHHHHHHTTTHHHHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTT--CCHHHHHHE
T ss_pred hhhHHHH--HHHHHHHHHHHHHHHHHhhhhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCC--eeEEEEEEE
Confidence 3344555 55555555555433221 11224579999999999999999999988888888888 999998888
Q ss_pred eeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCC
Q 007334 165 AKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKC 244 (607)
Q Consensus 165 ~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~ 244 (607)
+.+++..+.+|||||+.... +.........+..++..+|++++|+|++++.+..+.++.+.+. ++|+++|+||+
T Consensus 267 i~~~g~~v~liDT~G~~~~~--~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~ 340 (462)
T 3geh_A 267 LVVGGIPVQVLDTAGIRETS--DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKI 340 (462)
T ss_dssp EEETTEEEEECC----------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECT
T ss_pred EEECCEEEEEEECCccccch--hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECC
Confidence 88899999999999996321 1111112344566788999999999999998888766655553 46999999999
Q ss_pred CcccCCcCcHHHHHHHHHhc-CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 245 ESLHNGTGSLAGAAAESLML-GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 245 D~~~~~~~~~~~~~~~~~~~-~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
|+....... ....+ ...+++++||++|.|+++|++.|.+.+.
T Consensus 341 Dl~~~~~~~------~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 341 DLVEKQLIT------SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp TSSCGGGST------TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHT
T ss_pred CCCcchhhH------HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 998653321 00011 2236799999999999999999987664
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=178.25 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=112.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.... ..... ++.+.....+...+ ..+.+|||||+.. +.....
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 71 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRP 71 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--SSCCC--CSCCEEEEEEEETTEEEEEEEECCCCSGG----------GTTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC--CCcCC--cccceeEEEEEECCEEEEEEEEECCCCHh----------HHHHHH
Confidence 58999999999999999999976542 22222 34344334444444 4577999999973 223334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+.... ..............
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence 567899999999999987665553 2455555555589999999999997641 22333334445556
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+..+++++||++|.|++++++.|.+.+.
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 152 GAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 6557899999999999999999987653
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-21 Score=180.60 Aligned_cols=156 Identities=22% Similarity=0.283 Sum_probs=114.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.... ....++ +|.+.....+.+++..+.+|||||+..... ....
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 74 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGG--ITQHIGAYQVTVNDKKITFLDTPGHEAFTT----------MRAR 74 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCS--SSTTCCCCEEEETTEEEEESCCCSSSSSSC----------SCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCc--eeEeeeEEEEEeCCceEEEEECCCCHHHHH----------HHHH
Confidence 579999999999999999999987653 222333 566665566677889999999999874322 1234
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC--------CCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF--------GDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~--------~~~i~ 271 (607)
++..+|++++|+|++++......+.+..+... +.|+++|+||+|+.... .......+...+. .++++
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~--~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAA--NVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGG--SCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhC--CCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEE
Confidence 56789999999999988777776665555544 78999999999997642 1222222222211 15799
Q ss_pred eecCCCCChHHHHHHhccchHH
Q 007334 272 ISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+||++|.|++++++.|.+.+..
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHhhhh
Confidence 9999999999999999877654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-20 Score=175.72 Aligned_cols=153 Identities=27% Similarity=0.421 Sum_probs=113.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|++|||||||+|+|++.. ..++.++++|.+.....+.+++..+.+|||||+.+.......+ .....++
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~----~~~~~~~ 81 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDE----IIARDYI 81 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHH----HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHH----HHHHHHH
Confidence 4799999999999999999999764 6678889999999888899999999999999986652111001 1122333
Q ss_pred h--hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 404 M--RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 404 ~--~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
. .+|++++|+|++.. .....+.|+++|+||+|+..........+.+ .+. .+++++++|
T Consensus 82 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~~~~~~~S 149 (188)
T 2wjg_A 82 INEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKL--------EKI----LGVKVVPLS 149 (188)
T ss_dssp HHHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHH--------HHH----HTSCEEECB
T ss_pred hccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHH--------HHH----hCCCeEEEE
Confidence 3 49999999999875 2234578999999999986432211111111 111 146899999
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~~~ 493 (607)
|++|.|++++|+.+.+.+.+
T Consensus 150 a~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHHHHHHh
Confidence 99999999999999887654
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=176.74 Aligned_cols=154 Identities=17% Similarity=0.185 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.....+....+ .....+.+++..+.+|||||+. .+...+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g------~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 79 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG------FNIKSVQSQGFKLNVWDIGGQR----------KIRPYWRS 79 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT------EEEEEEEETTEEEEEEECSSCG----------GGHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC------eEEEEEEECCEEEEEEECCCCH----------HHHHHHHH
Confidence 5799999999999999999999876544443333 2334455678999999999987 34455667
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 271 (607)
++..+|++++|+|++++.+..+. .+..++... ..+.|+++|+||+|+..... .++...... ..+. ++++
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 156 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVW-QIQS 156 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEEE
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCce-EEEE
Confidence 88999999999999987655542 122222221 24789999999999986532 122111111 1122 5799
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|+++++++|.+.+.
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp CCTTTCTTHHHHHHHHHHTC-
T ss_pred ccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987664
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=189.85 Aligned_cols=158 Identities=22% Similarity=0.300 Sum_probs=115.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|+|.||||||||+|+|++.. ..+++.|| +|.+...+.+.. +..+.+|||||+....+.. . ....+..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~-~---~e~v~~~ 74 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS-P---EAKVARD 74 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSS-H---HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCC-h---HHHHHHH
Confidence 4689999999999999999999875 34777887 888888887776 8899999999998543321 1 1122334
Q ss_pred Hhh--ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLA--KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~--~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++. .+|++++|+|+++. .....+...+.+. +.|+++|+||+|+........ ........++. +++++||++|
T Consensus 75 ~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~-~vi~~SA~~g 148 (272)
T 3b1v_A 75 YLLSQRADSILNVVDATNL--ERNLYLTTQLIET--GIPVTIALNMIDVLDGQGKKI-NVDKLSYHLGV-PVVATSALKQ 148 (272)
T ss_dssp HHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT--CSCEEEEEECHHHHHHTTCCC-CHHHHHHHHTS-CEEECBTTTT
T ss_pred HHhcCCCCEEEEEecCCch--HhHHHHHHHHHhc--CCCEEEEEEChhhCCcCCcHH-HHHHHHHHcCC-CEEEEEccCC
Confidence 444 69999999999863 2223344455554 789999999999875432221 12223344566 7899999999
Q ss_pred CChHHHHHHhccch
Q 007334 278 LGMTELYEALRPSV 291 (607)
Q Consensus 278 ~gi~eL~~~i~~~l 291 (607)
.|+++|++.|.+.+
T Consensus 149 ~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 149 TGVDQVVKKAAHTT 162 (272)
T ss_dssp BSHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999997654
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=179.02 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=107.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.+|||||..+.. .....
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~ 91 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GWLRD 91 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hhhHH
Confidence 35899999999999999999998643 22345677788877777778776 55689999964321 11223
Q ss_pred HHHhhccEEEEEeccchh-----------hHHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++. .... .++|+++|+||+|+.+..... .+.. .++.+. .
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~-----~~~a~~----~ 160 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS--LEEG-----RHLAGT----L 160 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC--HHHH-----HHHHHH----T
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC--HHHH-----HHHHHH----h
Confidence 567789999999999875 1111 378999999999997643221 1111 111111 2
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 161 ~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 161 SCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887643
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-21 Score=206.01 Aligned_cols=154 Identities=29% Similarity=0.371 Sum_probs=93.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.||||||||+|+|++.+...+++++|||+|.....+.+++..+.||||||+.+.. ...+.+.+..+..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~--~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG--EEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC----------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch--hHHHHHHHHHHHhh
Confidence 3589999999999999999999998778899999999999999999999999999999986642 12234444556677
Q ss_pred HhhccEEEEEeccchhh----------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 403 LMRAHVVALVLDAEEVR----------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+..||++|+|+|++++. . ...++|+|+|+||+|+.+..... . +++.+. ...+++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~--~--------~~l~~~----~~~~~i 375 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADAL--I--------RAIADG----TGTEVI 375 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHH--H--------HHHHHH----HTSCEE
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchh--H--------HHHHhc----CCCceE
Confidence 88999999999998751 1 11378999999999998653211 0 111111 125899
Q ss_pred EcccCCCCCHHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++||++|.|++++++.+.+.+.
T Consensus 376 ~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 376 GISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ECBTTTTBSHHHHHHHHTHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999988876
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-21 Score=183.77 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=87.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC----eeEEEecCCCCccccCchhHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD----LRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
..+|+|+|.+|||||||+|+|++........... ++..+.....+.+.+ ..+.+|||||+. ++..
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~ 88 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAM-TSGVEVVVAPVTIPDTTVSVELFLLDTAGSD----------LYKE 88 (208)
T ss_dssp EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTH----------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCC-ccceEEEEEEEEECCcccEEEEEEEECCCcH----------HHHH
Confidence 4689999999999999999999873222333332 122355556666664 589999999997 5556
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhC----CCCcEEEEecCCCccc-CCcCcHHHHHHHHHhcCCCCc
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHA----PQIKPIVAMNKCESLH-NGTGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~----~~~p~ilV~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~ 269 (607)
.+..++..+|++++|+|++++.+.... .+...+.... .+.|+++|+||+|+.. .+....+.....+..++. ++
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~-~~ 167 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTL-DF 167 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTC-EE
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCC-EE
Confidence 677788999999999999986654442 2333333332 4789999999999987 554544555555666776 78
Q ss_pred EEeecCC-CCChHHHHHHhccchHHH
Q 007334 270 IAISAET-GLGMTELYEALRPSVEDY 294 (607)
Q Consensus 270 i~iSA~~-g~gi~eL~~~i~~~l~~~ 294 (607)
+++||++ |.|++++++.|.+.+.+.
T Consensus 168 ~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 168 FDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp EECCC-------CHHHHHHHHHHHHH
T ss_pred EEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999 999999999998877654
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-21 Score=177.01 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=107.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||+|+|++.... ... .|.+.....+...+..+.+|||||+. ++...+..++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~--~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 65 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV--TTI----PTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF 65 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS--CCC----CCSSCCEEEEECSSCEEEEEECCCCG----------GGHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC--ccc----CcCceeEEEEEECCEEEEEEEcCCCh----------hhHHHHHHHh
Confidence 7999999999999999999987642 222 23334455666788999999999997 3445566789
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-----cCCCCcEE
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LGFGDPIA 271 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 271 (607)
..+|++++|+|++++.+... +..|+... ..+.|+++|+||+|+..... .......... .++ ++++
T Consensus 66 ~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 140 (164)
T 1r8s_A 66 QNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNW-YIQA 140 (164)
T ss_dssp TTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCE-EEEE
T ss_pred ccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccE-EEEE
Confidence 99999999999998755544 22333322 24789999999999976422 1211111111 122 4789
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|++++++.|.+.+.
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC-
T ss_pred cccCCCcCHHHHHHHHHHHHh
Confidence 999999999999999987654
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=177.24 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=112.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.. ......+++|.+.....+.+++..+.||||||+.+..... ..+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------~~~ 75 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR----------ARG 75 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC----------CSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH----------HHH
Confidence 35799999999999999999999764 4455667777777666778899999999999976553211 134
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC--CCEE
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG--IPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v 470 (607)
+..+|++++|+|++++ .....++|+++|+||+|+.+.. ..+ +...+ .+ ...+....+ .+++
T Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~----~~~~~-~~-~~~~~~~~~~~~~~~ 148 (178)
T 2lkc_A 76 AQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDR----VMQEL-ME-YNLVPEEWGGDTIFC 148 (178)
T ss_dssp CCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHH----HHHHH-TT-TTCCBTTTTSSEEEE
T ss_pred HhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHH----HHHHH-Hh-cCcChhHcCCcccEE
Confidence 5679999999999873 2224589999999999997642 111 11111 00 011111222 5899
Q ss_pred EcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
++||++|.|++++|+.+.+.+..+..
T Consensus 149 ~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 149 KLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp ECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred EEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 99999999999999999988776544
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=176.51 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=105.8
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceee--cCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLV--GPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~--~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
....+|+++|.+|||||||+|+|++.....+ .++.|. ....+...+..+.||||||+.+.... .
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~ 80 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY----NVETFEKGRVAFTVFDMGGAKKFRGL----------W 80 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE----EEEEEEETTEEEEEEEECCSGGGGGG----------G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce----eEEEEEeCCEEEEEEECCCCHhHHHH----------H
Confidence 3457999999999999999999998764443 333343 23345678889999999997554211 1
Q ss_pred HHHHhhccEEEEEeccchh-----------hHHh-----------cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 400 RKNLMRAHVVALVLDAEEV-----------RAVE-----------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~-----------~~~~-----------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
..+++.+|++|+|+|+++. .... .++|+|+|+||+|+.+.....+..+ .+...
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~----~~~~~- 155 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVE----ILDLT- 155 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHH----HHTHH-
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHH----Hhcch-
Confidence 2456789999999999875 1111 1889999999999987643222211 11111
Q ss_pred HhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 458 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
.+....+++++++||++|.|++++|+.|.+.+.+...
T Consensus 156 --~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 156 --TLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp --HHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred --hhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 0112246789999999999999999999988765543
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=175.40 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=107.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.... ..... ++.+.....+...+ ..+.+|||||+. ++...+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 87 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDP--TIEDSYRKQVVIDGETCLLDILDTAGQE----------EYSAMRD 87 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCC-------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCc--cccCC--ccceEEEEEEEECCEEEEEEEEECCChH----------HHHHHHH
Confidence 68999999999999999999987542 22233 44444444555555 458999999987 4445566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+... ....+.........++ +++++||+
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~ 165 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVDTKQAHELAKSYGI-PFIETSAK 165 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcc-cCCHHHHHHHHHHcCC-eEEEEeCC
Confidence 788999999999999886554442 233333332 237899999999999763 3334444445556676 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 166 ~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 166 TRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-21 Score=179.38 Aligned_cols=148 Identities=20% Similarity=0.219 Sum_probs=104.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.||||||+.+.... ...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~ 73 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF----------PQT 73 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----------CGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH----------HHH
Confidence 5799999999999999999999664 3455566666666666777774 5679999997655211 113
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..++|+++|+||+|+.+...... +.. .++.+ ..+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~ 142 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISY--EEG-----KALAE----SWN 142 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCH--HHH-----HHHHH----HTT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecH--HHH-----HHHHH----HhC
Confidence 55689999999999875 111 23789999999999975433211 111 11111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+...
T Consensus 143 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 143 AAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp CEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999998876543
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=173.86 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=109.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..+... .+ ++.+.....+..++ ..+.+|||||++. .
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~~--~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------~ 67 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQVL--EK---TESEQYKKEMLVDGQTHLVLIREEAGAPD---------------A 67 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCCC--SS---CSSSEEEEEEEETTEEEEEEEEECSSSCC---------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCc--CC---CcceeEEEEEEECCEEEEEEEEECCCCch---------------h
Confidence 5899999999999999999998775431 22 22233334444554 5689999999872 2
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh----CCCCcEEEEecCCCcc--cCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH----APQIKPIVAMNKCESL--HNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~----~~~~p~ilV~NK~D~~--~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
.++..+|++++|+|++++.+..+.. +.+|+... .++.|+++|+||+|+. ..+....+.....+...+..++++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 4567899999999999876665532 44455543 2478999999999995 233333444444444443227899
Q ss_pred eecCCCCChHHHHHHhccchHHH
Q 007334 272 ISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
+||++|.|++++++.|.+.+...
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999998877543
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.3e-21 Score=184.14 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|.+|||||||+|+|++....++..+++++.+.....+.+++.. +.+|||+|.... .. ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~--------~~-~l~~ 106 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE--------NE-WLHD 106 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH--------HH-HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch--------hh-hHHH
Confidence 358999999999999999999997655455666667777777777788765 568999995321 11 1122
Q ss_pred HHHhhccEEEEEeccchh----------h-HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV----------R-AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----------~-~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|||+++. . .. ..++|+|+|+||+||.+.+.... +.. + .+.. ..
T Consensus 107 ~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~--~e~-~----~~a~----~~ 175 (211)
T 2g3y_A 107 HCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV--SEG-R----ACAV----VF 175 (211)
T ss_dssp CCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH--HHH-H----HHHH----HH
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeH--HHH-H----HHHH----Hc
Confidence 345679999999999874 0 11 13789999999999975422211 100 0 1111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++++||++|.||+++|+.+.+.+.
T Consensus 176 ~~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 176 DCKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999988764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-20 Score=174.55 Aligned_cols=158 Identities=22% Similarity=0.275 Sum_probs=109.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc-CcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-GPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~~ 401 (607)
..++|+++|.+|||||||+|+|++.....+.+.+|+|.+..... .+..+.+|||||+....... ..+.+. .....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~ 97 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWK-RLVED 97 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHH-HHHHH
Confidence 35799999999999999999999987677888889888765332 35578899999964431110 011111 11123
Q ss_pred HHhh---ccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMR---AHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~---ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+++. +|++++|+|++.. .....++|+++|+||+|+.+........+. +.+.+......+
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~--------~~~~~~~~~~~~ 169 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEE--------HRKVFSKYGEYT 169 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHH--------HHHHHHSSCCSC
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHH--------HHHHHhhcCCCc
Confidence 3444 5999999998764 222358999999999999865332222222 222222234579
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 170 ~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 170 IIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC
T ss_pred eEEEecCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999987653
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-21 Score=185.32 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=111.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++........ +. ++.+.....+.+.+ ..+.+|||||+... ...+
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 79 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-ST--IGVEFATRTLEIEGKRIKAQIWDTAGQERY----------RAIT 79 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC---------CCSEEEEEEEETTEEEEEEEECCTTTTTT----------TCCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-Cc--ccceeEEEEEEECCEEEEEEEEECCCccch----------hhhH
Confidence 4689999999999999999999876543322 22 44455555555666 58999999998732 2233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|++++.+..+. .+...+... ..+.|+++|+||+|+...+..........+...+. +++++||+
T Consensus 80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 158 (223)
T 3cpj_B 80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL-LFTETSAL 158 (223)
T ss_dssp GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC-EEEECCCC
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 4567899999999999987655542 233333333 34789999999999987655544555555555665 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 159 ~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 159 NSENVDKAFEELINTIYQ 176 (223)
T ss_dssp -CCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-20 Score=170.90 Aligned_cols=147 Identities=20% Similarity=0.236 Sum_probs=101.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+... ....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----------~~~~ 71 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT----------ITTA 71 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC----------CCHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh----------hHHH
Confidence 4799999999999999999999764 33445566666666666666664 678999999654321 1235
Q ss_pred HHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++.. .. ..++|+++|+||+|+.+.....+....+ .+. .++
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~~ 139 (170)
T 1g16_A 72 YYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL--------AKE----LGI 139 (170)
T ss_dssp HHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHH--------HHH----HTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHH--------HHH----cCC
Confidence 678899999999998751 01 1378999999999995432222211111 111 146
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++|+.+.+.+.+
T Consensus 140 ~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 140 PFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999887654
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=174.89 Aligned_cols=146 Identities=18% Similarity=0.219 Sum_probs=102.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+|+|++.....+.++.|.+. ..+.+++..+.||||||+.+... ....++
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~~~ 81 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRS----------SWNTYY 81 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC----CG----------GGHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCCHhHHH----------HHHHHh
Confidence 5899999999999999999999776555555544332 34567889999999999754421 123567
Q ss_pred hhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++|+|+|+++. ... ..++|+++|+||+|+.+.....+ + .+.+........+++
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~----i----~~~~~~~~~~~~~~~ 153 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE----I----SQFLKLTSIKDHQWH 153 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH----H----HHHHTGGGCCSSCEE
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHH----H----HHHhChhhhcCCCcE
Confidence 889999999999875 111 25789999999999976432111 1 111211111234568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.|++++++.+.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEccCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999988765
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-20 Score=184.00 Aligned_cols=160 Identities=11% Similarity=0.060 Sum_probs=117.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+. ..... ++.+.....+.. ....+.+|||||+.. +...+
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 92 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVP--TVFENYTACLETEEQRVELSLWDTSGSPY----------YDNVR 92 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCC--CSEEEEEEEEEC--CEEEEEEEEECCSGG----------GTTTG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCC--eeeeeEEEEEEECCEEEEEEEEECCCCHh----------HHHHH
Confidence 478999999999999999999987652 22222 222222233333 346799999999872 33344
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH--HHHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++|+|+|++++.+..+ ..+...+....++.|+++|+||+|+..+ +....+.....+..
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 172 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ 172 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH
Confidence 557889999999999998766665 2355556555668999999999999763 33445555566667
Q ss_pred cCCCCcEEeecCCCCC-hHHHHHHhccchHH
Q 007334 264 LGFGDPIAISAETGLG-MTELYEALRPSVED 293 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~g-i~eL~~~i~~~l~~ 293 (607)
.++..++++||++|.| ++++++.|.+.+..
T Consensus 173 ~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 173 LGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 7766789999999998 99999999876643
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=176.13 Aligned_cols=161 Identities=17% Similarity=0.204 Sum_probs=105.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.++|+++|.+|||||||+|+|++..... ...+. ++.+.....+.+. ...+.+|||||+. ++...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 74 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKAT--IGADFLTKEVTVDGDKVATMQVWDTAGQE----------RFQSL 74 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCT-TC-----CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCc--cceEEEEEEEEEcCCcEEEEEEEECCCCh----------Hhhhh
Confidence 4789999999999999999999876431 11222 4445555555544 3579999999977 34455
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-----CCCCcEEEEecCCCcccCC-cCcHHHHHHHHHhcCCCCc
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-----APQIKPIVAMNKCESLHNG-TGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~-~~~~~~~~~~~~~~~~~~~ 269 (607)
+..++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+.... ..............+..++
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 75 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 56678999999999999986554442 222222221 1478999999999996432 2233333333332333478
Q ss_pred EEeecCCCCChHHHHHHhccchHH
Q 007334 270 IAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++||++|.|++++++.|.+.+.+
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999876643
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=180.92 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=107.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+.. ....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 93 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR----------SITQ 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH----------HHHG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH----------HHHH
Confidence 35899999999999999999999764 33445556667777677777775 67899999964331 1234
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. . ...++|+++|+||+|+.+..... +.... +.+ ..
T Consensus 94 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~--------~~~----~~ 161 (201)
T 2ew1_A 94 SYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEE--------FSE----AQ 161 (201)
T ss_dssp GGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHH--------HHH----HH
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH--------HHH----Hc
Confidence 5677899999999998751 0 12478999999999997543221 11111 111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 162 DMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999887654
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=177.17 Aligned_cols=149 Identities=21% Similarity=0.275 Sum_probs=103.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++. .+.||||||..+.. ....
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 93 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN----------SITS 93 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH----------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH----------HHHH
Confidence 358999999999999999999997643 2334455556666666777764 67899999964331 2245
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +.. .++.+ ...+
T Consensus 94 ~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~--~~~-----~~~~~---~~~~ 163 (192)
T 2il1_A 94 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITR--QQG-----EKFAQ---QITG 163 (192)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHH-----HHHHH---TSTT
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHH-----HHHHH---hcCC
Confidence 6778999999999998761 11 13789999999999975432211 111 11111 1236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++|+.|.+.+.
T Consensus 164 ~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 164 MRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999987654
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=172.62 Aligned_cols=146 Identities=23% Similarity=0.224 Sum_probs=103.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.||||||..+.. .....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 71 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----------AIRDN 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH----------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc--cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH----------HHHHH
Confidence 4799999999999999999999864 3445556666666666667665 67899999964331 22345
Q ss_pred HHhhccEEEEEeccchhh-----------H--Hh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A--VE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~--~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++.. . .. .++|+++|+||+|+.+..... .+...+ +.+. .+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~-----~~~~----~~ 140 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKN-----RADQ----WN 140 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC--HHHHHH-----HHHH----HT
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC--HHHHHH-----HHHH----cC
Confidence 678899999999998751 1 11 378999999999997543211 111111 1111 14
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 141 VNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987653
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=178.21 Aligned_cols=162 Identities=19% Similarity=0.178 Sum_probs=110.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|||++|||||||+|+|++....++...+. ++.+.....+.+++. .+.+|||+|.... .....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~---------~~~~~ 74 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV--LGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLH 74 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GG--GCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc--cceeEEEEEEEECCeEEEEEEEEeccCcch---------hhhHH
Confidence 3689999999999999999999765444443333 445554555556664 5678999998631 11122
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|+++..+.... .+...+.+. ..+.|+++|+||+|+...+..............+. +++++||
T Consensus 75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~-~~~e~SA 153 (192)
T 2cjw_A 75 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX-KFIETSA 153 (192)
T ss_dssp GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBT
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC-ceEEecc
Confidence 3456789999999999986665542 233444443 24789999999999986555444443334444555 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+..
T Consensus 154 ~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 154 AVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHh
Confidence 9999999999999887643
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=176.22 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=107.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||+.+.. ....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 77 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR----------SVTR 77 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH----------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH----------HHHH
Confidence 35899999999999999999999764 3334456666676666777777 478899999964331 2234
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++..+|++|+|+|+++.. ....++|+++|+||+|+.+...... .... .+.. ..+
T Consensus 78 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~-----~~~~----~~~ 146 (186)
T 2bme_A 78 SYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF--LEAS-----RFAQ----ENE 146 (186)
T ss_dssp TTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HHHH-----HHHH----HTT
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HHHH-----HHHH----HcC
Confidence 5678899999999998751 0125789999999999965322211 1110 1111 135
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+.+.+.+
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 147 LMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999877643
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=178.85 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=110.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..++|+|+|.+|||||||+|+|++.....+...+ |.......+...+..+.+|||||+. ++...+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 81 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA----TVGYNVETFEKGRVAFTVFDMGGAK----------KFRGLWE 81 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC----CSSEEEEEEEETTEEEEEEEECCSG----------GGGGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccc----ccceeEEEEEeCCEEEEEEECCCCH----------hHHHHHH
Confidence 3579999999999999999999998765432122 2234445566788999999999997 2333445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh--C------CCCcEEEEecCCCcccCCcCcH-HHHH--HHH-Hhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH--A------PQIKPIVAMNKCESLHNGTGSL-AGAA--AES-LML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~--~------~~~p~ilV~NK~D~~~~~~~~~-~~~~--~~~-~~~ 264 (607)
.++..+|++|+|+|++++.+.... .+..++... . .+.|+++|+||+|+........ .... ..+ ...
T Consensus 82 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDH 161 (199)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTS
T ss_pred HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCC
Confidence 678899999999999987665542 222332221 0 2789999999999987532111 1111 111 223
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++ .++++||++|.|++++++.|.+.+.+
T Consensus 162 ~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 162 PF-VIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp CE-EEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred ee-EEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 33 67999999999999999999987765
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-20 Score=178.84 Aligned_cols=149 Identities=19% Similarity=0.158 Sum_probs=102.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+.. ....
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~ 96 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA-FSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR----------TITQ 96 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC-C----------CEEEEEEEETTEEEEEEEECCTTCGGGH----------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC-CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH----------HHHH
Confidence 45899999999999999999999764 2223344445566666777777 478899999964331 2245
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... .+... ++.+. .+
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~-----~~~~~----~~ 165 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS--LAEAQ-----SLAEH----YD 165 (201)
T ss_dssp HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHH-----HHHHH----TT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC--HHHHH-----HHHHH----cC
Confidence 6788999999999998751 11 1468999999999997532211 11111 11111 24
Q ss_pred C-CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 I-PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~-~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+ +++++||++|.|++++|+.|.+.+.+
T Consensus 166 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 166 ILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5 89999999999999999999887654
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-20 Score=172.81 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=96.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+|+|++..... ...+.++.+.....+.+++. .+.+|||||..+... .....+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~ 72 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG---------WLQDHC 72 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-----------------CHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch---------hhhhhh
Confidence 689999999999999999999754332 33344566777777777775 566999999754321 112235
Q ss_pred HhhccEEEEEeccchh-----------hHHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. .... .++|+++|+||+|+.+...... +.. ..+.+ ..++
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 141 (169)
T 3q85_A 73 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSL--EEG-----RHLAG----TLSC 141 (169)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCH--HHH-----HHHHH----HTTC
T ss_pred hccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCH--HHH-----HHHHH----HcCC
Confidence 6679999999999875 1111 2789999999999975432211 111 11111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++|+.+.+.+..
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 142 KHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cEEEecCccCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999887643
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=181.12 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=110.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|||||||+|+|++...... ... ++.+.....+...+ ..+.+|||||+... ...+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 91 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV--YVP--TVFENYVADIEVDGKQVELALWDTAGQEDY----------DRLRP 91 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTC----------TTTGG
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc--CCC--cccceEEEEEEECCEEEEEEEEECCCcHHH----------HHHHH
Confidence 5899999999999999999998765322 111 33333333344555 57899999998732 22334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|++++.+.... .+...+....++.|+++|+||+|+... +....+.........
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence 567899999999999886554442 355556555568999999999999764 122233334444455
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+..+++++||++|.|++++++.|.+.+.
T Consensus 172 ~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 172 QAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 6557899999999999999999987653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-21 Score=183.29 Aligned_cols=157 Identities=12% Similarity=0.131 Sum_probs=113.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||+|+|++..... .... ++.+........ .+..+.+|||||+.... ..+
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 89 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSE--GYDP--TVENTYSKIVTLGKDEFHLHLVDTAGQDEYS----------ILP 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS--CCCC--CSEEEEEEEEC----CEEEEEEEECCCCTTC----------CCC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCC--CCCC--ccceEEEEEEEECCEEEEEEEEECCCccchH----------HHH
Confidence 4789999999999999999999876542 2222 333332333333 45678999999987322 233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..++..+|++++|+|++++.+... +..|+... ..+.|+++|+||+|+...+..............+. +++++
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~ 166 (201)
T 3oes_A 90 YSFIIGVHGYVLVYSVTSLHSFQV--IESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFMES 166 (201)
T ss_dssp GGGTTTCCEEEEEEETTCHHHHHH--HHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred HHHHhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEEEE
Confidence 456789999999999997655444 33444332 23689999999999987666555555556666676 78999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.|.+.+.+
T Consensus 167 Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 167 SARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999887754
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.5e-21 Score=176.26 Aligned_cols=154 Identities=19% Similarity=0.164 Sum_probs=109.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.... ... .|.+.....+.+.+..+.+|||||+.. +...+..
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~----~t~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~~ 70 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV--TTI----PTIGFNVETVTYKNLKFQVWDLGGLTS----------IRPYWRC 70 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC--CCC----CCSSEEEEEEEETTEEEEEEEECCCGG----------GGGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--CcC----CcCccceEEEEECCEEEEEEECCCChh----------hhHHHHH
Confidence 468999999999999999999987642 212 233445566677889999999999872 2233456
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHH-----HhcCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAES-----LMLGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~i~ 271 (607)
++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+..... ..+..... ...++ ++++
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 147 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKW-QIFK 147 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCE-EEEE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCce-EEEE
Confidence 77899999999999988766542 222333221 24789999999999976532 11111111 11223 5799
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|++++++.|.+.+.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 148 TSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999987664
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-20 Score=175.88 Aligned_cols=155 Identities=18% Similarity=0.121 Sum_probs=107.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++........ |.+.....+.+++..+.+|||||+. ++...+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~------t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 78 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP------TIGSNVEEIVINNTRFLMWDIGGQE----------SLRSSWN 78 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC------CSCSSCEEEEETTEEEEEEECCC--------------CGGGH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcC------CCccceEEEEECCEEEEEEECCCCH----------hHHHHHH
Confidence 35789999999999999999999776543322 2223334555678999999999997 3333445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HH-HHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VG-KWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~-~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i 270 (607)
.++..+|++++|+|++++.+..... +. ..+... ..+.|+++|+||+|+..... .++...... ..++ +++
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~-~~~ 155 (187)
T 1zj6_A 79 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQW-HIQ 155 (187)
T ss_dssp HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCE-EEE
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhhcCCCc-EEE
Confidence 6789999999999999987666522 22 222211 24789999999999976322 222222221 1222 679
Q ss_pred EeecCCCCChHHHHHHhccchH
Q 007334 271 AISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
++||++|.|+++++++|.+.+.
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHC
T ss_pred EccCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999987664
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=172.80 Aligned_cols=149 Identities=22% Similarity=0.213 Sum_probs=107.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+++++.+.....+.+++. .+.||||||+.+.. ....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 84 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----------AIRD 84 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH----------HHHH
Confidence 35899999999999999999999764 3445666666666666677765 67899999964431 2234
Q ss_pred HHHhhccEEEEEeccchhh-------------HHh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-------------AVE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-------------~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++++|+|+++.. ... .++|+++|+||+|+.+..... .+... ++.+ ..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~-----~~~~----~~ 153 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAK-----NRAE----QW 153 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC--HHHHH-----HHHH----HT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC--HHHHH-----HHHH----Hc
Confidence 5778899999999998751 111 278999999999997543211 11111 1111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
+++++++||++|.|++++|+.|.+.+.+.
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 154 NVNYVETSAKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp TCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999998876543
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-20 Score=179.47 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=111.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++....... .+. ++.+.. ..+..++ ..+.+|||||+.. +....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t--~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 90 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVY-VPT--VFENYI-ADIEVDGKQVELALWDTAGQED----------YDRLR 90 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSC-CCS--SCCCCE-EEEEETTEEEEEEEECCCCSGG----------GTTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCccc-CCc--ccceEE-EEEEECCEEEEEEEEECCCchh----------HHHHH
Confidence 358999999999999999999987653211 121 222222 2344444 4789999999872 22333
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+... +....++....+..
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 170 (201)
T 2gco_A 91 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR 170 (201)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh
Confidence 4568899999999999986555543 355555555568999999999999864 22333344444555
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
.+...++++||++|.|++++++.|.+.+
T Consensus 171 ~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 171 ISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 6665689999999999999999987654
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=174.96 Aligned_cols=148 Identities=20% Similarity=0.223 Sum_probs=107.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||+.+... ...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~ 87 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT----------ITT 87 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC----------CCH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH----------HHH
Confidence 35899999999999999999999764 4445566777777777778887 5788999999654421 123
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++..+|++|+|+|+++.. .. ..++|+++|+||+|+.......+....+ ... .+
T Consensus 88 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~ 155 (213)
T 3cph_A 88 AYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEAL--------AKE----LG 155 (213)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHH--------HHH----HT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHH--------HHH----cC
Confidence 5678899999999998751 11 1378999999999995332221111111 111 14
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.|.+.+.+
T Consensus 156 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 156 IPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp CCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998876543
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-20 Score=180.69 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=105.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++...... . .|.+.....+...+..+.+|||||++ ++...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~----~t~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~ 92 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIVTT--I----PTIGFNVETVEYKNICFTVWDVGGQD----------KIRPLWRH 92 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCEEE--E----EETTEEEEEEEETTEEEEEEECC---------------CTTHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcccc--C----CcCceeEEEEEECCEEEEEEECCCCH----------hHHHHHHH
Confidence 47899999999999999999998765321 1 34445556677788999999999997 33344556
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-----cCCCCc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LGFGDP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~ 269 (607)
++..+|++++|+|++++.+... +..|+... ..+.|+++|+||+|+..... ..+....... .++ ++
T Consensus 93 ~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~-~~ 167 (192)
T 2b6h_A 93 YFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTW-YV 167 (192)
T ss_dssp HHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCE-EE
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCce-EE
Confidence 7899999999999998765554 22333322 24789999999999976422 1221111111 112 47
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|.|++++++.|.+.+.
T Consensus 168 ~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 168 QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EECBTTTTBTHHHHHHHHHHHTT
T ss_pred EECcCCCcCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-21 Score=180.44 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=104.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... ++.+.....+... ...+.+|||||+.. +...+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 73 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVP--TVFDNFSANVVVNGATVNLGLWDTAGQED----------YNRLR 73 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CT----------TTTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCC--eeeeeEEEEEEECCEEEEEEEEECCCChh----------hhhhH
Confidence 478999999999999999999987642 22222 3332222222223 34677999999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCcC----------cHHHHHHHHHhcC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGTG----------SLAGAAAESLMLG 265 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~----------~~~~~~~~~~~~~ 265 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+...... ...+........+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 153 (182)
T 3bwd_D 74 PLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG 153 (182)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC
Confidence 4567899999999999886655543 244555554557999999999999764321 2333344445556
Q ss_pred CCCcEEeecCCCCChHHHHHHhccch
Q 007334 266 FGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
..+++++||++|.|++++++.|.+.+
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 154 APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 55789999999999999999987654
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-20 Score=173.92 Aligned_cols=147 Identities=22% Similarity=0.238 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEE--EEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTV--YLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~--~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+.+++.+.....+..++..+ .+|||||..+... ...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~ 84 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----------MRE 84 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS----------SHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH----------HHH
Confidence 35899999999999999999999763 334444555555566667777654 4699999654321 123
Q ss_pred HHHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++++|+|+++. .. ...++|+++|+||+|+.+...... +.. . ++.+. .
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~--~~~-~----~~~~~----~ 153 (183)
T 3kkq_A 85 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTR--DQG-K----EMATK----Y 153 (183)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCH--HHH-H----HHHHH----H
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCH--HHH-H----HHHHH----h
Confidence 567789999999999875 11 125789999999999976432211 111 1 11111 1
Q ss_pred CCCEEEcccC-CCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSAL-EGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~-~g~gv~~l~~~i~~~~~ 492 (607)
+++++++||+ +|.|++++|+.+.+.+.
T Consensus 154 ~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 154 NIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp TCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred CCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 4789999999 99999999999988764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-20 Score=174.48 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=101.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++....... | |.+.....+.+++..+.||||||..+.. .....+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~--~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 93 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNICFTVWDVGGQDKIR----------PLWRHY 93 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEE--E--ETTEEEEEEEETTEEEEEEECC-----C----------TTHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccC--C--cCceeEEEEEECCEEEEEEECCCCHhHH----------HHHHHH
Confidence 4589999999999999999999976543322 2 3334445677788999999999975432 112356
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|++++ ... ..++|+++|+||+|+.+.... +. +...+........+.
T Consensus 94 ~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~----i~~~~~~~~~~~~~~ 165 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPV----SE----LTDKLGLQHLRSRTW 165 (192)
T ss_dssp HHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH----HH----HHHHTTGGGCSSCCE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCH----HH----HHHHhCcccccCCce
Confidence 7899999999999875 111 137899999999999765321 11 112222222333456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.+.+.+
T Consensus 166 ~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 166 YVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHT
T ss_pred EEEECcCCCcCCHHHHHHHHHHHH
Confidence 899999999999999999988754
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=176.42 Aligned_cols=146 Identities=22% Similarity=0.210 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC---eEEEEEecCCCcccccccCcchhHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG---RTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.||||||..+.. ...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~ 73 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG----------KML 73 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC----------TTH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc----------chh
Confidence 358999999999999999999997642 222234445666667777776 688999999965432 112
Q ss_pred HHHHhhccEEEEEeccchhh----------HHh------cCCc-EEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhC
Q 007334 400 RKNLMRAHVVALVLDAEEVR----------AVE------EGRG-LVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVI 461 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~----------~~~------~~~p-~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~ 461 (607)
..+++.+|++++|+|+++.. ... .+.| +++|+||+|+.+..... +....+ .+.
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~--------~~~- 144 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRF--------CQE- 144 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHH--------HHH-
T ss_pred hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHH--------HHH-
Confidence 45678999999999998750 111 2566 89999999997542211 111111 111
Q ss_pred CCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 462 PQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 462 ~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+++++++||++|.|++++|+.+.+.+
T Consensus 145 ---~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 145 ---NGFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp ---HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 256899999999999999999988765
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=169.24 Aligned_cols=156 Identities=18% Similarity=0.197 Sum_probs=109.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.... ..... ++.+.....+...+ ..+.+|||||+.. +.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~ 69 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDP--TIEDSYRKQVVIDGETCLLDILDTAGQEE----------YSAMRD 69 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCCCSS----------CCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCC--ccceEEEEEEEECCEEEEEEEEECCCchh----------hhHHHH
Confidence 47999999999999999999987542 22222 33343344444444 4588999999873 223345
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..+ ..+...+... ..+.|+++|+||+|+... ..............++ +++++||+
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~Sa~ 147 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-TVESRQAQDLARSYGI-PYIETSAK 147 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTC-CEEEECTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc-ccCHHHHHHHHHHcCC-eEEEecCC
Confidence 67788999999999987654443 2233333332 237899999999999863 2333444444555676 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.+.
T Consensus 148 ~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 148 TRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987653
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=172.33 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=110.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+... .. .|.+.....+.+++ ..+.+|||||++ ++.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~--~~---~t~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~--- 81 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQE--ES---PEGGRFKKEIVVDGQSYLLLIRDEGGPP----------ELQ--- 81 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCC--CC---TTCEEEEEEEEETTEEEEEEEEECSSSC----------CHH---
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC--cC---CCcceEEEEEEECCEEEEEEEEECCCCh----------hhh---
Confidence 46899999999999999999998765321 11 12233334555666 467889999997 222
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhC--CCCcEEEEecCCCccc--CCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHA--PQIKPIVAMNKCESLH--NGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~--~~~p~ilV~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
++..+|++++|+|++++.+..+ ..+...+.... .+.|+++|+||+|+.. .+....++....+...+...++++
T Consensus 82 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 82 --FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred --eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEe
Confidence 6788999999999998766555 22333343321 4689999999999952 333445555556666663478999
Q ss_pred ecCCCCChHHHHHHhccchHH
Q 007334 273 SAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~~ 293 (607)
||++|.|++++++.|.+.+.+
T Consensus 160 Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876644
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-21 Score=179.16 Aligned_cols=146 Identities=18% Similarity=0.143 Sum_probs=84.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+... ....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 76 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------ITTA 76 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh----------hHHH
Confidence 5899999999999999999999653 4444556677777766777777 5788999999754421 1124
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCc-hHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQN-SALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|++++. .. ..++|+++|+||+|+.+.... .+....+ .+. .+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--------~~~----~~ 144 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKL--------ALD----YG 144 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHH--------HHH----HT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHH--------HHH----cC
Confidence 567899999999998751 11 137899999999999764322 1111111 111 25
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 145 ~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 145 IKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987664
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-20 Score=173.45 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=105.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......++.+ .....+.+++..+.+|||||+.+..... ..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~~~----------~~~ 86 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG----VNLETLQYKNISFEVWDLGGQTGVRPYW----------RCY 86 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT----CCEEEEEETTEEEEEEEECCSSSSCCCC----------SSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc----eEEEEEEECCEEEEEEECCCCHhHHHHH----------HHH
Confidence 35899999999999999999998776544444333 2234566788999999999986543211 134
Q ss_pred HhhccEEEEEeccchh-----------hHHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|++++ .... .++|+++|+||+|+.+..... . +...+........++
T Consensus 87 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~----~~~~~~~~~~~~~~~ 158 (189)
T 2x77_A 87 FSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEA----E----IAEQLGVSSIMNRTW 158 (189)
T ss_dssp STTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHH----H----HHHHTTGGGCCSSCE
T ss_pred hhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHH----H----HHHHhChhhccCCce
Confidence 5689999999999865 1111 378999999999997653221 1 112222222233456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++++.+.+.+.+
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 159 TIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEccCCCccCHHHHHHHHHHHHHh
Confidence 89999999999999999999887654
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-20 Score=176.95 Aligned_cols=148 Identities=22% Similarity=0.217 Sum_probs=107.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+++++.+.....+.+++. .+.||||||..+.. ....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 80 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----------AIRD 80 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH----------HHHH
Confidence 35899999999999999999999774 3456667777766667777775 67899999964431 1234
Q ss_pred HHHhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++++|+|+++.. .. ..++|+++|+||+|+.+..... .+...+ +.+. .
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~-----~~~~----~ 149 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS--VEEAKN-----RAEQ----W 149 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC--HHHHHH-----HHHH----H
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc--HHHHHH-----HHHH----h
Confidence 5677899999999998751 11 1378999999999997643211 111111 1111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 150 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 150 NVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887654
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=171.66 Aligned_cols=148 Identities=15% Similarity=0.148 Sum_probs=102.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-------------------------------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG------------------------------- 371 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~------------------------------- 371 (607)
..++|+++|.+|||||||+|+|++.. ......+.++.+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT-FHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc-CCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999875 2233334444555555555544
Q ss_pred --------eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhh-----------H-HhcCCcEEEEE
Q 007334 372 --------RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVR-----------A-VEEGRGLVVIV 431 (607)
Q Consensus 372 --------~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~-----------~-~~~~~p~ivv~ 431 (607)
..+.||||||+.+.. ..+..+++.+|++|+|+|++++. . ...++|+++|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~ 154 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYA----------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVA 154 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCT----------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cccCccceeEEEEEECCCcHHHH----------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 678899999964432 12346778999999999998760 1 11358999999
Q ss_pred eCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 432 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
||+|+....... +.+.+ +.+. .+++++++||++|.|++++|+.|.+.+.+
T Consensus 155 NK~D~~~~~~~~---~~~~~-----~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 155 NKIDKNKFQVDI---LEVQK-----YAQD----NNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp ECTTCC-CCSCH---HHHHH-----HHHH----TTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ECCCcccccCCH---HHHHH-----HHHH----cCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 999932221111 11111 1111 25699999999999999999999887654
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-20 Score=177.58 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=107.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+.... ...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~ 76 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI----------TSS 76 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC----------CGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH----------HHH
Confidence 5899999999999999999999764 33344566666666666777765 7889999997654211 124
Q ss_pred HHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++|+|+|++++. .. ..+.|+++|+||+|+.+...... +.. ..+.. ..++
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~~~ 145 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY--DVA-----KEFAD----ANKM 145 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHH-----HHHHH----HTTC
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH--HHH-----HHHHH----HcCC
Confidence 567899999999998751 11 14689999999999986432211 111 11111 1257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
+++++||++|.|++++|+.+.+.+.+.
T Consensus 146 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 146 PFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999998877543
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-20 Score=178.40 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=102.1
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
+..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++ ..+.||||||+.+.. ...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 91 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSH-DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR----------AIT 91 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCS-SCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC----------TTH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh----------hhh
Confidence 345899999999999999999999875332 2223223333333444443 477899999975432 112
Q ss_pred HHHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 400 RKNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
..+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +.. ..+.. ..
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~-----~~~~~----~~ 160 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPT--EEA-----RMFAE----NN 160 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCH--HHH-----HHHHH----HT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCH--HHH-----HHHHH----Hc
Confidence 35678999999999998751 11 13789999999999975432111 111 11111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.|.+.+.+
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 161 GLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999876643
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.8e-20 Score=170.82 Aligned_cols=147 Identities=17% Similarity=0.193 Sum_probs=103.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+.. .....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~ 75 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR----------SLRTP 75 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH----------HHHGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh----------hhHHH
Confidence 5899999999999999999999764 33444555666666667777774 78899999964331 12235
Q ss_pred HHhhccEEEEEeccchhh--------------HHh----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 402 NLMRAHVVALVLDAEEVR--------------AVE----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~--------------~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
++..+|++++|+|+++.. ... .++|+++|+||+|+.+.....+.... +.+ .
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~--------~~~---~ 144 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA--------WCR---D 144 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHH--------HHH---H
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHH--------HHH---h
Confidence 677899999999998751 011 57899999999999743221111111 111 1
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+.+++++||++|.|++++|+.+.+.+.
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 145 NGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23678999999999999999999887653
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=176.11 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=110.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+. ..... ++.+........++ ..+.+|||||+.... . .
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~-~ 85 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFI--SEYDP--NLEDTYSSEETVDHQPVHLRVMDTADLDTPR----------N-C 85 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCC---CC----------C-T
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCC--cccCC--CccceeeEEEEECCEEEEEEEEECCCCCcch----------h-H
Confidence 368999999999999999999987642 22222 34333333334443 578899999987322 1 1
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..++..+|++++|+|++++.+..+.. +...+... ..+.|+++|+||+|+...+....++....+...++ +++++
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 164 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC-LFFEV 164 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEEC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-cEEEE
Confidence 34778999999999999765554422 22333322 25789999999999987655555555566666777 78999
Q ss_pred ec-CCCCChHHHHHHhccchH
Q 007334 273 SA-ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 273 SA-~~g~gi~eL~~~i~~~l~ 292 (607)
|| ++|.|++++++.|.+.+.
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHHHh
Confidence 99 899999999999987653
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-20 Score=174.30 Aligned_cols=143 Identities=18% Similarity=0.172 Sum_probs=99.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.++|+++|.+|||||||+|+|++.... ...+..|++.... .+.+++ ..+.+|||||+.+.. ....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~ 73 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK--TVQYQNELHKFLIWDTAGLERFR----------ALAP 73 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGG----------GGTH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE--EEEECCeEEEEEEEcCCCchhhh----------cccH
Confidence 489999999999999999999987522 2344455554433 344444 578899999975432 1123
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++++|+|+++.. .. ....|+++|+||+|+.+..... +... .+... .
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~--------~~~~~----~ 141 (170)
T 1z0j_A 74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK--------DYADS----I 141 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHH--------HHHHH----T
T ss_pred hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHH--------HHHHH----c
Confidence 5678899999999998750 11 2467899999999997643221 1111 11111 2
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.+++++||++|.|++++|+.+.+.
T Consensus 142 ~~~~~~~Sa~~~~~i~~l~~~i~~~ 166 (170)
T 1z0j_A 142 HAIFVETSAKNAININELFIEISRR 166 (170)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHH
Confidence 5689999999999999999998764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=173.33 Aligned_cols=149 Identities=23% Similarity=0.286 Sum_probs=103.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......++.|.+. ..+.+++..+.+|||||+.+.... ...+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 82 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQTSIRPY----------WRCY 82 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC----CCTT----------GGGT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEECCEEEEEEECCCCHhHHHH----------HHHH
Confidence 35899999999999999999999765555555555432 345678899999999997654211 1245
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++. ... ..++|+++|+||+|+.+..... .+ ...+........+.
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~i----~~~~~~~~~~~~~~ 154 (183)
T 1moz_A 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSAS----EV----SKELNLVELKDRSW 154 (183)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHH----HH----HHHTTTTTCCSSCE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHH----HH----HHHhCcccccCCce
Confidence 6789999999999865 111 2578999999999997653211 11 11111111122345
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++++.+.+.+.+
T Consensus 155 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 155 SIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 89999999999999999999887654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-20 Score=170.99 Aligned_cols=146 Identities=21% Similarity=0.169 Sum_probs=101.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.+|||||+.+.. .....
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----------~~~~~ 70 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL 70 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence 47999999999999999999997632 33344455554444555554 367899999965432 12235
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++. ... ..++|+++|+||+|+.+..... .+.. ..+.+. ..+
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~-----~~~~~~---~~~ 140 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG--KEQG-----QNLARQ---WCN 140 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC--HHHH-----HHHHHH---TTS
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC--HHHH-----HHHHHH---ccC
Confidence 67789999999999875 111 1379999999999997543211 1111 111111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+++++||++|.|++++++.+.+.+
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 141 CAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=173.17 Aligned_cols=145 Identities=18% Similarity=0.228 Sum_probs=105.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......++.|++.. .+.+++..+.||||||+.+.... ...+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~ 85 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESLRSS----------WNTY 85 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSSGGGTCG----------GGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCCHhHHHH----------HHHH
Confidence 468999999999999999999998876566666665543 45668899999999997554211 1245
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|+++. ... ..++|+++|+||+|+.+..... .+. +.+........++
T Consensus 86 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~i~----~~~~~~~~~~~~~ 157 (181)
T 2h17_A 86 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVA----EIS----QFLKLTSIKDHQW 157 (181)
T ss_dssp GTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH----HHH----HHTTGGGCCSSCE
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHH----HHH----HHhCcccccCCce
Confidence 6789999999999875 111 2578999999999997643211 111 1111111223456
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.|++++|+.|.+
T Consensus 158 ~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 158 HIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp EEEECBTTTTBTHHHHHHHHHT
T ss_pred EEEEccCCCCcCHHHHHHHHHh
Confidence 8999999999999999998864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=174.72 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=103.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.... ....+.+.. ....+...+..+.||||||..+.. .....+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~--~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~ 87 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMIPTVGF--NMRKITKGNVTIKLWDIGGQPRFR----------SMWERY 87 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSE--EEEEEEETTEEEEEEEECCSHHHH----------TTHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccCCCCce--eEEEEEeCCEEEEEEECCCCHhHH----------HHHHHH
Confidence 3589999999999999999999976532 122222222 223466788899999999964431 113456
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++|+|+|+++. ... ..++|+++|+||+|+.+..... .+ ...+........+.
T Consensus 88 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~~----~~~~~~~~~~~~~~ 159 (188)
T 1zd9_A 88 CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEK----EL----IEKMNLSAIQDREI 159 (188)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHH----HH----HHHTTGGGCCSSCE
T ss_pred HccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHH----HH----HHHhChhhhccCCe
Confidence 7899999999999864 111 2578999999999997653211 11 11222222233467
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 160 ~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 160 CCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999887543
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-20 Score=182.90 Aligned_cols=160 Identities=13% Similarity=0.111 Sum_probs=113.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++..+ ...... ++.+.....+..++ ..+.+|||||++... ..+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 74 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIP--TVFDNFSANVAVDGQIVNLGLWDTAGQEDYS----------RLR 74 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCC--SSCCCEEEEEECSSCEEEEEEECCCCCCCCC----------C--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CccCCC--ccceeEEEEEEECCEEEEEEEEECCCcHHHH----------HHH
Confidence 36899999999999999999998764 222222 34444444444444 589999999997322 233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCc--------CcHHHHHHHHHhcCCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGT--------GSLAGAAAESLMLGFG 267 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~--------~~~~~~~~~~~~~~~~ 267 (607)
..++..+|++|+|+|++++.+..+. .+...+....++.|+++|+||+|+..... ............++..
T Consensus 75 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 154 (212)
T 2j0v_A 75 PLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAA 154 (212)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCS
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCc
Confidence 4578899999999999987655542 34455555456899999999999976432 1233344445556655
Q ss_pred CcEEeecCCCCChHHHHHHhccchHH
Q 007334 268 DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++++||++|.|++++++.|.+.+.+
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 155 AYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred eEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 78999999999999999999877653
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-20 Score=191.54 Aligned_cols=198 Identities=19% Similarity=0.178 Sum_probs=132.3
Q ss_pred cCccCCCCCCCCCCccccccccccccCC-cccccccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeee
Q 007334 82 EALEDTHVEPEPDGVVEDHKVKPLYEKP-VDFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDI 160 (607)
Q Consensus 82 ~g~g~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~ 160 (607)
.|.|+..+....+.. . +....-..- ...-....+.++.|+|||+||||||||+|+|++.+.. +.+.++ +|.+.
T Consensus 122 gG~Gn~~f~~~~~~~--p-~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~f--tTl~p 195 (342)
T 1lnz_A 122 GGRGNSRFATPANPA--P-QLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHF--TTLVP 195 (342)
T ss_dssp CCCCGGGSCBTTBSS--C-CCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCE-ESSTTS--SCCCC
T ss_pred CccCccccccccccc--c-ccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCc--cccCc
Confidence 567788887777666 2 222111110 1111123344689999999999999999999987654 466776 88888
Q ss_pred EEEEeeeCC-eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC---CCCHhHH-HHHHHHHhhC---
Q 007334 161 REGLAKLGD-LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS---GLHPLDL-EVGKWLRKHA--- 232 (607)
Q Consensus 161 ~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~---~~~~~~~-~~~~~l~~~~--- 232 (607)
..+.+.+.+ ..+.+|||||++........ .....+..+..+|++|+|+|+++ .....+. .+...|....
T Consensus 196 ~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~---l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l 272 (342)
T 1lnz_A 196 NLGMVETDDGRSFVMADLPGLIEGAHQGVG---LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRL 272 (342)
T ss_dssp CEEEEECSSSCEEEEEEHHHHHHHTTCTTT---THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSST
T ss_pred eEEEEEeCCCceEEEecCCCCcccccccch---hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhh
Confidence 888888765 88999999998743221111 11223455678999999999987 3333432 2445555432
Q ss_pred CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-CCcEEeecCCCCChHHHHHHhccchH
Q 007334 233 PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 233 ~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.++|+++|+||+|+.... +........+.. .+++++||++++|+++|++.|.+.+.
T Consensus 273 ~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 273 TERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp TTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred cCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 378999999999997532 111222233331 37899999999999999999987764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=175.55 Aligned_cols=156 Identities=13% Similarity=0.083 Sum_probs=110.6
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++... .... .|.......+.+++..+.+|||||+. ++...+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~----~t~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~ 80 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTIS----PTLGFNIKTLEHRGFKLNIWDVGGQK----------SLRSYWR 80 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCC----CCSSEEEEEEEETTEEEEEEEECCSH----------HHHTTGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Cccc----ccCccceEEEEECCEEEEEEECCCCH----------hHHHHHH
Confidence 357899999999999999999998762 2212 23334455666788999999999997 4445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-H-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-E-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i 270 (607)
.++..+|++++|+|++++.+..+. . +...++.. ..+.|+++|+||+|+..... ..+...... ..++ +++
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 157 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHW-RIQ 157 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCce-EEE
Confidence 678999999999999987665542 1 22222221 24789999999999976432 122211111 1122 579
Q ss_pred EeecCCCCChHHHHHHhccchHH
Q 007334 271 AISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++||++|.|++++++.|.+.+.+
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EeeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999887654
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=173.59 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+.+|+.+.....+.+++.. +.||||||..+... ...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~ 89 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE--IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR----------LRP 89 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT----------TGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC--CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH----------HhH
Confidence 46899999999999999999999874 34455556666666666677765 48999999654421 112
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++++|+|+++.. ....++|+++|+||+|+.+........+... ++.+. .+
T Consensus 90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~----~~ 160 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGD-----DLCQK----LG 160 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHH-----HHHHH----HT
T ss_pred hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHH-----HHHHh----cC
Confidence 4567899999999998751 1123689999999999985421111111111 11111 14
Q ss_pred CC-EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IP-VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~-~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++ ++++||++|.|++++|+.+.+.+.
T Consensus 161 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 161 CVAYIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp CSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 45 999999999999999999988654
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-20 Score=172.51 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++.......++.+ .....+.+++..+.+|||||+.+... ....+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~~ 82 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQKSLRS----------YWRNY 82 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCSHHHHT----------TGGGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCCHhHHH----------HHHHH
Confidence 35899999999999999999999875222222222 33445667889999999999754321 11245
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|++++ ... ..++|+++|+||+|+.+..... .+. +.+........++
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~----~~~~~~~~~~~~~ 154 (186)
T 1ksh_A 83 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCN----AIQ----EALELDSIRSHHW 154 (186)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH----HHH----HHTTGGGCCSSCE
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHH----HHH----HHhChhhccCCce
Confidence 6789999999999875 111 1478999999999997653221 111 1111111223456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.|++++++.+.+.+.+
T Consensus 155 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 155 RIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999887653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=173.79 Aligned_cols=147 Identities=21% Similarity=0.224 Sum_probs=101.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ....+.++.+.....+..++ ..+.||||||..+.. ....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 82 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR----------AVTR 82 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC----------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh----------hhHH
Confidence 3589999999999999999999977532 22222233333344455555 477899999954331 2245
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++++|+|+++.. . ...++|+++|+||+|+.+..... .+... ++.+. .+
T Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~-----~~~~~----~~ 151 (179)
T 1z0f_A 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT--YEEAK-----QFAEE----NG 151 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC--HHHHH-----HHHHH----TT
T ss_pred HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC--HHHHH-----HHHHH----cC
Confidence 6788999999999998751 1 11578999999999997543211 11111 11111 25
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++++||++|.|++++|+.+.+.+
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 152 LLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-20 Score=184.59 Aligned_cols=161 Identities=25% Similarity=0.323 Sum_probs=119.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+|+|.+|||||||+|+|++... .++..++ +|.+...+.+.+.+..+.+|||||+....+.... + ..+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~--~~~~~ 75 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPG--VTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID--E--LIARN 75 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTT--SSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH--H--HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCC--eEEEeeEEEEEECCceEEEEeCCCccccccCCHH--H--HHHHH
Confidence 46899999999999999999999876 5777888 8999988889999999999999999854432111 1 12233
Q ss_pred Hh--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VL--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
++ ..+|++++|+|++++ .....+...+.+. ...|+++|+||+|+......... .......++. +++++||++|
T Consensus 76 ~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~-~~~~~Sa~~g 150 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTCL--MRNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGV-PVIPTNAKKG 150 (271)
T ss_dssp HHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSS-CEEECBGGGT
T ss_pred hhhccCCcEEEEEecCCcc--hhhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCC-cEEEEEeCCC
Confidence 33 689999999999874 2223333344443 12899999999998754322111 2223345566 7899999999
Q ss_pred CChHHHHHHhccchH
Q 007334 278 LGMTELYEALRPSVE 292 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~ 292 (607)
.|++++++.|.+.+.
T Consensus 151 ~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 151 EGVEELKRMIALMAE 165 (271)
T ss_dssp BTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987654
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-20 Score=184.03 Aligned_cols=160 Identities=20% Similarity=0.140 Sum_probs=107.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee-ccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV-YNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v-~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
..+|+|+|.+|||||||+|+|++...... ....+ ++...... ....+ ..+.+|||||+.... ..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~~~~l~Dt~G~~~~~----------~~ 77 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG--AVNHPVTF-LDDQGNVIKFNVWDTAGQEKKA----------VL 77 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTT--EEEEEEEE-EBTTSCEEEEEEEEECSGGGTS----------CC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--eeeEEEEE-EeCCCcEEEEEEEecCCchhhc----------hH
Confidence 46899999999999999999997654221 22222 22222111 11122 679999999987322 23
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
...++..+|++|+|+|++++.+..+.. +...+... ..+.|+++|+||+|+...+..............+. +++++||
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 156 (218)
T 4djt_A 78 KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNY-EYFEISA 156 (218)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCC-EEEEEBT
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-cEEEEec
Confidence 345678899999999999876655532 33333332 33589999999999987544444444444444555 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++++.|.+.+.+
T Consensus 157 ~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 157 KTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp TTTBTTTHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999887754
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=179.58 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=111.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++...... ..+. ++.+.....+...+ ..+.+|||||+... ...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 74 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKAT--IGADFLTKEVMVDDRLVTMQIWDTAGQERF----------QSLG 74 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSS-CCCC--CSEEEEEEEEESSSCEEEEEEEEECSSGGG----------SCSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCc--ccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHhH
Confidence 46899999999999999999998764321 1222 45566555555554 57999999998732 2223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-C----CCCcEEEEecCCCcccCCcCcHHHHHHHHH-hcCCCCcE
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-A----PQIKPIVAMNKCESLHNGTGSLAGAAAESL-MLGFGDPI 270 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~----~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-~~~~~~~i 270 (607)
..++..+|++|+|+|++++.+..+.. +...+... . .+.|+++|+||+|+... ............ ..+. +++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~ 152 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNI-PYF 152 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSC-CEE
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc-ccCHHHHHHHHHhcCCc-eEE
Confidence 45678999999999998865554421 22222222 1 36899999999999843 333333333333 3344 789
Q ss_pred EeecCCCCChHHHHHHhccchHHH
Q 007334 271 AISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
++||++|.|++++++.|.+.+.+.
T Consensus 153 ~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 153 ETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999877553
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-20 Score=175.93 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++....... .+ +..+......... ...+.+|||||+. ++....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~---t~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 73 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTY-IP---TIEDTYRQVISCDKSVCTLQITDTTGSH----------QFPAMQ 73 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTT-SC---CCCEEEEEEEEETTEEEEEEEEECCGGG----------SCHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcc-cC---ccccceeEEEEECCEEEEEEEEeCCChH----------HhHHHH
Confidence 468999999999999999999987643111 11 1111111222233 3578999999987 233445
Q ss_pred HHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
..++..+|++++|+|++++.+..+ ..+..++... ..+.|+++|+||+|+... ..............++ +++++|
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~S 151 (199)
T 2gf0_A 74 RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR-EVDTREAQAVAQEWKC-AFMETS 151 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC-SSCHHHHHHHHHHHTC-EEEECB
T ss_pred HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc-ccCHHHHHHHHHHhCC-eEEEEe
Confidence 667889999999999987655444 2244444443 236899999999999763 2333444444455566 789999
Q ss_pred cCCCCChHHHHHHhccchHH
Q 007334 274 AETGLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~ 293 (607)
|++|.|+++++++|.+.+..
T Consensus 152 a~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 152 AKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp TTTTBSHHHHHHHHHHHCSS
T ss_pred cCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999876643
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=178.67 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=103.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+|+|++.....+..+++++.+.....+.+++.. +.+|||+|..... .. ....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~------~~---~~~~ 76 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGEN------EW---LHDH 76 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----------CT---TGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchh------hh---HHHh
Confidence 47999999999999999999997655555666677777777777788774 4689999964321 11 0123
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|+++. ... ..++|+++|+||+|+........ +.. ..+.. ..+
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~--~~~-----~~~a~----~~~ 145 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSV--SEG-----RAXAV----VFD 145 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCH--HHH-----HHHHH----HTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccH--HHH-----HHHHH----HhC
Confidence 55679999999999874 011 13789999999999865322111 100 01111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++|+.+.+.+...
T Consensus 146 ~~~~e~SA~~g~~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 146 XKFIETSAAVQHNVKELFEGIVRQVRLR 173 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CceEEeccccCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999998876543
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-20 Score=177.81 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=102.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++........ |.......+.+++..+.+|||||+.. +...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~------t~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~ 88 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP------TLHPTSEELTIAGMTFTTFDLGGHIQ----------ARRVWKN 88 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------C------CCCCSCEEEEETTEEEEEEEECC--------------CCGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCC------CCCceeEEEEECCEEEEEEECCCcHh----------hHHHHHH
Confidence 3589999999999999999999876543322 22222456667889999999999872 3333456
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH--HHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc------------
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML------------ 264 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~------------ 264 (607)
++..+|++++|+|++++.+..+.. +...++. ...+.|+++|+||+|+... ...++....+...
T Consensus 89 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLK 166 (198)
T ss_dssp GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCHHHHHHHhCcccccccccccccc
Confidence 788999999999999876555421 2222221 1247899999999999752 2233333222211
Q ss_pred ----CCCCcEEeecCCCCChHHHHHHhccch
Q 007334 265 ----GFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 265 ----~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
...+++++||++|.|+++++++|.+.+
T Consensus 167 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 167 ELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 112579999999999999999987653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=174.60 Aligned_cols=146 Identities=20% Similarity=0.213 Sum_probs=105.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+... ....
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~ 82 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPS 82 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG----------GSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH----------HHHH
Confidence 4799999999999999999999764 33445666777777777777774 678999999654421 1235
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++. .....++|+++|+||+|+.+...... +.... .... .++
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~-----~~~~----~~~ 151 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST--EEGER-----KAKE----LNV 151 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH--HHHHH-----HHHH----HTC
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH--HHHHH-----HHHH----cCC
Confidence 67789999999999875 01124789999999999975432211 11110 1111 156
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 152 ~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 152 MFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999887643
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=172.24 Aligned_cols=160 Identities=25% Similarity=0.359 Sum_probs=114.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
++|+++|.+|||||||+|+|++... .+...++ +|.+...+.+.+.+..+.+|||||+....+.. . .......+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-~---~~~~~~~~ 80 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPG--VTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS-I---DEIIARDY 80 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCE-EEEECTT--SCCEEEEEEEEETTEEEEEEECCCCSCCSSSS-H---HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-cccCCCC--eeccceEEEEEeCCcEEEEEECCCcCcccccc-H---HHHHHHHH
Confidence 6899999999999999999998754 3555676 78888888888889999999999998543211 1 11122334
Q ss_pred h--hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCC
Q 007334 201 L--AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGL 278 (607)
Q Consensus 201 ~--~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~ 278 (607)
+ ..+|++++|+|.++. .....+...+.. .+.|+++|+||+|+........ ........++. +++++||++|.
T Consensus 81 ~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~-~~~~~~~~~~~-~~~~~Sa~~~~ 154 (188)
T 2wjg_A 81 IINEKPDLVVNIVDATAL--ERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGV-KVVPLSAAKKM 154 (188)
T ss_dssp HHHHCCSEEEEEEEGGGH--HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTS-CEEECBGGGTB
T ss_pred HhccCCCEEEEEecchhH--HHHHHHHHHHHh--cCCCEEEEEEhhhccccccchH-HHHHHHHHhCC-CeEEEEecCCC
Confidence 4 359999999999751 111223333433 3789999999999876433221 12223334555 78999999999
Q ss_pred ChHHHHHHhccchHH
Q 007334 279 GMTELYEALRPSVED 293 (607)
Q Consensus 279 gi~eL~~~i~~~l~~ 293 (607)
|++++++.|.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 155 GIEELKKAISIAVKD 169 (188)
T ss_dssp SHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999877654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=178.43 Aligned_cols=148 Identities=20% Similarity=0.196 Sum_probs=102.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..++|+++|.+|||||||+|+|++.... .+.+..|++.......+...+..+.||||||..+... ....
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 91 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS----------LAPM 91 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG----------GTHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh----------hhHH
Confidence 4589999999999999999999987532 3555666665544333323445788999999654321 1235
Q ss_pred HHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... .+.. .++.+ ..++
T Consensus 92 ~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~--~~~~-----~~~~~----~~~~ 160 (192)
T 2fg5_A 92 YYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP--LKDA-----KEYAE----SIGA 160 (192)
T ss_dssp HHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHH-----HHHHH----TTTC
T ss_pred hhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC--HHHH-----HHHHH----HcCC
Confidence 678899999999998751 11 1378999999999997532211 1111 11111 2357
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.|.+.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 899999999999999999987754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=175.49 Aligned_cols=148 Identities=20% Similarity=0.134 Sum_probs=102.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++. .+.||||||..+... ...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~ 88 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS----------ITR 88 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC----------CCH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh----------hHH
Confidence 4589999999999999999999976532 223344455555556667664 778999999654421 123
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... +....+ .+ ..
T Consensus 89 ~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--------~~----~~ 156 (191)
T 2a5j_A 89 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF--------AR----EH 156 (191)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH--------HH----HH
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHH--------HH----Hc
Confidence 5677899999999998751 11 1378999999999997542211 111111 11 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.|.+.+.+
T Consensus 157 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 157 GLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999876643
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-20 Score=177.99 Aligned_cols=161 Identities=13% Similarity=0.004 Sum_probs=111.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeecc-------CCCCceeeeeEEE-----EeeeCCeeEEEecCCCCccccCch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYN-------TPDDHVTRDIREG-----LAKLGDLRFKVLDSAGLETEATSG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~-------~~~~~~T~~~~~~-----~~~~~~~~~~liDTpG~~~~~~~~ 187 (607)
..+|+|+|.+|||||||+|.+.+........ ... .|....+. .+......+.+|||||++
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------ 85 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDE--RTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV------ 85 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSC--EEEEEEECCSSCCCSSSCEEEEEEEECCSCC------
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccc--cceeeeecccccccccCCceEEEEEeCCChH------
Confidence 4689999999999999998887653221100 011 12222111 112234579999999988
Q ss_pred hHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHH----HHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHH
Q 007334 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDL----EVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAE 260 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~----~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~ 260 (607)
++......++..+|++|+|+|++++....+. .+..|+... ..+.|+++|+||+|+... ...++....
T Consensus 86 ----~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~ 159 (198)
T 3t1o_A 86 ----FYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEMVRAV 159 (198)
T ss_dssp ----SCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHHHHHH
Confidence 2334556688999999999999966544443 345666653 257899999999999764 334444445
Q ss_pred HHhcCCCCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 261 SLMLGFGDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 261 ~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
+...+..+++++||++|.|++++++.|.+.+.+.
T Consensus 160 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 160 VDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp HCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 5555655789999999999999999998877553
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-20 Score=173.65 Aligned_cols=152 Identities=19% Similarity=0.141 Sum_probs=107.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++..........+ . ....+.+++..+.+|||||+.. +...+..
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~--~----~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 84 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--S----NVEEIVINNTRFLMWDIGGQES----------LRSSWNT 84 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS--S----SCEEEEETTEEEEEEEESSSGG----------GTCGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc--e----eeEEEEECCEEEEEEECCCCHh----------HHHHHHH
Confidence 4789999999999999999999887644443333 2 2234556789999999999973 2233456
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-H-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-E-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i~ 271 (607)
++..+|++++|+|++++.+..+. . +...+... ..+.|+++|+||+|+..... ..+...... ..++ .+++
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~-~~~~ 161 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQW-HIQA 161 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEEE
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCC--HHHHHHHhCcccccCCce-EEEE
Confidence 78899999999999998666652 1 22222221 25789999999999976422 122211111 1122 5799
Q ss_pred eecCCCCChHHHHHHhccc
Q 007334 272 ISAETGLGMTELYEALRPS 290 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~ 290 (607)
+||++|.|++++++.|.+.
T Consensus 162 ~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 162 CCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CBTTTTBTHHHHHHHHHTC
T ss_pred ccCCCCcCHHHHHHHHHhh
Confidence 9999999999999998754
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-20 Score=173.83 Aligned_cols=155 Identities=15% Similarity=0.056 Sum_probs=108.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+|+|.+|||||||+|+|++..... ... .|....+..+...+..+.+|||||+. ++...+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~----~t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 86 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNE-DMI----PTVGFNMRKITKGNVTIKLWDIGGQP----------RFRSMWER 86 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCC----CCCSEEEEEEEETTEEEEEEEECCSH----------HHHTTHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCC-ccC----CCCceeEEEEEeCCEEEEEEECCCCH----------hHHHHHHH
Confidence 4689999999999999999999876531 111 23333344566788999999999987 45556677
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-----cCCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLM-----LGFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-----~~~~~~i~ 271 (607)
++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+..... ..+....... .+. .+++
T Consensus 87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~~ 163 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREI-CCYS 163 (188)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEEE
T ss_pred HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC--HHHHHHHhChhhhccCCe-eEEE
Confidence 88999999999999986555442 122222221 24789999999999976422 1221111111 111 5689
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|+++++++|.+.+.
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTCC
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987664
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-20 Score=174.39 Aligned_cols=149 Identities=20% Similarity=0.165 Sum_probs=103.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeE-EEEEEEcC-----------eEEEEEecCCCcccccccC
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSV-RVHFEYQG-----------RTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~-~~~~~~~~-----------~~~~liDTpG~~~~~~~~~ 390 (607)
..++|+++|.+|||||||+|+|++... .....+.++.+.. ...+.+++ ..+.||||||+.+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR---- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH----
Confidence 358999999999999999999997642 2233344444443 33444553 478899999964331
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchhh----------HHh-----cCCcEEEEEeCccCCCCcCch-HHHHHHHHhcH
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEVR----------AVE-----EGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVP 454 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~~----------~~~-----~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~ 454 (607)
.....+++.+|++|+|+|+++.. ... .++|+++|+||+|+.+..... +....+
T Consensus 85 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~----- 153 (195)
T 3bc1_A 85 ------SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL----- 153 (195)
T ss_dssp ------HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHH-----
T ss_pred ------HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHH-----
Confidence 23456778999999999998751 111 478999999999997542211 111111
Q ss_pred HHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 455 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
.+. .+++++++||++|.|++++|+.|.+.+.+.
T Consensus 154 ---~~~----~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 154 ---AEK----YGIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ---HHH----HTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ---HHH----cCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 111 146899999999999999999998876543
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-20 Score=172.21 Aligned_cols=144 Identities=16% Similarity=0.126 Sum_probs=98.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee-ecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.++|+++|.+|||||||+|+|++..... ..+..+++.. ...+.++ +..+.+|||||+.+.. ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~ 73 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL--TQTVCLDDTTVKFEIWDTAGQERYH----------SLAP 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEETTEEEEEEEEEECCSGGGG----------GGHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCEEEEEEEEeCCCcHHhh----------hhhH
Confidence 5899999999999999999999764322 2233343333 3334444 4578899999965432 1134
Q ss_pred HHHhhccEEEEEeccchh-----------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.++..+|++++|+|+++. ... ..+.|+++|+||+|+.+..... .+... ++.. ..+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~--~~~~~-----~~~~----~~~ 142 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD--FQEAQ-----SYAD----DNS 142 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC--HHHHH-----HHHH----HTT
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC--HHHHH-----HHHH----HcC
Confidence 567889999999999875 011 2378999999999997542211 11111 1111 135
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++++||++|.|++++|+.|.+.
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~i~~~ 166 (170)
T 1r2q_A 143 LLFMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 789999999999999999988764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=184.14 Aligned_cols=159 Identities=19% Similarity=0.197 Sum_probs=115.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..+|+++|.+|||||||+|+|+... ........+ +|...........+..+.+|||||+.. +.....
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 82 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGPIKFNVWDTAGQEK----------FGGLRD 82 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTT--EEEEEEEEEETTEEEEEEEEEECSGGG----------TSCCCH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEeCCChHH----------HhHHHH
Confidence 4689999999999999999966543 334445555 677666655555567899999999873 223344
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.++..+|++++|+|++++.+..+. .+...+.....+.|+++|+||+|+....... .........+. .++++||++|
T Consensus 83 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~-~~~~~Sa~~~ 159 (221)
T 3gj0_A 83 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNL-QYYDISAKSN 159 (221)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTC-EEEECBGGGT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH--HHHHHHHHcCC-EEEEEeCCCC
Confidence 577899999999999986655542 2334444445588999999999997654322 22223334455 7899999999
Q ss_pred CChHHHHHHhccchHH
Q 007334 278 LGMTELYEALRPSVED 293 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~ 293 (607)
.|++++++.|.+.+..
T Consensus 160 ~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 160 YNFEKPFLWLARKLIG 175 (221)
T ss_dssp BTTTHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999877643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-20 Score=175.93 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=106.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++....... .|.......+.+++..+.+|||||+... ......
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 86 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQ------PTWHPTSEELAIGNIKFTTFDLGGHIQA----------RRLWKD 86 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCC------CCCSCEEEEEEETTEEEEEEECCCSGGG----------TTSGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccc------cCCCCCeEEEEECCEEEEEEECCCCHHH----------HHHHHH
Confidence 358999999999999999999987654322 2333345667778899999999999732 223345
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HH-HHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc-----------C
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VG-KWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLML-----------G 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~-~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~-----------~ 265 (607)
++..+|++++|+|++++.+..+.. +. ..++.. ..+.|+++|+||+|+... ...++....+... .
T Consensus 87 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp GCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTCSSCCC---CCSSC
T ss_pred HHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCHHHHHHHhCCccccccccccccc
Confidence 678999999999999876655422 22 222211 247899999999999762 2223322222111 1
Q ss_pred CCCcEEeecCCCCChHHHHHHhccc
Q 007334 266 FGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 266 ~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
..+++++||++|.|++++++.|.+.
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHhh
Confidence 1157999999999999999998754
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-21 Score=204.56 Aligned_cols=155 Identities=32% Similarity=0.407 Sum_probs=110.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+++|+++|+||||||||+|+|++.+..++++.+|||+|.....+.++|..+.||||||+.+.. ...+.+.+.++..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~--~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS--DQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch--hHHHHHHHHHHhhh
Confidence 3579999999999999999999998778899999999999888888999999999999986542 22334444566677
Q ss_pred HhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 403 LMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
+..+|++|+|+|++++ ......+|+++|+||+|+.+..... .. + ......+++++||
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~------------~~-~--~~~~~~~~i~iSA 365 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLIT------------SL-E--YPENITQIVHTAA 365 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGST------------TC-C--CCTTCCCEEEEBT
T ss_pred hhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhH------------HH-H--HhccCCcEEEEEC
Confidence 8889999999999875 1112458999999999998653211 00 0 1113568999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~~~~ 494 (607)
++|.|++++++.+.+.+...
T Consensus 366 ktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 366 AQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TTTBSHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999877543
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=167.56 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=100.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++... .....+.++.+.....+.+++. .+.+|||||..+.. .....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~ 71 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDF-AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA----------SLAPX 71 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG----------GGHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh----------hhhhh
Confidence 37899999999999999999997642 2223344444444455556554 77899999965432 11346
Q ss_pred HHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|+++.. .. ..+.|+++|+||+|+.+.....+....... ++.+ ..++
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~----~~~~----~~~~ 143 (170)
T 1ek0_A 72 YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGE----KLAE----EKGL 143 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHH----HHHH----HHTC
T ss_pred hhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHH----HHHH----HcCC
Confidence 778999999999998760 11 247899999999999754211111011011 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|.|++++|+.+.+.
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 144 LFFETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999988753
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-20 Score=178.08 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=95.0
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
+..++|+++|.+|||||||+|+|++.... ...+..|++ .....+.+++ ..+.||||||..+.. ..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~ 93 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--FQMKTLIVDGERTVLQLWDTAGQERFR----------SI 93 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCH----------HH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce--eEEEEEEECCEEEEEEEEECCCCcchh----------hh
Confidence 34689999999999999999999976532 233333433 3334455555 468899999964331 22
Q ss_pred HHHHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCC------cCc-hHHHHHHHHhcHHHH
Q 007334 399 SRKNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSG------RQN-SALYKRVKEAVPQEI 457 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~------~~~-~~~~~~~~~~~~~~~ 457 (607)
...+++.+|++|+|+|+++.. .+ ..++|+++|+||+|+.+. ... .+... .+
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~--------~~ 165 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGE--------KL 165 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHH--------HH
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHH--------HH
Confidence 346778899999999998750 11 137899999999998631 111 11111 11
Q ss_pred HhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 458 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.. ..+++++++||++|.|++++|+.+.+.+
T Consensus 166 ~~----~~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 166 AM----TYGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HH----HHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH----HcCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 11 1256899999999999999999988765
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=171.76 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=104.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
..++|+++|.+|||||||+|+|++....... ...|.+.....+.+++..+.||||||..+... ....+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 87 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN----------LWEHY 87 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGG----------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHH----------HHHHH
Confidence 4689999999999999999999977522222 22344455566777889999999999755421 11245
Q ss_pred HhhccEEEEEeccchh-----------hHHh------cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHH-hhCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAVE------EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ-TVIPQV 464 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 464 (607)
+..+|++|+|+|+++. .... .++|+++|+||+|+.+.....+ +. ..+. ..+. .
T Consensus 88 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~----~~~~~~~~~-~ 158 (190)
T 2h57_A 88 YKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVK----VS----QLLCLENIK-D 158 (190)
T ss_dssp GGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHH----HH----HHHTGGGCC-S
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHH----HH----HHhChhhcc-C
Confidence 6789999999999875 1111 4789999999999976432211 11 1111 1111 2
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+++++++||++|.|++++|+.|.+.+.+
T Consensus 159 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 159 KPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred CceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 35689999999999999999999886543
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-20 Score=174.32 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=101.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.+|||||..+... ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~ 74 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA----------LGPI 74 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh----------hHHH
Confidence 5899999999999999999999764 33334555555655556666654 677999999654321 1123
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|+++. .....++|+++|+||+|+.+..... .+... ++.+. .++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~-----~~~~~----~~~ 143 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS--IQEAE-----SYAES----VGA 143 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC--HHHHH-----HHHHH----TTC
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC--HHHHH-----HHHHH----cCC
Confidence 45689999999999875 1112578999999999997643211 11111 11111 257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++|+.+.+.+.
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 144 KHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999987653
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=168.32 Aligned_cols=147 Identities=22% Similarity=0.299 Sum_probs=102.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ....+.+++.+.....+.+++. .+.||||||..+.. .....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~ 88 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQ 88 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC--CccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH----------HHHHH
Confidence 4899999999999999999999764 3345566666666666777765 47899999964431 11235
Q ss_pred HHhhccEEEEEeccchhh----------H---Hh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------A---VE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~---~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++.. . .. .++|+++|+||+|+.+.....+....+. .. .+
T Consensus 89 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~--------~~ 156 (190)
T 3con_A 89 YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELA----KS--------YG 156 (190)
T ss_dssp -CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HH--------HT
T ss_pred hhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHH----HH--------cC
Confidence 677899999999998751 1 11 3789999999999976322222222111 11 14
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++++||++|.|++++++.|.+.+.+.
T Consensus 157 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 157 IPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999998877654
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-20 Score=177.84 Aligned_cols=149 Identities=19% Similarity=0.177 Sum_probs=100.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+... ...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----------~~~ 92 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS----------VTR 92 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC----------CCH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH----------HHH
Confidence 45899999999999999999999764 3334455556666666677777 5788999999643321 123
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. . ...++|+++|+||+|+.+...... .... .+.+ ..+
T Consensus 93 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~-----~~~~----~~~ 161 (200)
T 2o52_A 93 SYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF--LEAS-----RFAQ----ENE 161 (200)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH--HHHH-----HHHH----HTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH--HHHH-----HHHH----HcC
Confidence 5678899999999998751 1 124789999999999975432211 1110 1111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+.+.+.+
T Consensus 162 ~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 162 LMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999887643
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-20 Score=179.91 Aligned_cols=150 Identities=17% Similarity=0.142 Sum_probs=103.3
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCce-eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
+..+||+++|.+|||||||+|+|++.... ...+..|++.......+...+..+.||||||..+. . ....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---------~-~~~~ 90 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY---------R-TITT 90 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC---------H-HHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH---------H-HHHH
Confidence 34689999999999999999999976422 22233344444333333334568999999994322 1 2245
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... +.... +.+ ..
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~----~~ 158 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQL--------LAE----QL 158 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH--------HHH----HH
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHH--------HHH----Hc
Confidence 6788999999999998751 11 1478999999999996543221 11111 111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 159 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 159 GFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999887654
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-19 Score=161.49 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+|+|++.. ......+++.+.....+..++. .+.+|||||..+.. .....+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----------~~~~~~ 71 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH--FVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQY 71 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc--CccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh----------HHHHHh
Confidence 689999999999999999999763 2334455555555556666665 46789999964431 122356
Q ss_pred HhhccEEEEEeccchhh-----------H--Hh--cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A--VE--EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~--~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++.. . .. .++|+++|+||+|+.+.....+....+. .. .++
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~--------~~~ 139 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLA----RS--------YGI 139 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHH----HH--------HTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHH----HH--------cCC
Confidence 77899999999998751 0 11 2799999999999986432222222211 11 146
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|++++++.+.+.+.
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 140 PYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-20 Score=169.92 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=103.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++. .+.||||||..+... ....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 73 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA----------ITKA 73 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC----------CCHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH----------HHHH
Confidence 5899999999999999999999764 33334455556666666677664 778999999654321 1235
Q ss_pred HHhhccEEEEEeccchhh-------------HHhcCCcEEEEEeCccCCCCcCc-hHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------------AVEEGRGLVVIVNKMDLLSGRQN-SALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------------~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++.. ....+.|+++|+||+|+.+.... .+....+ .+. .++
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--------~~~----~~~ 141 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGL--------AKR----LKL 141 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHH--------HHH----HTC
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHH--------HHH----cCC
Confidence 677899999999998751 11148999999999999754321 1111111 111 156
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++++.+.+.+
T Consensus 142 ~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 142 RFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EEEECBTTTTBSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHH
Confidence 899999999999999999988765
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=170.84 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=102.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+++|+.+.....+.+++. .+.||||||+.+.... ..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 86 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL----------RP 86 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS----------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH----------hH
Confidence 46899999999999999999999764 4456667777777777777776 5569999997654211 12
Q ss_pred HHHhhccEEEEEeccchhh--------H---H---hcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------A---V---EEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------~---~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++|+|+|+++.. . . ..++|+++|+||+|+.+.......+... .+.+..+....++...
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 3567899999999998751 0 1 1389999999999997531100000000 0000000001111111
Q ss_pred C-CCEEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 466 G-IPVVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 466 ~-~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
+ .+++++||++|.|++++|+.+.+.+.+..
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 3 38999999999999999999988765443
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-20 Score=173.81 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=101.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+|+|++.....+.++.+. ....+.+++..+.+|||||+.+.... ...++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~~~ 88 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP----TSEELAIGNIKFTTFDLGGHIQARRL----------WKDYF 88 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSC----EEEEEEETTEEEEEEECCCSGGGTTS----------GGGGC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCC----CeEEEEECCEEEEEEECCCCHHHHHH----------HHHHH
Confidence 47999999999999999999998764433333333 34567788999999999997654211 12355
Q ss_pred hhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH---HhhCCCCC
Q 007334 404 MRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI---QTVIPQVT 465 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 465 (607)
+.+|++++|+|++++ .. ...++|+++|+||+|+.+.... +.+.+.+.... ...++...
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE----AELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH----HHHHHHTTCSSCCC---CCSSC
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCH----HHHHHHhCCccccccccccccc
Confidence 689999999999875 11 1257899999999999763221 11111110000 00012234
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++++||++|.|++++|+.+.+
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHh
Confidence 578999999999999999998864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-20 Score=172.28 Aligned_cols=155 Identities=19% Similarity=0.148 Sum_probs=105.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++..........+ .....+.+.+..+.+|||||+... ...+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~------~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 80 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG------FNVETLSYKNLKLNVWDLGGQTSI----------RPYWR 80 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT------CCEEEEEETTEEEEEEEEC----C----------CTTGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc------cceEEEEECCEEEEEEECCCCHhH----------HHHHH
Confidence 35799999999999999999999876643333332 233445567899999999999732 22334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC----CCc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF----GDP 269 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~----~~~ 269 (607)
.++..+|++++|+|++++.+..+ +..|+... ..+.|+++|+||+|+..... ..+.......... .++
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEE
Confidence 56789999999999998866654 22333332 35789999999999976422 1222211111111 157
Q ss_pred EEeecCCCCChHHHHHHhccchHH
Q 007334 270 IAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+++||++|.|+++++++|.+.+.+
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHHh
Confidence 999999999999999999887654
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-20 Score=177.10 Aligned_cols=146 Identities=16% Similarity=0.150 Sum_probs=101.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.... ....+.++.+.....+..++ ..+.||||||+.+.. .....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~ 76 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR----------TITTA 76 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC-SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH----------HHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc----------chHHH
Confidence 489999999999999999999976432 22223333333334445554 478899999964331 22345
Q ss_pred HHhhccEEEEEeccchhh----------HH-h---cCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV-E---EGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~-~---~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|+++.. .. . .++|+++|+||+|+.+..... +....+ .+. .+
T Consensus 77 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--------~~~----~~ 144 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQL--------ADH----LG 144 (203)
T ss_dssp TGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHH--------HHH----HT
T ss_pred hhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHH--------HHH----CC
Confidence 778899999999998751 11 1 478999999999997643221 111111 111 14
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 145 FEFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp CEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-20 Score=175.26 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=101.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++ ..+.||||||..+.... ..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~ 89 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI----------TT 89 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS----------GG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh----------HH
Confidence 3589999999999999999999987532 22223333333333444444 47889999997554211 12
Q ss_pred HHHhhccEEEEEeccchh-----------hHHh---cCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAVE---EGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~~---~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++..+|++|+|+|+++. .... .++|+++|+||+|+.+..... +....+ .+. .
T Consensus 90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~--------~~~----~ 157 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL--------ADD----L 157 (189)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH--------HHH----H
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH--------HHH----c
Confidence 456789999999999875 1111 378999999999997543221 111111 111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++++||++|.|++++|+.+.+.+.+
T Consensus 158 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 158 GFEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887643
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-20 Score=175.40 Aligned_cols=156 Identities=21% Similarity=0.164 Sum_probs=109.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++....... .. .|.+.....+.+++..+.+|||||+.. +...+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 86 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN--IL--PTIGFSIEKFKSSSLSFTVFDMSGQGR----------YRNLWEH 86 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CC--CCSSEEEEEEECSSCEEEEEEECCSTT----------TGGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cC--CccceeEEEEEECCEEEEEEECCCCHH----------HHHHHHH
Confidence 478999999999999999999987632221 12 344556667777889999999999873 2233456
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhC---CCCcEEEEecCCCcccCCcCcHHHHHHHHH--h---cCCCCc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHA---PQIKPIVAMNKCESLHNGTGSLAGAAAESL--M---LGFGDP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~---~~~~~~ 269 (607)
++..+|++++|+|++++.+..+. .+...+.... .+.|+++|+||+|+..... .++....+. . .++ ++
T Consensus 87 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~ 163 (190)
T 2h57_A 87 YYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT--SVKVSQLLCLENIKDKPW-HI 163 (190)
T ss_dssp GGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCE-EE
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC--HHHHHHHhChhhccCCce-EE
Confidence 78999999999999886444431 2223333221 4789999999999976422 222222221 1 122 67
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|.|++++++.|.+.+.
T Consensus 164 ~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 164 CASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEccCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999987664
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-19 Score=172.57 Aligned_cols=149 Identities=22% Similarity=0.188 Sum_probs=106.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+..... .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------~ 75 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG----------V 75 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC----------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH----------H
Confidence 35899999999999999999999874 3334455566676666666665 478899999975542111 2
Q ss_pred HHHhhccEEEEEeccchhh-----------H--Hh-----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A--VE-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP 462 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~--~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (607)
.+++.+|++|+|+|++++. . .. .++|+++|+||+|+.+.....+.... +..
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~--------~~~--- 144 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA--------WCY--- 144 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHH--------HHH---
T ss_pred HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHH--------HHH---
Confidence 3567899999999998751 0 11 47899999999999743222111111 111
Q ss_pred CCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 463 QVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 463 ~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
...+++++++||++|.|++++|+.|.+.+.+
T Consensus 145 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 145 SKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1236789999999999999999999887653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-20 Score=175.02 Aligned_cols=148 Identities=21% Similarity=0.208 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.+++ ..+.||||||..+.. .....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 88 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR---------KSMVQ 88 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH---------TTTHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh---------hhhhH
Confidence 458999999999999999999997643 233345555566666667776 478899999964321 01234
Q ss_pred HHHhhccEEEEEeccchh-----------hH--H--hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RA--V--EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~--~--~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+++.+|++|+|+|+++. .. . ..++|+++|+||+|+.+..... +... .+.+ .
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~--------~~~~----~ 156 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ--------KFAD----T 156 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH--------HHHH----H
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH--------HHHH----H
Confidence 567899999999999875 01 1 2478999999999997543211 1111 1111 1
Q ss_pred CCCCEEEcccCCC---CCHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEG---RGRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~~v~iSA~~g---~gv~~l~~~i~~~~~ 492 (607)
.+++++++||++| .|++++|+.+.+.+.
T Consensus 157 ~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 157 HSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp TTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred cCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 2568999999999 999999999876543
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-20 Score=198.46 Aligned_cols=164 Identities=18% Similarity=0.266 Sum_probs=118.1
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe-eEEEecCCCCccccCchhHHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-RFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
....++|+|+|.+|||||||+|+|++...+.++..++ +|.+.....+.+.+. .+.+|||||+......... ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~g--tT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~---~~~ 105 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAG--TTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL---RVE 105 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC---------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC---CHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCC--eeeeeEEEEEEECCCCeEEEEECcCCCcccchhHH---HHH
Confidence 3446799999999999999999999988777777777 888888888887766 8999999999854432211 234
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.+..++..+|++|+|+|+ +....+..+..++.+. +.|+++|+||+|+...... +.........+. +++++||+
T Consensus 106 ~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~-~v~~vSAk 178 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEA-KVLLVSAL 178 (423)
T ss_dssp HHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTC-CCCCCSSC
T ss_pred HHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCC-CEEEEECC
Confidence 466788999999999999 5666777788888877 8899999999999876543 111222223455 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++++.|.+.++
T Consensus 179 tg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILP 195 (423)
T ss_dssp CTTSTTTHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999999987764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=173.46 Aligned_cols=144 Identities=19% Similarity=0.222 Sum_probs=96.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|++|||||||+|+|++.......++.+.+ ...+.+++..+.+|||||+.+... ....++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~~ 90 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQARR----------VWKNYL 90 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC----CC----------GGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCcHhhHH----------HHHHHH
Confidence 479999999999999999999987544444444443 346678889999999999755421 112456
Q ss_pred hhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhh--------
Q 007334 404 MRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTV-------- 460 (607)
Q Consensus 404 ~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-------- 460 (607)
+.+|++++|+|+++. .. ...++|+++|+||+|+.+..... .+.+ .+...
T Consensus 91 ~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~----~~~~----~~~~~~~~~~~~~ 162 (198)
T 1f6b_A 91 PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE----RLRE----MFGLYGQTTGKGS 162 (198)
T ss_dssp GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHH----HHHH----HHTCTTTCCCSSC
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHH----HHHH----HhCcccccccccc
Confidence 789999999999875 11 12478999999999997632211 1111 11100
Q ss_pred --CC--CCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 461 --IP--QVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 461 --~~--~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+. .....+++++||++|.|++++|+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 163 VSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp CCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 00 123568999999999999999998865
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-20 Score=178.38 Aligned_cols=149 Identities=19% Similarity=0.157 Sum_probs=101.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE--cCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY--QGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ..+..++.+.....+.+ .+..+.||||||..+.... ..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~ 90 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL----------PY 90 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC----------CG
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH----------HH
Confidence 4589999999999999999999987533 33444444444444443 3467789999997654211 12
Q ss_pred HHHhhccEEEEEeccchh----------h-H----HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV----------R-A----VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----------~-~----~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+++.+|++++|+|+++. . . ...++|+++|+||+|+.+..... ..... +.. .
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~--------~~~----~ 158 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK--------LAE----S 158 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH--------HHH----H
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH--------HHH----H
Confidence 456789999999999865 0 1 12378999999999997543321 11111 111 1
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
.+++++++||++|.|++++|+.|.+.+.+..
T Consensus 159 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 159 WGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred hCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 2568999999999999999999988775443
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=170.35 Aligned_cols=146 Identities=18% Similarity=0.176 Sum_probs=101.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.||||||..+... ....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 80 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFV-EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS----------LAPM 80 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCT-TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG----------GTHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh----------hhHH
Confidence 589999999999999999999976432 22334444444445555654 4788999999654321 1235
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +... ++.+ ..++
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~--~~~~-----~~~~----~~~~ 149 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTA--EDAQ-----TYAQ----ENGL 149 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH--HHHH-----HHHH----HTTC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCH--HHHH-----HHHH----HcCC
Confidence 678899999999998751 11 13789999999999976432211 1111 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.|.+.+
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 150 FFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999987754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-19 Score=166.51 Aligned_cols=144 Identities=18% Similarity=0.205 Sum_probs=99.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+|+|++..... +..|+.+.....+.+++. .+.||||||..+ ..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------------~~ 68 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------------AK 68 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---------------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch---------------hH
Confidence 5899999999999999999999875433 223333444556667665 567899999532 24
Q ss_pred HHhhccEEEEEeccchh-------h---HH---h----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------R---AV---E----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------~---~~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
+++.+|++|+|+|+++. . .. . .++|+++|+||+|+..........+... ++.+. .
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~-----~~~~~---~ 140 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARAR-----ALXAD---M 140 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHH-----HHHHH---H
T ss_pred HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHH-----HHHHh---h
Confidence 66789999999999876 1 11 1 3789999999999953211111111111 11111 1
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+.+++++||++|.|++++|+.+.+.+.+
T Consensus 141 ~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 141 KRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp SSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 25689999999999999999999876543
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-20 Score=174.95 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=109.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... +..+.....+... ...+.+|||||+.. +....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~ 72 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVP--TVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVR 72 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCC--CSEEEEEEEEECSSCEEEEEEEEECCSGG----------GTTTG
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCC--ccceeEEEEEEECCEEEEEEEEECCCChh----------hhhhH
Confidence 368999999999999999999987642 11111 2222222233333 35789999999873 22233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...++...++.|+++|+||+|+... +....++....+..
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 152 (184)
T 1m7b_A 73 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ 152 (184)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred HhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH
Confidence 4467899999999999986655542 244445555568999999999999753 22333444444555
Q ss_pred cCCCCcEEeecC-CCCChHHHHHHhccch
Q 007334 264 LGFGDPIAISAE-TGLGMTELYEALRPSV 291 (607)
Q Consensus 264 ~~~~~~i~iSA~-~g~gi~eL~~~i~~~l 291 (607)
++..+++++||+ +|.|++++++.|.+.+
T Consensus 153 ~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 153 IGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 564478999999 6899999999987654
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=171.30 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=102.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++... .....+.++.+.....+.+++ ..+.||||||..+... ....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 83 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTF-DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT----------LTPS 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC----------SHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh----------hhHH
Confidence 58999999999999999999997642 223333334444444555555 4678999999754421 1245
Q ss_pred HHhhccEEEEEeccchhh----------HH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|+++.. .+ ..++|+++|+||+|+.+.....+... .+.+. .+
T Consensus 84 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~--------~~~~~----~~ 151 (195)
T 1x3s_A 84 YYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGL--------KFARK----HS 151 (195)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHH--------HHHHH----TT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHH--------HHHHH----cC
Confidence 678999999999998761 11 13689999999999954321111111 11111 25
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++++||++|.|++++|+.+.+.+.+
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 152 MLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999887653
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.6e-20 Score=172.18 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.++ ...+.||||||..+.. ...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~ 75 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ----------SLG 75 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc-CCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh----------hhh
Confidence 35899999999999999999999764 223334455556665666655 3478999999964432 112
Q ss_pred HHHHhhccEEEEEeccchhh-----------H--H-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhC
Q 007334 400 RKNLMRAHVVALVLDAEEVR-----------A--V-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVI 461 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~-----------~--~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (607)
..+++.+|++|+|+|+++.. . . ..++|+++|+||+|+....... ..+.. .++.+.
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v-~~~~~-----~~~~~~- 148 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV-SEKSA-----QELAKS- 148 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCS-CHHHH-----HHHHHH-
T ss_pred HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccC-CHHHH-----HHHHHh-
Confidence 34567899999999998751 0 1 1578999999999996432110 00111 111111
Q ss_pred CCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 462 PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 462 ~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
..+.+++++||++|.|++++|+.+.+.+.+.
T Consensus 149 --~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 149 --LGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp --TTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred --cCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 2367899999999999999999998876543
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=171.51 Aligned_cols=146 Identities=22% Similarity=0.228 Sum_probs=103.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++ ..+.||||||+.+ .....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 93 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF--IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----------TIQRE 93 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----------CHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--CcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----------ccchh
Confidence 358999999999999999999998643 22333444444444556665 4678999999653 12334
Q ss_pred HHHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.+++.+|++++|+|+++. .. ...++|+++|+||+|+.+..... +.... +.+.
T Consensus 94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~--------~~~~---- 161 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK--------LATE---- 161 (196)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH--------HHHH----
T ss_pred hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH--------HHHH----
Confidence 677889999999999875 01 12478999999999997642211 11111 1111
Q ss_pred CCCCEEEcccCCCC-CHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGR-GRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~-gv~~l~~~i~~~~~~ 493 (607)
.+++++++||++|. |++++|+.+.+.+.+
T Consensus 162 ~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 162 LACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp HTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred hCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 15689999999999 999999999887654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-20 Score=177.51 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=95.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... ...+.+++.+.....+.+++. .+.||||||..+.. ....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 100 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD----------RLRP 100 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh----------HHHH
Confidence 358999999999999999999997642 334445555555556667665 67899999965432 1123
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 465 (607)
.++..+|++|+|+|+++.. . ...++|+++|+||+|+.......+.++... +.+..+....++...
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (214)
T 2j1l_A 101 LFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180 (214)
T ss_dssp ----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc
Confidence 4677899999999998751 0 113789999999999976532111110000 011111111111112
Q ss_pred CC-CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~-~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+. +++++||++|.|++++|+.+.+.+.+
T Consensus 181 ~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 181 GAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp TCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 44 89999999999999999999887654
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-20 Score=170.08 Aligned_cols=145 Identities=19% Similarity=0.201 Sum_probs=96.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.... ....+ +........+..++ ..+.+|||||+.+.. .....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~ 70 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR-ESYIP-TVEDTYRQVISCDKSICTLQITDTTGSHQFP----------AMQRL 70 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC-SSCCC-CSCEEEEEEEEETTEEEEEEEEECCSCSSCH----------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCC-CccccEEEEEEECCEEEEEEEEECCCchhhH----------HHHHH
Confidence 479999999999999999999976421 11222 22222223344444 367899999965431 22345
Q ss_pred HHhhccEEEEEeccchh-----------hHHh-----cCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAVE-----EGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
++..+|++++|+|+++. .... .++|+++|+||+|+.+....... .. . .+... .
T Consensus 71 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~--~~-~----~~~~~----~ 139 (172)
T 2erx_A 71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS--EA-E----ALART----W 139 (172)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH--HH-H----HHHHH----H
T ss_pred hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH--HH-H----HHHHH----h
Confidence 67789999999999875 0111 37899999999999754332110 00 1 11111 1
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++++||++|.|++++|+.+.+.+
T Consensus 140 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 140 KCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 46899999999999999999988754
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=174.00 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=103.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEE--EEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY--LVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~--liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+++|++. .....+.+++.+.....+.+++..+. ||||||+.+... ...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~ 96 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN--AFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR----------LRP 96 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS--CCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT----------TGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC--CCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH----------HHH
Confidence 4589999999999999999999975 33455667777777777777776555 999999754421 112
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhC-CCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVI-PQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ 464 (607)
.+++.+|++++|+|+++.. .. ..++|+++|+||+|+.+.....+...... +.+..+....+ ...
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhc
Confidence 3567899999999998761 11 13899999999999976532111111000 00111111111 112
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
...+++++||++|.|++++|+.+.+.
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 177 GAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 23469999999999999999988763
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-21 Score=187.06 Aligned_cols=160 Identities=17% Similarity=0.228 Sum_probs=106.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++...... ..+. ++.+.....+.+++ ..+.+|||||+.... ..+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~ 99 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTES-YIST--IGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TIT 99 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCH-HHHH--HCCSEEEEEEEETTEEEEEEEECCTTCTTCC----------CCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-cCCc--ccceEEEEEEEECCEEEEEEEEECCCcHhHH----------HHH
Confidence 46899999999999999999998764322 1222 55566666666666 579999999987322 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+..............+. +++++||+
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSA~ 178 (199)
T 3l0i_B 100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI-PFLETSAK 178 (199)
T ss_dssp CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCC-eEEEEECC
Confidence 4567899999999999987655442 222333332 23689999999999986554333333344555666 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.|.+.+.+
T Consensus 179 ~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 179 NATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp --HHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999887643
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=174.55 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=102.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc---CeEEEEEecCCCcccccccCcchhHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ---GRTVYLVDTAGWLQREKEKGPASLSVMQS 399 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 399 (607)
..++|+++|.+|||||||+++|++.. ....+++++.+... +.++ +..+.||||||+.+. .....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~---------~~~~~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESL---------RFQLL 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHH---------HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEE--EEecCCCccEEEEEECCCChhH---------HHHHH
Confidence 35799999999999999999999875 34445555554433 5555 568999999996432 21123
Q ss_pred HHHHhhccEEEEEeccchhh---------H---------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH------
Q 007334 400 RKNLMRAHVVALVLDAEEVR---------A---------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ------ 455 (607)
Q Consensus 400 ~~~i~~ad~~llViD~~~~~---------~---------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~------ 455 (607)
..+++.+|++|+|+|+++.. . ...++|+++|+||+|+..........+.+.+.+..
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 152 (214)
T 2fh5_B 73 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS 152 (214)
T ss_dssp HHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccch
Confidence 45688999999999998730 0 02368999999999998765443333333322210
Q ss_pred -----------------HHHhhCCCCC---CCCEEEcccCCC------CCHHHHHHHHHHH
Q 007334 456 -----------------EIQTVIPQVT---GIPVVFTSALEG------RGRIAVMHQVIDT 490 (607)
Q Consensus 456 -----------------~~~~~~~~~~---~~~~v~iSA~~g------~gv~~l~~~i~~~ 490 (607)
+..+.++... .++++++||++| .|++++|+.|.+.
T Consensus 153 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 153 AAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0000111101 678999999999 9999999988763
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.4e-20 Score=177.79 Aligned_cols=147 Identities=23% Similarity=0.203 Sum_probs=102.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc------------CeEEEEEecCCCcccccccC
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ------------GRTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~ 390 (607)
..++|+++|.+|||||||+|+|++... .....++++.+.....+.++ ...+.||||||..+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----- 97 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF----- 97 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-----
Confidence 358999999999999999999997642 22223334444444455554 357889999995322
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchhh-------HH--------hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcH
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEVR-------AV--------EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVP 454 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~~-------~~--------~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~ 454 (607)
. .....+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... +...
T Consensus 98 ----~-~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~------- 165 (217)
T 2f7s_A 98 ----R-SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAR------- 165 (217)
T ss_dssp ----H-HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHH-------
T ss_pred ----H-hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHH-------
Confidence 1 23456788999999999998751 11 1578999999999997543221 1111
Q ss_pred HHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 455 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++.+. .+++++++||++|.|++++|+.|.+.+.
T Consensus 166 -~~~~~----~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 166 -ELADK----YGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp -HHHHH----TTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred -HHHHH----CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111 2568999999999999999999987654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.5e-20 Score=174.36 Aligned_cols=159 Identities=15% Similarity=0.116 Sum_probs=103.7
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEee-eCCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK-LGDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
....+|+++|.+|||||||+|++++..... ...+...+.......+. .....+.+|||||++... ..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~ 85 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF----------DP 85 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT----------CT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHH----------hh
Confidence 446799999999999999999998753221 11111112222221121 345789999999987321 22
Q ss_pred H---HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCcccCCc-------CcHHHHHHHHH-
Q 007334 197 T---ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCESLHNGT-------GSLAGAAAESL- 262 (607)
Q Consensus 197 ~---~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~-------~~~~~~~~~~~- 262 (607)
. ..++..+|++|+|+|++++.......+..|+.+. .++.|+++|+||+|+..... ...........
T Consensus 86 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~ 165 (196)
T 3llu_A 86 TFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 165 (196)
T ss_dssp TCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh
Confidence 2 4677899999999999987333334566777653 56899999999999875321 11111112222
Q ss_pred ---hcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 263 ---MLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 263 ---~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
..+. .++++||++ .|++++++.|.+.
T Consensus 166 ~~~~~~~-~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 166 GLEKLHL-SFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TCTTSCE-EEEEECTTS-THHHHHHHHHHHH
T ss_pred hhhcCCc-ceEEEEech-hhHHHHHHHHHHH
Confidence 2333 679999999 9999999998754
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-20 Score=177.67 Aligned_cols=156 Identities=18% Similarity=0.164 Sum_probs=108.1
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+++|.+|||||||+|+|++...... .| |.......+...+..+.+|||||+..... .+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~ 84 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTT--VP----TVGVNLETLQYKNISFEVWDLGGQTGVRP----------YWR 84 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEE--CS----STTCCEEEEEETTEEEEEEEECCSSSSCC----------CCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCc--CC----CCceEEEEEEECCEEEEEEECCCCHhHHH----------HHH
Confidence 357899999999999999999987765322 22 22233445566789999999999873321 223
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPI 270 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i 270 (607)
.++..+|++++|+|++++.+..+. .+...+... ..+.|+++|+||+|+..... ..+...... ..++ +++
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 161 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTW-TIV 161 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEE
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCce-EEE
Confidence 457899999999999988766542 122333221 24789999999999976432 111111111 1122 579
Q ss_pred EeecCCCCChHHHHHHhccchHH
Q 007334 271 AISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++||++|.|++++++.|.+.+.+
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EccCCCccCHHHHHHHHHHHHHh
Confidence 99999999999999999887754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=6.9e-19 Score=168.10 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=100.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... . .+..+..+.....+..++. .+.||||||+.+.. ....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 74 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR-D-TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP----------AMQR 74 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC-C-TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH----------HHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC-C-cccCccccceeEEEEECCEEEEEEEEeCCChHHhH----------HHHH
Confidence 3589999999999999999999976432 1 1222222222333444543 67899999964331 2234
Q ss_pred HHHhhccEEEEEeccchhh-----------HH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
.++..+|++++|+|+++.. .. ..++|+++|+||+|+.+.....+....+ ...
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~--------~~~---- 142 (199)
T 2gf0_A 75 LSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV--------AQE---- 142 (199)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHH--------HHH----
T ss_pred HhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHH--------HHH----
Confidence 5678899999999998750 11 1368999999999997642222111111 111
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHHHhc
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~~ 496 (607)
.+++++++||++|.|++++|+.+.+.+.++..
T Consensus 143 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 143 WKCAFMETSAKMNYNVKELFQELLTLETRRNM 174 (199)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHHCSSSCE
T ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHhhhhc
Confidence 14689999999999999999999887654433
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-19 Score=168.36 Aligned_cols=146 Identities=17% Similarity=0.154 Sum_probs=100.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|.+|||||||+|+|++.... ..+..| .+.....+.+++. .+.||||||..+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------------- 80 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYV--QEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL--------------- 80 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCC--CCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCH---------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCC-cceEEEEEEECCEEEEEEEEECCCChhh---------------
Confidence 4589999999999999999999976432 222223 3444466777775 4567999996432
Q ss_pred HHHhhccEEEEEeccchhh-----------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++++|+|+++.. .. ..+.|+++|+||+|+..........+.. .++.+. ..
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-----~~~~~~---~~ 152 (184)
T 3ihw_A 81 QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA-----RKLSTD---LK 152 (184)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHH-----HHHHHH---TT
T ss_pred heecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHH-----HHHHHH---cC
Confidence 1667899999999998751 11 1468999999999995322111111111 111111 12
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
.++++++||++|.|++++|+.+.+.+.+.
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999998876544
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=184.59 Aligned_cols=162 Identities=17% Similarity=0.239 Sum_probs=119.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHH-HHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRT-AGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~-~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.....+...++ +|.+...+...+ ++..+.+|||||++.. ...+ ...+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~--~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~ 75 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLG--ATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKD 75 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCC--CCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcC--CccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHH
Confidence 589999999999999999999875555666677 788887777765 6789999999998721 1111 34566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh---CCCCcEEEEecCCCcccC--Cc----CcHHHHHHHHHhcCC--
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH---APQIKPIVAMNKCESLHN--GT----GSLAGAAAESLMLGF-- 266 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~---~~~~p~ilV~NK~D~~~~--~~----~~~~~~~~~~~~~~~-- 266 (607)
.++..+|++++|+|++++.+..+. .+.+++... .++.|+++|+||+|+... +. ............+|+
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 788999999999999998777764 344555443 568999999999999862 21 112333344555663
Q ss_pred CCcEEeecCCCCChHHHHHHhccch
Q 007334 267 GDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
.+++++||++ .|+.+++..+...+
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHH
Confidence 4789999999 78888887776543
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=172.56 Aligned_cols=145 Identities=21% Similarity=0.196 Sum_probs=101.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+.+|+.+.....+..++. .+.||||||..+.. .+ .
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~-----~ 86 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPR------NC-----E 86 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CC------CT-----H
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcch------hH-----H
Confidence 45899999999999999999999764 3345556666655555566654 56799999975432 11 2
Q ss_pred HHHhhccEEEEEeccchh-----------hHHh------cCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAVE------EGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIP 462 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~~------~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~ 462 (607)
.+++.+|++++|+|+++. .... .++|+++|+||+|+.+..... +....+ .+.
T Consensus 87 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~--------~~~-- 156 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL--------AGR-- 156 (187)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHH--------HHH--
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHH--------HHH--
Confidence 467889999999999875 0111 489999999999996543211 111111 111
Q ss_pred CCCCCCEEEccc-CCCCCHHHHHHHHHHHHH
Q 007334 463 QVTGIPVVFTSA-LEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 463 ~~~~~~~v~iSA-~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++++|| ++|.|++++|+.+.+.+.
T Consensus 157 --~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 157 --FGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp --HTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred --cCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 1568999999 899999999999987653
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=171.24 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=102.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+++|++.. ....+.+++.+.....+.+++. .+.||||||+.+... ....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 72 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----------LRPL 72 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT----------TGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC--CCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH----------HHHH
Confidence 4799999999999999999999753 2344555666655556667665 455999999755421 1123
Q ss_pred HHhhccEEEEEeccchh-----------hHHh---cCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAVE---EGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|++++ .... .++|+++|+||+|+.+.....+.+... .+.+..+....++...+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 56789999999999875 0111 289999999999997642111111000 00111111111111123
Q ss_pred -CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 -IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 -~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.+++++||++|.|++++|+.+.+.+
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHH
Confidence 3899999999999999999888754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-20 Score=176.40 Aligned_cols=158 Identities=11% Similarity=0.126 Sum_probs=109.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... ++.+.....+..+ ...+.+|||||+.. +....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 93 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVP--TVFENYTASFEIDTQRIELSLWDTSGSPY----------YDNVR 93 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCC--CSEEEEEEEEESSSSEEEEEEEEECCSGG----------GTTTG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCC--ccceeEEEEEEECCEEEEEEEEeCCCcHh----------hhHHH
Confidence 368999999999999999999987652 11111 2222222333333 36799999999873 22233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~ 263 (607)
..++..+|++|+|+|++++.+..+. .+...+++..++.|+++|+||+|+... +....++....+..
T Consensus 94 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (205)
T 1gwn_A 94 PLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ 173 (205)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred HhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH
Confidence 4567899999999999986655542 244455555568999999999999752 22333444444555
Q ss_pred cCCCCcEEeecC-CCCChHHHHHHhccch
Q 007334 264 LGFGDPIAISAE-TGLGMTELYEALRPSV 291 (607)
Q Consensus 264 ~~~~~~i~iSA~-~g~gi~eL~~~i~~~l 291 (607)
++...++++||+ +|.|++++++.|.+.+
T Consensus 174 ~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 174 IGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 564478999999 6899999999987654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=171.85 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=101.5
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE---cCeEEEEEecCCCcccccccCcchhHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY---QGRTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
...+||+++|.+|||||||++++.+... ..+..+++.........+ ....+.||||||..+...... .
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------~ 88 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMS--PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF-------D 88 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCC--GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC-------C
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCC--CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh-------h
Confidence 4568999999999999999999987522 223333222221222222 336889999999765421100 0
Q ss_pred HHHHHhhccEEEEEeccchh-------------hH--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEV-------------RA--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~-------------~~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
...+++.+|++|+|+|+++. .. ...+.|+++|+||+|+.+..........+......++.+....
T Consensus 89 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 89 YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE 168 (196)
T ss_dssp HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh
Confidence 13567889999999999874 00 1247899999999999864321111122222222333333322
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
..+++++++||++ .|++++|..+.+.
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHH
Confidence 4567999999999 9999999998764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=177.48 Aligned_cols=148 Identities=20% Similarity=0.219 Sum_probs=99.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ....++++.+.....+.+++ ..+.||||||+.+.... ..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 80 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI----------TS 80 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCC-C------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC----------CG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh----------HH
Confidence 3589999999999999999999986532 23345555566566677777 47889999997654211 12
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+...... +.. .++.+ ..+
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~-----~~~~~----~~~ 149 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPT--EES-----KTFAQ----ENQ 149 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCH--HHH-----HHHHH----HTT
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH--HHH-----HHHHH----HcC
Confidence 4567899999999998751 11 13789999999999975432211 111 11111 125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+.+.+.
T Consensus 150 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 150 LLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp CEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999987764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-19 Score=173.01 Aligned_cols=157 Identities=20% Similarity=0.195 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ....+.+|+.+.....+.+++ ..+.||||||+.+... ...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~ 84 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR----------LRP 84 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT----------TGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH----------HHH
Confidence 35899999999999999999999763 334556666666656666666 4678999999765421 112
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+.....+.+... .+.+..+....++...
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 164 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence 4567899999999998750 11 1279999999999997642100000000 0001111111111111
Q ss_pred CC-CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~-~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+. +++++||++|.|++++|+.+.+.+
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33 899999999999999999988754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=172.43 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCC-------CCcee--eeEEEEE-EE--cCeEEEEEecCCCcccccccC
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE-------AGLTR--DSVRVHF-EY--QGRTVYLVDTAGWLQREKEKG 390 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~-------~gtT~--~~~~~~~-~~--~~~~~~liDTpG~~~~~~~~~ 390 (607)
..+||+++|.+|||||||++.+.+.......+. ...|. +.....+ .. ....+.||||||+.+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 358999999999999999988876532211110 01111 1111111 12 23468899999965432
Q ss_pred cchhHHHHHHHHHhhccEEEEEeccchh----------h---HH------hcCCcEEEEEeCccCCCCcCchHHHHHHHH
Q 007334 391 PASLSVMQSRKNLMRAHVVALVLDAEEV----------R---AV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKE 451 (607)
Q Consensus 391 ~~~~~~~~~~~~i~~ad~~llViD~~~~----------~---~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 451 (607)
.....+++.+|++|+|+|++++ . .. ..++|+++|+||+|+.+.....
T Consensus 89 ------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~-------- 154 (198)
T 3t1o_A 89 ------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVE-------- 154 (198)
T ss_dssp ------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHH--------
T ss_pred ------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHH--------
Confidence 1234578899999999999842 0 11 1578999999999997652211
Q ss_pred hcHHHHHhhCCCCCCC-CEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 452 AVPQEIQTVIPQVTGI-PVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 452 ~~~~~~~~~~~~~~~~-~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
+..+.+ ...++ +++++||++|.|++++|+.+.+.+.+.
T Consensus 155 ----~~~~~~-~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 155 ----MVRAVV-DPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp ----HHHHHH-CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ----HHHHHH-HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 111111 22355 999999999999999999998876543
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-19 Score=171.03 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=100.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC---CeeEEEecCCCCccccCchhHHHHHHH-
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG---DLRFKVLDSAGLETEATSGSILDRTAG- 195 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~~~~~~- 195 (607)
.++|+++|.+|||||||+|+|++..+ ....+. ++.+... +.++ +..+.+|||||+. ++..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~--~~~~~~~--~~~~~~~~~~~~i~Dt~G~~----------~~~~~ 70 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTS--ITDSSAI--YKVNNNRGNSLTLIDLPGHE----------SLRFQ 70 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCC--CSCEEEE--EECSSTTCCEEEEEECCCCH----------HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--ccccCC--cceeeEE--EEecCCCccEEEEEECCCCh----------hHHHH
Confidence 57899999999999999999998764 222332 4444333 4444 6789999999998 4444
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHH----h---hCCCCcEEEEecCCCcccCCcCcH--HHHHHHHH----
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLR----K---HAPQIKPIVAMNKCESLHNGTGSL--AGAAAESL---- 262 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~----~---~~~~~p~ilV~NK~D~~~~~~~~~--~~~~~~~~---- 262 (607)
.+..++..+|++++|+|+++.. .....+.+++. . ...+.|+++|+||+|+........ ......+.
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 149 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAAFQ-REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRV 149 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTTHH-HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCCcC-HHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhc
Confidence 4566799999999999998621 11122333322 2 134689999999999986543111 00111111
Q ss_pred -----------------hcC-------------CCCcEEeecCCC------CChHHHHHHhccc
Q 007334 263 -----------------MLG-------------FGDPIAISAETG------LGMTELYEALRPS 290 (607)
Q Consensus 263 -----------------~~~-------------~~~~i~iSA~~g------~gi~eL~~~i~~~ 290 (607)
..+ .-.++++||++| .|+++++++|.+.
T Consensus 150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 011 114689999999 9999999998753
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=192.52 Aligned_cols=153 Identities=29% Similarity=0.370 Sum_probs=111.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe-EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR-TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..++|+++|++|+|||||+|+|++.+...+++++|+|.+.....+.+.+. .+.||||||+.++.. ........+..
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~---l~~~~~~~~~~ 109 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGE---LGRLRVEKARR 109 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCT---TCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccc---hhHHHHHHHHH
Confidence 35799999999999999999999987777889999999999998888876 899999999877631 11223355677
Q ss_pred HHhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcc
Q 007334 402 NLMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTS 473 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iS 473 (607)
++..+|++|+|+|++.. ...+.++|+|+|+||+|+...... +..+.+....+++++++|
T Consensus 110 ~l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-------------~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-------------ELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp HHTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-------------HHHHHSSCCTTCCCCCCS
T ss_pred HHhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-------------HHHHHHHHHcCCCEEEEE
Confidence 88899999999999432 233458999999999999876432 122334445578999999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 007334 474 ALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 474 A~~g~gv~~l~~~i~~~~ 491 (607)
|++|.|++++|+.|.+.+
T Consensus 177 Aktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 177 ALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp SCCTTSTTTHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998876
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.6e-19 Score=183.08 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=106.1
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
...++|+|+|.+|||||||+|+|++.... ...| |++.....+.+.+..+.||||||..+... ....
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~ 228 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRH 228 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETTEEEEEEECC-----CC----------SHHH
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCcEEEEEEECCCCHhHHH----------HHHH
Confidence 34689999999999999999999987533 2333 44455566778899999999999654421 1345
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|+++. ... ..++|+|+|+||+|+.+..... .+...+........+
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~--------~i~~~~~~~~~~~~~ 300 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA--------EITDKLGLHSLRHRN 300 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH--------HHHHHHTCTTCCSSC
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHH--------HHHHHhchhhhhcCC
Confidence 67889999999999764 111 1378999999999998754321 122333333334456
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.|.+.+.
T Consensus 301 ~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 301 WYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 78999999999999999999987653
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-19 Score=174.09 Aligned_cols=147 Identities=16% Similarity=0.105 Sum_probs=105.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC-CceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE-DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~-~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
..++|+++|.+|||||||+|+|+.. ....+.+++|+|.......+...+..+.||||||..+... ....
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 83 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG----------LRDG 83 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC----------CCHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH----------HHHH
Confidence 4589999999999999999996543 2345678888888776655444456788999999654321 1124
Q ss_pred HHhhccEEEEEeccchhh----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+++.+|++|+|+|+++.. . ...++|+++|+||+|+.+.....+. .. +.+ ..+++
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~~--------~~~----~~~~~ 150 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-IV--------FHR----KKNLQ 150 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGG-CC--------HHH----HHTCE
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHH-HH--------HHH----HcCCE
Confidence 677899999999999861 1 1138899999999999765322111 00 000 12568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 151 ~~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 151 YYDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp EEECBGGGTBTTTHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998877653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-21 Score=183.40 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=108.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.... ..... ++.+.....+..++ ..+.+|||||+. ++...+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 95 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGQE----------DYDRLR 95 (204)
Confidence 468999999999999999999976542 22222 44444333333333 457799999987 444555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHh
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLM 263 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~ 263 (607)
..++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+..... .........+..
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 3th5_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175 (204)
Confidence 6678899999999999987766653 34444444444789999999999976431 111122222333
Q ss_pred cCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 264 LGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 264 ~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
.+..+++++||++|.|++++++.|.+.
T Consensus 176 ~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 176 IGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 444367999999999999999988754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=183.26 Aligned_cols=181 Identities=17% Similarity=0.175 Sum_probs=119.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----eecCCCC----------------------ceeee--------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----LVGPEAG----------------------LTRDS-------------- 362 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----~~~~~~g----------------------tT~~~-------------- 362 (607)
.++|+++|.+|||||||+|+|+|.... .++..|+ +|++.
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999988654 4455564 44431
Q ss_pred ---------EEEEEEEc-CeEEEEEecCCCccccc---ccCcchhHHHHHHHHHhhccEEE-EEeccchh----h---H-
Q 007334 363 ---------VRVHFEYQ-GRTVYLVDTAGWLQREK---EKGPASLSVMQSRKNLMRAHVVA-LVLDAEEV----R---A- 420 (607)
Q Consensus 363 ---------~~~~~~~~-~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~i~~ad~~l-lViD~~~~----~---~- 420 (607)
....+... +..+.||||||+.+... .+..+......+..+++.+|.++ +|+|++.. . .
T Consensus 106 ~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~ 185 (299)
T 2aka_B 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred cCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHH
Confidence 11111121 36899999999865321 11111233345667888888766 69998763 1 1
Q ss_pred ---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC--CCCCEEEcccCCCCCHHHHHHHHHHHHH---
Q 007334 421 ---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV--TGIPVVFTSALEGRGRIAVMHQVIDTYQ--- 492 (607)
Q Consensus 421 ---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~iSA~~g~gv~~l~~~i~~~~~--- 492 (607)
...++|+++|+||+|+.+..... .+ .+...+... .+.+++++||++|.|++++++.+.+...
T Consensus 186 ~~~~~~~~~~i~V~NK~Dl~~~~~~~--~~--------~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~ 255 (299)
T 2aka_B 186 KEVDPQGQRTIGVITKLDLMDEGTDA--RD--------VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFL 255 (299)
T ss_dssp HHHCTTCSSEEEEEECGGGSCTTCCC--HH--------HHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHH
T ss_pred HHhCCCCCeEEEEEEccccCCCCchH--HH--------HHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHHh
Confidence 12478999999999998653211 01 111111111 2357899999999999999999876422
Q ss_pred ------HHhcCCChHHHHHHHHHHHHhC
Q 007334 493 ------KWCLRLPTSRLNRWLRKVMGRH 514 (607)
Q Consensus 493 ------~~~~~~~~~~l~~~l~~~~~~~ 514 (607)
.+..++++..+++++++.+..+
T Consensus 256 ~~~~~~~~~~r~~~~~l~~~l~~~l~~~ 283 (299)
T 2aka_B 256 SHPSYRHLADRMGTPYLQKVLNQQLTNH 283 (299)
T ss_dssp HCTTTGGGGGGCSHHHHHHHHHHHHHHH
T ss_pred cCCccccchhhhCHHHHHHHHHHHHHHH
Confidence 3456788899999998887643
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=171.49 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=104.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+++|++... ...+.+|+.+.....+.+++. .+.||||||+.+.... ..
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 75 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL----------RP 75 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC------------C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH----------HH
Confidence 358999999999999999999997642 345556666666656666664 7789999997654211 12
Q ss_pred HHHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCch------HHHHHHHHhcHHHHHhh
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNS------ALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~ 460 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... ...+.. .++.+.
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~-----~~~~~~ 150 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQG-----EELRKQ 150 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHH-----HHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHH-----HHHHHH
Confidence 3567899999999998751 11 1279999999999997642100 001111 111111
Q ss_pred CCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 461 IPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 461 ~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+ ...+++++||++|.|++++|+.+.+.+.+
T Consensus 151 ~---~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 151 I---GAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp H---TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred c---CCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 1 12489999999999999999999887643
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-19 Score=172.29 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=98.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||+|+|++.... ..+.+++.+.....+..++. .+.||||||+.+... ....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 92 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR----------LRPL 92 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTT----------TGGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH----------HHHh
Confidence 479999999999999999999986532 22334444444444666664 678999999755421 1123
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 466 (607)
++..+|++|+|+|+++.. .. ..++|+++|+||+|+.+.....+.+..+. +.+..+....++...+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 567899999999998751 11 13899999999999976522111111100 0111111111111123
Q ss_pred C-CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 I-PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~-~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
. +++++||++|.|++++|+.|.+.+
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3 899999999999999999998765
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=187.48 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=113.9
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeecc------------------------------CCCCceeeeeEEEEeeeC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYN------------------------------TPDDHVTRDIREGLAKLG 168 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~------------------------------~~~~~~T~~~~~~~~~~~ 168 (607)
...+|+++|++|+|||||+|+|++....+..+ ..| +|.+..+..+...
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~G--iTid~~~~~~~~~ 93 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKG--KTVEVGRAYFETE 93 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcC--ceEEEeEEEEecC
Confidence 35799999999999999999997653322221 134 8899988888889
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCC-------HhHHHHHHHHHhhCCCCc-EEEE
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH-------PLDLEVGKWLRKHAPQIK-PIVA 240 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~-------~~~~~~~~~l~~~~~~~p-~ilV 240 (607)
+..+.+|||||+. ++...+..++..+|++|+|+|++++.. .+..+.+..+... +.| +|+|
T Consensus 94 ~~~~~iiDTPGh~----------~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~--~v~~iIvv 161 (439)
T 3j2k_7 94 KKHFTILDAPGHK----------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA--GVKHLIVL 161 (439)
T ss_pred CeEEEEEECCChH----------HHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc--CCCeEEEE
Confidence 9999999999998 677777888999999999999999875 3555555555555 667 8999
Q ss_pred ecCCCcccCCc--Cc----HHHHHHHHHhcCCC-----CcEEeecCCCCChHHHHH
Q 007334 241 MNKCESLHNGT--GS----LAGAAAESLMLGFG-----DPIAISAETGLGMTELYE 285 (607)
Q Consensus 241 ~NK~D~~~~~~--~~----~~~~~~~~~~~~~~-----~~i~iSA~~g~gi~eL~~ 285 (607)
+||+|+..... .. ..+....+..+++. +++++||++|.|++++.+
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999864211 00 11122233344542 579999999999999765
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=186.92 Aligned_cols=152 Identities=20% Similarity=0.226 Sum_probs=108.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceee------------------------------cCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLV------------------------------GPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~------------------------------~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+|+|++....+. ...+|+|.+.....+++++.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 458999999999999999999976532222 22368999998888999999
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.||||||+.++. ..+..++..||++|+|+|++++ .....++| +|+|+||+
T Consensus 96 ~~~iiDTPGh~~f~----------~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~ 165 (439)
T 3j2k_7 96 HFTILDAPGHKSFV----------PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKM 165 (439)
T ss_pred EEEEEECCChHHHH----------HHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecC
Confidence 99999999975441 3345677889999999999864 12235777 99999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHHHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
|+.........++.+.+.+..-+. .+.. ...++++++||++|.|++++++
T Consensus 166 Dl~~~~~~~~~~~~i~~~~~~~l~-~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 166 DDPTVNWSNERYEECKEKLVPFLK-KVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCcccchHHHHHHHHHHHHHHHHH-HhcccccCCeeEEEeeccCCcccccccc
Confidence 997542222233333333322221 1111 1257899999999999998765
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=171.12 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=100.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... .....++++.+. ...+.+++. .+.||||||..+.... ..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~~ 91 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY-IADIEVDGKQVELALWDTAGQEDYDRL----------RP 91 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCC-EEEEEETTEEEEEEEECCCCSGGGTTT----------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceE-EEEEEECCEEEEEEEEECCCchhHHHH----------HH
Confidence 357999999999999999999997643 222233333333 334566664 6789999997544211 11
Q ss_pred HHHhhccEEEEEeccchh-----------hHH---hcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAV---EEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++. ... ..++|+++|+||+|+.+.....+.+.... +.+..+....++...
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence 356789999999999875 011 13899999999999986522111110000 011111111111112
Q ss_pred CC-CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~-~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+. +++++||++|.|++++|+.|.+.+
T Consensus 172 ~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 172 SAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 33 899999999999999999988754
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-20 Score=176.00 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCce-eeeEEEEEEEcC----eEEEEEecCCCcccccccCcchhHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLT-RDSVRVHFEYQG----RTVYLVDTAGWLQREKEKGPASLSVM 397 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT-~~~~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~ 397 (607)
..++|+++|.+|||||||+|+|++........+.+|+ .+.....+.+++ ..+.||||||+.+.. .
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~ 88 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK----------E 88 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH----------H
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH----------H
Confidence 3579999999999999999999976433444444444 366666677775 478899999964331 1
Q ss_pred HHHHHHhhccEEEEEeccchh----------hHH-h------cCCcEEEEEeCccCCC-CcCch-HHHHHHHHhcHHHHH
Q 007334 398 QSRKNLMRAHVVALVLDAEEV----------RAV-E------EGRGLVVIVNKMDLLS-GRQNS-ALYKRVKEAVPQEIQ 458 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~----------~~~-~------~~~p~ivv~NK~Dl~~-~~~~~-~~~~~~~~~~~~~~~ 458 (607)
....+++.+|++|+|+|++++ ... . .++|+++|+||+|+.+ ..... +.... +.
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~--------~~ 160 (208)
T 2yc2_C 89 QISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQD--------WA 160 (208)
T ss_dssp HHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHH--------HH
T ss_pred HHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHH--------HH
Confidence 233566789999999999876 011 1 4789999999999976 32211 11111 11
Q ss_pred hhCCCCCCCCEEEcccCC-CCCHHHHHHHHHHHHHH
Q 007334 459 TVIPQVTGIPVVFTSALE-GRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~-g~gv~~l~~~i~~~~~~ 493 (607)
+. .+++++++||++ |.|++++|+.|.+.+.+
T Consensus 161 ~~----~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 161 TT----NTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp HH----TTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred HH----cCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 11 247899999999 99999999999886643
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=169.85 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=100.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... ...+..|+.+.....+..++ ..+.||||||..+... ...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~ 93 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN----------VRP 93 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT----------TGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH----------HHH
Confidence 458999999999999999999997642 33444444444444444444 4678999999755421 112
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. ....+.|+++|+||+|+.+........... .+.+..+....++...
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 3567899999999998751 112378999999999997531000000000 0001111111111112
Q ss_pred CC-CEEEcccCCCCC-HHHHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRG-RIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~-~~v~iSA~~g~g-v~~l~~~i~~~~~~ 493 (607)
++ +++++||++|.| ++++|+.+.+.+..
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 55 899999999998 99999999887643
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=168.57 Aligned_cols=148 Identities=19% Similarity=0.169 Sum_probs=90.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+++|++.. ....+.+|+.+.....+..++. .+.||||||+.+... ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~ 74 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR----------LRP 74 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC--CC----------CBCCCC-------CEEECCCC-CTTTT----------TGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh----------hHH
Confidence 35899999999999999999999764 2334445544433333334443 456999999755421 112
Q ss_pred HHHhhccEEEEEeccchh-----------hHHh---cCCcEEEEEeCccCCCCcCchH--------HHHHHHHhcHHHHH
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RAVE---EGRGLVVIVNKMDLLSGRQNSA--------LYKRVKEAVPQEIQ 458 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~~~---~~~p~ivv~NK~Dl~~~~~~~~--------~~~~~~~~~~~~~~ 458 (607)
.+++.+|++++|+|+++. .... .++|+++|+||+|+.+...... ..+.. .++.
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~-----~~~~ 149 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQG-----EELK 149 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHH-----HHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHH-----HHHH
Confidence 456789999999999865 0111 3799999999999976421100 00110 1111
Q ss_pred hhCCCCCC-CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 459 TVIPQVTG-IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 459 ~~~~~~~~-~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+. .+ .+++++||++|.|++++|+.+.+.+
T Consensus 150 ~~----~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 150 KL----IGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HH----HTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HH----cCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11 13 4899999999999999999987753
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=180.55 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=109.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+|+|.+|||||||+|+|++..+. ... .|.+.....+...+..+.||||||++ .+...+..
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~----pT~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 228 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIV--TTI----PTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRH 228 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCE--EEE----EETTEEEEEEEETTEEEEEEECC---------------CCSHHH
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCC--Ccc----cccceEEEEEecCcEEEEEEECCCCH----------hHHHHHHH
Confidence 458999999999999999999987653 222 35556667777889999999999987 34445567
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-----CCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-----GDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-----~~~i~ 271 (607)
++..+|++|+|+|+++..+.... .+...+... ..+.|+++|+||+|+..... ....... ..... .++++
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~-~~~~~~~~~~~~~~~ 305 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDK-LGLHSLRHRNWYIQA 305 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHH-HTCTTCCSSCEEEEE
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHH-hchhhhhcCCCEEEE
Confidence 78999999999999987776652 233333322 24789999999999986532 1222212 11111 14789
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|+++|++.|.+.+.
T Consensus 306 vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 306 TCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CBTTTTBTHHHHHHHHHHHHT
T ss_pred EECCCCcCHHHHHHHHHHHHH
Confidence 999999999999999987654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=178.05 Aligned_cols=155 Identities=25% Similarity=0.278 Sum_probs=111.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCc-ccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL-QREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~~~~~~~~~~~i 403 (607)
..|+++|+||||||||+|+|++....++++.+++|++...+.+..++.++.+|||||+. ..... ........+..++
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~--l~~~~~~~~~~~l 86 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRA--INRLMNKAASSSI 86 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHH--HHHHHTCCTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhh--HHHHHHHHHHHHH
Confidence 47999999999999999999998877888999999998888888889999999999985 22100 0000011123456
Q ss_pred hhccEEEEEeccchh---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEccc
Q 007334 404 MRAHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 404 ~~ad~~llViD~~~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
..+|++++|+|+++. .....++|+++|+||+|+.... ....+.+ .++.+. ....+++++||
T Consensus 87 ~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~--~~~~~~l-----~~l~~~---~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEK--ADLLPHL-----QFLASQ---MNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCH--HHHHHHH-----HHHHTT---SCCSEEEECCT
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCccH--HHHHHHH-----HHHHHh---cCcCceEEEEC
Confidence 789999999998643 1122389999999999997621 1111111 122221 12237999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 007334 475 LEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 475 ~~g~gv~~l~~~i~~~~ 491 (607)
++|.|++++++.+...+
T Consensus 157 ~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp TTTTTHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999988654
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=174.96 Aligned_cols=173 Identities=10% Similarity=0.096 Sum_probs=120.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc-hhHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS-GSILDRTAGMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~ 197 (607)
...+|+|+|.+|||||||+|+|++.........+. .+|++.......+.+..+.||||||+...... ......+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999877544433332 27888888888889999999999999854322 12222334455
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCC---CCcEEEEec-CCCcccCCcCcH------HHHHHHHHhcCC-
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAP---QIKPIVAMN-KCESLHNGTGSL------AGAAAESLMLGF- 266 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~---~~p~ilV~N-K~D~~~~~~~~~------~~~~~~~~~~~~- 266 (607)
..++..+|++|+|+|++. .+..+..+.+++.+... ..|+++|+| |+|+........ .........++.
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 178 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGR 178 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCe
Confidence 567889999999999985 67776667777776422 357777777 999985321000 011112223321
Q ss_pred ---CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 267 ---GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 267 ---~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
...+++||++|.|++++++.|.+.+..
T Consensus 179 ~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 179 ICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 122889999999999999999887764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-19 Score=166.36 Aligned_cols=161 Identities=25% Similarity=0.338 Sum_probs=102.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCch-hHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSG-SILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~~~ 199 (607)
++|+++|.+|||||||+|+|++.... +...++ +|.+..... +. .+.+|||||+......+ .....+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~--~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPG--VTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTT--CTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCC--ccceeEEEe--cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 68999999999999999999987643 344555 666554433 22 79999999975322111 112234444455
Q ss_pred Hhhc-c---CEEEEEEecCCCCC-----------HhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc
Q 007334 200 VLAK-T---QFAIFMIDVRSGLH-----------PLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML 264 (607)
Q Consensus 200 ~~~~-a---d~vl~VvD~s~~~~-----------~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~ 264 (607)
++.. + +++++|+|.+.... ..+.++...+.. .+.|+++|+||+|+.... ..........+
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~---~~~~~~~~~~~ 149 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNV---QEVINFLAEKF 149 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCH---HHHHHHHHHHH
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcH---HHHHHHHHHHh
Confidence 5554 4 56666666542111 111122333333 378999999999998643 12233334445
Q ss_pred CCC------CcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 GFG------DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 ~~~------~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+.. .++++||++|.|++++++.|.+.+.+
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 150 EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 542 35999999999999999999887754
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-19 Score=182.64 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=117.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCee--EEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR--FKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
...+|+++|.+|||||||+|++++... ...... ++.+.....+..++.. +.+|||||+.. +...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~--t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~ 219 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGLED----------YDRL 219 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCC--CSEEEEEEEEEETTEEEEEEEEEECCCGG----------GTTT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC--CcccCC--cccceeEEEEEECCEEEEEEEEeCCCchh----------hhHH
Confidence 457999999999999999999997654 233333 6666666666666654 55999999872 2233
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHH
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESL 262 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~ 262 (607)
...++..+|++++|+|++++.+..+. .+...+....++.|+++|+||+|+... +..........+.
T Consensus 220 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 220 RPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence 44568899999999999987666553 244555555558999999999999753 2233344444555
Q ss_pred hcCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 263 MLGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 263 ~~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
..+..+++++||++|.|++++++.|.+.+
T Consensus 300 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 300 EIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 56655789999999999999999988755
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-19 Score=181.09 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
++++++...+..+|+|++|+|++++.+.....+. ++ ++|.++|+||+|+.+... .+.....+...|+ ++ .
T Consensus 10 ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~-~v-~ 79 (262)
T 3cnl_A 10 KAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKT--TKKWVEFFKKQGK-RV-I 79 (262)
T ss_dssp CTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTC-CE-E
T ss_pred HHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHH--HHHHHHHHHHcCC-eE-E
Confidence 3456778899999999999999998777653333 32 689999999999986321 1222333445566 56 9
Q ss_pred eecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCcee
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~ 351 (607)
+||++|.|+++|++.+.+.+ ++++++|.||||||||+|+|++.....
T Consensus 80 iSa~~~~gi~~L~~~l~~~~---------------------------------~~v~~vG~~~vGKSslin~l~~~~~~~ 126 (262)
T 3cnl_A 80 TTHKGEPRKVLLKKLSFDRL---------------------------------ARVLIVGVPNTGKSTIINKLKGKRASS 126 (262)
T ss_dssp ECCTTSCHHHHHHHHCCCTT---------------------------------CEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred EECCCCcCHHHHHHHHHHhh---------------------------------hheEEeCCCCCCHHHHHHHHhcccccc
Confidence 99999999999988765321 489999999999999999999987778
Q ss_pred ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 352 ~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+++.+|+|++.... .-+..+.||||||+...
T Consensus 127 ~~~~~g~T~~~~~~---~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 127 VGAQPGITKGIQWF---SLENGVKILDTPGILYK 157 (262)
T ss_dssp --------CCSCEE---ECTTSCEEESSCEECCC
T ss_pred cCCCCCCccceEEE---EeCCCEEEEECCCcccC
Confidence 89999999876422 22457899999998765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-19 Score=168.02 Aligned_cols=160 Identities=18% Similarity=0.242 Sum_probs=100.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-----CCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-----GDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
.+|+|+|.+|||||||+|+|++........... +++.+.....+.. ....+.+|||||++ ++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~-t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~ 71 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSA-TVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE----------EFYS 71 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHH----------HHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcce-eccEEeEEeeeccccCCCCceEEEEEecCCCH----------HHHH
Confidence 589999999999999999999853222222111 1334433333222 35689999999987 3444
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHh---hCCCCcEEEEecCCCcccCCcCcH--HHH-HHHHHhcCCC--
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK---HAPQIKPIVAMNKCESLHNGTGSL--AGA-AAESLMLGFG-- 267 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~---~~~~~p~ilV~NK~D~~~~~~~~~--~~~-~~~~~~~~~~-- 267 (607)
....++..+|++++|+|++++....+ .+..|+.. ..++.|+++|+||+|+........ ... .......++.
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~~s~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
T 2zej_A 72 THPHFMTQRALYLAVYDLSKGQAEVD-AMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAI 150 (184)
T ss_dssp TSHHHHHHSEEEEEEEEGGGCHHHHH-THHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEE
T ss_pred hhHHHccCCcEEEEEEeCCcchhHHH-HHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcch
Confidence 44567888999999999988632121 23344433 345789999999999875322110 011 1111224552
Q ss_pred -CcEEeecCCCC-ChHHHHHHhccchH
Q 007334 268 -DPIAISAETGL-GMTELYEALRPSVE 292 (607)
Q Consensus 268 -~~i~iSA~~g~-gi~eL~~~i~~~l~ 292 (607)
+++++||++|. |+++|++.|.+.+.
T Consensus 151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 151 RDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp EEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred hheEEEecccCchhHHHHHHHHHHHHh
Confidence 27899999996 99999999887664
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-19 Score=194.69 Aligned_cols=189 Identities=19% Similarity=0.233 Sum_probs=122.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeec--------c------CCCCceeeeeEEEEeeeC-----CeeEEEecCCCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVY--------N------TPDDHVTRDIREGLAKLG-----DLRFKVLDSAGL 180 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~--------~------~~~~~~T~~~~~~~~~~~-----~~~~~liDTpG~ 180 (607)
+++|+|+|++|+|||||+++|+.....+.. + ..| .|.......+.+. +..+.||||||+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerG--iTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERG--ITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC----------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhccc--ceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 568999999999999999999864321111 1 122 4444434444443 368999999999
Q ss_pred ccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHH
Q 007334 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE 260 (607)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~ 260 (607)
. ++...+..++..+|++|+|+|++++...+.......+... ++|+|+|+||+|+...... ......
T Consensus 82 ~----------dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~--~ipiIvViNKiDl~~a~~~--~v~~ei 147 (599)
T 3cb4_D 82 V----------DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM--DLEVVPVLNKIDLPAADPE--RVAEEI 147 (599)
T ss_dssp G----------GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT--TCEEEEEEECTTSTTCCHH--HHHHHH
T ss_pred h----------HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEeeeccCcccccHH--HHHHHH
Confidence 8 4555667788999999999999999988876654444444 7899999999999864321 111222
Q ss_pred HHhcCC--CCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEc---CCCC
Q 007334 261 SLMLGF--GDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVG---RPNV 335 (607)
Q Consensus 261 ~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG---~~nv 335 (607)
...+++ .+++++||++|.|+++|++.|.+.++... .....+++..+.. .+++
T Consensus 148 ~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~-----------------------~~~~~p~~alI~d~~~d~~~ 204 (599)
T 3cb4_D 148 EDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE-----------------------GDPEGPLQALIIDSWFDNYL 204 (599)
T ss_dssp HHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC-----------------------CCTTSCCEEEEEEEEEETTT
T ss_pred HHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc-----------------------ccccCCceeeeeeccccccc
Confidence 233444 35899999999999999999987765310 0012244444433 3889
Q ss_pred chhHHHHHhhcC
Q 007334 336 GKSTLLNALLQE 347 (607)
Q Consensus 336 GKSslin~l~~~ 347 (607)
|+.++++-+.|.
T Consensus 205 G~v~~~rV~sG~ 216 (599)
T 3cb4_D 205 GVVSLIRIKNGT 216 (599)
T ss_dssp EEEEEEEEEESC
T ss_pred cEEEEEEEEeCE
Confidence 998888776654
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=178.45 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=110.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.+||+++|.+|||||||+|+|++.....+++.+++|++.....+.+ ++..+.||||||+.+.. +.+.......+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~~~~ 77 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM-----ENYFTKQKDHI 77 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH-----HHHHTTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh-----hhhhhhHHHHH
Confidence 4799999999999999999999876566778899999988887776 56789999999975431 11111234467
Q ss_pred HhhccEEEEEeccchhh----------HH------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC-
Q 007334 403 LMRAHVVALVLDAEEVR----------AV------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT- 465 (607)
Q Consensus 403 i~~ad~~llViD~~~~~----------~~------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 465 (607)
++++|++|+|+|+++.. .. ..++|+++|+||+|+.+........+.. ..+..+......
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~----~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIM----MKNLSETSSEFGF 153 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHH----HHHHHHHHHTTTC
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHH----HHHHHHHHHHcCC
Confidence 78999999999998750 01 1389999999999998632221111111 111111111111
Q ss_pred -CCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 466 -GIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 466 -~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.++++++||++ .|+.++|..+.+.
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 37999999999 8899998887763
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=164.64 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=95.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecC-CCCceeeeEEEEEEE-----cCeEEEEEecCCCcccccccCcchhHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGP-EAGLTRDSVRVHFEY-----QGRTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~-~~gtT~~~~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
+||+++|++|||||||+|+|++........ .++++.+.....+.+ ....+.+|||||+.+... .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~ 72 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS----------T 72 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT----------T
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH----------h
Confidence 689999999999999999999853233332 333345544433332 355788999999644321 1
Q ss_pred HHHHHhhccEEEEEeccchhh------------H--HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEVR------------A--VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~~------------~--~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
...+++.+|++++|+|.+++. . ...+.|+++|+||+|+.+..... ....+..+.++..
T Consensus 73 ~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--------~~~~~~~~~~~~~ 144 (184)
T 2zej_A 73 HPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRK--------ACMSKITKELLNK 144 (184)
T ss_dssp SHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHH--------HHHHHHHHHTTTC
T ss_pred hHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhH--------HHHHHHHHHHHHh
Confidence 124567899999999998741 0 11378999999999997542110 0112233344444
Q ss_pred CCCC----EEEcccCCCC-CHHHHHHHHHHHHH
Q 007334 465 TGIP----VVFTSALEGR-GRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~----~v~iSA~~g~-gv~~l~~~i~~~~~ 492 (607)
.+++ ++++||++|. |++++++.|.+.+.
T Consensus 145 ~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 145 RGFPAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp TTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred cCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 4566 9999999997 99999998877654
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-20 Score=180.93 Aligned_cols=146 Identities=22% Similarity=0.227 Sum_probs=98.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.. ......++++.+.....+.+++ ..+.||||||..+..... .
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------~ 100 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT----------S 100 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS----------C
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH----------H
Confidence 45899999999999999999999753 4444456677777777777877 468899999976542111 1
Q ss_pred HHHhhccEEEEEeccchhh----------HH----hcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR----------AV----EEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~----------~~----~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|+++.. .. ..++|+++|+||+|+.+..... +... .+. ...
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~--------~~~----~~~ 168 (199)
T 3l0i_B 101 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAK--------EFA----DSL 168 (199)
T ss_dssp C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-C--------HHH----HTT
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHH--------HHH----HHc
Confidence 3567899999999998751 11 1378999999999997543211 0001 111 123
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++++||++|.|++++|+.|.+.+
T Consensus 169 ~~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 169 GIPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp TCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887644
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-19 Score=180.50 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=110.7
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhcccee-----eeccCCC--------------------Cceeeee------------
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREA-----LVYNTPD--------------------DHVTRDI------------ 160 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~-----~v~~~~~--------------------~~~T~~~------------ 160 (607)
...++|+|+|.+|||||||+|+|++..+. .+...|+ .++|++.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34689999999999999999999998753 2232332 0022220
Q ss_pred ------------EEEEeeeCCeeEEEecCCCCccccC---chhHHHHHHHHHHHHhhccCEEE-EEEecCCCCCHhHH-H
Q 007334 161 ------------REGLAKLGDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKTQFAI-FMIDVRSGLHPLDL-E 223 (607)
Q Consensus 161 ------------~~~~~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~ad~vl-~VvD~s~~~~~~~~-~ 223 (607)
........+..+.||||||+..... .......+...+..++..++.++ +|+|++++.+..+. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0000011246899999999974321 12232345667778888888666 79999987766653 3
Q ss_pred HHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhc--CCCCcEEeecCCCCChHHHHHHhccc
Q 007334 224 VGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLML--GFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 224 ~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~--~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
+.+++... +.|+++|+||+|+.................+ ++.+++++||++|.|++++++.|.+.
T Consensus 184 ~~~~~~~~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHCTT--CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhCCC--CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 55555443 7899999999999865432221111101111 22357899999999999999998763
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=174.83 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=112.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCC-ceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhH---HHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-LTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLS---VMQ 398 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g-tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~---~~~ 398 (607)
..++|+|+|++|||||||+|+|++...+..+..++ +|++.....+.+++..+.||||||+.+.... .+.+. ...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHH
Confidence 45899999999999999999999887666666665 8899888888999999999999998765321 11111 223
Q ss_pred HHHHHhhccEEEEEeccchh--------hHH-hc-----CCcEEEEEe-CccCCCCcCchHHHHHHH-HhcHHHHHhhCC
Q 007334 399 SRKNLMRAHVVALVLDAEEV--------RAV-EE-----GRGLVVIVN-KMDLLSGRQNSALYKRVK-EAVPQEIQTVIP 462 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~--------~~~-~~-----~~p~ivv~N-K~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~ 462 (607)
+..+++.+|++|+|+|++.. ..+ .. ..|.++|+| |+|+... .......... +.+ ..+...+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~-~~~~~~~~ 176 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKAL-SKLVAACG 176 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHH-HHHHHHTT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHH-HHHHHHhC
Confidence 34467889999999999752 111 11 568888887 9999743 2111110000 001 11112222
Q ss_pred CCC--CCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 463 QVT--GIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 463 ~~~--~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
... ..+ +++||++|.|++++|+.|.+.+...
T Consensus 177 ~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 177 GRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEecC-cccccccHHHHHHHHHHHHHHHHhC
Confidence 111 112 7899999999999999998877653
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=187.46 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=115.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccce------eeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRRE------ALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~------~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
++|+++|++|+|||||+|+|++... ......++ +|.+..+..+.+++..+.+|||||+. ++.
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~G--iTi~~~~~~~~~~~~~i~iiDtPGh~----------~~~ 87 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRG--ITIDIGFSAFKLENYRITLVDAPGHA----------DLI 87 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEETTEEEEECCCSSHH----------HHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCc--cEEecceEEEEECCEEEEEEECCChH----------HHH
Confidence 6899999999999999999998761 11233444 78887777777888999999999987 566
Q ss_pred HHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC--cHHHHHHHHHhc-CC--CCc
Q 007334 195 GMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG--SLAGAAAESLML-GF--GDP 269 (607)
Q Consensus 195 ~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~--~~~~~~~~~~~~-~~--~~~ 269 (607)
..+...+..+|++|+|+|++++...+..+.+.+++.. +.|.|+|+||+|+...... ...+....+... ++ .++
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc--CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 7778889999999999999999888887777777766 7899999999999853110 011112222233 22 378
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|.|+++|++.|.+.++
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999988765
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=180.62 Aligned_cols=151 Identities=21% Similarity=0.271 Sum_probs=111.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+|+++|.||||||||+|+|++.. ..+.+++++|.++....+.+++ ..+.||||||+.+..... ..+ ....++++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~--~~l-~~~fl~~i 234 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG--VGL-GHQFLRHI 234 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT--TTT-HHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCccccccc--chh-HHHHHHHH
Confidence 479999999999999999999774 4568899999998888888876 899999999976531111 111 13345677
Q ss_pred hhccEEEEEeccch---h-----------hHH-----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 404 MRAHVVALVLDAEE---V-----------RAV-----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 404 ~~ad~~llViD~~~---~-----------~~~-----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
..+|++|+|+|+++ . ... ...+|+++|+||+|+.... +..+ ++.+.+..
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~---e~~~--------~l~~~l~~- 302 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---ENLE--------AFKEKLTD- 302 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HHHH--------HHHHHCCS-
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH---HHHH--------HHHHHhhc-
Confidence 88999999999975 2 111 1378999999999997541 1111 22223321
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+++++||+++.|++++++.|.+.+.
T Consensus 303 -~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 303 -DYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp -CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred -CCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 268999999999999999998887653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=169.01 Aligned_cols=166 Identities=14% Similarity=0.199 Sum_probs=100.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCC--CceeeeEEEEEEEcCeEEEEEecCCCcccccccC--cchhHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA--GLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG--PASLSVMQ 398 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~--gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~--~~~~~~~~ 398 (607)
..++|+++|++|||||||+|+|+|... .....+ ++|.++....+.+++..+.||||||+.+...... .+.+ ...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~-~~~ 105 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI-IRC 105 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH-HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH-HHH
Confidence 458999999999999999999998764 444444 7889988888999999999999999876521110 1111 112
Q ss_pred HHHHHhhccEEEEEeccchh---------hH-----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEV---------RA-----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~---------~~-----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
...+.+.+|++|+|+|++.. .. ....+|+++|+||+|+.......+......+.+. ++.+.+
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~-~l~~~~--- 181 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQ-DLMDIF--- 181 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHH-HHHHHH---
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHH-HHHHHc---
Confidence 22344567999999998653 11 1235699999999999865433222211111111 111111
Q ss_pred CCCCEEEcccCCC-----CCHHHHHHHHHHHHHHHh
Q 007334 465 TGIPVVFTSALEG-----RGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 465 ~~~~~v~iSA~~g-----~gv~~l~~~i~~~~~~~~ 495 (607)
+..++++++..+ .|+.+|++.+.+.+.+..
T Consensus 182 -~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 182 -GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp -SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred -CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 345777766643 688999988888776543
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=164.46 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=98.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... ...+..+..+.....+.+++ ..+.||||||..+.... ..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~ 73 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------RP 73 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT----------GG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh----------HH
Confidence 358999999999999999999997642 22333333333344455554 46789999997544211 12
Q ss_pred HHHhhccEEEEEeccchh----h----------HHhcCCcEEEEEeCccCCCCcCchHHHHHHH----HhcHHHHHhhCC
Q 007334 401 KNLMRAHVVALVLDAEEV----R----------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVK----EAVPQEIQTVIP 462 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----~----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~~ 462 (607)
.++..+|++|+|+|+++. . ....+.|+++|+||+|+.+... ....+. +.+..+..+.++
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~v~~~~~~~~~ 150 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS---TLVELSNHRQTPVSYDQGANMA 150 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH---HHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchh---hHhhhhhcccCCCCHHHHHHHH
Confidence 356789999999999865 0 0114789999999999975311 000000 001111111111
Q ss_pred C-CCCCCEEEcccC-CCCCHHHHHHHHHHHH
Q 007334 463 Q-VTGIPVVFTSAL-EGRGRIAVMHQVIDTY 491 (607)
Q Consensus 463 ~-~~~~~~v~iSA~-~g~gv~~l~~~i~~~~ 491 (607)
. ....+++++||+ +|.|++++|+.+.+.+
T Consensus 151 ~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 151 KQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 1 113689999999 6899999999988754
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.1e-20 Score=177.27 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=103.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+++|++.. ....+.+++.+.....+.+++. .+.||||||+.+.. ....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~ 96 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD----------RLRP 96 (204)
Confidence 45899999999999999999999653 2344555666655555555554 45599999965432 1223
Q ss_pred HHHhhccEEEEEeccchhh-----------H---HhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEVR-----------A---VEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~-----------~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++++|+|+++.. . ...++|+++|+||+|+.+.....+..... .+.+..+....++...
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (204)
T 3th5_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176 (204)
Confidence 4667899999999998750 0 11278999999999997643211111110 0112222222333334
Q ss_pred CC-CEEEcccCCCCCHHHHHHHHHHH
Q 007334 466 GI-PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 466 ~~-~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+. +++++||++|.|++++|+.+.+.
T Consensus 177 ~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 177 GAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 54 89999999999999999988764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-18 Score=159.46 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=101.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc--cCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE--KGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~~~~~~~~~~ 402 (607)
++|+++|.+|||||||+|+|++.. +.++..+|+|.+.....+ . .+.+|||||+...... .+.+.+... ...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDE-IVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHH-HHHH
Confidence 589999999999999999999764 667778888887654433 3 7889999996543210 001222111 1122
Q ss_pred ----HhhccEEEEEeccchhh---------------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 403 ----LMRAHVVALVLDAEEVR---------------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 403 ----i~~ad~~llViD~~~~~---------------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
...+++++.|+|+.... ....++|+++|+||+|+.... .+..+.+ ...+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~----~~~~ 149 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFL----AEKF 149 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHH----HHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHH----HHHh
Confidence 44567888888876530 112479999999999998653 1112222 1111
Q ss_pred HhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 458 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
...+. ....+++++||++|.|++++|+.+.+.+.+
T Consensus 150 ~~~~~-~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 150 EVPLS-EIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp TCCGG-GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhh-ccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 10000 001358999999999999999999887654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.5e-18 Score=167.51 Aligned_cols=172 Identities=11% Similarity=0.116 Sum_probs=110.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCch-hHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSG-SILDRTAGMT 197 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~~~~~~~~~~ 197 (607)
..++|+|+|.+|||||||+|+|++.... ....+..++|.+.......+.+..+.||||||+....... .....+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998763 3334433488888888888899999999999998443221 2223344444
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhC---CCCcEEEEecCCCcccCCcCc------HHHHHHHHHhcCCCC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA---PQIKPIVAMNKCESLHNGTGS------LAGAAAESLMLGFGD 268 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~---~~~p~ilV~NK~D~~~~~~~~------~~~~~~~~~~~~~~~ 268 (607)
..++..+|++|+|+|++. .+..+..+..++.+.. ...|+++|+||+|+....... ...........+. .
T Consensus 107 ~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~-~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD-R 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS-S
T ss_pred HhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC-E
Confidence 555678899999999985 4445555555554321 146999999999998654321 1122333344554 5
Q ss_pred cEEeecCCC-----CChHHHHHHhccchHH
Q 007334 269 PIAISAETG-----LGMTELYEALRPSVED 293 (607)
Q Consensus 269 ~i~iSA~~g-----~gi~eL~~~i~~~l~~ 293 (607)
++.+++..+ .|+.+|++.|...+.+
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 666766543 6889999988776643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-18 Score=170.49 Aligned_cols=168 Identities=20% Similarity=0.265 Sum_probs=96.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccC-----CCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCch----h
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNT-----PDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSG----S 188 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~-----~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~----~ 188 (607)
.++|+++|.+|||||||+|+|++.+....... ...+++.+.....+..++ ..+.+|||||+....... .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 46899999999999999999998765433210 122244455444444455 389999999996432211 1
Q ss_pred HHHHHHHHHHHHhhc-------------cCEEEEEEecCC-CCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH
Q 007334 189 ILDRTAGMTANVLAK-------------TQFAIFMIDVRS-GLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 189 ~~~~~~~~~~~~~~~-------------ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
+......+...++.. +|++++++|.+. +....+.++.+++.. ++|+|+|+||+|+........
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~ 164 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQ 164 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHH
Confidence 111111222334443 778888886654 788888777777765 689999999999975422111
Q ss_pred --HHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 255 --AGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 255 --~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
......+...+. +++++||.+|+|++++++.|.+.+
T Consensus 165 ~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 165 FKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence 122233445566 688999999999999998887654
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-18 Score=189.81 Aligned_cols=117 Identities=20% Similarity=0.257 Sum_probs=92.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee---------------ecc------CCCCceeeeeEEEEeeeCCeeEEEecC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL---------------VYN------TPDDHVTRDIREGLAKLGDLRFKVLDS 177 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~---------------v~~------~~~~~~T~~~~~~~~~~~~~~~~liDT 177 (607)
..++|+|+|++|||||||+|+|+....++ +.+ ..+ +|.+.....+.+.+..+.||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~G--iTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRG--ISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHC--CSSSSSEEEEEETTEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCC--eeEEEeEEEEEeCCEEEEEEEC
Confidence 35789999999999999999997321111 111 133 5666666777788999999999
Q ss_pred CCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 178 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 178 pG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
||+. ++...+..++..+|++|+|+|++++....+..+...+... ++|+++|+||+|+...
T Consensus 90 PG~~----------df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 90 PGHA----------DFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCST----------TCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred CCch----------hHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccc
Confidence 9998 3445577889999999999999999999888777777765 7899999999999754
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=161.41 Aligned_cols=154 Identities=14% Similarity=0.154 Sum_probs=98.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++... . ..+..|+.+.....+.+++ ..+.||||||..+.... ..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~~ 94 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------RP 94 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-C-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT----------GG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-C-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH----------HH
Confidence 458999999999999999999998643 2 2333333333334455554 46789999997544210 12
Q ss_pred HHHhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHH----HhcHHHHHhhCC
Q 007334 401 KNLMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVK----EAVPQEIQTVIP 462 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~~ 462 (607)
.+++.+|++|+|+|+++.. ....+.|+++|+||+|+.+... ....+. +.+..+..+.++
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~v~~~~~~~~~ 171 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS---TLVELSNHRQTPVSYDQGANMA 171 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHH---HHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchh---hhhhhcccccCCCCHHHHHHHH
Confidence 3567899999999998650 0113789999999999974311 000000 001111111111
Q ss_pred C-CCCCCEEEcccC-CCCCHHHHHHHHHHHH
Q 007334 463 Q-VTGIPVVFTSAL-EGRGRIAVMHQVIDTY 491 (607)
Q Consensus 463 ~-~~~~~~v~iSA~-~g~gv~~l~~~i~~~~ 491 (607)
. ....+++++||+ +|.|++++|+.+.+.+
T Consensus 172 ~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 172 KQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 1 113589999999 6899999999988754
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-18 Score=187.35 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=108.7
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeee--------cc------CCCCceeeeeEEEEeeeC-----CeeEEEecCCC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALV--------YN------TPDDHVTRDIREGLAKLG-----DLRFKVLDSAG 179 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v--------~~------~~~~~~T~~~~~~~~~~~-----~~~~~liDTpG 179 (607)
..++|+|+|++|+|||||+++|+.....+. .+ ..| .|.......+.+. ...++||||||
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerG--ITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERG--ITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-------------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhccc--ceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 357899999999999999999986422111 01 112 3333322333332 26899999999
Q ss_pred CccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHH
Q 007334 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAA 259 (607)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~ 259 (607)
+. ++...+..++..+|++|+|+|++++.+.+.......+... +.|+|+|+||+|+..... .....
T Consensus 83 h~----------dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~--~ipiIvviNKiDl~~a~~---~~v~~ 147 (600)
T 2ywe_A 83 HV----------DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ--DLVIIPVINKIDLPSADV---DRVKK 147 (600)
T ss_dssp SG----------GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT--TCEEEEEEECTTSTTCCH---HHHHH
T ss_pred cH----------hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC--CCCEEEEEeccCccccCH---HHHHH
Confidence 98 4445566778999999999999999988876655544444 789999999999976432 22222
Q ss_pred -HHHhcCCC--CcEEeecCCCCChHHHHHHhccchHH
Q 007334 260 -ESLMLGFG--DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 260 -~~~~~~~~--~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
....+++. +++++||++|.|+++|++.|.+.++.
T Consensus 148 el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 148 QIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 22334553 48999999999999999999877653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=159.33 Aligned_cols=161 Identities=21% Similarity=0.207 Sum_probs=114.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe--eEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+...+.+.+++. .+.+|||||+... ....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t--~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------~~~~ 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KST--IGVEFATRSIQVDGKTIKAQIWDTAGQERY----------RRIT 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CC--CSCEEEEEEEEETTEEEEEEEEECSSGGGT----------TCCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCc--cceeEEEEEEEECCEEEEEEEEECCCchhh----------hhhh
Confidence 368999999999999999999997654322 222 444555666677764 6788999998732 2223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|+++..+..+. .+...+... ..+.|+++|+||+|+..............+...++ .++.+||+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~~d~Sal 150 (199)
T 2f9l_A 72 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETSAL 150 (199)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-eEEEEeCC
Confidence 4456789999999999876555442 233333332 24689999999999986554444444445555565 67899999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
++.|++++++.|.+.+.+.
T Consensus 151 ~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999998877653
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-19 Score=198.19 Aligned_cols=158 Identities=23% Similarity=0.308 Sum_probs=117.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.|+|+++|++|+|||||+|+|++.+.... ..++ +|.+.....+.+ .+..+.+|||||+.. +...+.
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~~~g--iT~~i~~~~v~~~~g~~i~~iDTPGhe~----------f~~~~~ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM-EAGG--ITQHIGAFLVSLPSGEKITFLDTPGHAA----------FSAMRA 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS-SSCC--BCCCTTSCCBCSSCSSCCBCEECSSSCC----------TTTSBB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc-cCCc--eeEEEeEEEEEeCCCCEEEEEECCChHH----------HHHHHH
Confidence 57899999999999999999998775433 3455 788877766665 567899999999873 333334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH----hcC-CCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL----MLG-FGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~----~~~-~~~~i~iS 273 (607)
.++..+|++++|+|++++..++..+.+..+... +.|+|+|+||+|+................ ..+ ..+++++|
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~--~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vS 148 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA--HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVS 148 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT--TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc--CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEE
Confidence 567889999999999999999988877777765 78999999999997543221111111110 011 11568999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|+++|++.|...++
T Consensus 149 AktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 149 ALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSSSCSSHHHHHHHHHHHT
T ss_pred CCCCCCchhHHHHHHHhhh
Confidence 9999999999999886543
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-18 Score=183.52 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=107.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee------------------------------eccCCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL------------------------------VYNTPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~------------------------------v~~~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|++....+ .....| +|.+.....+...+
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~G--iTi~~~~~~~~~~~ 110 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG--VTVSICTSHFSTHR 110 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CC--SSCCCCEEEEECSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcC--cceEeeeEEEecCC
Confidence 4689999999999999999998652111 111234 78888888888889
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-------CHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-------HPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-------~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
..+.||||||+. ++...+..++..+|++|+|+|++++. ..+..+....+... ...|+|+|+|
T Consensus 111 ~~~~iiDTPG~~----------~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviN 179 (483)
T 3p26_A 111 ANFTIVDAPGHR----------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMN 179 (483)
T ss_dssp CEEEEECCCCCG----------GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEE
T ss_pred ceEEEEECCCcH----------HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEE
Confidence 999999999998 56677788899999999999999873 34555555555554 2356999999
Q ss_pred CCCcccCCcCcHHHH----HHHHHhcCCC----CcEEeecCCCCChHHH
Q 007334 243 KCESLHNGTGSLAGA----AAESLMLGFG----DPIAISAETGLGMTEL 283 (607)
Q Consensus 243 K~D~~~~~~~~~~~~----~~~~~~~~~~----~~i~iSA~~g~gi~eL 283 (607)
|+|+........++. ...+..+++. +++++||++|.|++++
T Consensus 180 K~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 180 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred CcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 999986432222221 2223334442 5699999999999863
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-18 Score=177.57 Aligned_cols=123 Identities=21% Similarity=0.259 Sum_probs=90.6
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
+.+..+|+|||+||||||||||+|++.+ +.+.+.|+ +|++...+.+.+.+.++.++||||+......+. ....+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pf--tT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~---~~g~~ 142 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEF--TTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGR---GRGKQ 142 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCS--SCCCEEEEEEEETTEEEEEEECGGGCCC--------CHHHH
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCC--ceeeeeeEEEEeCCcEEEEEeCCCccCCchhhh---HHHHH
Confidence 3456799999999999999999999976 55788888 999999999999999999999999985433221 23456
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCc
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCES 246 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~ 246 (607)
++..++.||++++|+|++++....+ .+...|... ...+|.++++||+|.
T Consensus 143 ~l~~i~~ad~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 143 VIAVARTCNLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHHCSEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHhcCccccccccCccHHHHH-HHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 7788999999999999987543222 122223222 124566666777664
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=173.40 Aligned_cols=159 Identities=20% Similarity=0.249 Sum_probs=104.5
Q ss_pred Cce-EEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 324 PLQ-LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 324 ~~~-v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+++ |+++|++|||||||+|+|++.. ..+.+.+++|+|+....+.++|..+.+|||||+.+.......+.+ ..+...
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f--~~tl~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF--FVTLSE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH--HHHHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH--HHHHHH
Confidence 345 9999999999999999999875 577889999999999999999999999999997554222222222 345567
Q ss_pred HhhccEEEEEeccchhh------------HH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR------------AV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~~------------~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+..||++++|+|++++. .+ ..++|+|+|+||+|+.+.. .......+ ..+...+. ...
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~-----~~l~~~l~-~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLV-----EKLSKELY-SPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHH-----HHHHHHHC-SCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHH-----HHHHHHhc-CCC
Confidence 78899999999987531 11 1468999999999997642 11111111 01111110 113
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
.+++++||++|.|++++++.|.+.+.
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 46899999999999999998877654
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-18 Score=175.12 Aligned_cols=156 Identities=19% Similarity=0.227 Sum_probs=106.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEE--EEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY--LVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~--liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|.+|||||||++++++.. ....+.+|+.+.....+..++..+. ||||||+.+... ....
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~ 222 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR----------LRPL 222 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT----------TGGG
T ss_pred eeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhH----------HHHH
Confidence 5899999999999999999999763 3456677888877777778777655 999999755421 1123
Q ss_pred HHhhccEEEEEeccchhh-----------HH---hcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------AV---EEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++.. .. ..++|+++|+||+|+.+.....+.+... .+.+..+....++...+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 567899999999998751 01 1279999999999997542111110000 00111111111111124
Q ss_pred C-CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 I-PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~-~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
. +++++||++|.|++++|+.+.+.+
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3 899999999999999999988754
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=182.15 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=104.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc------eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR------VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVM 397 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~------~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 397 (607)
.++|+++|++|+|||||+|+|++.+. ...+..+|+|.+.....+.+++..+.||||||+.++ ..
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~----------~~ 88 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL----------IR 88 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH----------HH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH----------HH
Confidence 57999999999999999999998651 344567789988877778889999999999996432 13
Q ss_pred HHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 398 QSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.+..++..+|++|+|+|++++ .....++|+|+|+||+|+.+.. .++.+.+.+...+... ......
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~----~~~~~~~~l~~~l~~~-~~~~~~ 163 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTE----EIKRTEMIMKSILQST-HNLKNS 163 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHH----HHHHHHHHHHHHHHHS-SSGGGC
T ss_pred HHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccch----hHHHHHHHHHHHHhhh-cccccc
Confidence 345677889999999999874 2234589999999999998632 1222222222222211 011257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.|+++|++.|.+.+.
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhc
Confidence 9999999999999999998887654
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=181.41 Aligned_cols=150 Identities=22% Similarity=0.268 Sum_probs=104.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC------------------------------ceeecCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED------------------------------RVLVGPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~------------------------------~~~~~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+|+|++.. ........|+|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 35899999999999999999998651 122334568999988888888899
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcC-CcEEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEG-RGLVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~-~p~ivv~NK~ 434 (607)
.+.||||||+.++. ..+..++..||++|+|+|++++ .....+ .|+|+|+||+
T Consensus 112 ~~~iiDTPG~~~f~----------~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~ 181 (483)
T 3p26_A 112 NFTIVDAPGHRDFV----------PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 181 (483)
T ss_dssp EEEEECCCCCGGGH----------HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECG
T ss_pred eEEEEECCCcHHHH----------HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECc
Confidence 99999999975441 3445778899999999999873 111234 5699999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 484 (607)
|+.+.. ...++.+.+.+...+...-.....++++++||++|.|++++.
T Consensus 182 Dl~~~~--~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~ 229 (483)
T 3p26_A 182 DNVDWS--QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 229 (483)
T ss_dssp GGGTTC--HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSC
T ss_pred Ccccch--HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccC
Confidence 998632 223333333333222222111225689999999999998653
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=175.89 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=107.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCC------------CceeeeeE-----EEEeeeCCeeEEEecCCCCc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPD------------DHVTRDIR-----EGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~------------~~~T~~~~-----~~~~~~~~~~~~liDTpG~~ 181 (607)
...+|+++|++|+|||||+|+|++........... ...+.+.. ..........+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 35799999999999999999999843211000000 00000000 00001122689999999987
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHH
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAA 258 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~ 258 (607)
++...+...+..+|++++|+|++++. ..+..++...+.... ..|+++|+||+|+....... .++..
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~ 155 (403)
T 3sjy_A 87 ----------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIK 155 (403)
T ss_dssp ----------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHH
Confidence 56667778899999999999999987 556566666666552 35899999999998642110 11111
Q ss_pred HHHHhcC--CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 259 AESLMLG--FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 259 ~~~~~~~--~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
..+...+ ..+++++||++|.|+++|++.|.+.++
T Consensus 156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1111122 226899999999999999999987554
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=178.43 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=109.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeecc----------CCC--------------------CceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYN----------TPD--------------------DHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~----------~~~--------------------~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|++....+..+ .++ .+.|.+..+..+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 4689999999999999999998764222111 111 1256666666677788
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCC-cEEEEecCCCccc
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI-KPIVAMNKCESLH 248 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~-p~ilV~NK~D~~~ 248 (607)
..+.+|||||+. ++...+..++..+|++|+|+|++++...+..+....+... +. |+|+|+||+|+..
T Consensus 104 ~~~~iiDtpGh~----------~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~--~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 104 RKFIIADTPGHE----------QYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL--GIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEEECCCSG----------GGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred ceEEEEECCChH----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEEcCcCCc
Confidence 899999999988 4445566788999999999999999888877666666655 44 5899999999976
Q ss_pred CCcCcH----HHHHHHHHhcC--C--CCcEEeecCCCCChHHHHHH
Q 007334 249 NGTGSL----AGAAAESLMLG--F--GDPIAISAETGLGMTELYEA 286 (607)
Q Consensus 249 ~~~~~~----~~~~~~~~~~~--~--~~~i~iSA~~g~gi~eL~~~ 286 (607)
...... .+....+..++ . .+++++||++|.|++++++.
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~ 217 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER 217 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence 321111 11222334455 2 25799999999999986543
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=174.97 Aligned_cols=147 Identities=19% Similarity=0.138 Sum_probs=111.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|++|+|||||+|+|+. .+ +|.+..+..+.+.+..+.+|||||+. ++...+...+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~---------~g--iTi~~~~~~~~~~~~~i~iiDtPGh~----------~f~~~~~~~~ 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK---------KG--TSSDITMYNNDKEGRNMVFVDAHSYP----------KTLKSLITAL 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE---------EE--EESSSEEEEECSSSSEEEEEECTTTT----------TCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh---------CC--EEEEeeEEEEecCCeEEEEEECCChH----------HHHHHHHHHH
Confidence 899999999999999999981 23 67777777777788899999999998 4555566778
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcE-EEEec-CCCcccCCcCcH--HHHHHHHHhcCC--CCcEE--ee
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVAMN-KCESLHNGTGSL--AGAAAESLMLGF--GDPIA--IS 273 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~-ilV~N-K~D~~~~~~~~~--~~~~~~~~~~~~--~~~i~--iS 273 (607)
..+|++|+|+| +.+...+..+....+... +.|. |+|+| |+|+ ..+.... ++....+...++ .++++ +|
T Consensus 82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp HTCSEEEEEEC-TTCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred HHCCEEEEEEc-CCCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 99999999999 888888777777777665 6787 89999 9998 4211110 111111222222 26799 99
Q ss_pred cCC---CCChHHHHHHhccchHH
Q 007334 274 AET---GLGMTELYEALRPSVED 293 (607)
Q Consensus 274 A~~---g~gi~eL~~~i~~~l~~ 293 (607)
|++ |.|+++|++.|.+.++.
T Consensus 158 A~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 158 KSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccCcCCCCHHHHHHHHHhhccc
Confidence 999 99999999999887764
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-18 Score=174.93 Aligned_cols=173 Identities=18% Similarity=0.235 Sum_probs=106.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccce-----eeeccCCCC-ceeeee--------------------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRRE-----ALVYNTPDD-HVTRDI-------------------------------- 160 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~-----~~v~~~~~~-~~T~~~-------------------------------- 160 (607)
..|+|+|+|.+|||||||+|+|++... ..+...|+. .++++.
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 468999999999999999999999875 333333310 022210
Q ss_pred ------E------------EE-EeeeCCeeEEEecCCCCccccC---chhHHHHHHHHHHHHhhccCEEEEEEec-CCCC
Q 007334 161 ------R------------EG-LAKLGDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKTQFAIFMIDV-RSGL 217 (607)
Q Consensus 161 ------~------------~~-~~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~ad~vl~VvD~-s~~~ 217 (607)
. .- .....+..+.+|||||+..... .......+...+..++..+|++++|+|+ +.+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 00 0111346899999999974210 0122234667788899999999999997 4455
Q ss_pred CHhH-HHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh--cCCCCcEEeecCC---CCChHHHHHHhccch
Q 007334 218 HPLD-LEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM--LGFGDPIAISAET---GLGMTELYEALRPSV 291 (607)
Q Consensus 218 ~~~~-~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~--~~~~~~i~iSA~~---g~gi~eL~~~i~~~l 291 (607)
...+ ..+.+++... +.|+++|+||+|+................. .++.+++.+||.+ +.|+.++++.+.+.+
T Consensus 183 ~~~~~~~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 183 ANSDALQLAKEVDPE--GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp TTCSHHHHHHHHCSS--CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCCC--CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 5444 3567777654 789999999999986543211111110111 1222334555666 899999999988777
Q ss_pred HH
Q 007334 292 ED 293 (607)
Q Consensus 292 ~~ 293 (607)
+.
T Consensus 261 ~~ 262 (315)
T 1jwy_B 261 KN 262 (315)
T ss_dssp HT
T ss_pred hC
Confidence 53
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-18 Score=180.10 Aligned_cols=159 Identities=18% Similarity=0.094 Sum_probs=115.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccc--------eeee--cc------CCCCceeeeeEEEEeeeCCeeEEEecCCCCccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRR--------EALV--YN------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~--------~~~v--~~------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~ 183 (607)
..+|+++|++|+|||||+|+|++.. +... .+ ..+ +|.+.....+...+..+.+|||||+.
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~G--iTi~~~~~~~~~~~~~~~iiDtpG~~-- 86 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG--ITINTAHVEYETAKRHYSHVDCPGHA-- 86 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHT--CCCSCEEEEEECSSCEEEEEECCCSG--
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcC--CCEEeeeeEeccCCeEEEEEECCChH--
Confidence 4689999999999999999999731 0000 00 233 66676666666678899999999998
Q ss_pred cCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcC---cHHHHHH
Q 007334 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTG---SLAGAAA 259 (607)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~---~~~~~~~ 259 (607)
++...+..++..+|++|+|+|++++...+..++...+... +.| +++|+||+|+...... ...+...
T Consensus 87 --------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~ 156 (405)
T 2c78_A 87 --------DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRD 156 (405)
T ss_dssp --------GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence 4556667788999999999999999888877777777665 678 8899999999852110 0112223
Q ss_pred HHHhcCC----CCcEEeecCCCCC------------------hHHHHHHhccchH
Q 007334 260 ESLMLGF----GDPIAISAETGLG------------------MTELYEALRPSVE 292 (607)
Q Consensus 260 ~~~~~~~----~~~i~iSA~~g~g------------------i~eL~~~i~~~l~ 292 (607)
.+...++ .+++++||++|.| +++|++.|.+.++
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 3444554 3689999999987 6677777665443
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=168.74 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=87.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecC-------CCCceeeeEEEEEEEcCe--EEEEEecCCCcccccc-cCcch
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGP-------EAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKE-KGPAS 393 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~-------~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~-~~~~~ 393 (607)
.++|+++|.+|+|||||+|+|++.+...... .++++.+.....+..++. .+.||||||+.+.... .....
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 4799999999999999999999887655443 455566666555555554 8899999998655211 11111
Q ss_pred ---hHHHHHHHHHhh-------------ccEEEEEeccch-h---------hHHhcCCcEEEEEeCccCCCCcCchHHHH
Q 007334 394 ---LSVMQSRKNLMR-------------AHVVALVLDAEE-V---------RAVEEGRGLVVIVNKMDLLSGRQNSALYK 447 (607)
Q Consensus 394 ---~~~~~~~~~i~~-------------ad~~llViD~~~-~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~ 447 (607)
+...+...++.. +|++++++|.+. + ..+..++|+|+|+||+|+....+..
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~---- 163 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQ---- 163 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHH----
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHH----
Confidence 111222334443 789999997654 2 2223489999999999997543222
Q ss_pred HHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 448 RVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
...+.+...+.. .+++++++||++|.|++++++.+.+
T Consensus 164 ~~~~~i~~~l~~-----~~i~v~~~sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 164 QFKKQIMKEIQE-----HKIKIYEFPETDDEEENKLVKKIKD 200 (274)
T ss_dssp HHHHHHHHHHHH-----TTCCCCCC-----------CHHHHH
T ss_pred HHHHHHHHHHHH-----cCCeEEcCCCCCChhHHHHHHHHhc
Confidence 222222223222 3678899999999999988877655
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=176.36 Aligned_cols=160 Identities=19% Similarity=0.094 Sum_probs=110.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee--ccCCCCceeeeeEEEEeeeC-----------------------CeeEEE
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV--YNTPDDHVTRDIREGLAKLG-----------------------DLRFKV 174 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v--~~~~~~~~T~~~~~~~~~~~-----------------------~~~~~l 174 (607)
..+|+++|++|+|||||+++|++...... ...++ +|.+..+....+. ...+.+
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~g--iTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRG--ITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSC--SSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCC--cEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 46899999999999999999997532211 11234 5665544433321 167999
Q ss_pred ecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC-
Q 007334 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG- 252 (607)
Q Consensus 175 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~- 252 (607)
|||||+. ++.......+..+|++|+|+|++++. ..+..+.+..+.... ..|+++|+||+|+......
T Consensus 88 iDtPGh~----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 88 IDAPGHE----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-QKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EECSSHH----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHH
T ss_pred EECCChH----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-CCcEEEEEECccCCCHHHHH
Confidence 9999987 56666677788999999999999986 666666555555542 3579999999999864210
Q ss_pred -cHHHHHHHHHhc--CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 253 -SLAGAAAESLML--GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 253 -~~~~~~~~~~~~--~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
..++....+... ...+++++||++|.|+++|++.|.+.++
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 111111122111 1227899999999999999999987554
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=174.06 Aligned_cols=160 Identities=16% Similarity=0.071 Sum_probs=103.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeec--cCCCCceeeeeEEEEeee---------------C--------CeeEEE
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVY--NTPDDHVTRDIREGLAKL---------------G--------DLRFKV 174 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~--~~~~~~~T~~~~~~~~~~---------------~--------~~~~~l 174 (607)
..+|+++|++|+|||||+++|++....... ..++ .|.+..+....+ . ...+.+
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~g--iTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRG--ISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------C--CCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCC--cEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 578999999999999999999975321111 1233 565554333222 1 167999
Q ss_pred ecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcC-
Q 007334 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTG- 252 (607)
Q Consensus 175 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~- 252 (607)
|||||+. ++.......+..+|++|+|+|++++. ..+..+.+..++.. ...|+++|+||+|+......
T Consensus 86 iDtPGh~----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 86 VDSPGHE----------TLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp EECSSHH----------HHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTT
T ss_pred EECCCHH----------HHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHH
Confidence 9999987 55555666778889999999999986 66665555555544 23589999999999865421
Q ss_pred -cHHHHHHHHHhc--CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 253 -SLAGAAAESLML--GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 253 -~~~~~~~~~~~~--~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
..++....+... ...+++++||++|.|+++|++.|.+.++
T Consensus 155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 122222222221 1226899999999999999999987553
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-19 Score=195.15 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=90.6
Q ss_pred ccCCCEEEEecCCCCchhHHHHHhhccceeeecc------------------------------CCCCceeeeeEEEEee
Q 007334 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYN------------------------------TPDDHVTRDIREGLAK 166 (607)
Q Consensus 117 ~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~------------------------------~~~~~~T~~~~~~~~~ 166 (607)
.+...+|+|+|++|+|||||+|+|++....+..+ .+| +|.+.....+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~G--iTid~~~~~~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARG--VTMDVASTTFE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCC--eeEEeeEEEEE
Confidence 3445789999999999999999998643322211 234 88888888888
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-------CHhHHHHHHHHHhhCCCCc-EE
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-------HPLDLEVGKWLRKHAPQIK-PI 238 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-------~~~~~~~~~~l~~~~~~~p-~i 238 (607)
..+..+.||||||+.... ..+...+..+|++|+|+|++++. ..+..+....+... ++| +|
T Consensus 252 ~~~~~i~iiDTPGh~~f~----------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iI 319 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFI----------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIV 319 (592)
T ss_dssp -------CCEEESSSEEE----------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEE
T ss_pred eCCeEEEEEECCChHHHH----------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEE
Confidence 888999999999998332 22334567899999999999864 55666666666665 566 89
Q ss_pred EEecCCCcccCCcCcHHH---H-HHHH-HhcCCC----CcEEeecCCCCChH--------------HHHHHhccch
Q 007334 239 VAMNKCESLHNGTGSLAG---A-AAES-LMLGFG----DPIAISAETGLGMT--------------ELYEALRPSV 291 (607)
Q Consensus 239 lV~NK~D~~~~~~~~~~~---~-~~~~-~~~~~~----~~i~iSA~~g~gi~--------------eL~~~i~~~l 291 (607)
+|+||+|+.......... . ...+ ...++. +++++||++|.|+. .|++.|...+
T Consensus 320 vviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 320 VSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred EEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 999999997622111111 1 1222 234553 57999999999998 6777766543
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=175.13 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=116.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcccee----e-----------eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREA----L-----------VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~----~-----------v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 185 (607)
.+|+++|++|+|||||+++|++.... . .....+ .|.+.....+...+..+.+|||||+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g--iTi~~~~~~~~~~~~~~~iiDtpG~~---- 77 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARG--ITINAAHVEYSTAARHYAHTDCPGHA---- 77 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETT--EEEECEEEEEECSSCEEEEEECSSHH----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcC--cEEEeeeEEeccCCeEEEEEECCChH----
Confidence 57999999999999999999974110 0 001234 67777666666677899999999998
Q ss_pred chhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcC---cHHHHHHHH
Q 007334 186 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTG---SLAGAAAES 261 (607)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~---~~~~~~~~~ 261 (607)
++...+..++..+|++|+|+|++++...+..+....++.. +.| +++|+||+|+...... ...+....+
T Consensus 78 ------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 78 ------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp ------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 5666777888999999999999999888877766777665 678 6899999999752110 011222334
Q ss_pred HhcCC----CCcEEeecCCCCC----------hHHHHHHhccchH
Q 007334 262 LMLGF----GDPIAISAETGLG----------MTELYEALRPSVE 292 (607)
Q Consensus 262 ~~~~~----~~~i~iSA~~g~g----------i~eL~~~i~~~l~ 292 (607)
...++ .+++++||++|.| +++|++.|.+.++
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 44554 2679999999774 8888888876554
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=170.32 Aligned_cols=109 Identities=21% Similarity=0.236 Sum_probs=88.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..+|+|||.||||||||+|+|++.. ..++++|+||+++..+.+.+.+.+++|+||||+.+... .+ .-...+++..+
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~-~~--~~~g~~~l~~i 147 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK-DG--RGRGKQVIAVA 147 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC--------CHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch-hh--hHHHHHHHHHH
Confidence 3589999999999999999999875 78899999999999999999999999999999976521 11 11235667889
Q ss_pred hhccEEEEEeccchh----h-----HH-----hcCCcEEEEEeCccC
Q 007334 404 MRAHVVALVLDAEEV----R-----AV-----EEGRGLVVIVNKMDL 436 (607)
Q Consensus 404 ~~ad~~llViD~~~~----~-----~~-----~~~~p~ivv~NK~Dl 436 (607)
+.||++++|+|++++ . .. ...+|.++++||+|.
T Consensus 148 ~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999999986 0 00 125688888999886
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=168.43 Aligned_cols=180 Identities=16% Similarity=0.173 Sum_probs=111.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc-----eeecCCC---Cceee----------------------------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR-----VLVGPEA---GLTRD---------------------------------- 361 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~-----~~~~~~~---gtT~~---------------------------------- 361 (607)
.++|+|+|.+|||||||+|+|+|... ..++..| .++++
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 36899999999999999999998865 3344444 22222
Q ss_pred ----------------eEEEEEEE-cCeEEEEEecCCCccccc---ccCcchhHHHHHHHHHhhccEEEEEeccch-h--
Q 007334 362 ----------------SVRVHFEY-QGRTVYLVDTAGWLQREK---EKGPASLSVMQSRKNLMRAHVVALVLDAEE-V-- 418 (607)
Q Consensus 362 ----------------~~~~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~i~~ad~~llViD~~~-~-- 418 (607)
.....+.. ++.++.||||||+.+... ...........+..++..+|++++|+|++. .
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 00111111 346899999999865311 112333445667789999999999999732 2
Q ss_pred ---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCC---CCCHHHHH
Q 007334 419 ---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALE---GRGRIAVM 484 (607)
Q Consensus 419 ---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~---g~gv~~l~ 484 (607)
.....++|+++|+||+|+.+.... ..+ .+...+.. ..+++++.+||.+ +.|+.+++
T Consensus 184 ~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~--~~~--------~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~ 253 (315)
T 1jwy_B 184 NSDALQLAKEVDPEGKRTIGVITKLDLMDKGTD--AME--------VLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESL 253 (315)
T ss_dssp TCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCC--CHH--------HHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred hhHHHHHHHHhCCCCCcEEEEEcCcccCCcchH--HHH--------HHhCCCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence 111247899999999999865321 111 11111111 2234455566666 89999999
Q ss_pred HHHHHHHHH------HhcCCChHHHHHHHHHHHHh
Q 007334 485 HQVIDTYQK------WCLRLPTSRLNRWLRKVMGR 513 (607)
Q Consensus 485 ~~i~~~~~~------~~~~~~~~~l~~~l~~~~~~ 513 (607)
+.+.+.+.. +..+.++..++.++++.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~ 288 (315)
T 1jwy_B 254 KSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMF 288 (315)
T ss_dssp HHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccccchhccCHHHHHHHHHHHHHH
Confidence 988776543 33466788898888877654
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=182.67 Aligned_cols=106 Identities=23% Similarity=0.345 Sum_probs=83.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee---------------------ecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL---------------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~---------------------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
..+|+|+|++|+|||||+|+|++....+ .....|+|.+.....+.+.+..+.||||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4689999999999999999997322111 1123677888777888999999999999998
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
.++. ..+..+++.+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 93 ~df~----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 93 ADFT----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTCC----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred hhHH----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 6653 2356788899999999999975 233468999999999999754
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-18 Score=188.43 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=111.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeecc------------------------------CCCCceeeeeEEEEeeeC
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYN------------------------------TPDDHVTRDIREGLAKLG 168 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~------------------------------~~~~~~T~~~~~~~~~~~ 168 (607)
...+|++||++|||||||+|+|++....+..+ .+| +|.+.....+...
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~G--iTid~~~~~~~~~ 243 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERG--VTVSICTSHFSTH 243 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTT--TCCSCSCCEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCC--eeEeeeeEEEecC
Confidence 35799999999999999999999764433221 134 7888888888888
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC-------CCHhHHHHHHHHHhhCCCCcEEEEe
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-------LHPLDLEVGKWLRKHAPQIKPIVAM 241 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-------~~~~~~~~~~~l~~~~~~~p~ilV~ 241 (607)
+..+.||||||+. ++...+..++..+|++|+|+|++++ ...+..+....+... ...|+|+|+
T Consensus 244 ~~~~~iiDTPG~e----------~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-gi~~iIVVv 312 (611)
T 3izq_1 244 RANFTIVDAPGHR----------DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAM 312 (611)
T ss_dssp SCEEEEEECCSSS----------CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-TCCEEEEEE
T ss_pred CceEEEEECCCCc----------ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-CCCeEEEEE
Confidence 9999999999998 5667777889999999999999875 234444555555544 124599999
Q ss_pred cCCCcccCCcCcHH----HHHHHHHhcCC----CCcEEeecCCCCChHHHH
Q 007334 242 NKCESLHNGTGSLA----GAAAESLMLGF----GDPIAISAETGLGMTELY 284 (607)
Q Consensus 242 NK~D~~~~~~~~~~----~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~ 284 (607)
||+|+......... .....+..+|+ .+++++||++|.|++++.
T Consensus 313 NKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 313 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp ECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred ecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 99999863221111 12223334454 267999999999998763
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=186.23 Aligned_cols=150 Identities=22% Similarity=0.277 Sum_probs=106.0
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecC------------------------------CCCceeeeEEEEEEEcC
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP------------------------------EAGLTRDSVRVHFEYQG 371 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~------------------------------~~gtT~~~~~~~~~~~~ 371 (607)
...++|+++|++|+|||||+|+|++.......+ .+|+|++.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346899999999999999999999764333221 36899998888888899
Q ss_pred eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCC-cEEEEEeC
Q 007334 372 RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGR-GLVVIVNK 433 (607)
Q Consensus 372 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~-p~ivv~NK 433 (607)
..+.||||||+.++. ..+..++..||++|+|+|++++ .....+. |+|+|+||
T Consensus 245 ~~~~iiDTPG~e~f~----------~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNK 314 (611)
T 3izq_1 245 ANFTIVDAPGHRDFV----------PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 314 (611)
T ss_dssp CEEEEEECCSSSCHH----------HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred ceEEEEECCCCcccH----------HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEec
Confidence 999999999975541 3344567789999999999873 1112354 59999999
Q ss_pred ccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 434 MDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 434 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
+|+.+.. ...++.+.+.+...+...-.....++++++||++|.|+.++
T Consensus 315 iDl~~~~--~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 315 MDNVDWS--QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTTC--HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ccccchh--HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 9998632 22233333333322222211122578999999999999765
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=184.92 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=102.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEE------Eee----eCCeeEEEecCCCCccccCchhH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREG------LAK----LGDLRFKVLDSAGLETEATSGSI 189 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~------~~~----~~~~~~~liDTpG~~~~~~~~~~ 189 (607)
..+|++||.+|||||||+|+|++..+... ..+. +..+.... .+. ..+..+.+|||||++...
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~-~~~t--~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~----- 112 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPK-ESQT--HGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMH----- 112 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTT-----
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCc--cceEEEEeccccccceeecCCCceEEEEEEECCcHHHHH-----
Confidence 36899999999999999999998764211 1111 11111111 111 125789999999987322
Q ss_pred HHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCc
Q 007334 190 LDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 190 ~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 269 (607)
.....++..+|++|+|+|+++. .....+...+....++.|+|+|+||+|+........+.....+...+. ++
T Consensus 113 -----~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~ 184 (535)
T 3dpu_A 113 -----ASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIEN-RF 184 (535)
T ss_dssp -----TTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTT-CE
T ss_pred -----HHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCC-ce
Confidence 2234567789999999999864 222345666666656799999999999987655544444445555565 68
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|.|+++|++.|.+.+.
T Consensus 185 ~~vSA~~g~gi~eL~~~l~~~~~ 207 (535)
T 3dpu_A 185 HRISCKNGDGVESIAKSLKSAVL 207 (535)
T ss_dssp EECCC-----CTTHHHHHHHHHT
T ss_pred EEEecCcccCHHHHHHHHHHHHh
Confidence 99999999999999999987664
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-18 Score=187.29 Aligned_cols=149 Identities=22% Similarity=0.241 Sum_probs=101.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce------------------------------eecCCCCceeeeEEEEEEEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~~ 373 (607)
.++|+++|++|+|||||+|+|++.... ......|+|.+.....+..++..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 479999999999999999999864100 01113688888777777888899
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhh-----------------HHhcCCc-EEEEEeCcc
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVR-----------------AVEEGRG-LVVIVNKMD 435 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~-----------------~~~~~~p-~ivv~NK~D 435 (607)
+.||||||+.++. ..+..++..+|++|+|+|++++. ....++| +|+|+||+|
T Consensus 87 ~~iiDtPGh~~f~----------~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D 156 (458)
T 1f60_A 87 VTVIDAPGHRDFI----------KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 156 (458)
T ss_dssp EEEEECCCCTTHH----------HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred EEEEECCCcHHHH----------HHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence 9999999975431 23446678899999999998641 1124666 999999999
Q ss_pred CCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHH
Q 007334 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVM 484 (607)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~ 484 (607)
+.+.. .+.++.+.+.+...+...-.....++++++||++|.|+.++.
T Consensus 157 l~~~~--~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 157 SVKWD--ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp GGTTC--HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred cccCC--HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 97421 122223323232222221111113789999999999997654
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=174.92 Aligned_cols=145 Identities=23% Similarity=0.244 Sum_probs=99.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC---C----ce-e--------ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE---D----RV-L--------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~---~----~~-~--------~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..++|+++|++|+|||||+|+|++. . .+ . .....|+|.+.....+...+..+.||||||+.++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 3579999999999999999999973 0 00 0 01246888888777777778899999999976541
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
..+..++..+|++|+|+|++++ .....++| +|+|+||+|+.+.. +.++.+.+.+..
T Consensus 90 ----------~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~---~~~~~~~~~~~~ 156 (405)
T 2c78_A 90 ----------KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP---ELLDLVEMEVRD 156 (405)
T ss_dssp ----------HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH---HHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH---HHHHHHHHHHHH
Confidence 3345678899999999999875 22235788 89999999998531 122222222222
Q ss_pred HHHhhCCCCCCCCEEEcccCCCCCH
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGRGR 480 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~gv 480 (607)
.+...-.....+|++++||++|.|+
T Consensus 157 ~l~~~~~~~~~~~~i~~SA~~g~~v 181 (405)
T 2c78_A 157 LLNQYEFPGDEVPVIRGSALLALEQ 181 (405)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHHH
T ss_pred HHHHhcccccCCCEEEccHHHhhhh
Confidence 2221111112479999999999874
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-17 Score=173.79 Aligned_cols=152 Identities=17% Similarity=0.143 Sum_probs=96.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCcee--------------eeEE-----EEEEEcCeEEEEEecCCCc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR--------------DSVR-----VHFEYQGRTVYLVDTAGWL 383 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~--------------~~~~-----~~~~~~~~~~~liDTpG~~ 383 (607)
..++|+++|++|+|||||+|+|++........++.++. +... .........+.||||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 45899999999999999999999753211111111110 0000 0001122688999999965
Q ss_pred ccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHh-cCCcEEEEEeCccCCCCcCchHHHHHHHH
Q 007334 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVE-EGRGLVVIVNKMDLLSGRQNSALYKRVKE 451 (607)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 451 (607)
++. ..+..++..+|++|+|+|++++ .... ..+|+|+|+||+|+.+.......++.+
T Consensus 87 ~~~----------~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i-- 154 (403)
T 3sjy_A 87 VLM----------ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI-- 154 (403)
T ss_dssp GGH----------HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHH--
T ss_pred HHH----------HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHH--
Confidence 431 3345677889999999999875 1111 235999999999998653222222222
Q ss_pred hcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 452 AVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.+.+.. ....+++++++||++|.|+++|++.|.+.
T Consensus 155 --~~~l~~--~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 155 --KQFTKG--TWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp --HHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --HHHHHh--hCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 111111 11236799999999999999999888764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-17 Score=153.35 Aligned_cols=157 Identities=22% Similarity=0.231 Sum_probs=110.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCee--EEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR--FKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|+|.+|||||||+|+|++....... .+. ++.+...+.+.+++.. +.+|||+|+.... ..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t--~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----------~~~ 95 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KST--IGVEFATRSIQVDGKTIKAQIWDTAGLERYR----------AIT 95 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSC-CCC--CSEEEEEEEEEETTEEEEEEEEEECSCCSSS----------CCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCc--cceEEEEEEEEECCEEEEEEEEECCCCcchh----------hhh
Confidence 468999999999999999999987653322 222 5556666777777754 5679999987322 223
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..++++++|+|.++..+..+. .+...+.+. ..+.|+++|+||+|+..............+...++ .++.+||+
T Consensus 96 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~ld~Sal 174 (191)
T 1oix_A 96 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL-SFIETSAL 174 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEEeCC
Confidence 4456789999999999875544432 123333332 24689999999999986544444444455555565 67889999
Q ss_pred CCCChHHHHHHhccc
Q 007334 276 TGLGMTELYEALRPS 290 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~ 290 (607)
++.|++++++.|.+.
T Consensus 175 d~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 175 DSTNVEAAFQTILTE 189 (191)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988754
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-17 Score=172.36 Aligned_cols=153 Identities=19% Similarity=0.181 Sum_probs=101.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc------e---------eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR------V---------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~------~---------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 388 (607)
.++|+++|++|+|||||+++|++... . ......|+|.+.....+...+..+.||||||+.++
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f--- 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY--- 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH---
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH---
Confidence 47999999999999999999997310 0 01125678888766666667889999999996443
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
. ..+..++..+|++|+|+|++++ .....++| +|+|+||+|+.+.. +.++.+.+.+.+.+
T Consensus 80 ------~-~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~---~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 80 ------V-KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS---EMVELVELEIRELL 149 (397)
T ss_dssp ------H-HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH---HHHHHHHHHHHHHH
T ss_pred ------H-HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH---HHHHHHHHHHHHHH
Confidence 1 2344567789999999999885 12235788 78999999997531 12222222222222
Q ss_pred HhhCCCCCCCCEEEcccCCCCC----------HHHHHHHHHH
Q 007334 458 QTVIPQVTGIPVVFTSALEGRG----------RIAVMHQVID 489 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~g----------v~~l~~~i~~ 489 (607)
...-.....+|++++||++|.| +.+|++.+.+
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~ 191 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT 191 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred HHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence 2111111247999999999875 5556555543
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=167.16 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=103.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|++|+|||||+++|+ ..|+|.+.....+++++..+.||||||+.++. ..+..++..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~----------~~~~~~~~~ 83 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL----------KSLITALNI 83 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH----------HHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH----------HHHHHHHHH
Confidence 89999999999999999998 44677777777777888899999999976541 234456788
Q ss_pred ccEEEEEeccchh----------hHHhcCCcE-EEEEe-CccCCCCcCchHHHHHHHHhcHHHHHhhCCCC--CCCCEEE
Q 007334 406 AHVVALVLDAEEV----------RAVEEGRGL-VVIVN-KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV--TGIPVVF 471 (607)
Q Consensus 406 ad~~llViD~~~~----------~~~~~~~p~-ivv~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~ 471 (607)
+|++|+|+| +.+ .....++|. |+++| |+|+ +.. ..+.. .+++.+.+... ..+|+++
T Consensus 84 aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~----~~~~~----~~~i~~~l~~~~~~~~~ii~ 153 (370)
T 2elf_A 84 SDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMH----AIDEL----KAKLKVITSGTVLQDWECIS 153 (370)
T ss_dssp CSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHH----HHHHH----HHHHHHHTTTSTTTTCEEEE
T ss_pred CCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHH----HHHHH----HHHHHHHHHhcCCCceEEEe
Confidence 999999999 654 122357888 99999 9999 431 11111 12333333322 3579999
Q ss_pred --cccCC---CCCHHHHHHHHHHHHHH
Q 007334 472 --TSALE---GRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 472 --iSA~~---g~gv~~l~~~i~~~~~~ 493 (607)
+||++ |.|++++++.|.+.+..
T Consensus 154 ~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 154 LNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cccccccCcCCCCHHHHHHHHHhhccc
Confidence 99999 99999999998877643
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=153.59 Aligned_cols=166 Identities=22% Similarity=0.271 Sum_probs=103.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccc-eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRR-EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~-~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
..+|+|+|.+|||||||+|+|++.. ...+...+| +|.... .+.+.+ .+.+|||||+............+.....
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G--~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG--RTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC---------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCc--cceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4689999999999999999999876 333444555 555432 233334 7899999998632111111112222223
Q ss_pred HHh---hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--HHHHHHHHHhcCC-CCcEEe
Q 007334 199 NVL---AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS--LAGAAAESLMLGF-GDPIAI 272 (607)
Q Consensus 199 ~~~---~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~--~~~~~~~~~~~~~-~~~i~i 272 (607)
.++ ..+|.+++|+|++.+.+..+.++..|+... +.|+++|+||+|+....... .......+...+. ...+++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 333 578999999999998887766677787765 78999999999987642111 1112222223321 245899
Q ss_pred ecCCCCChHHHHHHhccchH
Q 007334 273 SAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~ 292 (607)
||+++.|++++++.|.+.+.
T Consensus 179 Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC
T ss_pred eecCCCCHHHHHHHHHHHHh
Confidence 99999999999999877653
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-18 Score=187.70 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=76.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceee------------------------------cCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLV------------------------------GPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~------------------------------~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+|+|++....+. ...+|+|++.....+.+++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 457899999999999999999975322221 12568999998888888899
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.||||||+.++.... ..++..||++|||+|++++ .....++| +|+|+||+
T Consensus 256 ~i~iiDTPGh~~f~~~~----------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKi 325 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGM----------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKL 325 (592)
T ss_dssp ---CCEEESSSEEEEEC----------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred EEEEEECCChHHHHHHH----------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecc
Confidence 99999999998763211 2345679999999999852 22345776 99999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCC-CCCCCEEEcccCCCCCHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~iSA~~g~gv~ 481 (607)
|+.+.. ...++.+...+...+...+.. ...++++++||++|.|+.
T Consensus 326 Dl~~~~--~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 326 DLMSWS--EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGTTC--HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred cccccc--HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 997631 122233332222221011111 123589999999999997
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=171.37 Aligned_cols=149 Identities=25% Similarity=0.289 Sum_probs=98.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeec----------CC----------------------CCceeeeEEEEEEEcC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVG----------PE----------------------AGLTRDSVRVHFEYQG 371 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~----------~~----------------------~gtT~~~~~~~~~~~~ 371 (607)
.++|+++|++|+|||||+|+|++....... .. .|+|.+.....+..++
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 479999999999999999999876422111 11 3556666566677788
Q ss_pred eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCC-cEEEEEeCccCCCCc
Q 007334 372 RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGR-GLVVIVNKMDLLSGR 440 (607)
Q Consensus 372 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~-p~ivv~NK~Dl~~~~ 440 (607)
..+.||||||+.++. .....++..+|++|+|+|++++ .....+. |+|+|+||+|+.+..
T Consensus 104 ~~~~iiDtpGh~~f~----------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 104 RKFIIADTPGHEQYT----------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp EEEEEEECCCSGGGH----------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred ceEEEEECCChHHHH----------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCccc
Confidence 899999999975441 2234567899999999999875 1123355 599999999998632
Q ss_pred CchHHHHHHHHhcHHHHHhhCC-CCCCCCEEEcccCCCCCHHHHHH
Q 007334 441 QNSALYKRVKEAVPQEIQTVIP-QVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
.+.++.+.+.+..-+. .+. .....+++++||++|.|++++++
T Consensus 174 --~~~~~~i~~~~~~~~~-~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 174 --ERVFESIKADYLKFAE-GIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp --HHHHHHHHHHHHHHHH-TTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred --HHHHHHHHHHHHHHHH-HhCCCccCceEEEEeccCCCCcccccc
Confidence 1222222222221111 111 01236899999999999987654
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-17 Score=180.37 Aligned_cols=160 Identities=25% Similarity=0.303 Sum_probs=109.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee------------------CCeeEEEecCCCCc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------------GDLRFKVLDSAGLE 181 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~------------------~~~~~~liDTpG~~ 181 (607)
.|+|+|+|++|+|||||+|+|++.... ...++ .+|.+.......+ ....+.||||||+.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~g-giT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAG-GITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS--CC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc--cccCC-ceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 579999999999999999999986532 11221 1343322222221 11259999999998
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc--------
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-------- 253 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-------- 253 (607)
... .....++..+|++|+|+|++++...+..+...+++.. +.|+++|+||+|+.......
T Consensus 82 ~F~----------~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 82 AFT----------TLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp CCT----------TSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred HHH----------HHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc--CCeEEEEecccccccccccccCCchHHH
Confidence 432 2222456789999999999999988888777777765 78999999999997532110
Q ss_pred -----------HH----HHHHHHHhcCC--------------CCcEEeecCCCCChHHHHHHhccchHHH
Q 007334 254 -----------LA----GAAAESLMLGF--------------GDPIAISAETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 254 -----------~~----~~~~~~~~~~~--------------~~~i~iSA~~g~gi~eL~~~i~~~l~~~ 294 (607)
.. +....+...++ .+++++||++|.|+++|+++|...++..
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 00 11112222232 1579999999999999999998877653
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-17 Score=170.91 Aligned_cols=193 Identities=20% Similarity=0.168 Sum_probs=115.4
Q ss_pred HHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecC
Q 007334 135 ALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVR 214 (607)
Q Consensus 135 SL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s 214 (607)
+|+++++...+......| |.-+.....+..+ .++.+||| ++. +...+..+++++|++|+|+|++
T Consensus 32 sl~~~~~~~~f~~~~~~p---TiGd~~~~~~~~~-~~~~iwD~--qer----------~~~l~~~~~~~ad~vilV~D~~ 95 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKI---YVGDRVEYTPDET-GSGVIENV--LHR----------KNLLTKPHVANVDQVILVVTVK 95 (301)
T ss_dssp CEEEEEECGGGTTTTCCC---CTTCEEEEECCCS-SSEEEEEE--CCC----------SCEETTTTEESCCEEEEEECSS
T ss_pred cEEEEEEcccccccCCCC---CCccEEEEEEcCC-CeEEEEEE--ccc----------cceeeccccccCCEEEEEEeCC
Confidence 677777765542001111 1113322222223 37999999 552 2223335789999999999999
Q ss_pred CCC-CHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC-CCcEEeecCCCCChHHHHHHhccch
Q 007334 215 SGL-HPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF-GDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 215 ~~~-~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
++. +... +..|+... ..++|+++|+||+|+...... ++....+...+. .+++++||++|.|++++++.+..
T Consensus 96 ~~~~s~~~--l~~~l~~~~~~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g-- 169 (301)
T 1u0l_A 96 MPETSTYI--IDKFLVLAEKNELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG-- 169 (301)
T ss_dssp TTCCCHHH--HHHHHHHHHHTTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS--
T ss_pred CCCCCHHH--HHHHHHHHHHCCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC--
Confidence 876 4432 33444322 137899999999999764221 111222222220 37899999999999999987542
Q ss_pred HHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCC-------ceeeeEE
Q 007334 292 EDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAG-------LTRDSVR 364 (607)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~g-------tT~~~~~ 364 (607)
-.++++|++|||||||+|.|.|......+.... +|....
T Consensus 170 ---------------------------------eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~- 215 (301)
T 1u0l_A 170 ---------------------------------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ- 215 (301)
T ss_dssp ---------------------------------SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC-
T ss_pred ---------------------------------CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE-
Confidence 147999999999999999999875443333322 333221
Q ss_pred EEEEEcCeEEEEEecCCCccc
Q 007334 365 VHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 365 ~~~~~~~~~~~liDTpG~~~~ 385 (607)
.+... ..-.++||||+...
T Consensus 216 -~~~~~-~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 216 -LLKFD-FGGYVVDTPGFANL 234 (301)
T ss_dssp -EEECT-TSCEEESSCSSTTC
T ss_pred -EEEcC-CCCEEEECcCCCcc
Confidence 11111 12368999997544
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-18 Score=187.11 Aligned_cols=153 Identities=22% Similarity=0.283 Sum_probs=107.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
++++|+++|++|+|||||+|+|++.. ......+|+|.+.....+.+ ++..+.||||||+.++.... ..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~----------~~ 71 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR----------AR 71 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB----------BS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH----------HH
Confidence 35789999999999999999999764 34457788898876665555 56789999999987663211 13
Q ss_pred HHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC-CCCCCEE
Q 007334 402 NLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGIPVV 470 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v 470 (607)
++..+|++|+|+|++++ .....++|+|+|+||+|+.+..... ....+. ........ ...++++
T Consensus 72 ~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~-v~~~l~-----~~~~~~e~~~~~~~iv 145 (537)
T 3izy_P 72 GTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEK-VKKELL-----AYDVVCEDYGGDVQAV 145 (537)
T ss_dssp SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCS-SSSHHH-----HTTSCCCCSSSSEEEC
T ss_pred HHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHH-HHHHHH-----hhhhhHHhcCCCceEE
Confidence 45679999999999985 2334689999999999997542210 000000 00001111 1246899
Q ss_pred EcccCCCCCHHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++||++|.|++++++.+....+
T Consensus 146 ~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 146 HVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEECCCCCCchhHHHHHHHhhh
Confidence 9999999999999998876543
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-18 Score=187.30 Aligned_cols=155 Identities=21% Similarity=0.301 Sum_probs=112.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.|+|+++|++|+|||||+++|++.... ....++ +|.+.....+.+++..+.+|||||+.... .....
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~G--IT~~i~~~~v~~~~~~i~~iDTPGhe~f~----------~~~~~ 70 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGG--ITQHIGAYHVETENGMITFLDTPGHAAFT----------SMRAR 70 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCC--CCCCSSCCCCCTTSSCCCEECCCTTTCCT----------TSBCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCC--eeEeEEEEEEEECCEEEEEEECCCcHHHH----------HHHHH
Confidence 578999999999999999999976542 233344 67766655666778899999999998432 22234
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHH----HHhcC-CCCcEEeec
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAE----SLMLG-FGDPIAISA 274 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~----~~~~~-~~~~i~iSA 274 (607)
.+..+|++++|+|++++..++..+.+..+... +.|+|+|+||+|+.............. ....+ ..+++++||
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSA 148 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSA 148 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCT
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHhc--CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEee
Confidence 56789999999999998888877766666665 789999999999975321110000000 00111 126799999
Q ss_pred CCCCChHHHHHHhcc
Q 007334 275 ETGLGMTELYEALRP 289 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~ 289 (607)
++|.|+++|++.|..
T Consensus 149 ktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 149 KAGTGIDELLDAILL 163 (501)
T ss_dssp TTCTTCTTHHHHTTT
T ss_pred eeccCcchhhhhhhh
Confidence 999999999999874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=151.55 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=102.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|++|||||||+++|++.... ....+.++.+...+.+.++|. .+.+|||||..+... . ...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~------~----~~~ 73 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR------I----TSA 73 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC------C----CHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh------h----hHH
Confidence 479999999999999999999987532 233344555666677778886 456899999654321 0 123
Q ss_pred HHhhccEEEEEeccchh-------hH---H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------RA---V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------~~---~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|+++. .. . ..+.|+++|+||+|+.+...... +.. + .+.. ..++
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~--~~a-~----~l~~----~~~~ 142 (199)
T 2f9l_A 74 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--DEA-R----AFAE----KNNL 142 (199)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHH-H----HHHH----HTTC
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH--HHH-H----HHHH----HcCC
Confidence 55679999999999864 00 1 13689999999999975422111 111 1 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||+++.|++++++.+.+.+.+
T Consensus 143 ~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 143 SFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999877643
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=170.60 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=101.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEEEc-----------------------CeEEEEE
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEYQ-----------------------GRTVYLV 377 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~~~-----------------------~~~~~li 377 (607)
..++|+++|++|+|||||+++|+|... ......+|+|.+.....+.+. ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 347999999999999999999997532 223345778877554433331 1678999
Q ss_pred ecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCCCCcCchHH
Q 007334 378 DTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQNSAL 445 (607)
Q Consensus 378 DTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~~~~~~~~~ 445 (607)
||||+.++ . ..+...+..+|++|+|+|++++ .....+ .|+|+|+||+|+.+.....+.
T Consensus 89 DtPGh~~f---------~-~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 89 DAPGHEAL---------M-TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp ECSSHHHH---------H-HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHH
T ss_pred ECCChHHH---------H-HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHH
Confidence 99996433 1 2234556678999999999853 111123 589999999999864221112
Q ss_pred HHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 446 YKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++.+ .+.+.. ...++++++||++|.|+++|++.|.+.
T Consensus 159 ~~~i--------~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 159 YRQI--------KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp HHHH--------HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHH--------HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 2222 222221 246799999999999999998877653
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=174.46 Aligned_cols=147 Identities=26% Similarity=0.379 Sum_probs=95.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCcee--------------ecCCCCceeeeEEEEEEEcC-----eEEEEEecCCCccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVL--------------VGPEAGLTRDSVRVHFEYQG-----RTVYLVDTAGWLQR 385 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~--------------~~~~~gtT~~~~~~~~~~~~-----~~~~liDTpG~~~~ 385 (607)
.+|+|+|++|+|||||+++|+...... .....|+|.......+.|.+ ..+.||||||+.++
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 589999999999999999998632111 11235777776666666642 57889999998655
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ 455 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 455 (607)
. ....+++..+|++|+|+|++++ .....++|+|+|+||+|+.... . +... .
T Consensus 85 ~----------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~-~----~~v~----~ 145 (599)
T 3cb4_D 85 S----------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD-P----ERVA----E 145 (599)
T ss_dssp H----------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC-H----HHHH----H
T ss_pred H----------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc-H----HHHH----H
Confidence 2 2345678889999999999875 2345689999999999998653 1 1111 2
Q ss_pred HHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 456 EIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 456 ~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++.+.+. ....+++++||++|.|++++++.+.+.+
T Consensus 146 ei~~~lg-~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 146 EIEDIVG-IDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp HHHHHTC-CCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred HHHHHhC-CCcceEEEeecccCCCchhHHHHHhhcC
Confidence 2333321 2223689999999999999998887643
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-17 Score=166.59 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=101.4
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+++|.+|||||||++++.+..........+ .|.......+. ...++.||||||++....+ . + .+..++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~--~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~-~----l--~~~~yy 70 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLE--STSNPSLEHFS-TLIDLAVMELPGQLNYFEP-S----Y--DSERLF 70 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCC--CCCSCCCEEEC-SSSCEEEEECCSCSSSCCC-S----H--HHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceec--CeeeeeeEEEc-cEEEEEEEECCCchhccch-h----h--hhhhhc
Confidence 58999999999999999987653211111112 23333223332 3478999999999943210 0 0 346788
Q ss_pred hccCEEEEEEecCCCCCHhH-HHHHHHHHh---hCCCCcEEEEecCCCcccCCcC------cHHHHHHHHHh-----cCC
Q 007334 202 AKTQFAIFMIDVRSGLHPLD-LEVGKWLRK---HAPQIKPIVAMNKCESLHNGTG------SLAGAAAESLM-----LGF 266 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~---~~~~~p~ilV~NK~D~~~~~~~------~~~~~~~~~~~-----~~~ 266 (607)
+.++++|+|+|+++. .... .++.+|+.. ..++.|+++|+||+|+...... ...+...++.. .++
T Consensus 71 r~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i 149 (331)
T 3r7w_B 71 KSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149 (331)
T ss_dssp TTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred cCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence 999999999999987 3332 334455543 3568999999999999764210 00111111122 223
Q ss_pred CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 267 GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 267 ~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.++++||++ .++.+.|..|...+.+
T Consensus 150 -~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 150 -SFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp -EEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred -eEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 568999998 5899999998876644
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=176.48 Aligned_cols=89 Identities=25% Similarity=0.329 Sum_probs=49.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---------------------C---CeeEEEecC
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---------------------G---DLRFKVLDS 177 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---------------------~---~~~~~liDT 177 (607)
+|+|||.||||||||+|+|++.. +.+++.|+ +|++...+...+ . ..++.+|||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~--tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPF--TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCC--cccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 79999999999999999999987 66778887 888777665321 2 257999999
Q ss_pred CCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC
Q 007334 178 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG 216 (607)
Q Consensus 178 pG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~ 216 (607)
||+........ ......+.+++.+|++++|+|++++
T Consensus 79 pG~~~~a~~~~---~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHEGR---GLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhhhh---hHHHHHHHHHhcCCEEEEEEecccc
Confidence 99974221110 1112223567899999999999875
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=171.68 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=102.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee------------------------cc------CCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV------------------------YN------TPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v------------------------~~------~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|++....+. .+ ..+ +|.+.....+...+
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~g--iTi~~~~~~~~~~~ 83 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG--VTINLTFMRFETKK 83 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECSS
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcC--ceeEeeEEEEecCC
Confidence 46899999999999999999986521111 01 234 77777777777788
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCC-------CCHhHHHHHHHHHhhCCCC-cEEEEe
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-------LHPLDLEVGKWLRKHAPQI-KPIVAM 241 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~-------~~~~~~~~~~~l~~~~~~~-p~ilV~ 241 (607)
..+.+|||||+. ++...+..++..+|++|+|+|++++ ...+..+....+... +. |+|+|+
T Consensus 84 ~~~~iiDtpG~~----------~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~--~~~~iivvi 151 (435)
T 1jny_A 84 YFFTIIDAPGHR----------DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAV 151 (435)
T ss_dssp CEEEECCCSSST----------THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEE
T ss_pred eEEEEEECCCcH----------HHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEE
Confidence 999999999998 5556677889999999999999986 444445555555554 44 689999
Q ss_pred cCCCcccCC--cCc----HHHHHHHHHhcCC----CCcEEeecCCCCChHHHH
Q 007334 242 NKCESLHNG--TGS----LAGAAAESLMLGF----GDPIAISAETGLGMTELY 284 (607)
Q Consensus 242 NK~D~~~~~--~~~----~~~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~ 284 (607)
||+|+.... ... ..+....+...++ .+++++||++|.|+.+++
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 999998631 111 1222333444554 257999999999998654
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=168.76 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=91.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEEE---------------c--------CeEEEEEe
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEY---------------Q--------GRTVYLVD 378 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~~---------------~--------~~~~~liD 378 (607)
.++|+++|++|+|||||+++|+|... ......+|+|.+.......+ + ...+.|||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 58999999999999999999997532 22334467787654333222 1 16789999
Q ss_pred cCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCCCCcCchHHH
Q 007334 379 TAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQNSALY 446 (607)
Q Consensus 379 TpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~~~~~~~~~~ 446 (607)
|||+.++ . ..+...+..+|++|+|+|++++ .....+ .|+|+|+||+|+.+.......+
T Consensus 88 tPGh~~f---------~-~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 88 SPGHETL---------M-ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp CSSHHHH---------H-HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred CCCHHHH---------H-HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHH
Confidence 9996433 1 1223445567999999999853 111223 5899999999998754322233
Q ss_pred HHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.+.+. +... ...+++++++||++|.|+++|++.|.+.
T Consensus 158 ~~i~~~----l~~~--~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 158 EQIKEF----VKGT--IAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp HHHHHH----HTTS--TTTTCCEEEC------CHHHHHHHHHHH
T ss_pred HHHHHH----Hhhc--CCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 332211 1111 1236799999999999999998887653
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-17 Score=156.69 Aligned_cols=144 Identities=16% Similarity=0.095 Sum_probs=84.0
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
...++|+++|.+|||||||+|+|++............+++.+. .+..+.+|||||+.. +....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~----------~~~~~ 72 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVK----------LRYKL 72 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGG----------GTHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHH----------HHHHH
Confidence 3468999999999999999999998764221111111122222 567899999999973 22233
Q ss_pred HHHhhc----cCEEEEEEecC-CCCCHhH--HHHHHHHHh----hCCCCcEEEEecCCCcccCCcCc------HHHHHHH
Q 007334 198 ANVLAK----TQFAIFMIDVR-SGLHPLD--LEVGKWLRK----HAPQIKPIVAMNKCESLHNGTGS------LAGAAAE 260 (607)
Q Consensus 198 ~~~~~~----ad~vl~VvD~s-~~~~~~~--~~~~~~l~~----~~~~~p~ilV~NK~D~~~~~~~~------~~~~~~~ 260 (607)
..++.. +|++++|+|++ ++.+..+ ..+.+.+.. ...+.|+++|+||+|+....... .......
T Consensus 73 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 152 (218)
T 1nrj_B 73 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV 152 (218)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHH
Confidence 344444 89999999999 4444333 233333332 12478999999999998764422 1111112
Q ss_pred HHhcCCCCcEEeecCCCCC
Q 007334 261 SLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 261 ~~~~~~~~~i~iSA~~g~g 279 (607)
....+. .++++||++|.+
T Consensus 153 ~~~~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 153 IERRKK-SLNEVERKINEE 170 (218)
T ss_dssp HHHHHH-HHHC--------
T ss_pred HHHHhc-cccccccccccc
Confidence 222233 568999998875
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-17 Score=177.17 Aligned_cols=151 Identities=21% Similarity=0.184 Sum_probs=107.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee------------------------eecc------CCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA------------------------LVYN------TPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~------------------------~v~~------~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|++.... .+.+ ..| +|.+..+..+...+
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~G--iTi~~~~~~~~~~~ 84 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG--ITIDIALWKFETPK 84 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTT--CCCSCSCEEEECSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcC--cEEEEEEEEEecCC
Confidence 368999999999999999999864210 0111 134 77777777777788
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCH-------hHHHHHHHHHhhCCCCc-EEEEe
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHP-------LDLEVGKWLRKHAPQIK-PIVAM 241 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~-------~~~~~~~~l~~~~~~~p-~ilV~ 241 (607)
..+.+|||||+. ++...+..++..+|++|+|+|++++..+ +..+....+... +.| +|+|+
T Consensus 85 ~~~~iiDtPGh~----------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~--~v~~iivvi 152 (458)
T 1f60_A 85 YQVTVIDAPGHR----------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAV 152 (458)
T ss_dssp EEEEEEECCCCT----------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEE
T ss_pred ceEEEEECCCcH----------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc--CCCeEEEEE
Confidence 999999999988 5666677889999999999999976533 444444444444 565 89999
Q ss_pred cCCCcccCCcCcH----HHHHHHHHhcCC----CCcEEeecCCCCChHHHH
Q 007334 242 NKCESLHNGTGSL----AGAAAESLMLGF----GDPIAISAETGLGMTELY 284 (607)
Q Consensus 242 NK~D~~~~~~~~~----~~~~~~~~~~~~----~~~i~iSA~~g~gi~eL~ 284 (607)
||+|+........ .+....+..+++ .+++++||++|.|+.++.
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~ 203 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT 203 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence 9999984211111 112223344554 368999999999997654
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=172.36 Aligned_cols=152 Identities=24% Similarity=0.276 Sum_probs=95.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee------------------------------ecCCCCceeeeEEEEEEEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL------------------------------VGPEAGLTRDSVRVHFEYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~------------------------------~~~~~gtT~~~~~~~~~~~~~~ 373 (607)
.++|+++|++|+|||||+++|++..... .....|+|.+.....+.+.+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 4799999999999999999998641111 1114688888877778888899
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------h-------HHhcCC-cEEEEEeCcc
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------R-------AVEEGR-GLVVIVNKMD 435 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~-------~~~~~~-p~ivv~NK~D 435 (607)
+.||||||+.++. ..+..++..+|++|+|+|++++ + ....+. |+|+|+||+|
T Consensus 86 ~~iiDtpG~~~f~----------~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~D 155 (435)
T 1jny_A 86 FTIIDAPGHRDFV----------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 155 (435)
T ss_dssp EEECCCSSSTTHH----------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGG
T ss_pred EEEEECCCcHHHH----------HHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEccc
Confidence 9999999976542 2345677889999999999865 0 112354 6999999999
Q ss_pred CCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
+.+.....+.++.+.+.+...+...-.....++++++||++|.|+.++++
T Consensus 156 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 156 LTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp GSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 98632112223333333322222211111247899999999999976643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-17 Score=171.76 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=104.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcccee-----eeccCCCC--------------------ceeee--------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREA-----LVYNTPDD--------------------HVTRD-------------- 159 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~-----~v~~~~~~--------------------~~T~~-------------- 159 (607)
..|+|+|||.+|||||||+|+|++.++. ++...|+. ++|++
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999998753 22222320 01111
Q ss_pred ---------eEEEEee-eCCeeEEEecCCCCccccC---chhHHHHHHHHHHHHhhccC-EEEEEEecCCCCCHhHH-HH
Q 007334 160 ---------IREGLAK-LGDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKTQ-FAIFMIDVRSGLHPLDL-EV 224 (607)
Q Consensus 160 ---------~~~~~~~-~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~ad-~vl~VvD~s~~~~~~~~-~~ 224 (607)
...-.+. ..+..+.||||||+..... .......+...+..++..++ ++++|+|++.+....+. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0000011 1246899999999974321 12222345566677776655 66667777765555543 24
Q ss_pred HHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHh--cCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 225 GKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLM--LGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 225 ~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~--~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
++.+... +.|+++|+||+|+................. .++..++++||++|.|+++|++.+.+
T Consensus 190 ~~~~~~~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHCTT--CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHhCcC--CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4444433 789999999999986543211111100011 23335688999999999999998875
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=174.72 Aligned_cols=148 Identities=27% Similarity=0.410 Sum_probs=97.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee--------------ecCCCCceeeeEEEEEEEc---C--eEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL--------------VGPEAGLTRDSVRVHFEYQ---G--RTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~--------------~~~~~gtT~~~~~~~~~~~---~--~~~~liDTpG~~~ 384 (607)
..+|+++|++|+|||||+++|++..... .....|+|.......+.|. + ..+.||||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 3689999999999999999998632111 1113466665544555554 2 5778999999866
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcH
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVP 454 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 454 (607)
+. ....+++..+|++|+|+|++++ .....++|+|+|+||+|+.... . +.. .
T Consensus 86 F~----------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~----~~v----~ 146 (600)
T 2ywe_A 86 FS----------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-V----DRV----K 146 (600)
T ss_dssp GH----------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-H----HHH----H
T ss_pred HH----------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-H----HHH----H
Confidence 52 2344677899999999999886 2345689999999999997652 1 111 1
Q ss_pred HHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 455 QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 455 ~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.++.+.+. ....+++++||++|.|++++++.+.+.+
T Consensus 147 ~el~~~lg-~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 147 KQIEEVLG-LDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp HHHHHTSC-CCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHhhC-CCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 22333321 1123589999999999999998887643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=167.69 Aligned_cols=182 Identities=18% Similarity=0.194 Sum_probs=111.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----eecCCCC----------------------ceee---------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----LVGPEAG----------------------LTRD--------------- 361 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----~~~~~~g----------------------tT~~--------------- 361 (607)
.++|+++|.+|||||||+|+|+|.... .++..|+ +|++
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999987654 4444555 3332
Q ss_pred --------eEEEEEEE-cCeEEEEEecCCCcccccc---cCcchhHHHHHHHHHhhc-cEEEEEeccchh------h-H-
Q 007334 362 --------SVRVHFEY-QGRTVYLVDTAGWLQREKE---KGPASLSVMQSRKNLMRA-HVVALVLDAEEV------R-A- 420 (607)
Q Consensus 362 --------~~~~~~~~-~~~~~~liDTpG~~~~~~~---~~~~~~~~~~~~~~i~~a-d~~llViD~~~~------~-~- 420 (607)
.....+.. ++..+.||||||+.+.... ..........+..++..+ +++++|+|++.. . .
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 11111112 2467999999998754211 111111123344566555 556666776542 1 1
Q ss_pred ---HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC-CCCCCEEEcccCCCCCHHHHHHHHHHHH-----
Q 007334 421 ---VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ-VTGIPVVFTSALEGRGRIAVMHQVIDTY----- 491 (607)
Q Consensus 421 ---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~iSA~~g~gv~~l~~~i~~~~----- 491 (607)
...++|+++|+||+|+.+...... +.+ + .+.+.. ..+.+++++||++|.|++++++.+.+..
T Consensus 191 ~~~~~~~~~~i~V~NK~Dl~~~~~~~~--~~~-~------~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~~~f~~ 261 (353)
T 2x2e_A 191 KEVDPQGQRTIGVITKLDLMDEGTDAR--DVL-E------NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS 261 (353)
T ss_dssp HHHCTTCTTEEEEEECGGGSCTTCCCH--HHH-T------TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHhCcCCCceEEEeccccccCcchhHH--HHH-h------CCcccccCCceEEEeCCcccccccccHHHHHHHHHHHhcc
Confidence 124789999999999986532110 100 0 111111 1235788999999999999999887631
Q ss_pred ----HHHhcCCChHHHHHHHHHHHHhC
Q 007334 492 ----QKWCLRLPTSRLNRWLRKVMGRH 514 (607)
Q Consensus 492 ----~~~~~~~~~~~l~~~l~~~~~~~ 514 (607)
.....++.+..|+++|++.+..+
T Consensus 262 ~~~~~~~~~r~~~~~l~~~l~e~l~~~ 288 (353)
T 2x2e_A 262 HPSYRHLADRMGTPYLQKVLNQQLTNH 288 (353)
T ss_dssp CTTTGGGGGGCSHHHHHHHHHHHHHHH
T ss_pred CCcccccHHhhCHHHHHHHHHHHHHHH
Confidence 22345677788888887665543
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-18 Score=182.05 Aligned_cols=149 Identities=23% Similarity=0.326 Sum_probs=105.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
++.+|+++|++|+|||||+++|++.. ......+|+|.+.....+.+++..+.||||||+.++.... .++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~----------~~~ 71 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR----------ARG 71 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB----------CSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH----------HHH
Confidence 45789999999999999999999753 4445567888876665666788899999999987663211 134
Q ss_pred HhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC--CCCCEE
Q 007334 403 LMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV--TGIPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v 470 (607)
+..+|++|+|+|++++ .....++|+|+++||+|+....... +...+.. ...++.. ..++++
T Consensus 72 ~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~-----v~~~l~~--~~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 72 AQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR-----VKNELSQ--YGILPEEWGGESQFV 144 (501)
T ss_dssp SBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCC-----TTCCCCC--CCCCTTCCSSSCEEE
T ss_pred HhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHH-----HHHHHHH--hhhhHHHhCCCccEE
Confidence 5679999999999885 2234689999999999997532100 0000000 0011111 136899
Q ss_pred EcccCCCCCHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~ 489 (607)
++||++|.|++++++.+..
T Consensus 145 ~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 145 HVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp ECCTTTCTTCTTHHHHTTT
T ss_pred EEeeeeccCcchhhhhhhh
Confidence 9999999999999988764
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-16 Score=163.72 Aligned_cols=199 Identities=23% Similarity=0.288 Sum_probs=128.0
Q ss_pred cCccCCCCCCCCCCccccccccccccCCc-ccccccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeee
Q 007334 82 EALEDTHVEPEPDGVVEDHKVKPLYEKPV-DFTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDI 160 (607)
Q Consensus 82 ~g~g~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~ 160 (607)
.|.|+..++...+.. . +....-..-. .--.+.......|+|||++|||||||+|+|++... .+.+.++ +|.+.
T Consensus 121 gG~Gn~~f~~~~~~~--p-~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~f--tTl~p 194 (416)
T 1udx_A 121 GGRGNMHFVSPTRQA--P-RFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPF--TTLSP 194 (416)
T ss_dssp CCCCGGGGCCSSCSS--C-CEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTT--CSSCC
T ss_pred CCcccceeecccccC--c-ccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-cccCccc--ceecc
Confidence 577888888887776 2 2222111111 00112223356899999999999999999998765 3556666 77777
Q ss_pred EEEEeeeCC-eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhC---CCC
Q 007334 161 REGLAKLGD-LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA---PQI 235 (607)
Q Consensus 161 ~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~---~~~ 235 (607)
..+.+...+ ..+.++||||+.........+. ......+..++.+++|+|++ .....+.. +.+.+.... ...
T Consensus 195 ~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~---~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~ 270 (416)
T 1udx_A 195 NLGVVEVSEEERFTLADIPGIIEGASEGKGLG---LEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRR 270 (416)
T ss_dssp EEEEEECSSSCEEEEEECCCCCCCGGGSCCSC---HHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHS
T ss_pred eeeEEEecCcceEEEEeccccccchhhhhhhh---HHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcC
Confidence 777777765 7899999999974322110000 11133467899999999997 22222211 222222211 257
Q ss_pred cEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 236 KPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 236 p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
|.++|+||+|+... .........+...+. .++++||++++|+++|++.|.+.+..
T Consensus 271 P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~-~vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 271 PSLVALNKVDLLEE--EAVKALADALAREGL-AVLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp CEEEEEECCTTSCH--HHHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCChhhH--HHHHHHHHHHHhcCC-eEEEEECCCccCHHHHHHHHHHHHHh
Confidence 99999999998763 112222233334454 78999999999999999999887753
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=160.01 Aligned_cols=152 Identities=15% Similarity=0.215 Sum_probs=101.0
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|..|||||||++++.+..........+.|.......+. ...+++||||||+.++... . ..+..++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~----~---l~~~~yyr~ 72 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP----S---YDSERLFKS 72 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC----S---HHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch----h---hhhhhhccC
Confidence 6899999999999999988754211111112222221111221 2368999999997665210 0 123467889
Q ss_pred ccEEEEEeccchh---------h------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC----CC
Q 007334 406 AHVVALVLDAEEV---------R------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV----TG 466 (607)
Q Consensus 406 ad~~llViD~~~~---------~------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 466 (607)
|+++|+|+|+++. . ....+.|+++++||+|+.....+. ...+.+..+.++.++.. .+
T Consensus 73 a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~----~~~R~V~~~~~~~la~~~~~~~~ 148 (331)
T 3r7w_B 73 VGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV----DAQRDIMQRTGEELLELGLDGVQ 148 (331)
T ss_dssp CSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH----HHHHHHHHHHHHTTSSSSCSCCC
T ss_pred CCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhh----hHHHHhhHHHHHHHHhhcccccC
Confidence 9999999999874 0 012478999999999998653211 12244555666666664 57
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++++||++ .||.++|..+++.
T Consensus 149 i~f~eTSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHHHTT
T ss_pred ceEEEeccCC-CcHHHHHHHHHHH
Confidence 8999999998 5899999988764
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=181.54 Aligned_cols=159 Identities=17% Similarity=0.100 Sum_probs=113.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccce----e------ee-----ccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRRE----A------LV-----YNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~----~------~v-----~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
..+|+++|++|+|||||+++|++... . .. ....| +|.+.....+...+..+.||||||+.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerG--ITIdva~v~f~~~~~kI~IIDTPGHe--- 370 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG--ITINTSHVEYDTPTRHYAHVDCPGHA--- 370 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC-----------------------CCSCEEEECSSCEEEEEECCCHH---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCc--eeEEEEEEEEcCCCEEEEEEECCChH---
Confidence 46899999999999999999997410 0 00 11233 56665555556677899999999998
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccCCcC---cHHHHHHH
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHNGTG---SLAGAAAE 260 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~~~~---~~~~~~~~ 260 (607)
++...+...+..+|++|+|+|++++...+..+....+... ++| +|+|+||+|+...... ...+....
T Consensus 371 -------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~el 441 (1289)
T 3avx_A 371 -------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVREL 441 (1289)
T ss_dssp -------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHH
Confidence 5667777889999999999999999888877766666665 678 7899999999853210 01122233
Q ss_pred HHhcCC----CCcEEeecCCC--------CChHHHHHHhccchH
Q 007334 261 SLMLGF----GDPIAISAETG--------LGMTELYEALRPSVE 292 (607)
Q Consensus 261 ~~~~~~----~~~i~iSA~~g--------~gi~eL~~~i~~~l~ 292 (607)
+...++ .+++++||++| .|+++|++.|.+.++
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 444554 26799999999 468889988877654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-16 Score=147.55 Aligned_cols=145 Identities=19% Similarity=0.266 Sum_probs=101.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEE--EEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTV--YLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~--~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.++|+++|++|||||||+++|++... .....++++.+...+.+.++|..+ .+|||||+.+... + ...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~------~----~~~ 97 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA------I----TSA 97 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC------C----CHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh------h----hHH
Confidence 47999999999999999999998743 233455566666677788888755 5799999755421 0 124
Q ss_pred HHhhccEEEEEeccchhh-------H---H----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-------A---V----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-------~---~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|.++.. . . ..+.|+++|+||+|+.+...... +. .+ .+.. ..++
T Consensus 98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~--~~-a~----~l~~----~~~~ 166 (191)
T 1oix_A 98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT--DE-AR----AFAE----KNGL 166 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH--HH-HH----HHHH----HTTC
T ss_pred HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH--HH-HH----HHHH----HcCC
Confidence 556799999999987640 0 1 13689999999999975322111 11 01 1111 1256
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
.++++||+++.|++++|+.+.+.
T Consensus 167 ~~ld~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 167 SFIETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 89999999999999999988764
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=176.23 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=107.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCc--------------eeeeE-------------------------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL--------------TRDSV------------------------- 363 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gt--------------T~~~~------------------------- 363 (607)
..++|+|+|.+|+|||||+|+|+|.....++..|+| |++..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 358999999999999999999999887788888877 33210
Q ss_pred --------------EEEEEEcC----eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh------h
Q 007334 364 --------------RVHFEYQG----RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------R 419 (607)
Q Consensus 364 --------------~~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~------~ 419 (607)
...+.+.. ..+.||||||+.+... ....+..++..||++|+|+|++.+ .
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~ 220 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-------RNELSLGYVNNCHAILFVMRASQPCTLGERR 220 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-------CHHHHTHHHHSSSEEEEEEETTSTTCHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-------HHHHHHHHHHhCCEEEEEEeCCCccchhHHH
Confidence 00111111 3689999999765321 124556788999999999999764 1
Q ss_pred ----H-HhcCCcEEEEEeCccCCCCc----CchHHHHH----HHHhcHHHHHhhCC----CCCCCCEEEcccC-------
Q 007334 420 ----A-VEEGRGLVVIVNKMDLLSGR----QNSALYKR----VKEAVPQEIQTVIP----QVTGIPVVFTSAL------- 475 (607)
Q Consensus 420 ----~-~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~v~iSA~------- 475 (607)
. ...++|+++|+||+|+.... ...+..+. +.+.+...+..... .....++++|||+
T Consensus 221 ~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~ 300 (695)
T 2j69_A 221 YLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRL 300 (695)
T ss_dssp HHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHH
T ss_pred HHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhc
Confidence 1 12378999999999987542 10011111 21111122222211 0123579999999
Q ss_pred -------CCCCHHHHHHHHHHHHH
Q 007334 476 -------EGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 476 -------~g~gv~~l~~~i~~~~~ 492 (607)
+|.|+++++..+.+.+.
T Consensus 301 ~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 301 KNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred cCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999887654
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-16 Score=174.31 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=100.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCC-CceeeeEEEEEEEc------------------CeEEEEEecCCCcc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA-GLTRDSVRVHFEYQ------------------GRTVYLVDTAGWLQ 384 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~-gtT~~~~~~~~~~~------------------~~~~~liDTpG~~~ 384 (607)
+++|+++|++|+|||||+++|++... ....+ |+|.+.....+.+. ...+.||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 57899999999999999999997532 22222 45544322222221 12589999999877
Q ss_pred cccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCc------------
Q 007334 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQN------------ 442 (607)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~------------ 442 (607)
+..... +++..+|++|+|+|++++ .....++|+|+|+||+|+......
T Consensus 83 F~~~~~----------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~ 152 (594)
T 1g7s_A 83 FTTLRK----------RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSK 152 (594)
T ss_dssp CTTSBC----------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTT
T ss_pred HHHHHH----------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHH
Confidence 632111 345679999999999984 233468999999999999753110
Q ss_pred --h---HHHHHHHHhcHHHHHhh-C---------CCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 443 --S---ALYKRVKEAVPQEIQTV-I---------PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 443 --~---~~~~~~~~~~~~~~~~~-~---------~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
. +.+......+..++.+. + .....+|++++||++|.|+++|++.+......
T Consensus 153 ~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 153 QDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 1 11111111122222211 1 01234689999999999999999998876543
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-16 Score=173.40 Aligned_cols=152 Identities=25% Similarity=0.265 Sum_probs=91.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCcee------------------------e------cCCCCceeeeEEEEEEEcCe
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVL------------------------V------GPEAGLTRDSVRVHFEYQGR 372 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~------------------------~------~~~~gtT~~~~~~~~~~~~~ 372 (607)
..++|+++|++|+|||||+++|++..... + ....|+|.+.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 35799999999999999999997522110 1 12357888876667778899
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCc
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKM 434 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~ 434 (607)
.+.||||||+.++. ..+..++..+|++|+|+|++++ .....++| +|+|+||+
T Consensus 122 ~~~iiDtPGh~~f~----------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKM 191 (467)
T ss_dssp EEEECCCCC---------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred EEEEEECCCcHHHH----------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECc
Confidence 99999999986552 1234566789999999999874 11235787 99999999
Q ss_pred cCCCCcCchHHHHHHHHhcHHHHHhhCCCC--CCCCEEEcccCCCCCHHHHH
Q 007334 435 DLLSGRQNSALYKRVKEAVPQEIQTVIPQV--TGIPVVFTSALEGRGRIAVM 484 (607)
Q Consensus 435 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~iSA~~g~gv~~l~ 484 (607)
|+.......+.++.+...+...+....... ..++++++||++|.|+.+++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 996532112223333333322222210110 14689999999999998766
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-16 Score=179.10 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=96.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC------c---------eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED------R---------VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~------~---------~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
..++|+++|++|+|||||+++|++.. . .......|+|.+.....+...+..+.||||||+.++
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF-- 372 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY-- 372 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH--
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH--
Confidence 35899999999999999999998741 0 011235678887655566667889999999996543
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
. ..+..++..+|++|+|+|++++ .....++| +|+|+||+|+.+.. +.++.+.+.+...
T Consensus 373 -------~-~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~---e~le~i~eEi~el 441 (1289)
T 3avx_A 373 -------V-KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDE---ELLELVEMEVREL 441 (1289)
T ss_dssp -------H-HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCH---HHHHHHHHHHHHH
T ss_pred -------H-HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccch---hhHHHHHHHHHHH
Confidence 1 2344567789999999999875 22245888 79999999998632 1222222222222
Q ss_pred HHhhCCCCCCCCEEEcccCCCC--------CHHHHHHHHHH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGR--------GRIAVMHQVID 489 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~--------gv~~l~~~i~~ 489 (607)
+...-.....+|++++||++|. |+.++++.+..
T Consensus 442 Lk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 442 LSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp HHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 2211111124799999999993 45555555543
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=176.33 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=91.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEE------EEEE----cCeEEEEEecCCCcccccccCcc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV------HFEY----QGRTVYLVDTAGWLQREKEKGPA 392 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~------~~~~----~~~~~~liDTpG~~~~~~~~~~~ 392 (607)
..+||+++|.+|||||||+|+|++... .....+.+..+.... .+.. .+..+.+|||||......
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~-~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~----- 113 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETF-DPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA----- 113 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-----
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-----
Confidence 358999999999999999999997642 111112222222211 1111 257899999999654321
Q ss_pred hhHHHHHHHHHhhccEEEEEeccchh--------h--HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCC
Q 007334 393 SLSVMQSRKNLMRAHVVALVLDAEEV--------R--AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIP 462 (607)
Q Consensus 393 ~~~~~~~~~~i~~ad~~llViD~~~~--------~--~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (607)
. ...+++.+|++|+|+|++.. . ....++|+|+|+||+|+.+...... +. ..+.+
T Consensus 114 -~----~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~--~~--------~~~~~- 177 (535)
T 3dpu_A 114 -S----HQFFMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQ--KK--------INERF- 177 (535)
T ss_dssp -T----CHHHHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCH--HH--------HHHHC-
T ss_pred -H----HHHHccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCH--HH--------HHHHH-
Confidence 1 12456789999999999875 1 1224599999999999986533211 11 11111
Q ss_pred CCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 463 QVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 463 ~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
...+.+++++||++|.|++++++.+.+.+.+
T Consensus 178 ~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 178 PAIENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp GGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred HhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 1235689999999999999999999887654
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-17 Score=172.25 Aligned_cols=89 Identities=29% Similarity=0.291 Sum_probs=49.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE---------------------c---CeEEEEEecC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY---------------------Q---GRTVYLVDTA 380 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~---------------------~---~~~~~liDTp 380 (607)
++|+++|.||||||||+|+|++.. +.++++|++|+++..+...+ + ..++.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999886 78899999999887765332 2 2578999999
Q ss_pred CCcccccccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 381 G~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
|+.+.... . ..+ ......+++.+|++++|+|+++
T Consensus 80 G~~~~a~~-~-~~l-~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAHE-G-RGL-GNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp ------------------CCCSSTTCSEEEEEEETTC
T ss_pred Ccccchhh-h-hhH-HHHHHHHHhcCCEEEEEEeccc
Confidence 98653110 0 001 0122245788999999999965
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-16 Score=175.44 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=88.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee-----------ecc------CCCCceeeeeEEEEeeeCCeeEEEecCCCCc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL-----------VYN------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----------v~~------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 181 (607)
..++|+|+|++|||||||+|+|++....+ +.+ .++ +|.......+.+.+..++||||||+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~g--iTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRG--ITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC---------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcC--ceEeeeeEEEEECCeeEEEEECcCCc
Confidence 35789999999999999999999532111 111 123 56666666777889999999999998
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
. +...+..++..+|++|+|+|++++.+..+..+...+... +.|+++|+||+|+...
T Consensus 87 d----------f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 D----------FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp S----------CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT--TCCEEEEEECTTSTTC
T ss_pred c----------hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc--CCCEEEEEECCCcccc
Confidence 3 334456778889999999999999998887777777765 7899999999998754
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-16 Score=169.35 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=86.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee---------------ecc------CCCCceeeeeEEEEeeeCCeeEEEecCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL---------------VYN------TPDDHVTRDIREGLAKLGDLRFKVLDSA 178 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~---------------v~~------~~~~~~T~~~~~~~~~~~~~~~~liDTp 178 (607)
.++|+|+|++|||||||+|+|+.....+ +.+ ..+ +|.+.....+.+.+..+.|||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rG--iTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRG--ISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC---------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCC--cceeeeEEEEEECCeEEEEEECC
Confidence 4789999999999999999999642211 111 122 44444455667788999999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
|+. ++...+..++..+|++|+|+|++++.......+...+... ++|+++|+||+|+...
T Consensus 91 G~~----------df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~--~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHE----------DFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR--DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CST----------TCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred CCh----------hHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence 997 3334566788999999999999999887776676666554 7899999999998753
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-17 Score=171.82 Aligned_cols=198 Identities=19% Similarity=0.204 Sum_probs=121.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhc------CCceeecCCCCcee-------------------------------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ------EDRVLVGPEAGLTR------------------------------------- 360 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~------~~~~~~~~~~gtT~------------------------------------- 360 (607)
...++++|+||+|||||+|.|++ ......+..++++.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr 134 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAA 134 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHH
Confidence 45799999999999999999984 33333332222211
Q ss_pred eeEEE--EEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhhH---Hh---cCCcEEEEEe
Q 007334 361 DSVRV--HFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRA---VE---EGRGLVVIVN 432 (607)
Q Consensus 361 ~~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~~---~~---~~~p~ivv~N 432 (607)
+.... .+...+.++.|+||||+.+.. . .....+|++++|+|+..+.. .. ...|.++++|
T Consensus 135 ~~~e~~~~~~~~~~~~iliDT~Gi~~~~-------~------~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvlN 201 (337)
T 2qm8_A 135 KTRETMLLCEAAGFDVILVETVGVGQSE-------T------AVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVN 201 (337)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSSCH-------H------HHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCcch-------h------hHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEEE
Confidence 11000 012357899999999986431 1 12357999999999864311 11 1346788889
Q ss_pred CccCCCCcCchHHHHHHHHhcHHHHHhhCCC---CCCCCEEEcccCCCCCHHHHHHHHHHHHHHHh-----cCCChHHHH
Q 007334 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ---VTGIPVVFTSALEGRGRIAVMHQVIDTYQKWC-----LRLPTSRLN 504 (607)
Q Consensus 433 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~-----~~~~~~~l~ 504 (607)
|+|+..... ......+.+...+. .+.. .+..+++++||++|.|++++++.|.+....+. .+..+...+
T Consensus 202 K~Dl~~~~~---~s~~~~~~l~~a~~-l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~~~~~r~~~~~ 277 (337)
T 2qm8_A 202 KADDGDGER---RASAAASEYRAALH-ILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGEIAGKRREQDV 277 (337)
T ss_dssp CCSTTCCHH---HHHHHHHHHHHHHT-TBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred chhccCchh---HHHHHHHHHHHHHH-hccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 999864311 11111122211111 1110 11468999999999999999999988765332 112234456
Q ss_pred HHHHHHHHh------CCCC-CCCCcCcEEEEeecCCCCCEE
Q 007334 505 RWLRKVMGR------HSWK-DQSAQPKIKYFTQVKARPPTF 538 (607)
Q Consensus 505 ~~l~~~~~~------~~~~-~~~~~~ki~~~~q~~~~pp~f 538 (607)
.|+.+++.+ ++++ ..++..+++|.+|....||++
T Consensus 278 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 318 (337)
T 2qm8_A 278 KWMWALVHERLHQRLVGSAEVRQATAEAERAVAGGEHSPAA 318 (337)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHcCCCCHHH
Confidence 666666554 3443 456778999999999999954
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-17 Score=163.58 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=58.2
Q ss_pred ccCEEEEEEecCCC--CCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh-cCCCCcEEeecCC
Q 007334 203 KTQFAIFMIDVRSG--LHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLM-LGFGDPIAISAET 276 (607)
Q Consensus 203 ~ad~vl~VvD~s~~--~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~-~~~~~~i~iSA~~ 276 (607)
+||++|+|+|++++ .+..... +...+.+. ..+.|+++|+||+|+...+.. +........ .+. +++++||++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~-~~~e~SAk~ 238 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNL-QVVETSARS 238 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSC-CEEECBTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCC-eEEEEECCC
Confidence 69999999999987 6665522 22222221 247899999999999653221 222222333 244 789999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|.|++++++.|.+.+
T Consensus 239 g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLI 253 (255)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999987654
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-16 Score=171.24 Aligned_cols=151 Identities=18% Similarity=0.218 Sum_probs=92.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee------------------------eecc------CCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA------------------------LVYN------TPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~------------------------~v~~------~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|++|+|||||+|+|+..... .+.+ ..+ +|.+..+..+...+
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~g--iTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG--KTVEVGRAYFETEH 120 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEECSS
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcC--ceEEeeeEEEecCC
Confidence 468999999999999999999753211 1111 123 67777666777788
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCC-------HhHHHHHHHHHhhCCCCc-EEEEe
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH-------PLDLEVGKWLRKHAPQIK-PIVAM 241 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~-------~~~~~~~~~l~~~~~~~p-~ilV~ 241 (607)
..+.||||||+. ++...+...+..+|++|+|+|++++.. .+..+....+... +.| +|+|+
T Consensus 121 ~~~~iiDtPGh~----------~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~--~vp~iivvi 188 (467)
T 1r5b_A 121 RRFSLLDAPGHK----------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVI 188 (467)
T ss_dssp EEEEECCCCC---------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEE
T ss_pred eEEEEEECCCcH----------HHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc--CCCEEEEEE
Confidence 999999999998 555666778899999999999998742 2334444444444 677 99999
Q ss_pred cCCCcccCCc--Cc----HHHHHHHHHhc-CCC-----CcEEeecCCCCChHHHH
Q 007334 242 NKCESLHNGT--GS----LAGAAAESLML-GFG-----DPIAISAETGLGMTELY 284 (607)
Q Consensus 242 NK~D~~~~~~--~~----~~~~~~~~~~~-~~~-----~~i~iSA~~g~gi~eL~ 284 (607)
||+|+..... .. ..+....+... ++. +++++||++|.|+.+++
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999964211 10 11222333344 543 47999999999998765
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-16 Score=176.93 Aligned_cols=166 Identities=13% Similarity=0.189 Sum_probs=111.4
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCce------------eeeeEE------------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHV------------TRDIRE------------------------ 162 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~------------T~~~~~------------------------ 162 (607)
..++|+|+|.+|||||||+|+|+|.+...++..|+..+ |++...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 35789999999999999999999988777766665210 222100
Q ss_pred ---------------EEeeeCC----eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH
Q 007334 163 ---------------GLAKLGD----LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE 223 (607)
Q Consensus 163 ---------------~~~~~~~----~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~ 223 (607)
..+.+.. ..+.||||||+.... .....+..++..||++|+|+|++++.+..+..
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-------~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~ 220 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-------ARNELSLGYVNNCHAILFVMRASQPCTLGERR 220 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-------TCHHHHTHHHHSSSEEEEEEETTSTTCHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-------hHHHHHHHHHHhCCEEEEEEeCCCccchhHHH
Confidence 0000000 469999999987321 12355677889999999999999988887755
Q ss_pred HH-HHHHhhCCCCcEEEEecCCCcccCC---cCc---HH----HHH----HHHHhc-C-------CCCcEEeecC-----
Q 007334 224 VG-KWLRKHAPQIKPIVAMNKCESLHNG---TGS---LA----GAA----AESLML-G-------FGDPIAISAE----- 275 (607)
Q Consensus 224 ~~-~~l~~~~~~~p~ilV~NK~D~~~~~---~~~---~~----~~~----~~~~~~-~-------~~~~i~iSA~----- 275 (607)
.. +.+... +.|+++|+||+|+.... ... .. ... ...... + ..+++++||+
T Consensus 221 ~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~ 298 (695)
T 2j69_A 221 YLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRR 298 (695)
T ss_dssp HHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHH
T ss_pred HHHHHHHhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHh
Confidence 33 344433 67899999999997643 111 00 010 011111 1 1257999999
Q ss_pred ---------CCCChHHHHHHhccchHH
Q 007334 276 ---------TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ---------~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|+++|++.|.+.+..
T Consensus 299 ~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 299 RLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred hccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999876643
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-16 Score=176.60 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=111.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceee----------------------------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTR---------------------------------------- 158 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~---------------------------------------- 158 (607)
..|+|++||++|+|||||+|+|+|..+...+..+ +|+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~---~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~ 126 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI---VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 126 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC---SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc---ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHh
Confidence 4799999999999999999999997642122111 222
Q ss_pred -----------eeEEEEeee-CCeeEEEecCCCCccccC---chhHHHHHHHHHHHHh-hccCEEEEEEecCCCCCHhHH
Q 007334 159 -----------DIREGLAKL-GDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVL-AKTQFAIFMIDVRSGLHPLDL 222 (607)
Q Consensus 159 -----------~~~~~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~-~~ad~vl~VvD~s~~~~~~~~ 222 (607)
+.....+.. ....+.||||||+..... .......+...+..++ ..+|++++|+|++.+....+.
T Consensus 127 ~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 127 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred hhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 111111111 234689999999985321 1122223444555555 578999999999998887775
Q ss_pred -HHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHH--hcCCCCcEEeecCCCCChHHHHHHhcc
Q 007334 223 -EVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESL--MLGFGDPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 223 -~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~~~~~~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
.+++++... +.|+|+|+||+|+................ ..++.+++++||++|.|+++|++.|.+
T Consensus 207 l~ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 207 LKIAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHHCTT--CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHHhc--CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 577777665 78999999999998754332111110011 124446789999999999999998875
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-16 Score=156.94 Aligned_cols=75 Identities=16% Similarity=0.113 Sum_probs=52.8
Q ss_pred hccEEEEEeccchh-------------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 405 RAHVVALVLDAEEV-------------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 405 ~ad~~llViD~~~~-------------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+||++|+|+|+++. .. ...++|+++|+||+|+.+... .+.. .++.. ...++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----v~~~-----~~~~~---~~~~~ 229 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----IRDA-----HTFAL---SKKNL 229 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----HHHH-----HHHHH---TSSSC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH----HHHH-----HHHHH---hcCCC
Confidence 59999999999862 11 124799999999999964311 1111 11111 11367
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++||++|.|++++|+.|.+.+
T Consensus 230 ~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 230 QVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 899999999999999999988754
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=173.26 Aligned_cols=116 Identities=18% Similarity=0.194 Sum_probs=87.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee-----e------cc------CCCCceeeeeEEEEeeeCCeeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL-----V------YN------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v------~~------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~ 182 (607)
.++|+|+|++|+|||||+|+|+.....+ + .+ ..+ .|.......+.+.+..++||||||+.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~g--iTi~~~~~~~~~~~~~i~liDTPG~~- 88 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERG--ITITAAVTTCFWKDHRINIIDTPGHV- 88 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------CCEEEEEETTEEEEEECCCSST-
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcc--cccccceEEEEECCeEEEEEECcCcc-
Confidence 5789999999999999999998432111 1 11 223 55666666677789999999999997
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
++...+..++..+|++|+|+|++++.+.+...+...+... ++|+++|+||+|+...
T Consensus 89 ---------df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 ---------DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp ---------TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEECTTSTTC
T ss_pred ---------chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc--CCCEEEEEECCCcccC
Confidence 3455667788999999999999999998887776666665 7899999999998754
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=151.35 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=92.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.++|+++|.+|||||||+|+|++.....+++.++ +|.+.........+..+.+|||||+........ .+......
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~---~~~~~i~~ 113 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQS--EGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIND---MALNIIKS 113 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSC--CCSSCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCC--cceeeEEEEEeeCCeEEEEEECCCCCCCccchH---HHHHHHHH
Confidence 4689999999999999999999988766666666 777777777777899999999999975432211 12222222
Q ss_pred H--hhccCEEEEEEecCC-CCCHhHHHHHHHHHhhCC-C--CcEEEEecCCCcccCC
Q 007334 200 V--LAKTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP-Q--IKPIVAMNKCESLHNG 250 (607)
Q Consensus 200 ~--~~~ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~-~--~p~ilV~NK~D~~~~~ 250 (607)
+ ...+|++++|+|++. ..+..+..+.+.+.+... + .|+++|+||+|+...+
T Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 3 347999999988865 455556667777765422 2 6999999999987643
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=171.87 Aligned_cols=217 Identities=19% Similarity=0.214 Sum_probs=125.6
Q ss_pred EEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc
Q 007334 270 IAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 349 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~ 349 (607)
-..++..+.|+++|...+.+... .+..+ . . ...-...+|+++|.+|+|||||+|+|+|...
T Consensus 16 ~~~~~~~~~~~~~li~~inkl~d-~l~~l-g----~-------------~~~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 16 PRGSHMGNRGMEDLIPLVNRLQD-AFSAI-G----Q-------------NADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp ---------CGGGHHHHHHHHHH-HHHTT-T----C-------------CGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CcccccccccHHHHHHHHHHHHH-HHHhc-C----c-------------cccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 34567788898888876554322 11110 0 0 0011235899999999999999999998754
Q ss_pred eeecCC--------------------------------------------------CCceeeeEEEEEEE-cCeEEEEEe
Q 007334 350 VLVGPE--------------------------------------------------AGLTRDSVRVHFEY-QGRTVYLVD 378 (607)
Q Consensus 350 ~~~~~~--------------------------------------------------~gtT~~~~~~~~~~-~~~~~~liD 378 (607)
...+.- .+++.+.+...+.. +..++.|+|
T Consensus 77 LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVD 156 (772)
T 3zvr_A 77 LPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVD 156 (772)
T ss_dssp SCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEE
T ss_pred cCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEE
Confidence 222211 12222333333333 234688999
Q ss_pred cCCCcccccccCc---chhHHHHHHHHH-hhccEEEEEeccchh-----------hHHhcCCcEEEEEeCccCCCCcCch
Q 007334 379 TAGWLQREKEKGP---ASLSVMQSRKNL-MRAHVVALVLDAEEV-----------RAVEEGRGLVVIVNKMDLLSGRQNS 443 (607)
Q Consensus 379 TpG~~~~~~~~~~---~~~~~~~~~~~i-~~ad~~llViD~~~~-----------~~~~~~~p~ivv~NK~Dl~~~~~~~ 443 (607)
|||+......... ..........++ ..+|++++|+|++.. .....++|+|+|+||+|+.+.....
T Consensus 157 TPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~ 236 (772)
T 3zvr_A 157 LPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA 236 (772)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCS
T ss_pred CCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhh
Confidence 9999764211111 111112233444 468999999999864 1113478999999999998654321
Q ss_pred HHHHHHHHhcHHHHHhhCCC-CCCCCEEEcccCCCCCHHHHHHHHHHH---------HHHHhcCCChHHHHHHHHHHHHh
Q 007334 444 ALYKRVKEAVPQEIQTVIPQ-VTGIPVVFTSALEGRGRIAVMHQVIDT---------YQKWCLRLPTSRLNRWLRKVMGR 513 (607)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~iSA~~g~gv~~l~~~i~~~---------~~~~~~~~~~~~l~~~l~~~~~~ 513 (607)
. .+.. .+.+.. ..+.+++++||++|.|+++|++.+.+. +.....+..+..++++|++.+..
T Consensus 237 ~---~il~------~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~ 307 (772)
T 3zvr_A 237 R---DVLE------NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 307 (772)
T ss_dssp H---HHHT------TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred H---HHHH------HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHH
Confidence 1 0100 111111 234678999999999999999998863 23344677888888888877654
Q ss_pred C
Q 007334 514 H 514 (607)
Q Consensus 514 ~ 514 (607)
+
T Consensus 308 h 308 (772)
T 3zvr_A 308 H 308 (772)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=149.92 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=93.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+|+|++.+.+.+...++ +|.+.....+.+.+..+.||||||+........ .+......
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~---~~~~~i~~ 110 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQA--EGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNH---QALELIKG 110 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC---CCCCEEEEEEETTEEEEEEECCCSEETTEECH---HHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC--cceeeEEEEEEECCeeEEEEECCCCCCcccchH---HHHHHHHH
Confidence 4689999999999999999999988766777666 788888888888999999999999985433221 22222223
Q ss_pred Hh--hccCEEEEEEecCC-CCCHhHHHHHHHHHhhCC---CCcEEEEecCCCcccCC
Q 007334 200 VL--AKTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNG 250 (607)
Q Consensus 200 ~~--~~ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~---~~p~ilV~NK~D~~~~~ 250 (607)
++ ..+|++++|+|+.. ..+..+..+.+++.+... ..|+++|+||+|+...+
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred HHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 33 37899999988765 355556667777776522 24999999999987543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-15 Score=143.88 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=93.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC-ceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc-cCcchhH--HHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED-RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPASLS--VMQ 398 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~-~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~--~~~ 398 (607)
...+|+++|++|||||||+|+|+|.. ...+.+.+|+|.... .+.+++ .+.+|||||+...... ...+.+. ...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 35789999999999999999999875 345678888887643 334444 6789999997543111 0011111 111
Q ss_pred HHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 399 SRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
.......+|++++|+|++.+ .....++|+++|+||+|+............+.. .+ ... ...++
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~----~~-~~~--~~~~~ 174 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVRE----AV-LAF--NGDVQ 174 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHH----HH-GGG--CSCEE
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHH----HH-Hhc--CCCCc
Confidence 11222468999999999764 122358999999999998764221111111111 11 111 12457
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||+++.|++++++.+.+..
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEeecCCCCHHHHHHHHHHHH
Confidence 89999999999999998887654
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-15 Score=166.71 Aligned_cols=117 Identities=15% Similarity=0.136 Sum_probs=89.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceee-----------ecc------CCCCceeeeeEEEEeeeCC-------eeEEE
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREAL-----------VYN------TPDDHVTRDIREGLAKLGD-------LRFKV 174 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----------v~~------~~~~~~T~~~~~~~~~~~~-------~~~~l 174 (607)
..++|+|+|++|+|||||+++|+.....+ +.+ ..+ .|.......+.+.+ ..++|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rg--iTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERG--ITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcC--ceeeeceEEEEECCccccCCceeEEE
Confidence 36799999999999999999997532111 111 122 45555555566666 89999
Q ss_pred ecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 175 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
|||||+. ++...+..++..+|++|+|+|++++...+...+...+... +.|+++|+||+|+...
T Consensus 87 iDTPG~~----------df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHV----------DFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCcc----------chHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCEEEEEeCCCcccc
Confidence 9999998 4556677888999999999999999887776666666554 7899999999998753
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=164.15 Aligned_cols=106 Identities=21% Similarity=0.313 Sum_probs=78.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee---------------e------cCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL---------------V------GPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~---------------~------~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
..+|+++|++|+|||||+++|++....+ + ....|+|.+.....+.+.+..+.||||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 4789999999999999999999642111 1 124566666666678889999999999998
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
.++. ..+.+++..+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 93 ~df~----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 93 EDFS----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp TTCC----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred hhHH----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 6552 2345678899999999999875 122358999999999999764
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=148.49 Aligned_cols=135 Identities=19% Similarity=0.255 Sum_probs=80.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCcee--ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVL--VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~--~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++..... .+..++++.+. .+..+.+|||||+.+.. ....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~----------~~~~ 73 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR----------YKLS 73 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGT----------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHH----------HHHH
Confidence 35799999999999999999999875321 12333333332 56688999999975442 1122
Q ss_pred HHHhh----ccEEEEEeccc-hh-----------hH-------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH
Q 007334 401 KNLMR----AHVVALVLDAE-EV-----------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457 (607)
Q Consensus 401 ~~i~~----ad~~llViD~~-~~-----------~~-------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 457 (607)
.+++. +|++|+|+|++ +. .. ...++|+++|+||+|+..........+.+.+.+. .+
T Consensus 74 ~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~-~~ 152 (218)
T 1nrj_B 74 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQ-KV 152 (218)
T ss_dssp HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHH-HH
T ss_pred HHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHH-HH
Confidence 33333 89999999998 32 11 1248999999999999876543333222222211 11
Q ss_pred HhhCCCCCCCCEEEcccCCCCC
Q 007334 458 QTVIPQVTGIPVVFTSALEGRG 479 (607)
Q Consensus 458 ~~~~~~~~~~~~v~iSA~~g~g 479 (607)
.. ..+.+++++||++|.+
T Consensus 153 ~~----~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 153 IE----RRKKSLNEVERKINEE 170 (218)
T ss_dssp HH----HHHHHHHC--------
T ss_pred HH----HHhccccccccccccc
Confidence 11 1235788999999876
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=152.70 Aligned_cols=145 Identities=20% Similarity=0.260 Sum_probs=97.7
Q ss_pred HHhhccCEEEEEEecCCCC-CHhHH-HHHHHHHhhCCCCcEEEEecCCCcccCCcCc-HHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGL-HPLDL-EVGKWLRKHAPQIKPIVAMNKCESLHNGTGS-LAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~-~~~~~-~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~-~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.+++++|++++|+|++++. +.... .++..+.. .++|+++|+||+|+.+..... .......+...++ +++++||+
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~-~~~~~SA~ 151 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY-DVLKVSAK 151 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC-eEEEEECC
Confidence 4689999999999999875 54431 12233343 378999999999997642111 2223334445677 78999999
Q ss_pred CCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCC
Q 007334 276 TGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE 355 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~ 355 (607)
+|.|+++|++.+.. -.++++|++|||||||+|.|+ .....++..
T Consensus 152 ~g~gi~~L~~~l~G-----------------------------------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i 195 (302)
T 2yv5_A 152 TGEGIDELVDYLEG-----------------------------------FICILAGPSGVGKSSILSRLT-GEELRTQEV 195 (302)
T ss_dssp TCTTHHHHHHHTTT-----------------------------------CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC
T ss_pred CCCCHHHHHhhccC-----------------------------------cEEEEECCCCCCHHHHHHHHH-HhhCccccc
Confidence 99999999886542 247999999999999999998 654444443
Q ss_pred CC-------ceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 356 AG-------LTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 356 ~g-------tT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
.. +|+... .+...+ --.++||||+...
T Consensus 196 ~~~~~~G~~~t~~~~--~~~~~~-~g~v~d~pg~~~~ 229 (302)
T 2yv5_A 196 SEKTERGRHTTTGVR--LIPFGK-GSFVGDTPGFSKV 229 (302)
T ss_dssp ---------CCCCEE--EEEETT-TEEEESSCCCSSC
T ss_pred ccccCCCCCceeeEE--EEEcCC-CcEEEECcCcCcC
Confidence 32 343321 122222 2368999998643
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=159.18 Aligned_cols=164 Identities=16% Similarity=0.195 Sum_probs=103.9
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeee---------------------------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRD--------------------------------------- 159 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~--------------------------------------- 159 (607)
.+|.|+|||.+|||||||+|+|+|..+...+... +|+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~---vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI---VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQD 109 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS---CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc---ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHH
Confidence 3689999999999999999999997642111110 1111
Q ss_pred ---------------eEEEE-eeeCCeeEEEecCCCCccccC---chhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHh
Q 007334 160 ---------------IREGL-AKLGDLRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPL 220 (607)
Q Consensus 160 ---------------~~~~~-~~~~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~ 220 (607)
..... .......+.+|||||+..... ...........+..++..+|++|+|+|.+......
T Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~ 189 (360)
T 3t34_A 110 ETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT 189 (360)
T ss_dssp HHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG
T ss_pred HHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC
Confidence 00111 111245799999999985421 22333456677888999999999999876533222
Q ss_pred HHHHHHHHHhhC-CCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHh
Q 007334 221 DLEVGKWLRKHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287 (607)
Q Consensus 221 ~~~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i 287 (607)
..+..+++... .+.|+|+|+||+|+.................++. .++++|+.++.|+++.++.+
T Consensus 190 -~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 190 -SDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp -CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred -HHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence 22344444432 2679999999999987544332222111223344 67999999999988765543
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=147.72 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=83.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.++|+++|.+|||||||+|+|++.....+++++++|.+.....+.+++..+.||||||+.++.... +.+ .....+++
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~--~~~-~~~i~~~l 112 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN--HQA-LELIKGFL 112 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC--HHH-HHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch--HHH-HHHHHHHH
Confidence 589999999999999999999998777888999999999888889999999999999987653111 111 11111122
Q ss_pred --hhccEEEEEeccchh----------hHH----hc--CCcEEEEEeCccCCCC
Q 007334 404 --MRAHVVALVLDAEEV----------RAV----EE--GRGLVVIVNKMDLLSG 439 (607)
Q Consensus 404 --~~ad~~llViD~~~~----------~~~----~~--~~p~ivv~NK~Dl~~~ 439 (607)
..+|++|+|+|++.. ..+ .. .+|+++|+||+|+...
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 278999999776542 011 11 2499999999999643
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-15 Score=167.68 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=77.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----------eecC------CCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----------LVGP------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----------~~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..+|+|+|++|+|||||+|+|++.... .+.+ .+|+|+......+.+++..+.||||||+.++.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 89 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT 89 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH
Confidence 468999999999999999999942111 1112 35777777777788899999999999986542
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+.++++.+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 90 ----------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 90 ----------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp ----------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ----------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 2345678889999999999875 233468999999999999764
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.7e-15 Score=166.01 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=89.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee-----e------cc------CCCCceeeeeEEEEeeeCCeeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL-----V------YN------TPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v------~~------~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~ 182 (607)
..+|+|+|++|+|||||+++|++....+ + .+ ..+ +|.......+.+.+..++||||||+.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~g--iti~~~~~~~~~~~~~~nliDTpG~~- 85 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHR--TTVRTGVAPLLFRGHRVFLLDAPGYG- 85 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTT--SCCSCEEEEEEETTEEEEEEECCCSG-
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcC--CeEEecceEEeeCCEEEEEEeCCCcc-
Confidence 4689999999999999999999543210 0 00 012 45555556666788999999999998
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
++...+..++..+|++++|+|++++.......+...+... +.|+++|+||+|+.
T Consensus 86 ---------~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 ---------DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp ---------GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred ---------chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc--cCCEEEEecCCchh
Confidence 4455677888999999999999999988887777777765 78999999999987
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=146.59 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=84.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH-
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN- 402 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~- 402 (607)
.++|+++|.+|+|||||+|+|++.....+++.+++|.+.....+..++..+.||||||+.+..... ..+ .....++
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~--~~~-~~~i~~~~ 115 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN--DMA-LNIIKSFL 115 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC--HHH-HHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccch--HHH-HHHHHHHh
Confidence 589999999999999999999998777788999999998888888899999999999986652110 011 0111122
Q ss_pred -HhhccEEEEEeccchh----------hHH-h-cC----CcEEEEEeCccCCCCc
Q 007334 403 -LMRAHVVALVLDAEEV----------RAV-E-EG----RGLVVIVNKMDLLSGR 440 (607)
Q Consensus 403 -i~~ad~~llViD~~~~----------~~~-~-~~----~p~ivv~NK~Dl~~~~ 440 (607)
...+|++|+|+|++.. ..+ . .+ +|+++|+||+|+.+.+
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2369999999776532 111 1 12 6999999999997653
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-15 Score=158.26 Aligned_cols=153 Identities=21% Similarity=0.206 Sum_probs=91.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC------Ccee-------------------------------ecCCC------Ccee
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE------DRVL-------------------------------VGPEA------GLTR 360 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~------~~~~-------------------------------~~~~~------gtT~ 360 (607)
...|+|+|+||||||||+|+|++. .... +.+.+ |+|+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 468999999999999999999962 1112 22222 2333
Q ss_pred eeEEEE--EEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhhH---H---hcCCcEEEEEe
Q 007334 361 DSVRVH--FEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRA---V---EEGRGLVVIVN 432 (607)
Q Consensus 361 ~~~~~~--~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~~---~---~~~~p~ivv~N 432 (607)
+..... +...+..+.|+||||+.... ......+|++++|+|++.+.. . -...|.++|+|
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~~-------------~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlN 220 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQSE-------------FAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVT 220 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--CH-------------HHHHTTCSEEEEEECCC------------CCSCSEEEEC
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchhh-------------hhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEe
Confidence 211110 11356789999999975321 122457999999999986511 1 13568899999
Q ss_pred CccCCCCcCchHHHHHHHHhcHHHHHhhCC--CCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIP--QVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 433 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
|+|+.+.... ......+...+....+ ..+..+++++||++|.|++++++.|.+.+..
T Consensus 221 K~Dl~~~~~~----~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 221 KSDGDLIVPA----RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CCSGGGHHHH----HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eecCCCchhH----HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9998643111 1111112111111111 1224689999999999999999999887643
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=8.3e-15 Score=153.74 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=109.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCcee--------------------------------------------
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR-------------------------------------------- 360 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~-------------------------------------------- 360 (607)
.+|++||.+|||||||+|+|+|......+ ...+|+
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~-~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCC-SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCC-CCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 38999999999999999999986532111 111121
Q ss_pred ----------eeEEEEEEE-cCeEEEEEecCCCccccc---ccCcchhHHHHHHHHHhhccEEEEEeccchh--------
Q 007334 361 ----------DSVRVHFEY-QGRTVYLVDTAGWLQREK---EKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------- 418 (607)
Q Consensus 361 ----------~~~~~~~~~-~~~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------- 418 (607)
+.+...+.. ....+.||||||+.+... ...........+..++.++|++|+|+|++..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~ 193 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAI 193 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHH
Confidence 111111111 244789999999877522 1122233345667889999999999987532
Q ss_pred ----hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH--
Q 007334 419 ----RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ-- 492 (607)
Q Consensus 419 ----~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~-- 492 (607)
.....++|+|+|+||+|+.+..... .++.+......+.+++++|+.++.++++.+..+.....
T Consensus 194 ~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~e~ 262 (360)
T 3t34_A 194 KISREVDPSGDRTFGVLTKIDLMDKGTDA-----------VEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKRER 262 (360)
T ss_dssp HHHHHSCTTCTTEEEEEECGGGCCTTCCS-----------HHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccCCCEEEEEeCCccCCCcccH-----------HHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHHHH
Confidence 1113478999999999998653211 11122233445678999999999988876544322211
Q ss_pred ----------HHhcCCChHHHHHHHHHHHHh
Q 007334 493 ----------KWCLRLPTSRLNRWLRKVMGR 513 (607)
Q Consensus 493 ----------~~~~~~~~~~l~~~l~~~~~~ 513 (607)
....+..+..|...|.+.+..
T Consensus 263 ~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~ 293 (360)
T 3t34_A 263 EYFSNTTEYRHLANKMGSEHLAKMLSKHLER 293 (360)
T ss_dssp HHHTTCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred HHhcCCCccccchhhcCHHHHHHHHHHHHHH
Confidence 112345666666666555543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=153.47 Aligned_cols=152 Identities=27% Similarity=0.330 Sum_probs=110.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
-.|+|+|++|||||||+++|++.. ..+.+++++|.++..+.+.+++ ..+.++||||+.+..... ..+. ....+.+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~--~~L~-~~fl~~~ 233 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG--KGLG-LEFLRHI 233 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS--CCSC-HHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccccchhhh--hhhh-HHHHHHH
Confidence 468999999999999999999874 4677899999988888887776 789999999986541110 0111 1234566
Q ss_pred hhccEEEEEeccc-hh---------hH--H---hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAE-EV---------RA--V---EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~-~~---------~~--~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|.+|+|+|++ +. +. + ...+|.++|+||+|+... ..++.+. ..+. ..+.+
T Consensus 234 era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~----~~~~~l~----~~l~-----~~g~~ 300 (416)
T 1udx_A 234 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE----EAVKALA----DALA-----REGLA 300 (416)
T ss_dssp TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH----HHHHHHH----HHHH-----TTTSC
T ss_pred HHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH----HHHHHHH----HHHH-----hcCCe
Confidence 7899999999996 32 11 1 236899999999998753 1222221 1111 12568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++||+++.|++++++.|.+.+.+
T Consensus 301 vi~iSA~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 301 VLPVSALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEECCCccCHHHHHHHHHHHHHh
Confidence 9999999999999999999887764
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=164.88 Aligned_cols=107 Identities=17% Similarity=0.200 Sum_probs=77.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce-----e------ecC------CCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV-----L------VGP------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~-----~------~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
...+|+|+|++|+|||||+++|+..... . +.+ ..|+|.......+.+.+..+.||||||+.++
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 3478999999999999999999842111 0 111 4567777767778889999999999998654
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
. ..+.++++.+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 91 ~----------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 91 T----------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp H----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred H----------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 2 2345778899999999999875 233468999999999999764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.2e-15 Score=138.72 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce--eecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV--LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~--~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..++|+++|.+|||||||+|+|++.... ..+..++++.+. .+..+.+|||||+..... .......
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~------~~~~~~~ 113 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRY------KLSDYLK 113 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSC------CHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHH------HHHHHHH
Confidence 3579999999999999999999987532 123334444332 567888999999765421 1112223
Q ss_pred HHHhhccEEEEEeccc-hh-----------hH-------HhcCCcEEEEEeCccCCCCcCchHHHH
Q 007334 401 KNLMRAHVVALVLDAE-EV-----------RA-------VEEGRGLVVIVNKMDLLSGRQNSALYK 447 (607)
Q Consensus 401 ~~i~~ad~~llViD~~-~~-----------~~-------~~~~~p~ivv~NK~Dl~~~~~~~~~~~ 447 (607)
..+..+|++|+|+|++ +. .. ...++|+++|+||+|+.+.....+..+
T Consensus 114 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 114 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp HHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred hhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 3445599999999998 43 01 113899999999999987655443333
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=162.41 Aligned_cols=106 Identities=21% Similarity=0.228 Sum_probs=80.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce-----------eecC------CCCceeeeEEEEEEEcC-------eEEEEEec
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV-----------LVGP------EAGLTRDSVRVHFEYQG-------RTVYLVDT 379 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~-----------~~~~------~~gtT~~~~~~~~~~~~-------~~~~liDT 379 (607)
..+|+|+|++|+|||||+++|+..... .+.+ ..|+|.......+.+.+ ..+.||||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 478999999999999999999753211 1111 35677776666777777 88999999
Q ss_pred CCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 380 AGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 380 pG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
||+.++. ..+.++++.+|++|+|+|++++ .....++|+++|+||+|+...
T Consensus 90 PG~~df~----------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 90 PGHVDFT----------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCccchH----------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 9986542 2345678889999999999875 233468999999999998754
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-15 Score=157.21 Aligned_cols=153 Identities=26% Similarity=0.278 Sum_probs=94.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC------CceeecCCCCcee-------ee-----------EE---------------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE------DRVLVGPEAGLTR-------DS-----------VR--------------- 364 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~------~~~~~~~~~gtT~-------~~-----------~~--------------- 364 (607)
...|+++|.||||||||+++|... ....+...|+.+. +. ..
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 158 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVTR 158 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchhH
Confidence 468999999999999999999632 2222222222221 00 00
Q ss_pred ------EEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhh---HH---hcCCcEEEEEe
Q 007334 365 ------VHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVR---AV---EEGRGLVVIVN 432 (607)
Q Consensus 365 ------~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~---~~---~~~~p~ivv~N 432 (607)
..+...+..+.||||||+.+. ....+..+|++|+|+|++... .. ...+|+++|+|
T Consensus 159 ~t~d~i~~~~~~~~~~iiiDTpGi~~~-------------~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlN 225 (355)
T 3p32_A 159 ATRETVVLLEAAGFDVILIETVGVGQS-------------EVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVN 225 (355)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCSSH-------------HHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEE
T ss_pred HHHHHHHHHhhCCCCEEEEeCCCCCcH-------------HHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEE
Confidence 001224678999999996432 112347899999999987651 11 12469999999
Q ss_pred CccCCCCcCchHHHHHHHHhcHHHHHhhCC--CCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIP--QVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 433 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
|+|+...... ....+.+...+...-. ..++.|++++||++|.|++++++.|.+.+..
T Consensus 226 K~Dl~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 226 KADGEHHKEA----RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCCGGGHHHH----HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCCcChhHH----HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 9998643221 1112222222221111 1235789999999999999999999887654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-15 Score=155.78 Aligned_cols=154 Identities=18% Similarity=0.242 Sum_probs=90.7
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCC-----------------------c------------ee
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDD-----------------------H------------VT 157 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~-----------------------~------------~T 157 (607)
..+.|+|+|+||||||||+|+|++. +.+++...|.. + +|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3679999999999999999999962 33333322220 0 11
Q ss_pred eeeEEEE--eeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCC
Q 007334 158 RDIREGL--AKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI 235 (607)
Q Consensus 158 ~~~~~~~--~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~ 235 (607)
++..... +...+..+.++||||+... . ......+|++++|+|++.+..... +...+ ...
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~--------~-----~~l~~~~d~vl~V~d~~~~~~~~~--i~~~i----l~~ 213 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQS--------E-----FAVADMVDMFVLLLPPAGGDELQG--IKRGI----IEM 213 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--C--------H-----HHHHTTCSEEEEEECCC------------------CCS
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchh--------h-----hhHHhhCCEEEEEEcCCcchhHHH--hHHHH----Hhc
Confidence 1111000 1235778999999998621 1 123578999999999987642221 11111 146
Q ss_pred cEEEEecCCCcccCCcCcHHHHHHHHH---h-------cCCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 236 KPIVAMNKCESLHNGTGSLAGAAAESL---M-------LGFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 236 p~ilV~NK~D~~~~~~~~~~~~~~~~~---~-------~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
|.++|+||+|+..... .......+. . ....+++++||++|.|+++|++.|.+.++.
T Consensus 214 ~~ivVlNK~Dl~~~~~--~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 214 ADLVAVTKSDGDLIVP--ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSEEEECCCSGGGHHH--HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEEeeecCCCchh--HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 8899999999874211 001111111 1 112356899999999999999999887643
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=152.27 Aligned_cols=159 Identities=20% Similarity=0.229 Sum_probs=76.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCC--------CCceeeeEEEEEEEcCe--EEEEEecCCCcccccc-c---
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE--------AGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKE-K--- 389 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~--------~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~-~--- 389 (607)
.++|+++|++|+|||||+|+|++...+..... ++++.+.....+..++. .+.+|||||+.+.... +
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 47899999999999999999987654433221 33344444444444554 6789999998554211 1
Q ss_pred CcchhHHHHHHHHHhh-------------ccEEEEEeccc-hh---------hHHhcCCcEEEEEeCccCCCCcCchHHH
Q 007334 390 GPASLSVMQSRKNLMR-------------AHVVALVLDAE-EV---------RAVEEGRGLVVIVNKMDLLSGRQNSALY 446 (607)
Q Consensus 390 ~~~~~~~~~~~~~i~~-------------ad~~llViD~~-~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 446 (607)
....+...+...+++. +|++++++|.+ .. .....++|+|+|+||+|+......
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev---- 192 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKER---- 192 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHH----
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHH----
Confidence 1111111111233333 25677777752 22 122357899999999999864221
Q ss_pred HHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
..+ ..++...+ ...+++++++||++|.| ++.|..+.+.+.
T Consensus 193 ~~~----k~~i~~~~-~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 193 ERL----KKRILDEI-EEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHH----HHHHHHHT-TCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHH----HHHHHHHH-HHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 111 12222232 23468999999999999 777777666543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.9e-15 Score=152.86 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=80.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCC------CCceeeeeEEEEeeeCCe--eEEEecCCCCccccCc----h
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTP------DDHVTRDIREGLAKLGDL--RFKVLDSAGLETEATS----G 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~------~~~~T~~~~~~~~~~~~~--~~~liDTpG~~~~~~~----~ 187 (607)
.++|+|||.+|||||||+|+|++.........+ ..+++.+.....+...+. .+.+|||||+...... .
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 368999999999999999999876432221111 111333332222333443 7899999999532110 0
Q ss_pred hHHHHHHHHHHHHhhcc-------------CEEEEEEec-CCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc
Q 007334 188 SILDRTAGMTANVLAKT-------------QFAIFMIDV-RSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~a-------------d~vl~VvD~-s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
.+......+...++..+ |++++++|. .++....+..+.+.+ ..+.|+|+|+||+|+...+...
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence 11110111112334332 457777765 556676665554444 3478999999999998643221
Q ss_pred H--HHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 254 L--AGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 254 ~--~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
. ......+...++ +++++||++|.| ++.+..+.+.+.
T Consensus 194 ~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 194 RLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHH
Confidence 1 122233334455 789999999998 776666655543
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-15 Score=151.86 Aligned_cols=89 Identities=27% Similarity=0.287 Sum_probs=65.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~ 386 (607)
.++|++||.||||||||+|+|++.. +.++++|++|+++..+.+.+++ ..+.||||||+.+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 4689999999999999999999875 7788999999998777777665 479999999987652
Q ss_pred c-ccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 387 K-EKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 387 ~-~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
. ..+.. ...+.+++.+|++++|+|+++
T Consensus 81 ~~~~gl~----~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLG----NKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGT----CCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHH----HHHHHHHHhcCeEEEEEecCC
Confidence 1 11111 123467889999999999974
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=158.79 Aligned_cols=116 Identities=20% Similarity=0.198 Sum_probs=91.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee---------------eecc------CCCCceeeeeEEEEeeeCCeeEEEecCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA---------------LVYN------TPDDHVTRDIREGLAKLGDLRFKVLDSA 178 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~---------------~v~~------~~~~~~T~~~~~~~~~~~~~~~~liDTp 178 (607)
..+|+|||+.++|||||..+|+-...+ .+.| ..| .|.......+.|++..++|||||
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRG--ITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERG--ISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCC--CcEeeceEEEEECCEEEEEEeCC
Confidence 468999999999999999999722111 1111 122 44455556678899999999999
Q ss_pred CCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 179 GLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 179 G~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
|+. +|...+...++-+|.+|+|+|+.+|+..+...+.+.+.+. ++|.|+++||+|....
T Consensus 109 GHv----------DF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~--~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQ----------DFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR--ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGG----------GCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT--TCCEEEEEECTTSCCC
T ss_pred CcH----------HHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh--CCceEEEEecccchhc
Confidence 999 5667778889999999999999999999998888888887 8999999999997653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=160.12 Aligned_cols=104 Identities=26% Similarity=0.265 Sum_probs=80.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee-----------ecC------CCCceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL-----------VGP------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~-----------~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
..+|+++|++|+|||||+++|++..... +.+ ..|+|.......+.+.+..+.||||||+.++.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 4689999999999999999999542210 111 23667777777788889999999999975542
Q ss_pred cccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCC
Q 007334 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLL 437 (607)
Q Consensus 387 ~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~ 437 (607)
..+..+++.+|++++|+|++++ .....++|+++|+||+|+.
T Consensus 89 ----------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 89 ----------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp ----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred ----------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 2355778899999999999875 2334689999999999997
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=155.55 Aligned_cols=106 Identities=26% Similarity=0.348 Sum_probs=81.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce---------------------eecCCCCceeeeEEEEEEEcCeEEEEEecCCC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV---------------------LVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~---------------------~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~ 382 (607)
..+|+|+|+.++|||||..+|+..... .....-|+|.......+.|++..+.|+||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 357999999999999999999732111 12223477777777889999999999999999
Q ss_pred cccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
.++. ..+.++++-+|++|+|+|+.++ .+.+.++|.|+++||+|....
T Consensus 111 vDF~----------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 111 QDFS----------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGCS----------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred HHHH----------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 8884 3456788899999999999987 455679999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=138.22 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=74.2
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceee--eccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREAL--VYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~--v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
...++|+++|.+|||||||+|+|++..... ....+. ++.+. .+..+.+|||||+...... ...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~--~~~~~-------~~~~~~l~Dt~G~~~~~~~------~~~ 110 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL--SAADY-------DGSGVTLVDFPGHVKLRYK------LSD 110 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------CC-------CCTTCSEEEETTCCBSSCC------HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCc--eeeee-------cCCeEEEEECCCCchHHHH------HHH
Confidence 446899999999999999999999876422 111222 33222 5678999999999743321 112
Q ss_pred HHHHHhhccCEEEEEEecC-CCCCHhH--HHHHHHHHh----hCCCCcEEEEecCCCcccCC
Q 007334 196 MTANVLAKTQFAIFMIDVR-SGLHPLD--LEVGKWLRK----HAPQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s-~~~~~~~--~~~~~~l~~----~~~~~p~ilV~NK~D~~~~~ 250 (607)
.....+..+|++++|+|++ +..+... ..+..++.. ...+.|+++|+||+|+....
T Consensus 111 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 111 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 2233456699999999998 3322222 112222222 12478999999999998654
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7e-15 Score=153.86 Aligned_cols=154 Identities=22% Similarity=0.264 Sum_probs=95.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCceee-----e------------eEE-------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDHVTR-----D------------IRE------------- 162 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~~T~-----~------------~~~------------- 162 (607)
..++|+|+|.||||||||+++|+. .+...+...|....+. + ...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 357899999999999999999973 3444443333211100 0 000
Q ss_pred -------EEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCC
Q 007334 163 -------GLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI 235 (607)
Q Consensus 163 -------~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~ 235 (607)
..+...+..+.||||||+.. . ....+..+|++++|+|.+.+..... +... ..+.
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~----------~---~~~~~~~aD~vl~V~d~~~~~~~~~--l~~~----~~~~ 218 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQ----------S---EVAVANMVDTFVLLTLARTGDQLQG--IKKG----VLEL 218 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSS----------H---HHHHHTTCSEEEEEEESSTTCTTTT--CCTT----SGGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCc----------H---HHHHHHhCCEEEEEECCCCCccHHH--HHHh----Hhhc
Confidence 00123567899999999762 1 1123588999999999876543321 1111 1246
Q ss_pred cEEEEecCCCcccCCcCcHHHHHHHHH----hc-----CC-CCcEEeecCCCCChHHHHHHhccchHH
Q 007334 236 KPIVAMNKCESLHNGTGSLAGAAAESL----ML-----GF-GDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 236 p~ilV~NK~D~~~~~~~~~~~~~~~~~----~~-----~~-~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
|.++|+||+|+...... ......+. .. ++ .+++++||++|.|+++|++.|.+.++.
T Consensus 219 p~ivVlNK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 219 ADIVVVNKADGEHHKEA--RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CSEEEEECCCGGGHHHH--HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCcChhHH--HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999999998753211 11111111 11 11 368999999999999999999887754
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=147.03 Aligned_cols=89 Identities=27% Similarity=0.301 Sum_probs=63.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-----------------eeEEEecCCCCccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-----------------LRFKVLDSAGLETE 183 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 183 (607)
.+|+|||.||||||||+|+|++.. +.+.+.|+ +|.+...+.+.+.+ ..+.+|||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~--tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPF--CTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CC--CCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCC--ceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 589999999999999999999976 55677777 78887777666655 46999999999843
Q ss_pred cCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 184 ATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
...+.. .....+.+++.+|++++|+|+++
T Consensus 80 a~~~~g---l~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEG---LGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGG---GTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccccch---HHHHHHHHHHhcCeEEEEEecCC
Confidence 211100 11233567899999999999986
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=146.85 Aligned_cols=89 Identities=31% Similarity=0.309 Sum_probs=68.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE---------------------cCeEEEEEecCCCc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY---------------------QGRTVYLVDTAGWL 383 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~---------------------~~~~~~liDTpG~~ 383 (607)
++|++||.||||||||+|+|++.. ..+.++|++|.++..+...+ .+..+.||||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999863 56788999998877666543 24579999999997
Q ss_pred ccccccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
+.... .+.+. ...+.+++.||++++|+|+++
T Consensus 81 ~~a~~--~~~lg-~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHK--GEGLG-NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCS--SSCTT-HHHHHHHHTCSEEEEEEECCC
T ss_pred ccccc--cchHH-HHHHHHHHhCCEEEEEEECCC
Confidence 65211 11121 344567899999999999974
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-14 Score=145.56 Aligned_cols=151 Identities=22% Similarity=0.192 Sum_probs=93.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhc------CCceeecCCCCceee--------------------eEEEE-----------
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ------EDRVLVGPEAGLTRD--------------------SVRVH----------- 366 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~------~~~~~~~~~~gtT~~--------------------~~~~~----------- 366 (607)
...|+++|+||+|||||+|.|++ .....+...+++|.. ++...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~ 135 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 135 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHH
Confidence 46799999999999999999963 333444444444321 00000
Q ss_pred --------EEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhhH------HhcCCcEEEEEe
Q 007334 367 --------FEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRA------VEEGRGLVVIVN 432 (607)
Q Consensus 367 --------~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~~------~~~~~p~ivv~N 432 (607)
+.+.+.++.||||||+.+.. ......+|++++|+|++.+.. ...++|.++|+|
T Consensus 136 ~~~~~~~~~~~~~~~i~liDTpG~~~~~-------------~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~N 202 (341)
T 2p67_A 136 RARELMLLCEAAGYDVVIVETVGVGQSE-------------TEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVIN 202 (341)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEECCTTHH-------------HHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEEC
T ss_pred HHHHHHHHhhccCCCEEEEeCCCccchH-------------HHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEE
Confidence 01346789999999976431 013468999999999976511 112578999999
Q ss_pred CccCCCCcCchHHHHHHHHhcHHHHHhhCC---CCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIP---QVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 433 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
|+|+..... +....+.+...+. .+. ..+..+++++||++|.|++++++.|.+.+.
T Consensus 203 K~Dl~~~~~----~~~~~~~l~~~l~-~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 203 KDDGDNHTN----VAIARHMYESALH-ILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCTTCHHH----HHHHHHHHHHHHH-HSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCChHH----HHHHHHHHHHHHH-hccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999975311 1111111211111 111 112457899999999999999999987654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-15 Score=149.24 Aligned_cols=145 Identities=18% Similarity=0.261 Sum_probs=95.2
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCc--CcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGT--GSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~--~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+.++|.+++|+|+..|....+ .+.++|... ..++|.++|+||+|+.+... .........+...|+ +++.+||.+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~-~v~~~sa~~ 160 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY-DVYLTSSKD 160 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC-CEEECCHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 5789999999999998777666 555666432 34789999999999987521 011223334446788 899999999
Q ss_pred CCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCC
Q 007334 277 GLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA 356 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~ 356 (607)
|.|+++|++... .-.++++|++|||||||+|.|+|.....++...
T Consensus 161 ~~g~~~L~~~~~-----------------------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 161 QDSLADIIPHFQ-----------------------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp HTTCTTTGGGGT-----------------------------------TSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCHHHHHhhcC-----------------------------------CCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 999887654321 126899999999999999999987554444433
Q ss_pred -------CceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 357 -------GLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 357 -------gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
++|++.. .+... ...++||||+..+
T Consensus 206 ~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 206 EHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSSL 237 (307)
T ss_dssp ---------CCCCC--EEEET--TEEEESSCSCSSC
T ss_pred eecCCCcccccHHH--HhhcC--CEEEecCCCcccc
Confidence 3444432 12222 2468999998664
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-14 Score=160.90 Aligned_cols=162 Identities=16% Similarity=0.158 Sum_probs=119.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee-----e------ccCCC----CceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL-----V------YNTPD----DHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v------~~~~~----~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
+.+|+|+|+.++|||||..+|+-....+ + .|... .+.|.......+.|++..++|+||||+.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~--- 78 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHM--- 78 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSS---
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcH---
Confidence 5689999999999999999997332111 1 11100 0144444555667889999999999999
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHH-------
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGA------- 257 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~------- 257 (607)
+|...+...++-+|++|+|+|+.+|+..+...+.+.+.+. ++|.|+++||+|....+.......
T Consensus 79 -------DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~ 149 (638)
T 3j25_A 79 -------DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLSA 149 (638)
T ss_dssp -------STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTCC
T ss_pred -------HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhCC
Confidence 5677788899999999999999999999998888888887 889999999999765331100000
Q ss_pred ------------------------------------------------------HHHHHhcCCCCcEEeecCCCCChHHH
Q 007334 258 ------------------------------------------------------AAESLMLGFGDPIAISAETGLGMTEL 283 (607)
Q Consensus 258 ------------------------------------------------------~~~~~~~~~~~~i~iSA~~g~gi~eL 283 (607)
...+....+.+++..||++|.|++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~L 229 (638)
T 3j25_A 150 EIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNL 229 (638)
T ss_dssp CCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHH
T ss_pred CccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhH
Confidence 00011123346788999999999999
Q ss_pred HHHhccchHH
Q 007334 284 YEALRPSVED 293 (607)
Q Consensus 284 ~~~i~~~l~~ 293 (607)
++.|.+.++.
T Consensus 230 Ld~i~~~~p~ 239 (638)
T 3j25_A 230 IEVITNKFYS 239 (638)
T ss_dssp HHHHHHSCCC
T ss_pred hhhhhccccC
Confidence 9999987765
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-14 Score=153.60 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=86.1
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhcccee--eeccCCCCceeeeeEEEEe------------------------------
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREA--LVYNTPDDHVTRDIREGLA------------------------------ 165 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~--~v~~~~~~~~T~~~~~~~~------------------------------ 165 (607)
...++|+|+|.+|||||||+|+|++.+.. .++..+. |++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~--T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPT--TDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCC--CCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCc--cceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 34689999999999999999999998764 4555554 3332111000
Q ss_pred ------eeCC---eeEEEecCCCCccccCchhHHH--HHHHHHHHHhhccCEEEEEEecCC-CCCHhHHHHHHHHHhhCC
Q 007334 166 ------KLGD---LRFKVLDSAGLETEATSGSILD--RTAGMTANVLAKTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP 233 (607)
Q Consensus 166 ------~~~~---~~~~liDTpG~~~~~~~~~~~~--~~~~~~~~~~~~ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~ 233 (607)
.+.+ ..+.||||||+...... .... .+...+..++..+|++|+|+|+++ +....+..+.+.+...
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~-~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQ-RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC--------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchh-HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 0000 36899999999842211 0000 144566778899999999999988 4666666666666544
Q ss_pred CCcEEEEecCCCcccC
Q 007334 234 QIKPIVAMNKCESLHN 249 (607)
Q Consensus 234 ~~p~ilV~NK~D~~~~ 249 (607)
+.|+++|+||+|+...
T Consensus 218 ~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 EDKIRVVLNKADMVET 233 (550)
T ss_dssp GGGEEEEEECGGGSCH
T ss_pred CCCEEEEEECCCccCH
Confidence 6799999999999864
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.4e-14 Score=146.95 Aligned_cols=150 Identities=16% Similarity=0.170 Sum_probs=92.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCceeee--------------------eEEE----------
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDHVTRD--------------------IREG---------- 163 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~~T~~--------------------~~~~---------- 163 (607)
...|+++|++|+|||||+|.|++ .+.+++...++ +|.. +...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~--~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS--SPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------CTTTTCTTEEEEEECC-----CH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC--cCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 46899999999999999999973 44555555444 2210 0000
Q ss_pred ---------EeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCC
Q 007334 164 ---------LAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQ 234 (607)
Q Consensus 164 ---------~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~ 234 (607)
...+.+..+.||||||+... .. .....+|++++|+|++.+..... +.... . +
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~----------~~---~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~--~--~ 194 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQS----------ET---EVARMVDCFISLQIAGGGDDLQG--IKKGL--M--E 194 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTH----------HH---HHHTTCSEEEEEECC------CC--CCHHH--H--H
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccch----------HH---HHHHhCCEEEEEEeCCccHHHHH--HHHhh--h--c
Confidence 00145789999999998721 11 13589999999999976532111 10111 1 3
Q ss_pred CcEEEEecCCCcccCCcCcHHHHHHHHH----hcC------CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 235 IKPIVAMNKCESLHNGTGSLAGAAAESL----MLG------FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 235 ~p~ilV~NK~D~~~~~~~~~~~~~~~~~----~~~------~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.|.++|+||+|+..... .......+. .++ ..+++++||++|.|+++|++.|.+.+.
T Consensus 195 ~p~ivv~NK~Dl~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 195 VADLIVINKDDGDNHTN--VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HCSEEEECCCCTTCHHH--HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ccCEEEEECCCCCChHH--HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 58899999999875311 111111111 122 235689999999999999999987664
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-14 Score=135.66 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=97.4
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhcc-----ceeeeccCCCCceeeee--------EEEEe------------------e
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRR-----REALVYNTPDDHVTRDI--------REGLA------------------K 166 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~-----~~~~v~~~~~~~~T~~~--------~~~~~------------------~ 166 (607)
...++|+|+|++|||||||+|+|++. +.+.+...++ ++.|. ....+ .
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVV--SKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKK 105 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCC--CHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCC--CchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHh
Confidence 34689999999999999999999875 2344444443 22110 00111 1
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCc
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCES 246 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~ 246 (607)
..+..+.+|||+|+.. .|. . +-..++.+++|+|++.+.... ..+.... +.|.++|+||+|+
T Consensus 106 ~~~~d~iiidt~G~~~-~~~------~------~~~~~~~~i~vvd~~~~~~~~----~~~~~~~--~~~~iiv~NK~Dl 166 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLI-CPV------D------FDLGENYRVVMVSVTEGDDVV----EKHPEIF--RVADLIVINKVAL 166 (221)
T ss_dssp GTTCSEEEEEEEEBSS-GGG------G------CCCSCSEEEEEEEGGGCTTHH----HHCHHHH--HTCSEEEEECGGG
T ss_pred cCCCCEEEEeCCCCCC-CCc------h------hccccCcEEEEEeCCCcchhh----hhhhhhh--hcCCEEEEecccC
Confidence 2345789999999631 111 0 012467899999998764322 1222222 5789999999998
Q ss_pred ccCCcCcHHHHHHHHHhcC-CCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 247 LHNGTGSLAGAAAESLMLG-FGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~-~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
..............+...+ ..+++++||++|.|++++++.|.+.+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 167 AEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred CcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 7532122333333343333 2367999999999999999999876643
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-14 Score=159.23 Aligned_cols=105 Identities=19% Similarity=0.296 Sum_probs=83.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCce-----------eecCC------CCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRV-----------LVGPE------AGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~-----------~~~~~------~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
.+|+|+|+.++|||||..+|+..... .+.++ -|+|.......+.|++..++|+||||+.++.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 46899999999999999999732111 11121 1777777777788999999999999998873
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
..+.++++-+|++|+|+|+.++ .+...++|.|+++||+|....
T Consensus 82 ---------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 82 ---------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp ---------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred ---------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence 3456788899999999999987 445679999999999998654
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=142.68 Aligned_cols=89 Identities=31% Similarity=0.343 Sum_probs=64.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---------------------CCeeEEEecCCC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---------------------GDLRFKVLDSAG 179 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---------------------~~~~~~liDTpG 179 (607)
++|+|||.||||||||+|+|++.. ..+.+.|+ +|.+...+.... .+..+.+|||||
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~--~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPF--ATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCG--GGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCC--ceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 479999999999999999999875 34556666 676666555443 245799999999
Q ss_pred CccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
+......+.. .....+.+++.+|++++|+|+++
T Consensus 79 l~~~a~~~~~---lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 79 LVKGAHKGEG---LGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCCSSSC---TTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccccch---HHHHHHHHHHhCCEEEEEEECCC
Confidence 9854332211 11234567899999999999986
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.2e-14 Score=135.03 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=91.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC-----CceeecCCCCceeee--------EEEEE------------------EEcCe
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE-----DRVLVGPEAGLTRDS--------VRVHF------------------EYQGR 372 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~-----~~~~~~~~~gtT~~~--------~~~~~------------------~~~~~ 372 (607)
..+|+++|.+|||||||+|+|++. ....+...++++.|. ....+ ...+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 468999999999999999999864 123334444433221 00011 11245
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh------hHHhcCCcEEEEEeCccCCCCcCchHHH
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------RAVEEGRGLVVIVNKMDLLSGRQNSALY 446 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 446 (607)
.+.+|||||..... ..+ -..++.+++|+|++.+ .....++|.++|+||+|+.+.... ..
T Consensus 110 d~iiidt~G~~~~~-----~~~--------~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~--~~ 174 (221)
T 2wsm_A 110 DLLLIENVGNLICP-----VDF--------DLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGA--DV 174 (221)
T ss_dssp SEEEEEEEEBSSGG-----GGC--------CCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTC--CH
T ss_pred CEEEEeCCCCCCCC-----chh--------ccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhh--HH
Confidence 78899999952211 000 0146889999999875 112246899999999998642100 11
Q ss_pred HHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+.+.+ .+.+. ....+++++||++|.|++++++.+.+.+..
T Consensus 175 ~~~~~----~~~~~---~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 175 EKMKA----DAKLI---NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHH----HHHHH---CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred HHHHH----HHHHh---CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 22211 12211 124689999999999999999999876543
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=134.89 Aligned_cols=167 Identities=16% Similarity=0.066 Sum_probs=102.4
Q ss_pred CCEEEEecCCCCchhHHHHHhh-----ccceeeeccCCCCcee--------------eeeEEEEe---------------
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI-----RRREALVYNTPDDHVT--------------RDIREGLA--------------- 165 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~-----~~~~~~v~~~~~~~~T--------------~~~~~~~~--------------- 165 (607)
.+.++++|.+|||||||++.|. +.+..++...++...+ ++......
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4689999999999999999998 7777776655431111 00000000
Q ss_pred ----------e-eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHH-HH----HHHH
Q 007334 166 ----------K-LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VG----KWLR 229 (607)
Q Consensus 166 ----------~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~----~~l~ 229 (607)
. ..+..+.||||||+....... ........++.. +++++|+|++......+.. .. ....
T Consensus 94 ~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~----~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~ 168 (262)
T 1yrb_A 94 KFNEYLNKILRLEKENDYVLIDTPGQMETFLFH----EFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL 168 (262)
T ss_dssp THHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS----HHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh----hhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc
Confidence 0 012479999999997321100 111222344566 8999999998776666532 11 1122
Q ss_pred hhCCCCcEEEEecCCCcccCCcCc-HHHH-------HHH------------------HHhcCCC-CcEEeecCCCCChHH
Q 007334 230 KHAPQIKPIVAMNKCESLHNGTGS-LAGA-------AAE------------------SLMLGFG-DPIAISAETGLGMTE 282 (607)
Q Consensus 230 ~~~~~~p~ilV~NK~D~~~~~~~~-~~~~-------~~~------------------~~~~~~~-~~i~iSA~~g~gi~e 282 (607)
.. +.|+++|+||+|+....... .... ... +...+.. +++++||++|+|+++
T Consensus 169 ~~--~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~ 246 (262)
T 1yrb_A 169 RL--GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFED 246 (262)
T ss_dssp HH--TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred cc--CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHH
Confidence 22 68999999999987542110 0000 000 1223332 789999999999999
Q ss_pred HHHHhccchHH
Q 007334 283 LYEALRPSVED 293 (607)
Q Consensus 283 L~~~i~~~l~~ 293 (607)
|+++|.+.++.
T Consensus 247 l~~~i~~~~~~ 257 (262)
T 1yrb_A 247 LETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999877653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=158.09 Aligned_cols=104 Identities=24% Similarity=0.331 Sum_probs=77.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeec---------------CCCCceeeeEEEEEEEc----------------Ce
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVG---------------PEAGLTRDSVRVHFEYQ----------------GR 372 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~---------------~~~gtT~~~~~~~~~~~----------------~~ 372 (607)
..+|+|+|++|+|||||+++|++....+.. ...|+|.......+.|. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 368999999999999999999975322221 13455555444455554 56
Q ss_pred EEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCC
Q 007334 373 TVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLL 437 (607)
Q Consensus 373 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~ 437 (607)
.+.||||||+.++. ..+..+++.+|++|+|+|++++ .....++|+|+|+||+|+.
T Consensus 99 ~i~liDTPG~~df~----------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVDFS----------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCSSC----------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred eEEEEECcCchhhH----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 88999999987653 2345778899999999999986 2345689999999999986
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=147.98 Aligned_cols=119 Identities=18% Similarity=0.111 Sum_probs=87.4
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhcccee-----eec------cCCC----CceeeeeEEEEeeeC-------CeeEEEe
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREA-----LVY------NTPD----DHVTRDIREGLAKLG-------DLRFKVL 175 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~-----~v~------~~~~----~~~T~~~~~~~~~~~-------~~~~~li 175 (607)
+.+.+|+|||+.++|||||..+|+-.... .+. |... .+.|.......+.|. ++.++||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 44679999999999999999999733211 011 1000 112332333333342 5789999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
||||+. +|...+...++-+|++|+|+|+.+|+..+...+.+.+.+. ++|.|+|+||+|...
T Consensus 91 DTPGHv----------DF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHV----------DFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCT----------TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH--TCCEEEEEECSSSTT
T ss_pred eCCCCc----------ccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEccccccC
Confidence 999999 5677788899999999999999999999998888888877 899999999999754
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.6e-13 Score=139.57 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=79.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCC-----Cceee-eeEEEEeeeCC--eeEEEecCCCCccccCch----
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPD-----DHVTR-DIREGLAKLGD--LRFKVLDSAGLETEATSG---- 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~-----~~~T~-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~---- 187 (607)
.++|+|||.+|||||||+|+|+|......+ ..+ ..++. +.........+ ..+.+|||+|+.......
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 367999999999999999999987542111 100 00111 11111111122 368999999997432110
Q ss_pred hHHHHHHHHHHHH-----------hhc--cCEEEEEEecC-CCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc
Q 007334 188 SILDRTAGMTANV-----------LAK--TQFAIFMIDVR-SGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 188 ~~~~~~~~~~~~~-----------~~~--ad~vl~VvD~s-~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
.+..........+ +.+ +|++|++++.+ +++...+..+++.|. .+.|+|+|+||+|+.......
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~ 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence 1110000111112 223 44677777765 678888765655554 378999999999998643321
Q ss_pred H--HHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccc
Q 007334 254 L--AGAAAESLMLGFGDPIAISAETGLGMTELYEALRPS 290 (607)
Q Consensus 254 ~--~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~ 290 (607)
. ......+...+. +++++||.++.++++++..+.+.
T Consensus 187 ~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 187 QFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHTC-CCCCCC-----------------
T ss_pred HHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhh
Confidence 1 223344455566 78999999999998876665543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=133.71 Aligned_cols=168 Identities=16% Similarity=0.195 Sum_probs=82.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCC------CCceeeeeEEEEeeeC--CeeEEEecCCCCccccC----ch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTP------DDHVTRDIREGLAKLG--DLRFKVLDSAGLETEAT----SG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~------~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~----~~ 187 (607)
.++|+|||.+|||||||+|+|++......+..+ ..++..+......... ...+.+|||+|+..... -.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 468999999999999999999875321111111 0001111111111112 35789999999942210 01
Q ss_pred hHHHHHHHHHHHHhhc-------------cCEEEEEEecCC-CCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc
Q 007334 188 SILDRTAGMTANVLAK-------------TQFAIFMIDVRS-GLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS 253 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~-------------ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~ 253 (607)
.+..........++.. +++++++++.+. ++...+.++ ++....+.|+++|+||+|+...++..
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~~e~~ 174 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTLKERE 174 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCHHHHH
Confidence 1111111111123322 345677776544 477776444 44443467999999999998643211
Q ss_pred --HHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 254 --LAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 254 --~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.+.....+...+. +++++||++| |++++++.+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 175 RLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhh
Confidence 1233445566676 7899999999 99999998876654
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-12 Score=138.60 Aligned_cols=118 Identities=20% Similarity=0.295 Sum_probs=77.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCce--eecCCCCceeeeEEEE----------------------------------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRV--LVGPEAGLTRDSVRVH---------------------------------- 366 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~--~~~~~~gtT~~~~~~~---------------------------------- 366 (607)
..++|+|+|.+|||||||+|+|++.... .+++.|+|++......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3578999999999999999999998654 5777887765321110
Q ss_pred --EEEcC---eEEEEEecCCCcccccccCcchh-HHHHHHHHHhhccEEEEEeccchh-----------hHHhcCCcEEE
Q 007334 367 --FEYQG---RTVYLVDTAGWLQREKEKGPASL-SVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEGRGLVV 429 (607)
Q Consensus 367 --~~~~~---~~~~liDTpG~~~~~~~~~~~~~-~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~~p~iv 429 (607)
+.+.+ ..+.||||||+.+.........+ ....+..++..+|++|+|+|++.. .....+.|+++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvil 223 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRV 223 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEE
Confidence 00000 36889999998753111101111 113345677899999999999762 11123579999
Q ss_pred EEeCccCCCCc
Q 007334 430 IVNKMDLLSGR 440 (607)
Q Consensus 430 v~NK~Dl~~~~ 440 (607)
|+||+|+....
T Consensus 224 VlNK~Dl~~~~ 234 (550)
T 2qpt_A 224 VLNKADMVETQ 234 (550)
T ss_dssp EEECGGGSCHH
T ss_pred EEECCCccCHH
Confidence 99999998653
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.3e-13 Score=152.97 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=84.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCC-------------CceeeeeEEEEeeeC----------------Ce
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPD-------------DHVTRDIREGLAKLG----------------DL 170 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~-------------~~~T~~~~~~~~~~~----------------~~ 170 (607)
.++|+|+|++|||||||+|+|+.....+....++ ...|.......+.+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 5789999999999999999999764322221111 002322222223332 67
Q ss_pred eEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 171 RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 171 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
.++||||||+. ++...+..+++.+|++|+|+|++++.+.++..+...+... +.|+++|+||+|+..
T Consensus 99 ~i~liDTPG~~----------df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~--~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 99 LINLIDSPGHV----------DFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE--RIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEECCCCCC----------SSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT--TCEEEEEEECHHHHH
T ss_pred eEEEEECcCch----------hhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCeEEEEECCCcch
Confidence 89999999998 3445567788999999999999999998887665555544 789999999999874
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-13 Score=140.36 Aligned_cols=154 Identities=21% Similarity=0.282 Sum_probs=91.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCc-----------------------------------eee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDH-----------------------------------VTR 158 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~-----------------------------------~T~ 158 (607)
...|+|+|++|||||||+|.|++ .+..+....+... +|+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr 134 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAA 134 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHH
Confidence 35799999999999999999983 4444444333200 000
Q ss_pred eeEEE--EeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc
Q 007334 159 DIREG--LAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK 236 (607)
Q Consensus 159 ~~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p 236 (607)
+.... .....+..+.|+||||+.... . .....+|++++|+|++.+.... .+...+. ..+
T Consensus 135 ~~~e~~~~~~~~~~~~iliDT~Gi~~~~--------~-----~v~~~~d~vl~v~d~~~~~~~~--~i~~~i~----~~~ 195 (337)
T 2qm8_A 135 KTRETMLLCEAAGFDVILVETVGVGQSE--------T-----AVADLTDFFLVLMLPGAGDELQ--GIKKGIF----ELA 195 (337)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSSCH--------H-----HHHTTSSEEEEEECSCC--------CCTTHH----HHC
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCcch--------h-----hHHhhCCEEEEEEcCCCcccHH--HHHHHHh----ccc
Confidence 00000 012357899999999997321 0 1247899999999986542211 1111111 236
Q ss_pred EEEEecCCCcccCCcCcHH--HHHHHHHh-cC------CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 237 PIVAMNKCESLHNGTGSLA--GAAAESLM-LG------FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 237 ~ilV~NK~D~~~~~~~~~~--~~~~~~~~-~~------~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.++|+||+|+......... ........ .. ..+++.+||++|.|+++|++.|.+..+
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6888899997542111100 11111111 11 246799999999999999999987664
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=133.84 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=91.3
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcC-cHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTG-SLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~-~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.+.++|.+++| |+..|..... .+.++|... ..++|+++|+||+|+.+.... ........+...|+ +++.+||.+|
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~-~v~~~Sa~~~ 203 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGY-RVLMVSSHTQ 203 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTC-CEEECBTTTT
T ss_pred HHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence 36789999976 5555543333 345555321 127899999999999864210 02223455667888 7999999999
Q ss_pred CChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc-eeecCCC
Q 007334 278 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR-VLVGPEA 356 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~-~~~~~~~ 356 (607)
.|+++|...+. .-.++++|++|||||||+|.|+|... ..++...
T Consensus 204 ~gl~~L~~~~~-----------------------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 204 DGLKPLEEALT-----------------------------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp BTHHHHHHHHT-----------------------------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred cCHHHHHHhcC-----------------------------------CCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 99998876431 12589999999999999999998754 3333322
Q ss_pred ---C----ceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 357 ---G----LTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 357 ---g----tT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
| +|+...... + .....++||||+.++
T Consensus 249 ~~~G~g~~tt~~~~i~~--v-~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 249 NVSGLGQHTTTAARLYH--F-PHGGDVIDSPGVREF 281 (358)
T ss_dssp ----------CCCEEEE--C-TTSCEEEECHHHHTC
T ss_pred ccCCCCccceEEEEEEE--E-CCCCEecCcccHHHh
Confidence 2 232222111 1 112357899986543
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.6e-12 Score=142.28 Aligned_cols=105 Identities=24% Similarity=0.269 Sum_probs=76.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCce-----------------eecCCCCceeeeEEEEEEEc-------CeEEEEEecC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRV-----------------LVGPEAGLTRDSVRVHFEYQ-------GRTVYLVDTA 380 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~-----------------~~~~~~gtT~~~~~~~~~~~-------~~~~~liDTp 380 (607)
.+|+|+|+.++|||||..+|+..... .....-|+|.......+.|. +..++|+|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 47999999999999999999732111 11223467776666667674 4689999999
Q ss_pred CCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCC
Q 007334 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 381 G~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~ 439 (607)
|+.++. ..+.++++-+|++|+|+|+.++ .+...++|.|+++||+|....
T Consensus 94 GHvDF~----------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 94 GHVDFT----------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp SCTTCH----------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred CCcccH----------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCc
Confidence 998873 3455788889999999999987 455679999999999998643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=131.70 Aligned_cols=159 Identities=19% Similarity=0.234 Sum_probs=71.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCC--------CCceeeeEEEEEEEcC--eEEEEEecCCCcccccc-cCc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE--------AGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKE-KGP 391 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~--------~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~-~~~ 391 (607)
..++|+++|++|||||||+|+|.+.+....+.. +++..+.....+...+ ..+.+|||||+...... +..
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 358999999999999999999987533322211 1111111112222222 46789999998432100 001
Q ss_pred chhH---HHHHHHHHhh-------------ccEEEEEeccch-h---------hHHhcCCcEEEEEeCccCCCCcCchHH
Q 007334 392 ASLS---VMQSRKNLMR-------------AHVVALVLDAEE-V---------RAVEEGRGLVVIVNKMDLLSGRQNSAL 445 (607)
Q Consensus 392 ~~~~---~~~~~~~i~~-------------ad~~llViD~~~-~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 445 (607)
..+. ......++.. +++++++++.+. + .......|+++|+||+|+........
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~- 175 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERER- 175 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHH-
Confidence 1111 0111122222 455777766543 1 12234579999999999976422111
Q ss_pred HHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 446 YKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..+.+.+... ..+++++++||++| |++++|..+.+.+
T Consensus 176 ---~~~~~~~~~~-----~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 176 ---LKKRILDEIE-----EHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp ---HHHHHHHHHH-----HTTCCCCCCC----------CHHHHHHH
T ss_pred ---HHHHHHHHHH-----HcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 1111111111 12578999999999 9999998877654
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-12 Score=127.67 Aligned_cols=163 Identities=20% Similarity=0.260 Sum_probs=94.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhh-----cCCceeecCCCCce----------------eeeEEEEE--------------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL-----QEDRVLVGPEAGLT----------------RDSVRVHF-------------- 367 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~-----~~~~~~~~~~~gtT----------------~~~~~~~~-------------- 367 (607)
....++++|++||||||+++.|. |.....+..-++.+ .+......
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 34678899999999999999998 66555555444311 11000000
Q ss_pred -----------E-EcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh------h---------H
Q 007334 368 -----------E-YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------R---------A 420 (607)
Q Consensus 368 -----------~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~------~---------~ 420 (607)
. ..+..+.||||||..+..... .+ ......++.. +++++|+|+... . .
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~---~l-~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFH---EF-GVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS---HH-HHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh---hh-HHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 0 012478999999975431100 00 0112234455 899999998653 0 1
Q ss_pred HhcCCcEEEEEeCccCCCCcCchHHHHHHHH--hcHHHH-----------------HhhCCCCCCCCEEEcccCCCCCHH
Q 007334 421 VEEGRGLVVIVNKMDLLSGRQNSALYKRVKE--AVPQEI-----------------QTVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 421 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~--~~~~~~-----------------~~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
...++|+++|+||+|+.......+..+.+.+ .+...+ .+.+ ....+++++||++|.|++
T Consensus 168 ~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 168 LRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV--LPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH--SCCCCCEECCTTTCTTHH
T ss_pred cccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh--cCcccceEEEecCcccHH
Confidence 1247899999999998764221111111100 000010 0111 123588999999999999
Q ss_pred HHHHHHHHHHH
Q 007334 482 AVMHQVIDTYQ 492 (607)
Q Consensus 482 ~l~~~i~~~~~ 492 (607)
++++.+.+.+.
T Consensus 246 ~l~~~i~~~~~ 256 (262)
T 1yrb_A 246 DLETLAYEHYC 256 (262)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999987664
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-12 Score=132.33 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=70.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecC-------CCCceeeeEEEEEEEcCe--EEEEEecCCCccccccc-Ccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGP-------EAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEK-GPA 392 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~-------~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~-~~~ 392 (607)
..++|+|+|++|||||||+|.|+|......+. .+.+..+.+...+...+. .+.+|||||+....... ...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 35789999999999999999999875322210 111112222222222332 67899999986541110 000
Q ss_pred hh---HHHHHHHH-----------Hh--hccEEEEEeccc-hh---------hHHhcCCcEEEEEeCccCCCCcCchHHH
Q 007334 393 SL---SVMQSRKN-----------LM--RAHVVALVLDAE-EV---------RAVEEGRGLVVIVNKMDLLSGRQNSALY 446 (607)
Q Consensus 393 ~~---~~~~~~~~-----------i~--~ad~~llViD~~-~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 446 (607)
.+ .......+ +. .+|++|++++.+ .+ ..+..++|+|+|+||+|+.......
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~--- 186 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQ--- 186 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHH---
Confidence 00 00011111 22 256677777765 22 1223589999999999998643222
Q ss_pred HHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.+.+.+...+.. .+++++++||+++.++.+++..+..
T Consensus 187 -~~k~~i~~~~~~-----~~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 187 -QFKKQIMKEIQE-----HKIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp -HHHHHHHHHHHH-----HTCCCCCCC----------------
T ss_pred -HHHHHHHHHHHH-----cCCeEEeCCCCCCcCHHHHHHHHHh
Confidence 222222222222 2678999999999999887766654
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-12 Score=135.47 Aligned_cols=91 Identities=24% Similarity=0.233 Sum_probs=55.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 385 (607)
.+++|++||.||||||||+|+|++.. ..++++|++|.++..+.+.+.+ ..+.+|||||+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 45799999999999999999999875 4888999999998888777654 25899999998765
Q ss_pred cc-ccCcchhHHHHHHHHHhhccEEEEEeccchh
Q 007334 386 EK-EKGPASLSVMQSRKNLMRAHVVALVLDAEEV 418 (607)
Q Consensus 386 ~~-~~~~~~~~~~~~~~~i~~ad~~llViD~~~~ 418 (607)
.. ..+.. .....+++.+|++++|+|+++.
T Consensus 100 as~~~glg----~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLG----NAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------C----CHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHH----HHHHHHHHhcCeEEEEEecCCC
Confidence 21 11111 1356788999999999999864
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=119.12 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=86.7
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccc-----eeeeccCCCCceeeee--------EEEEee-------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRR-----EALVYNTPDDHVTRDI--------REGLAK------------------- 166 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~-----~~~v~~~~~~~~T~~~--------~~~~~~------------------- 166 (607)
..++|+|+|.+|||||||+++|+... .+.+...++ ++.|. ....+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~--~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 114 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI--AKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDL 114 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT--THHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC--CCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHH
Confidence 46899999999999999999999752 222222222 11110 000000
Q ss_pred -eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCC
Q 007334 167 -LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCE 245 (607)
Q Consensus 167 -~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D 245 (607)
..+..+.++||+|...... .+ -...+.++.|+|+..+...... .... . +.|.++|+||+|
T Consensus 115 ~~~~~d~~~id~~g~i~~~~-------s~------~~~~~~~~~v~~~~~~~~~~~~-~~~~---~--~~~~iiv~NK~D 175 (226)
T 2hf9_A 115 NLDEIDLLFIENVGNLICPA-------DF------DLGTHKRIVVISTTEGDDTIEK-HPGI---M--KTADLIVINKID 175 (226)
T ss_dssp CGGGCSEEEEECCSCSSGGG-------GC------CCSCSEEEEEEEGGGCTTTTTT-CHHH---H--TTCSEEEEECGG
T ss_pred hcCCCCEEEEeCCCCccCcc-------hh------hhccCcEEEEEecCcchhhHhh-hhhH---h--hcCCEEEEeccc
Confidence 0112566777777431100 00 0123556677776443221110 0111 2 468899999999
Q ss_pred cccCCcCcHHHHHHHHHhcC-CCCcEEeecCCCCChHHHHHHhccchH
Q 007334 246 SLHNGTGSLAGAAAESLMLG-FGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~-~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+..............+..++ ..+++++||++|.|++++++.|.+.+.
T Consensus 176 l~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 176 LADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp GHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 87642222333333344332 226799999999999999999987654
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=117.78 Aligned_cols=148 Identities=16% Similarity=0.199 Sum_probs=83.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCC-----ceeecCCCCceeee--------EEEEEEE--------------------c
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQED-----RVLVGPEAGLTRDS--------VRVHFEY--------------------Q 370 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~-----~~~~~~~~gtT~~~--------~~~~~~~--------------------~ 370 (607)
..+|+++|.+|||||||+++|+... ...+...++++.|. ....+.. .
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 117 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD 117 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence 5789999999999999999998642 11222222222110 0011110 0
Q ss_pred CeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh------hHHhcCCcEEEEEeCccCCCCcCchH
Q 007334 371 GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV------RAVEEGRGLVVIVNKMDLLSGRQNSA 444 (607)
Q Consensus 371 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~------~~~~~~~p~ivv~NK~Dl~~~~~~~~ 444 (607)
+..+.++||+|..... ..+. ...+..+.|+|+... .....++|.++|+||+|+.+....
T Consensus 118 ~~d~~~id~~g~i~~~-----~s~~--------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~-- 182 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP-----ADFD--------LGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGA-- 182 (226)
T ss_dssp GCSEEEEECCSCSSGG-----GGCC--------CSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHTC--
T ss_pred CCCEEEEeCCCCccCc-----chhh--------hccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhHH--
Confidence 1156677777742210 0000 124556677776442 111235788999999998643110
Q ss_pred HHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
..+.+.+ .+... ..+.+++++||++|.|++++|+.+.+.+..
T Consensus 183 ~~~~~~~----~~~~~---~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 183 DIKKMEN----DAKRI---NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp CHHHHHH----HHHHH---CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHh---CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 1111111 11111 125689999999999999999999876654
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.8e-13 Score=138.40 Aligned_cols=148 Identities=17% Similarity=0.162 Sum_probs=92.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc-----ceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR-----REALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~-----~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
.+|+++|.||||||||+|+|++. ....++..|+ +|++.....+ +..+.++||||+........... .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~---~ 234 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVD---A 234 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSC---T
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHh---H
Confidence 47999999999999999999987 4566788888 8888765432 23489999999985432111110 1
Q ss_pred HHHHHh---hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEe
Q 007334 196 MTANVL---AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAI 272 (607)
Q Consensus 196 ~~~~~~---~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~i 272 (607)
..+..+ ...|.+++++|............++++... +.|+++|+||+|........... ......+|. ...+.
T Consensus 235 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~--~~~~~~v~~k~d~~~~~~~~~~~-~~~~~~~g~-~l~p~ 310 (369)
T 3ec1_A 235 RDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGG--RRSFVCYMANELTVHRTKLEKAD-SLYANQLGE-LLSPP 310 (369)
T ss_dssp TTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESS--SEEEEEEECTTSCEEEEEGGGHH-HHHHHHBTT-TBCSS
T ss_pred HHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCC--CceEEEEecCCcccccccHHHHH-HHHHHhcCC-ccCCC
Confidence 122233 678999999998432111111112333333 67999999999988654322221 122233443 45566
Q ss_pred ecCCCCCh
Q 007334 273 SAETGLGM 280 (607)
Q Consensus 273 SA~~g~gi 280 (607)
++....++
T Consensus 311 ~~~~~~~~ 318 (369)
T 3ec1_A 311 SKRYAAEF 318 (369)
T ss_dssp CGGGTTTC
T ss_pred Cchhhhhc
Confidence 66554444
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.6e-13 Score=138.74 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=75.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccc------eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRR------EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTA 194 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~------~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~ 194 (607)
.+|+++|.||||||||+|+|++.. ...++..|+ +|++.....+. ..+.++||||+............
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~---~~~~liDtPG~~~~~~~~~~l~~-- 233 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPG--TTLDLIDIPLD---EESSLYDTPGIINHHQMAHYVGK-- 233 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESS---SSCEEEECCCBCCTTSGGGGSCH--
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCC--eecceEEEEec---CCeEEEeCCCcCcHHHHHHHhhH--
Confidence 579999999999999999999863 445677887 88887654432 23899999999754321111111
Q ss_pred HHHHHH--hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCC
Q 007334 195 GMTANV--LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 195 ~~~~~~--~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~ 250 (607)
...... ....+.+++++|............++++... +.|+++|+||+|.....
T Consensus 234 ~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~--~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 234 QSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGG--RRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp HHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESS--SEEEEEEECTTSCEEEE
T ss_pred HHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCC--CceEEEEecCccccccc
Confidence 111111 3567889999988432221221122334333 67999999999998753
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.2e-11 Score=124.64 Aligned_cols=90 Identities=27% Similarity=0.285 Sum_probs=54.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-----------------eeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-----------------LRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~ 182 (607)
..+|+|||.||||||||+|+|++... .+++.|+ +|.+...+.+.+.+ ..+.+|||||+..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~--tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPF--CTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC----------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCc--cccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 46799999999999999999999765 5677777 88888877776644 2499999999984
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
....+. ......+.+++.+|++++|+|+++
T Consensus 99 ~as~~~---glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAHNGQ---GLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccchhh---HHHHHHHHHHHhcCeEEEEEecCC
Confidence 332111 112245678899999999999975
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=9e-11 Score=120.18 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=80.0
Q ss_pred eEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch----------h-----------hH
Q 007334 362 SVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE----------V-----------RA 420 (607)
Q Consensus 362 ~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~----------~-----------~~ 420 (607)
.....+.+++..+.+|||+|+.+.+.. +..++++++++|+|+|.++ . ..
T Consensus 157 i~~~~~~~~~v~l~iwDtgGQe~~R~~----------w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i 226 (327)
T 3ohm_A 157 IIEYPFDLQSVIFRMVDVGGQRSERRK----------WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI 226 (327)
T ss_dssp EEEEEEEETTEEEEEEEECCSHHHHTT----------GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred EEEEEEEeeceeeEEEEcCCchhHHHH----------HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence 344567778899999999997654321 2357789999999997762 1 11
Q ss_pred ----HhcCCcEEEEEeCccCCCCcC----c----------hHHHHHHHHhcHHHHHhhC-CCCCCCCEEEcccCCCCCHH
Q 007334 421 ----VEEGRGLVVIVNKMDLLSGRQ----N----------SALYKRVKEAVPQEIQTVI-PQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 421 ----~~~~~p~ivv~NK~Dl~~~~~----~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~iSA~~g~gv~ 481 (607)
...+.|+++++||+|+.+..- . ....+...+-+...+.... +....+.++++||+++.||+
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~ 306 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR 306 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence 124789999999999864210 0 0112222222222222211 22345678999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 007334 482 AVMHQVIDTYQKWC 495 (607)
Q Consensus 482 ~l~~~i~~~~~~~~ 495 (607)
.+|..+.+.+.+..
T Consensus 307 ~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 307 FVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999988765433
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-10 Score=120.63 Aligned_cols=92 Identities=22% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 385 (607)
+..+|+++|.||||||||+|+|+|...+.++++|++|+++..+.+.+.+ ..+.+|||||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 4578999999999999999999998755899999999999998888876 46889999998765
Q ss_pred ccccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 386 EKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 386 ~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
... .+.+. .....+++.+|++++|+|+.+
T Consensus 99 ~s~--~e~L~-~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 AST--GVGLG-NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCS--SSSSC-HHHHHHHTTCSEEEEEEECCC
T ss_pred CcH--HHHHH-HHHHHHHHHHHHHHHHHhccc
Confidence 211 11121 234567889999999999876
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-10 Score=124.24 Aligned_cols=158 Identities=16% Similarity=0.235 Sum_probs=96.2
Q ss_pred CCEEEEecCCCCchhHHHHHhh------ccceeeeccCCCCcee------------eeeEEE---------------Eee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDDHVT------------RDIREG---------------LAK 166 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~T------------~~~~~~---------------~~~ 166 (607)
...|+|+|.+||||||++++|. |.+..++...+..... .++... ...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999 7776666543221110 011000 001
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcE-EEEecCCC
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVAMNKCE 245 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~-ilV~NK~D 245 (607)
+.+..+.||||||..... .....+.. .... +..+|.+++|+|++.+.. ...+.+.+.+. .|+ ++|+||+|
T Consensus 181 ~~~~DvvIIDTpG~~~~~--~~l~~el~-~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~---~~i~gvVlNK~D 251 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQE--DSLFEEML-QVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK---VDVASVIVTKLD 251 (504)
T ss_dssp HTTCCEEEEEECCCCTTC--HHHHHHHH-HHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH---HCCCCEEEECTT
T ss_pred HCCCcEEEEeCCCCcccc--hhHHHHHH-HHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh---cCceEEEEeCCc
Confidence 256789999999987421 11222221 1122 237899999999988754 33344444432 574 89999999
Q ss_pred cccCCcCcHHHHHHHHHhcC-----------------CCCcEEeecCCCCC-hHHHHHHhccc
Q 007334 246 SLHNGTGSLAGAAAESLMLG-----------------FGDPIAISAETGLG-MTELYEALRPS 290 (607)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~iSA~~g~g-i~eL~~~i~~~ 290 (607)
....... ........+ +.+.+++|+.+|.| +++|++++.+.
T Consensus 252 ~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 8753211 111112222 22335689999999 99999998765
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-11 Score=131.14 Aligned_cols=183 Identities=20% Similarity=0.196 Sum_probs=103.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhh------cCCceeecCCC---Cc--------e---eeeEEE---------------EE
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL------QEDRVLVGPEA---GL--------T---RDSVRV---------------HF 367 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~------~~~~~~~~~~~---gt--------T---~~~~~~---------------~~ 367 (607)
.+..|+++|.+||||||++++|. |.....++.-+ +. + .+.+.. .+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998 66554443311 10 0 111100 00
Q ss_pred EEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCCcE-EEEEeCccCCCC
Q 007334 368 EYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRGL-VVIVNKMDLLSG 439 (607)
Q Consensus 368 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p~-ivv~NK~Dl~~~ 439 (607)
.+.+..+.||||||....... ....+ .....+ ..+|.+++|+|++.+ ..+...+|+ ++|+||+|....
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~-l~~el--~~~~~~-i~pd~vllVvDa~~g~~~~~~a~~~~~~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDS-LFEEM--LQVANA-IQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHH-HHHHH--HHHHHH-HCCSEEEEEEETTCCTTHHHHHHHHHHHHCCCCEEEECTTSCCC
T ss_pred HHCCCcEEEEeCCCCcccchh-HHHHH--HHHHhh-hcCceEEEEEeccccccHHHHHHHHHhhcCceEEEEeCCccccc
Confidence 125678999999997542100 00011 111122 279999999999865 122223675 899999998754
Q ss_pred cCchHHHHHHHHhcHHHH-----HhhCC-CCCCCCEEEcccCCCCC-HHHHHHHHHHHH----HHHhcCCChHH--HHHH
Q 007334 440 RQNSALYKRVKEAVPQEI-----QTVIP-QVTGIPVVFTSALEGRG-RIAVMHQVIDTY----QKWCLRLPTSR--LNRW 506 (607)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~v~iSA~~g~g-v~~l~~~i~~~~----~~~~~~~~~~~--l~~~ 506 (607)
... ... +.+.+...+ .+.+. ...+.|.+++||..|.| +.+|++++.+.. +++..++.+++ ++++
T Consensus 256 ~g~--~l~-~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~~g~~~l~d~ 332 (504)
T 2j37_W 256 GGG--ALS-AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDM 332 (504)
T ss_dssp CTH--HHH-HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCTTSGGGGCCC
T ss_pred hHH--HHH-HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 321 111 111000000 00010 01133567789999999 999999988762 23445666665 6666
Q ss_pred HHHHHH
Q 007334 507 LRKVMG 512 (607)
Q Consensus 507 l~~~~~ 512 (607)
+..+..
T Consensus 333 ~~~l~~ 338 (504)
T 2j37_W 333 YEQFQN 338 (504)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-10 Score=118.53 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=77.8
Q ss_pred eEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch----------h-----------hH
Q 007334 362 SVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE----------V-----------RA 420 (607)
Q Consensus 362 ~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~----------~-----------~~ 420 (607)
.....+.+++..+.||||+|+.+.+ ..+..++++++++|+|+|.++ . ..
T Consensus 151 i~~~~~~~~~v~l~iwDtaGQe~~R----------~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i 220 (340)
T 4fid_A 151 IHEYDFVVKDIPFHLIDVGGQRSER----------KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI 220 (340)
T ss_dssp CEEEEEESSSCEEEEEECCSCHHHH----------HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred eEEEEEEeeeeeeccccCCCccccc----------ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence 3445566788899999999964432 234567889999999999982 1 11
Q ss_pred ----HhcCCcEEEEEeCccCCCCcC-------------chHHHHHHHHhcHHHH------HhhC-CCC-----------C
Q 007334 421 ----VEEGRGLVVIVNKMDLLSGRQ-------------NSALYKRVKEAVPQEI------QTVI-PQV-----------T 465 (607)
Q Consensus 421 ----~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~~~~------~~~~-~~~-----------~ 465 (607)
...+.|+||++||+|+....- ....++...+.+...+ .... +.. .
T Consensus 221 ~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (340)
T 4fid_A 221 MTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE 300 (340)
T ss_dssp HHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred hhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence 124789999999999854210 0001222222222222 1100 111 2
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+.++++||+++.||..+|..+.+.+.+
T Consensus 301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 301 KVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999886543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-09 Score=114.66 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=82.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhcccee---eeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCch----h--
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREA---LVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSG----S-- 188 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~---~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~----~-- 188 (607)
.++++|||.+|+|||||+|.|+|.... .....++ .++..........+ ..+.++||+|+....... .
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~--~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPG--VQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSS--CEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCcc--ceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 356999999999999999999987421 1111222 34432222222222 268999999997432211 0
Q ss_pred --HHHHHHHHHHHHh---------hcc--C-EEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH
Q 007334 189 --ILDRTAGMTANVL---------AKT--Q-FAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL 254 (607)
Q Consensus 189 --~~~~~~~~~~~~~---------~~a--d-~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~ 254 (607)
+...+......+. .++ | +++||+|++++.+..|.+++++|. .+.|+|+|+||+|.+...+...
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHH
Confidence 1111111111111 122 2 577889999999999988888876 3789999999999986432111
Q ss_pred -HHHHH-HHHhcCCCCcEEeec
Q 007334 255 -AGAAA-ESLMLGFGDPIAISA 274 (607)
Q Consensus 255 -~~~~~-~~~~~~~~~~i~iSA 274 (607)
..... .+...|. .++.+|.
T Consensus 197 l~~~I~~~L~~~gi-~I~~is~ 217 (427)
T 2qag_B 197 FKIKITSELVSNGV-QIYQFPT 217 (427)
T ss_dssp HHHHHHHHHBTTBC-CCCCCC-
T ss_pred HHHHHHHHHHHcCC-cEEecCC
Confidence 11111 1333444 6677774
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-10 Score=116.82 Aligned_cols=91 Identities=24% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-----------------eeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-----------------LRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~ 182 (607)
..+|+|||.||||||||||+|++...+.+++.|+ +|.+...+.+.+.+ ..+.+|||||+..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~--tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY--ATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS--CCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCc--eeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4689999999999999999999987656788888 89988888887765 3589999999985
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
....... ........++.+|.+++|+|+.+
T Consensus 98 ~~s~~e~---L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVG---LGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSS---SCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHH---HHHHHHHHHHHHHHHHHHHhccc
Confidence 4432221 11234567889999999999975
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-10 Score=118.38 Aligned_cols=124 Identities=16% Similarity=0.094 Sum_probs=85.2
Q ss_pred eeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCC-------HhH-HHHHHHHHh
Q 007334 159 DIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH-------PLD-LEVGKWLRK 230 (607)
Q Consensus 159 ~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~-------~~~-~~~~~~l~~ 230 (607)
......+.+++..+.+|||+|+. .+...+..++++++++|||+|+++..+ ... .++..|+..
T Consensus 182 Gi~~~~~~~~~~~l~iwDt~GQe----------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~ 251 (353)
T 1cip_A 182 GIVETHFTFKDLHFKMFDVGGQR----------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDS 251 (353)
T ss_dssp SEEEEEEEETTEEEEEEEECCSG----------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHH
T ss_pred ceEEEEEeeCCeeEEEEeCCCch----------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHH
Confidence 34445566788999999999998 445566778999999999999998432 111 233444443
Q ss_pred h-----CCCCcEEEEecCCCcccCC---------------cCcHHHHHHHHH----h-------cCCCCcEEeecCCCCC
Q 007334 231 H-----APQIKPIVAMNKCESLHNG---------------TGSLAGAAAESL----M-------LGFGDPIAISAETGLG 279 (607)
Q Consensus 231 ~-----~~~~p~ilV~NK~D~~~~~---------------~~~~~~~~~~~~----~-------~~~~~~i~iSA~~g~g 279 (607)
. ..+.|+|+|+||+|+.... ....++....+. . .++ .++++||++|.|
T Consensus 252 i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~n 330 (353)
T 1cip_A 252 ICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKN 330 (353)
T ss_dssp HHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHH
T ss_pred HHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchh
Confidence 2 3578999999999986321 122333333332 1 122 568999999999
Q ss_pred hHHHHHHhccchHH
Q 007334 280 MTELYEALRPSVED 293 (607)
Q Consensus 280 i~eL~~~i~~~l~~ 293 (607)
|+++|+++.+.+..
T Consensus 331 V~~vF~~v~~~i~~ 344 (353)
T 1cip_A 331 VQFVFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877643
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=106.99 Aligned_cols=162 Identities=15% Similarity=0.046 Sum_probs=95.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccc----eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRR----EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~----~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
...|+|+|++|||||||+|.|+|-. ..+..... .+|+....... .....+.++|+||+.... . ...++..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~--~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~--~-~~~~~L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV--EVTMERHPYKH-PNIPNVVFWDLPGIGSTN--F-PPDTYLE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------CCCEEEEC-SSCTTEEEEECCCGGGSS--C-CHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe--ecceeEEeccc-cccCCeeehHhhcccchH--H-HHHHHHH
Confidence 3589999999999999999999832 22211111 13332111111 112368999999986321 1 1112211
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC-------CcCcHH---HHHHHH----
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN-------GTGSLA---GAAAES---- 261 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~-------~~~~~~---~~~~~~---- 261 (607)
. ..+...+..++ ++... ...++..++.++... ++|+++|.||.|+.-- +..... ......
T Consensus 143 ~--~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~ 216 (413)
T 1tq4_A 143 K--MKFYEYDFFII-ISATR-FKKNDIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 216 (413)
T ss_dssp H--TTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred H--cCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 1 12445566555 66654 456666788888776 6899999999997620 111111 122222
Q ss_pred -HhcC--CCCcEEeec--CCCCChHHHHHHhccchHH
Q 007334 262 -LMLG--FGDPIAISA--ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 262 -~~~~--~~~~i~iSA--~~g~gi~eL~~~i~~~l~~ 293 (607)
...| ...++.+|+ ..+.|+++|.+.|.+.+++
T Consensus 217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 1222 346799999 6777899999999887765
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.7e-10 Score=112.85 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=87.1
Q ss_pred eeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecC-------CCCCHhH-HHHHHHH
Q 007334 157 TRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVR-------SGLHPLD-LEVGKWL 228 (607)
Q Consensus 157 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s-------~~~~~~~-~~~~~~l 228 (607)
|.......+..++.++.+|||+|++ .+...+..++++++++|+|+|++ +..+... .+...|+
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~ 223 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQR----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALF 223 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSH----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHH
T ss_pred eeeEEEEEEEeeceeeEEEEcCCch----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHH
Confidence 3344555667788999999999998 67777888999999999999887 3222222 2244444
Q ss_pred Hhh-----CCCCcEEEEecCCCcccCC----------------cCcHHHHHHHH----Hh------cCCCCcEEeecCCC
Q 007334 229 RKH-----APQIKPIVAMNKCESLHNG----------------TGSLAGAAAES----LM------LGFGDPIAISAETG 277 (607)
Q Consensus 229 ~~~-----~~~~p~ilV~NK~D~~~~~----------------~~~~~~~~~~~----~~------~~~~~~i~iSA~~g 277 (607)
... ..+.|+++++||+|+...+ ....++....+ .. .++ .++++||+++
T Consensus 224 ~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~ 302 (327)
T 3ohm_A 224 RTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDT 302 (327)
T ss_dssp HHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCH
T ss_pred HHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecC
Confidence 433 2578999999999987532 12233332221 11 122 3578999999
Q ss_pred CChHHHHHHhccchHH
Q 007334 278 LGMTELYEALRPSVED 293 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~ 293 (607)
.||+++|+.+.+.+..
T Consensus 303 ~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 303 ENIRFVFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877643
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-09 Score=112.34 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=79.0
Q ss_pred EEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh---------------------hHH
Q 007334 363 VRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------------------RAV 421 (607)
Q Consensus 363 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~---------------------~~~ 421 (607)
....+.+++..+.+|||+|+.+.+.. ...+++++|++|+|+|.++. ...
T Consensus 184 ~~~~~~~~~~~l~iwDt~GQe~~r~~----------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~ 253 (353)
T 1cip_A 184 VETHFTFKDLHFKMFDVGGQRSERKK----------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSIC 253 (353)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGG----------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEeeCCeeEEEEeCCCchhhhHH----------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHH
Confidence 34567778899999999998655322 22467789999999999982 111
Q ss_pred ----hcCCcEEEEEeCccCCCCcC----c---------hHHHHHHHHhcHHHHHhhCC--CCCCCCEEEcccCCCCCHHH
Q 007334 422 ----EEGRGLVVIVNKMDLLSGRQ----N---------SALYKRVKEAVPQEIQTVIP--QVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 422 ----~~~~p~ivv~NK~Dl~~~~~----~---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~iSA~~g~gv~~ 482 (607)
..+.|+||++||+|+..... . ....+...+.+...+..... ....++++++||++|.||.+
T Consensus 254 ~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 254 NNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred cCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 24789999999999853210 0 00112221111111111111 12467899999999999999
Q ss_pred HHHHHHHHHHHH
Q 007334 483 VMHQVIDTYQKW 494 (607)
Q Consensus 483 l~~~i~~~~~~~ 494 (607)
+|+++.+.+.+.
T Consensus 334 vF~~v~~~i~~~ 345 (353)
T 1cip_A 334 VFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.6e-10 Score=114.54 Aligned_cols=122 Identities=11% Similarity=0.069 Sum_probs=78.8
Q ss_pred eeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC----------CHhHHHHHHHH
Q 007334 159 DIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL----------HPLDLEVGKWL 228 (607)
Q Consensus 159 ~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~----------~~~~~~~~~~l 228 (607)
......+.+++..+.+|||+|+. .+...+..++++++++|||+|+++.. +.. +...|+
T Consensus 190 Gi~~~~~~~~~~~l~i~Dt~Gq~----------~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~--es~~~~ 257 (362)
T 1zcb_A 190 GIHEYDFEIKNVPFKMVDVGGQR----------SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLT--ESLNIF 257 (362)
T ss_dssp SEEEEEEEETTEEEEEEEECC-----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHH--HHHHHH
T ss_pred ceEEEEeeeCCeEEEEEeccchh----------hhhhhHHHHhCCCCEEEEEEECccccccccccccccHHH--HHHHHH
Confidence 33445566788999999999998 55566778899999999999999831 222 233333
Q ss_pred Hhh-----CCCCcEEEEecCCCcccCC----------------cCcHHHHHHHH----Hh-------cCCCCcEEeecCC
Q 007334 229 RKH-----APQIKPIVAMNKCESLHNG----------------TGSLAGAAAES----LM-------LGFGDPIAISAET 276 (607)
Q Consensus 229 ~~~-----~~~~p~ilV~NK~D~~~~~----------------~~~~~~~~~~~----~~-------~~~~~~i~iSA~~ 276 (607)
... ..+.|+|+|+||+|+.... ....++....+ .. .++ .++++||++
T Consensus 258 ~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d 336 (362)
T 1zcb_A 258 ETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAIN 336 (362)
T ss_dssp HHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTC
T ss_pred HHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCC
Confidence 332 3578999999999987421 12233332222 11 122 457899999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|.||+++|+.+.+.+..
T Consensus 337 ~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 337 TENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 99999999999877644
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.1e-09 Score=111.24 Aligned_cols=141 Identities=16% Similarity=0.248 Sum_probs=75.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCce---eecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccc---cC-cchhH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRV---LVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKE---KG-PASLS 395 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~---~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~---~~-~~~~~ 395 (607)
++++|+|++|+|||||+|.|+|.... .....++.++..+...+...+. .+.++|++|+...... +. ...+.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 45999999999999999999986421 1222355565544333332232 6789999998643110 00 00011
Q ss_pred HHHHHHHHh-------------h--cc-EEEEEeccchh---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHH
Q 007334 396 VMQSRKNLM-------------R--AH-VVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVK 450 (607)
Q Consensus 396 ~~~~~~~i~-------------~--ad-~~llViD~~~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 450 (607)
..+...++. . .| ++++|+|+..+ ..+..++|+|+|.||+|.+...+....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~-- 200 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIK-- 200 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHH--
Confidence 111111111 1 23 46677787654 223368899999999998865433222222
Q ss_pred HhcHHHHHhhCCCCCCCCEEEccc
Q 007334 451 EAVPQEIQTVIPQVTGIPVVFTSA 474 (607)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~v~iSA 474 (607)
+...+. ..+++++++|.
T Consensus 201 --I~~~L~-----~~gi~I~~is~ 217 (427)
T 2qag_B 201 --ITSELV-----SNGVQIYQFPT 217 (427)
T ss_dssp --HHHHHB-----TTBCCCCCCC-
T ss_pred --HHHHHH-----HcCCcEEecCC
Confidence 222222 13667777764
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-09 Score=111.59 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=74.4
Q ss_pred EEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch----------h-----------hH--
Q 007334 364 RVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE----------V-----------RA-- 420 (607)
Q Consensus 364 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~----------~-----------~~-- 420 (607)
...+.+++..+.+|||||+...+..+ ..++++++++|+|+|+++ . ..
T Consensus 193 ~~~~~~~~~~l~i~Dt~Gq~~~r~~w----------~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 193 EYDFEIKNVPFKMVDVGGQRSERKRW----------FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp EEEEEETTEEEEEEEECC-------C----------TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred EEEeeeCCeEEEEEeccchhhhhhhH----------HHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 35567788999999999986543211 245678999999999987 2 11
Q ss_pred --HhcCCcEEEEEeCccCCCCc--------------CchHHHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHH
Q 007334 421 --VEEGRGLVVIVNKMDLLSGR--------------QNSALYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 421 --~~~~~p~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~ 482 (607)
...+.|+||++||+|+.... +.....+...+.+...+...... ...+.++++||++|.||++
T Consensus 263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 12478999999999986321 00011122211111111111111 2357899999999999999
Q ss_pred HHHHHHHHHHHHh
Q 007334 483 VMHQVIDTYQKWC 495 (607)
Q Consensus 483 l~~~i~~~~~~~~ 495 (607)
+|..+.+.+.+..
T Consensus 343 vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 343 VFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988765433
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=101.10 Aligned_cols=126 Identities=20% Similarity=0.340 Sum_probs=74.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccC-----CCCceeeeeEEEEeee-C--CeeEEEecCCCCccccCch---hH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNT-----PDDHVTRDIREGLAKL-G--DLRFKVLDSAGLETEATSG---SI 189 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~-----~~~~~T~~~~~~~~~~-~--~~~~~liDTpG~~~~~~~~---~~ 189 (607)
++|+|||.+|+|||||+|.|+|......+.. +...++.....+.+.- . ...+.++|++|+....... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 5799999999999999999998643221110 0000111112222211 1 1368999999997432211 11
Q ss_pred HHHH-----HHHHHHH----------hhccCEEEEEEec-CCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 190 LDRT-----AGMTANV----------LAKTQFAIFMIDV-RSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 190 ~~~~-----~~~~~~~----------~~~ad~vl~VvD~-s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
..++ ....... +..++++++++|. +++..+.+.+++++|.+. .++|+|+||+|....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~---~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV---VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT---SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc---CcEEEEEeccccCCH
Confidence 1111 1111111 2235888999986 488999998888888763 799999999998874
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-09 Score=115.52 Aligned_cols=102 Identities=17% Similarity=0.233 Sum_probs=64.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEee-------eCCeeEEEecCCCCccccC-chhHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK-------LGDLRFKVLDSAGLETEAT-SGSILD 191 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~-------~~~~~~~liDTpG~~~~~~-~~~~~~ 191 (607)
..+|+|+|.||||||||+|+|+|....+ ..++ +|++.+.+... ..+..+.|+||||+..... ......
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~--tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGS--TVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCC--SSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCC--CCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 5689999999999999999999987432 3333 44443333322 2567899999999985332 111111
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHh
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK 230 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~ 230 (607)
..+ ++..+. ++ ++|+|+..+++..+..++.++.+
T Consensus 114 ~~f--ala~ll-ss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 114 WIF--ALAVLL-SS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHH--HHHHHH-CS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHH--HHHHHh-cC--eEEEECCCCccHHHHHHHHHHHH
Confidence 111 122222 33 67888888899988776655544
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-10 Score=122.54 Aligned_cols=181 Identities=21% Similarity=0.237 Sum_probs=97.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC------CceeecC------------------------CCCceeeeEEE----EEEE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE------DRVLVGP------------------------EAGLTRDSVRV----HFEY 369 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~------~~~~~~~------------------------~~gtT~~~~~~----~~~~ 369 (607)
+..|+++|.+||||||+++.|.+. ....+.. ..++++|+... .-.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999753 2222211 11133432110 0001
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCC-c-EEEEEeCccCCCCc
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGR-G-LVVIVNKMDLLSGR 440 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~-p-~ivv~NK~Dl~~~~ 440 (607)
.+..+.|+||||..... ...+..+.....+..+|.+++|+|++.+ ..+.... | ..+|+||+|.....
T Consensus 179 ~~~D~vIIDT~G~~~~~----~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~~i~gvVlnK~D~~~~~ 254 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE----KGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAFKEAVGEIGSIIVTKLDGSAKG 254 (432)
T ss_dssp SSCSEEEEECCCSCSSH----HHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHHHTTSCSCEEEEEECSSSCSTT
T ss_pred hCCCEEEEcCCCCcccc----HHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHHhhcccCCeEEEEeCCCCccch
Confidence 56689999999965321 0111111112222368999999999876 2233446 6 89999999986432
Q ss_pred CchHHHHHHHHhcHHHH-----HhhCCC-CCCCCEEEcccCCCCC-HHHHHHHHHHHHHH----HhcCCChHH--HHHHH
Q 007334 441 QNSALYKRVKEAVPQEI-----QTVIPQ-VTGIPVVFTSALEGRG-RIAVMHQVIDTYQK----WCLRLPTSR--LNRWL 507 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~v~iSA~~g~g-v~~l~~~i~~~~~~----~~~~~~~~~--l~~~l 507 (607)
. .... +...+...+ ++.+.. ..+.|..++||..|.| +..+++.+.+.+.+ ...++.+++ +++++
T Consensus 255 g--~~l~-~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e~~~~~~~k~~~~~~~~~~~~ 331 (432)
T 2v3c_C 255 G--GALS-AVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDEKTEESIDAIMRGKFTLNELM 331 (432)
T ss_dssp H--HHHH-HHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCSSSSTTHHHHCCSCCHHHHHH
T ss_pred H--HHHH-HHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHhhhHHHHHHHHcCCCCHHHHH
Confidence 1 1111 111110000 000000 1233556789999999 88888877654432 122223333 56666
Q ss_pred HHHH
Q 007334 508 RKVM 511 (607)
Q Consensus 508 ~~~~ 511 (607)
..+.
T Consensus 332 ~~l~ 335 (432)
T 2v3c_C 332 TQLE 335 (432)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 5543
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-09 Score=110.39 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=81.7
Q ss_pred EEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC----------CCCHhHHHHHHHHHh
Q 007334 161 REGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS----------GLHPLDLEVGKWLRK 230 (607)
Q Consensus 161 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~----------~~~~~~~~~~~~l~~ 230 (607)
....+.+++..+.+|||+|+. .+...+..+++.++++|+|+|+++ ..+.. ++..|+..
T Consensus 208 ~~~~~~~~~v~l~iwDtaGQe----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~--e~~~~~~~ 275 (402)
T 1azs_C 208 FETKFQVDKVNFHMFDVGGQR----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQ--EALNLFKS 275 (402)
T ss_dssp EEEEEEETTEEEEEEEECCSG----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHH--HHHHHHHH
T ss_pred EEEEeecCCccceecccchhh----------hhhhhhHhhccCCCEEEEEEECcccccccccccccchHH--HHHHHHHH
Confidence 334556678999999999998 455667788999999999999997 33332 24444443
Q ss_pred h-----CCCCcEEEEecCCCcccCCc---C---------------------------cHHHHHHH----HHhc-------
Q 007334 231 H-----APQIKPIVAMNKCESLHNGT---G---------------------------SLAGAAAE----SLML------- 264 (607)
Q Consensus 231 ~-----~~~~p~ilV~NK~D~~~~~~---~---------------------------~~~~~~~~----~~~~------- 264 (607)
. ..+.|+|+|+||+|+...+. . ..+..... +...
T Consensus 276 i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~ 355 (402)
T 1azs_C 276 IWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDG 355 (402)
T ss_dssp HHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhcccccc
Confidence 2 35789999999999854221 0 01111111 1111
Q ss_pred --CCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 --GFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 --~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++ .++++||+++.||+++|+.+.+.+..
T Consensus 356 ~~~~-~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 356 RHYC-YPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp SSCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred Cccc-EEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 11 34689999999999999998876644
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-08 Score=109.26 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=69.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhc------cceeeeccCCC----------------------CceeeeeE----EEEeee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR------RREALVYNTPD----------------------DHVTRDIR----EGLAKL 167 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~----------------------~~~T~~~~----~~~~~~ 167 (607)
...|+++|.+||||||+++.|.. .+...+...+. ..++++.. ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999986 23433332211 00222210 000012
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCC-c-EEEEecCCC
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI-K-PIVAMNKCE 245 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~-p-~ilV~NK~D 245 (607)
.+..+.|+||||..... ....... . ....+..+|.+++|+|+..+.. .....+.+.. .. | ..+|+||+|
T Consensus 179 ~~~D~vIIDT~G~~~~~--~~l~~~l-~-~i~~~~~~d~vllVvda~~g~~--~~~~~~~~~~---~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE--KGLLEEM-K-QIKEITNPDEIILVIDGTIGQQ--AGIQAKAFKE---AVGEIGSIIVTKLD 249 (432)
T ss_dssp SSCSEEEEECCCSCSSH--HHHHHHH-H-HTTSSSCCSEEEEEEEGGGGGG--HHHHHHHHHT---TSCSCEEEEEECSS
T ss_pred hCCCEEEEcCCCCcccc--HHHHHHH-H-HHHHHhcCcceeEEeeccccHH--HHHHHHHHhh---cccCCeEEEEeCCC
Confidence 56789999999987321 1111111 1 1122336899999999987632 1222233322 35 5 889999999
Q ss_pred ccc
Q 007334 246 SLH 248 (607)
Q Consensus 246 ~~~ 248 (607)
...
T Consensus 250 ~~~ 252 (432)
T 2v3c_C 250 GSA 252 (432)
T ss_dssp SCS
T ss_pred Ccc
Confidence 864
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-09 Score=104.57 Aligned_cols=59 Identities=34% Similarity=0.473 Sum_probs=39.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~ 183 (607)
..+|+++|+||||||||+|+|++...+.+++.|+ +|++.... .. +..+.+|||||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g--~T~~~~~~--~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG--ITTSQQWV--KV-GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCE--EE-TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCC--eeeeeEEE--Ee-CCCEEEEECcCcCCC
Confidence 4689999999999999999999988778888888 88877532 22 457999999999843
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.9e-09 Score=108.81 Aligned_cols=113 Identities=9% Similarity=0.050 Sum_probs=74.4
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecC----------CCCCHhHHHHHHHHHhh-----CC
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVR----------SGLHPLDLEVGKWLRKH-----AP 233 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s----------~~~~~~~~~~~~~l~~~-----~~ 233 (607)
...+.+|||+|++ .+...+..+++.++++|+|+|++ +..+.. ++..|+... ..
T Consensus 182 ~v~l~iwDtaGQe----------~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~--~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 182 GEVYRLFDVGGQR----------NERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMM--ETKELFDWVLKQPCFE 249 (354)
T ss_dssp --EEEEEEECCST----------TGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHH--HHHHHHHHHHTCGGGS
T ss_pred ceeeEEEECCCch----------hhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHH--HHHHHHHHHHhccccC
Confidence 4789999999998 45556677899999999999998 222222 234444332 35
Q ss_pred CCcEEEEecCCCcccCCc--C-------------------cHHHHHHHHHh----c----------CCC-CcEEeecCCC
Q 007334 234 QIKPIVAMNKCESLHNGT--G-------------------SLAGAAAESLM----L----------GFG-DPIAISAETG 277 (607)
Q Consensus 234 ~~p~ilV~NK~D~~~~~~--~-------------------~~~~~~~~~~~----~----------~~~-~~i~iSA~~g 277 (607)
+.|+++|+||+|+...+. . ..++....+.. + +.. .++++||++|
T Consensus 250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~ 329 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ 329 (354)
T ss_dssp SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence 789999999999864321 0 01222222111 1 111 2479999999
Q ss_pred CChHHHHHHhccchHH
Q 007334 278 LGMTELYEALRPSVED 293 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~ 293 (607)
.||+++|+.+.+.+..
T Consensus 330 ~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 330 KLVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999999876643
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-08 Score=105.94 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=75.6
Q ss_pred EEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch----------h-----------hHH--
Q 007334 365 VHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE----------V-----------RAV-- 421 (607)
Q Consensus 365 ~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~----------~-----------~~~-- 421 (607)
..+.+++..+.||||+|+.+.+.. +..++++++++|+|+|.++ . ...
T Consensus 210 ~~~~~~~v~l~iwDtaGQe~~r~~----------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQRDERRK----------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEEEETTEEEEEEEECCSGGGGGG----------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred EEeecCCccceecccchhhhhhhh----------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 456778899999999998655321 2356788999999999998 3 111
Q ss_pred --hcCCcEEEEEeCccCCCCcC---c---h----------------------HHHHHHHHhcHHHHHhhC----CCCCCC
Q 007334 422 --EEGRGLVVIVNKMDLLSGRQ---N---S----------------------ALYKRVKEAVPQEIQTVI----PQVTGI 467 (607)
Q Consensus 422 --~~~~p~ivv~NK~Dl~~~~~---~---~----------------------~~~~~~~~~~~~~~~~~~----~~~~~~ 467 (607)
..+.|+|||+||+||..... . . ...+....-+...+.... .....+
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 14689999999999843210 0 0 011111111111111110 111245
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.++++||+++.||+++|..+.+.+.+
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 67899999999999999998876543
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-08 Score=104.59 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=85.5
Q ss_pred eeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC-------CCCHhH-HHHHHHH
Q 007334 157 TRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS-------GLHPLD-LEVGKWL 228 (607)
Q Consensus 157 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~-------~~~~~~-~~~~~~l 228 (607)
|.......+..++..+.+|||+|++ .+...+..+++.++++|+|+|+++ ..+... .+...|+
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~ 217 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQR----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVF 217 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCH----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCcc----------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHH
Confidence 4445556667788999999999998 777888999999999999999982 111111 1233443
Q ss_pred Hhh-----CCCCcEEEEecCCCcccCCc---------------CcHHHHHHHHH-hc-----------------------
Q 007334 229 RKH-----APQIKPIVAMNKCESLHNGT---------------GSLAGAAAESL-ML----------------------- 264 (607)
Q Consensus 229 ~~~-----~~~~p~ilV~NK~D~~~~~~---------------~~~~~~~~~~~-~~----------------------- 264 (607)
... ..+.|+++++||+|+...+. ...++....+. .+
T Consensus 218 ~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~ 297 (340)
T 4fid_A 218 KDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGA 297 (340)
T ss_dssp HHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC------------
T ss_pred HHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccc
Confidence 332 35789999999999865210 11222222111 11
Q ss_pred ---CCCCcEEeecCCCCChHHHHHHhccchHH
Q 007334 265 ---GFGDPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 265 ---~~~~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
.+ .++++||+++.+|..+|+.+.+.+-.
T Consensus 298 ~~~~i-y~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 298 VNEKV-YTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp --CEE-EEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred cCcce-EEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 11 35789999999999999998887654
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-08 Score=110.42 Aligned_cols=61 Identities=26% Similarity=0.342 Sum_probs=48.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-------cCeEEEEEecCCCcccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-------QGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-------~~~~~~liDTpG~~~~~ 386 (607)
..+|+|+|.||||||||+|+|+|..... +.+++|++...+.+.| .+..+.|+||||+.+..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 3689999999999999999999986433 6677777766655544 56789999999998753
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.64 E-value=4e-08 Score=100.01 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=74.3
Q ss_pred HHHHHhhcCCcee-ecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 339 TLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 339 slin~l~~~~~~~-~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
+|+.+++... +. ....|.+. |.+...+..++ .+.+||| +.++.. + ...+++++|++|+|+|+++
T Consensus 32 sl~~~~~~~~-f~~~~~~pTiG-d~~~~~~~~~~-~~~iwD~--qer~~~------l----~~~~~~~ad~vilV~D~~~ 96 (301)
T 1u0l_A 32 ERILCKLRGK-FRLQNLKIYVG-DRVEYTPDETG-SGVIENV--LHRKNL------L----TKPHVANVDQVILVVTVKM 96 (301)
T ss_dssp CEEEEEECGG-GTTTTCCCCTT-CEEEEECCCSS-SEEEEEE--CCCSCE------E----TTTTEESCCEEEEEECSST
T ss_pred cEEEEEEccc-ccccCCCCCCc-cEEEEEEcCCC-eEEEEEE--ccccce------e----eccccccCCEEEEEEeCCC
Confidence 5666666432 22 11222222 44433332333 7899999 433321 1 1246789999999999987
Q ss_pred h------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHH
Q 007334 418 V------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 418 ~------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
+ .....++|+++|+||+||.+.... +... ++.+.+... .+++++||++|.|++++|.
T Consensus 97 ~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v----~~~~-----~~~~~~~~~--~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 97 PETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDL----RKVR-----ELEEIYSGL--YPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp TCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH----HHHH-----HHHHHHTTT--SCEEECCTTTCTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhH----HHHH-----HHHHHHhhh--CcEEEEECCCCcCHHHHHH
Confidence 5 112258999999999999754210 1111 111112211 6899999999999999997
Q ss_pred HHH
Q 007334 486 QVI 488 (607)
Q Consensus 486 ~i~ 488 (607)
.+.
T Consensus 166 ~l~ 168 (301)
T 1u0l_A 166 YLK 168 (301)
T ss_dssp HHS
T ss_pred Hhc
Confidence 664
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.3e-08 Score=101.41 Aligned_cols=139 Identities=25% Similarity=0.321 Sum_probs=79.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhh------cCCceeecCC----------------CCce-------eeeEEE------EE
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL------QEDRVLVGPE----------------AGLT-------RDSVRV------HF 367 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~------~~~~~~~~~~----------------~gtT-------~~~~~~------~~ 367 (607)
.+..|+++|.+||||||++..|. |.....+..- .++. .++... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999887 3332222210 1110 000000 00
Q ss_pred EEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHh-cCCcEEEEEeCccCCCC
Q 007334 368 EYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVE-EGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 368 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~-~~~p~ivv~NK~Dl~~~ 439 (607)
...+..+.|+||||..... .+.+...........+|.+++|+|++.+ ..+. ...+..+|+||+|....
T Consensus 179 ~~~~~DvVIIDTaGrl~~d----~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKED----KALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HHTTCSEEEEECCCCSSCC----HHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSCSS
T ss_pred HhCCCCEEEEECCCcccch----HHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCCccc
Confidence 0134689999999964321 1122223333445578999999999876 2222 33456799999998754
Q ss_pred cCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 440 RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
... .. .+.. ..+.|+.+++. |+++++
T Consensus 255 gG~------~l-----s~~~----~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 255 GGG------AL-----SAVA----ATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp HHH------HH-----HHHH----TTCCCEEEEEC--SSSTTC
T ss_pred ccH------HH-----HHHH----HHCCCEEEEEc--CCChHH
Confidence 211 00 1111 24779988886 776653
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=98.09 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=85.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc----eeecCCCCceeeeEEEEEEEcC-eEEEEEecCCCcccccccCcchhHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR----VLVGPEAGLTRDSVRVHFEYQG-RTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~----~~~~~~~gtT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
...++++|++|+|||||+|.|+|... .+......+|+..+ .+.... ..+.++|+||+.... ...+.+ ..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~--~~~~~~--L~ 142 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN--FPPDTY--LE 142 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS--CCHHHH--HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH--HHHHHH--HH
Confidence 35799999999999999999998421 11111112233211 111111 257899999975321 111111 11
Q ss_pred HHHHHhhccEEEEEeccc--hh-------hHHhcCCcEEEEEeCccCC---------CCcCchHHHHHHHHhcHHHHHhh
Q 007334 399 SRKNLMRAHVVALVLDAE--EV-------RAVEEGRGLVVIVNKMDLL---------SGRQNSALYKRVKEAVPQEIQTV 460 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~--~~-------~~~~~~~p~ivv~NK~Dl~---------~~~~~~~~~~~~~~~~~~~~~~~ 460 (607)
.-.+...+..++ ++.. .. .....++|+++|.||.|+. +.....+..+.+.+...+.+.+.
T Consensus 143 -~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 143 -KMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp -HTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred -HcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 112334566665 7876 22 2233589999999999975 11112222222222111111111
Q ss_pred CCCCCCCCEEEccc--CCCCCHHHHHHHHHHHH
Q 007334 461 IPQVTGIPVVFTSA--LEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 461 ~~~~~~~~~v~iSA--~~g~gv~~l~~~i~~~~ 491 (607)
......++.+|+ ..+.|++++.+.+.+.+
T Consensus 221 --g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 221 --GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp --TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred --CCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 012347899999 66778999999987764
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-08 Score=102.00 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=68.7
Q ss_pred CeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccc----------hh-----------hHH----hcCC
Q 007334 371 GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE----------EV-----------RAV----EEGR 425 (607)
Q Consensus 371 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~----------~~-----------~~~----~~~~ 425 (607)
...+.||||+|+.+.... ...+++++|++|+|+|.+ +. ... ..+.
T Consensus 182 ~v~l~iwDtaGQe~~r~~----------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRK----------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp --EEEEEEECCSTTGGGG----------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred ceeeEEEECCCchhhhHH----------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 467899999998655321 234677899999999997 22 111 2478
Q ss_pred cEEEEEeCccCCCCcCc-------------------hHHHHHHHHhcHHHHHhh---C--CC--CCCCCEEEcccCCCCC
Q 007334 426 GLVVIVNKMDLLSGRQN-------------------SALYKRVKEAVPQEIQTV---I--PQ--VTGIPVVFTSALEGRG 479 (607)
Q Consensus 426 p~ivv~NK~Dl~~~~~~-------------------~~~~~~~~~~~~~~~~~~---~--~~--~~~~~~v~iSA~~g~g 479 (607)
|+|||+||+|+.+.... ....+...+-+...+... - .. ...+.++++||+++.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 99999999998532100 001122111111111111 0 00 1234578999999999
Q ss_pred HHHHHHHHHHHHHH
Q 007334 480 RIAVMHQVIDTYQK 493 (607)
Q Consensus 480 v~~l~~~i~~~~~~ 493 (607)
|+++|+.+.+.+.+
T Consensus 332 V~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 332 VKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.6e-07 Score=96.10 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=85.8
Q ss_pred CCEEEEecCCCCchhHHHHHhh------ccceeeeccCCCCce------------eeeeEEE---------------Eee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDDHV------------TRDIREG---------------LAK 166 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~------------T~~~~~~---------------~~~ 166 (607)
...|+++|.+||||||+++.|. |.+...+...+.... ....... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999997 444444432221000 0000000 000
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCc
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCES 246 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~ 246 (607)
..+..+.|+||||..... .....+. .. ......+|.+++|+|++.+... ....+.+.+. -.+..+|+||+|.
T Consensus 180 ~~~~DvVIIDTaGrl~~d--~~lm~el-~~-i~~~~~pd~vlLVvDA~~gq~a--~~~a~~f~~~--~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKED--KALIEEM-KQ-ISNVIHPHEVILVIDGTIGQQA--YNQALAFKEA--TPIGSIIVTKLDG 251 (443)
T ss_dssp HTTCSEEEEECCCCSSCC--HHHHHHH-HH-HHHHHCCSEEEEEEEGGGGGGH--HHHHHHHHHS--CTTEEEEEECCSS
T ss_pred hCCCCEEEEECCCcccch--HHHHHHH-HH-HHHhhcCceEEEEEeCCCchhH--HHHHHHHHhh--CCCeEEEEECCCC
Confidence 134789999999976322 1222222 11 2334467999999999875332 3344555443 2356799999998
Q ss_pred ccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 247 LHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
... ...........+. ++.+++. |+++++
T Consensus 252 ~~~----gG~~ls~~~~~g~-PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 252 SAK----GGGALSAVAATGA-PIKFIGT--GEKIDD 280 (443)
T ss_dssp CSS----HHHHHHHHHTTCC-CEEEEEC--SSSTTC
T ss_pred ccc----ccHHHHHHHHHCC-CEEEEEc--CCChHH
Confidence 653 1223333445555 6667774 888755
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-07 Score=94.73 Aligned_cols=117 Identities=18% Similarity=0.279 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeec-------CCCCcee-eeEEEEEEEcC--eEEEEEecCCCcccccccC----
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVG-------PEAGLTR-DSVRVHFEYQG--RTVYLVDTAGWLQREKEKG---- 390 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~-------~~~gtT~-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~---- 390 (607)
++++++|++|+|||||+|.|+|......+ +.+.++. ..+...+...+ ..+.++|++|+........
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999975322111 1122221 11111111112 2678999999865421111
Q ss_pred cchhHHHHHHHHH--------------hhccEEEEEeccc-hh---------hHHhcCCcEEEEEeCccCCCCcC
Q 007334 391 PASLSVMQSRKNL--------------MRAHVVALVLDAE-EV---------RAVEEGRGLVVIVNKMDLLSGRQ 441 (607)
Q Consensus 391 ~~~~~~~~~~~~i--------------~~ad~~llViD~~-~~---------~~~~~~~p~ivv~NK~Dl~~~~~ 441 (607)
...+........+ .+++++++++|.. .+ ..+...+++|+|+||+|.....+
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKADTMTLEE 157 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTGGGSCHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEeccccCCHHH
Confidence 1111111111221 2369999999964 32 22233489999999999887533
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4.3e-08 Score=97.60 Aligned_cols=58 Identities=33% Similarity=0.507 Sum_probs=39.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~ 183 (607)
.+|+++|.||||||||+|+|++.....++..+| +|+..... . .+..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g--~T~~~~~~--~-~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPG--ITKGIQWF--S-LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEE--E-CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCC--CccceEEE--E-eCCCEEEEECCCcccC
Confidence 689999999999999999999988766777787 77766432 2 2457999999999853
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.7e-07 Score=94.34 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=84.5
Q ss_pred CCEEEEecCCCCchhHHHHHhh------ccceeeeccCCCCc--------------eeeeeE-------------EEEee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDDH--------------VTRDIR-------------EGLAK 166 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~~--------------~T~~~~-------------~~~~~ 166 (607)
...|+++|.+||||||++..|. +.+...+...+... +..... .....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 3579999999999999999997 44443332111100 000000 00001
Q ss_pred eCCeeEEEecCCCCcc--ccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCC
Q 007334 167 LGDLRFKVLDSAGLET--EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKC 244 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~--~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~ 244 (607)
..+..+.|+||||... ..+ ....+. ......+ ..|.+++|+|+..+.. ...+++.+.+. -.+..+|+||+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~--~lm~el-~~i~~~~-~pd~vlLVlDa~~gq~--a~~~a~~f~~~--~~~~gVIlTKl 248 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEET--KLLEEM-KEMYDVL-KPDDVILVIDASIGQK--AYDLASRFHQA--SPIGSVIITKM 248 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTT--HHHHHH-HHHHHHH-CCSEEEEEEEGGGGGG--GHHHHHHHHHH--CSSEEEEEECG
T ss_pred hcCCCEEEEECCCCccccCCH--HHHHHH-HHHHHhh-CCcceEEEEeCccchH--HHHHHHHHhcc--cCCcEEEEecc
Confidence 1367899999999764 222 122222 2222222 5689999999986532 23455555544 24678999999
Q ss_pred CcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 245 ESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 245 D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.... ...........+. ++.+++. |+++++
T Consensus 249 D~~a~----~G~als~~~~~g~-Pi~fig~--Ge~v~d 279 (433)
T 3kl4_A 249 DGTAK----GGGALSAVVATGA-TIKFIGT--GEKIDE 279 (433)
T ss_dssp GGCSC----HHHHHHHHHHHTC-EEEEEEC--CSSSSC
T ss_pred ccccc----chHHHHHHHHHCC-CEEEEEC--CCChHh
Confidence 97643 2233334444565 6667775 887753
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=92.35 Aligned_cols=139 Identities=24% Similarity=0.266 Sum_probs=76.2
Q ss_pred CceEEEEcCCCCchhHHHHHhh------cCCceeec----------------CCCCcee-------eeEE------EEEE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALL------QEDRVLVG----------------PEAGLTR-------DSVR------VHFE 368 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~------~~~~~~~~----------------~~~gtT~-------~~~~------~~~~ 368 (607)
+..|+++|.+||||||++..|. |.....+. ...|... ++.. ....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 5568899999999999999887 32222211 1111110 0000 0000
Q ss_pred EcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHh-cCCcEEEEEeCccCCCCc
Q 007334 369 YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVE-EGRGLVVIVNKMDLLSGR 440 (607)
Q Consensus 369 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~-~~~p~ivv~NK~Dl~~~~ 440 (607)
..+..+.|+||||..... .....+...........+|.+++|+|++.+ ..+. .-.+..+|+||+|.....
T Consensus 177 ~~~~DvvIIDTaGr~~~~--~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~~~~~gVIlTKlD~~a~~ 254 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYG--EETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQASPIGSVIITKMDGTAKG 254 (433)
T ss_dssp TTTCSEEEEEECCCSSSC--CTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHHCSSEEEEEECGGGCSCH
T ss_pred hcCCCEEEEECCCCcccc--CCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcccCCcEEEEecccccccc
Confidence 135678999999954310 011111112222223357999999999876 1222 335688999999986442
Q ss_pred CchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHH
Q 007334 441 QNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
. ..+. .. . ..+.|+.+++. |++++
T Consensus 255 G--~als----~~-----~----~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 255 G--GALS----AV-----V----ATGATIKFIGT--GEKID 278 (433)
T ss_dssp H--HHHH----HH-----H----HHTCEEEEEEC--CSSSS
T ss_pred h--HHHH----HH-----H----HHCCCEEEEEC--CCChH
Confidence 1 1111 11 0 12679988886 77764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-06 Score=85.99 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=82.0
Q ss_pred CEEEEecCCCCchhHHHHHhh------ccceeeeccCCCCcee------------eeeEEE---------------Eeee
Q 007334 121 PTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDDHVT------------RDIREG---------------LAKL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~T------------~~~~~~---------------~~~~ 167 (607)
..|+++|.+|+||||+++.|. +.+...+...+....+ .+.... ....
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~ 178 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS 178 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 478999999999999999987 3344333322110000 000000 0011
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCES 246 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~ 246 (607)
.+..+.|+||||.......+....+.. . ...+..+|.+++|+|+..+ .......+.+.+ ..+ ..+|+||+|.
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~-~-i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~---~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMK-N-IYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ---ASKIGTIIITKMDG 251 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHH-H-HHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH---TCTTEEEEEECGGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHH-H-HHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh---hCCCCEEEEeCCCC
Confidence 566899999999874101111111111 1 1234578999999999754 222233333333 345 6789999997
Q ss_pred ccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 247 LHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
... ...........+. ++.+++ .|+++++
T Consensus 252 ~~~----~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 252 TAK----GGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp CTT----HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred Ccc----hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 642 2223334445555 566665 6777754
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-06 Score=80.69 Aligned_cols=99 Identities=14% Similarity=-0.095 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhH-HHH---HHHHHhh--CCCCcEEEEecCC-CcccCCcCcHHHHHHHH--H
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLD-LEV---GKWLRKH--APQIKPIVAMNKC-ESLHNGTGSLAGAAAES--L 262 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~---~~~l~~~--~~~~p~ilV~NK~-D~~~~~~~~~~~~~~~~--~ 262 (607)
.....+..|+.++|++|||+|.++....+- .++ ...|.+. ..+.|+++.+||. |+...- ...+....+ .
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am--s~~EI~e~L~L~ 191 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--PCFYLAHELHLN 191 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC--CHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC--CHHHHHHHcCCc
Confidence 445667789999999999999988633222 223 2333332 2478999999996 664432 222221111 1
Q ss_pred hc-CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 263 ML-GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 263 ~~-~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.+ ..+.+..|||.+|+|+.|-+++|.+.+.
T Consensus 192 ~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 192 LLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp GGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 11 1235689999999999999999998764
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.4e-07 Score=89.83 Aligned_cols=77 Identities=21% Similarity=0.154 Sum_probs=53.1
Q ss_pred HHhhccEEEEEeccchh------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 402 NLMRAHVVALVLDAEEV------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
++.++|++++|+|++++ .....++|+++|+||+|+.+.... ...+... +..+. .+.++
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v-~~~~~~~-----~~~~~----~g~~~ 145 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEK-KELERWI-----SIYRD----AGYDV 145 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH-HHHHHHH-----HHHHH----TTCEE
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcccc-HHHHHHH-----HHHHH----CCCeE
Confidence 67889999999999865 112368999999999999764210 0011111 11111 25689
Q ss_pred EEcccCCCCCHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVI 488 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~ 488 (607)
+++||++|.|++++++.+.
T Consensus 146 ~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 146 LKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EECCTTTCTTHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHhhcc
Confidence 9999999999999987654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.13 E-value=2.8e-06 Score=85.93 Aligned_cols=140 Identities=23% Similarity=0.243 Sum_probs=77.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhc------CCceeecCCC---Cc-----------eeeeEEE---------------EEE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ------EDRVLVGPEA---GL-----------TRDSVRV---------------HFE 368 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~------~~~~~~~~~~---gt-----------T~~~~~~---------------~~~ 368 (607)
+..++++|.+|+||||++..|.+ .....+..-+ +. ..+.+.. .+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998873 2222211110 00 0000000 000
Q ss_pred EcCeEEEEEecCCCcccccccCcchh-HHHHHHHHHhhccEEEEEeccchh-------hHHhcCCc-EEEEEeCccCCCC
Q 007334 369 YQGRTVYLVDTAGWLQREKEKGPASL-SVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRG-LVVIVNKMDLLSG 439 (607)
Q Consensus 369 ~~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p-~ivv~NK~Dl~~~ 439 (607)
..+..+.|+||||..... ..+.+ ..+........+|.+++|+|++.+ ..+....| ..+|+||+|....
T Consensus 178 ~~~~D~ViIDTpg~~~~~---~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~~~~~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG---EEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAK 254 (297)
T ss_dssp HTTCSEEEEECCCSCCTT---CHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHTCTTEEEEEECGGGCTT
T ss_pred hCCCCEEEEeCCCCcccc---cHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHHHhhCCCCEEEEeCCCCCcc
Confidence 145679999999965410 00111 111122334479999999999765 22233566 7889999997543
Q ss_pred cCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 440 RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.. .+. .+.. ..+.|+.+++ .|++++++
T Consensus 255 ~g------~~~-----~~~~----~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 255 GG------GAL-----SAVA----ATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp HH------HHH-----HHHH----TTTCCEEEEE--CSSSTTCE
T ss_pred hH------HHH-----HHHH----HHCcCEEEEe--CCCChhhc
Confidence 11 010 1111 2367998887 67777543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=88.16 Aligned_cols=78 Identities=9% Similarity=0.185 Sum_probs=42.5
Q ss_pred eeEEEecCCCCccccC---chhHHHHHHHHHHHHhhcc-CEEEEEEecCCCCCHhH-HHHHHHHHhhCCCCcEEEEecCC
Q 007334 170 LRFKVLDSAGLETEAT---SGSILDRTAGMTANVLAKT-QFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKC 244 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~---~~~~~~~~~~~~~~~~~~a-d~vl~VvD~s~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~ 244 (607)
..+.++|.||+..... ..............++... .+++.+++........+ ..+++.+... +.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~--g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE--GDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS--CCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc--CCceEEEecch
Confidence 3589999999874321 1122234455555665554 46666666543333222 2334444332 67999999999
Q ss_pred CcccC
Q 007334 245 ESLHN 249 (607)
Q Consensus 245 D~~~~ 249 (607)
|+...
T Consensus 225 Dlv~~ 229 (608)
T 3szr_A 225 DLVDK 229 (608)
T ss_dssp GGSSS
T ss_pred hhcCc
Confidence 98854
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.3e-05 Score=83.25 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=41.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc---------------ceeeeccCCCCceeeeeEEEEeeeC-----------CeeEE
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR---------------REALVYNTPDDHVTRDIREGLAKLG-----------DLRFK 173 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~---------------~~~~v~~~~~~~~T~~~~~~~~~~~-----------~~~~~ 173 (607)
...|+|+|.+|+|||||+|+|++. .....+..+ +|+..+.|...+. +..+.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~---t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG---GSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC---SSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC---CCCCceeEEEEecCccccccCCCCcceEE
Confidence 568999999999999999999975 222222111 4455555544442 35699
Q ss_pred EecCCCCcc
Q 007334 174 VLDSAGLET 182 (607)
Q Consensus 174 liDTpG~~~ 182 (607)
++||||+..
T Consensus 144 llDTeG~~~ 152 (447)
T 3q5d_A 144 LMDTQGTFD 152 (447)
T ss_dssp EEEEECCCS
T ss_pred EEcCCcccc
Confidence 999999873
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.81 E-value=4.9e-05 Score=80.84 Aligned_cols=113 Identities=22% Similarity=0.220 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCCchhHHHHHhh-------cCCceeecCCCCc--e------------eeeEEE---------------E
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL-------QEDRVLVGPEAGL--T------------RDSVRV---------------H 366 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~-------~~~~~~~~~~~gt--T------------~~~~~~---------------~ 366 (607)
.+..|+++|.+||||||++..|. |.....+..-+.. . .+.+.. .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999887 4332222111100 0 010000 0
Q ss_pred EEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCCc-EEEEEeCccCCC
Q 007334 367 FEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRG-LVVIVNKMDLLS 438 (607)
Q Consensus 367 ~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p-~ivv~NK~Dl~~ 438 (607)
+...+..+.|+||||..... ............+..+|.+++|+|++.+ ..+....+ .-+|+||+|...
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~----~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~~~~f~~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVD----EAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDA 254 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTC----HHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHHHHHHHHHSCCCCEEEECTTSSS
T ss_pred HHhCCCCEEEEECCCccccc----HHHHHHHHHHHHhhcCcceeEEeecchhHHHHHHHHHHhccCCCeEEEEecCCCCc
Confidence 01145689999999954321 1111112223344478999999999865 22233345 357999999754
Q ss_pred C
Q 007334 439 G 439 (607)
Q Consensus 439 ~ 439 (607)
.
T Consensus 255 ~ 255 (433)
T 2xxa_A 255 R 255 (433)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.7e-05 Score=78.44 Aligned_cols=98 Identities=14% Similarity=-0.095 Sum_probs=63.7
Q ss_pred HHHHHHHHhhccCEEEEEEecCCCCCHhH-HH---HHHHHHhh--CCCCcEEEEecC-CCcccCCcCcHHHHHHHH--Hh
Q 007334 193 TAGMTANVLAKTQFAIFMIDVRSGLHPLD-LE---VGKWLRKH--APQIKPIVAMNK-CESLHNGTGSLAGAAAES--LM 263 (607)
Q Consensus 193 ~~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~---~~~~l~~~--~~~~p~ilV~NK-~D~~~~~~~~~~~~~~~~--~~ 263 (607)
....+..|+.++|++|||||+++....+. .+ +...+.+. ..+.|+++.+|| .|+...-. ..+....+ ..
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams--~~EI~e~L~L~~ 277 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP--CFYLAHELHLNL 277 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC--HHHHHHHTTGGG
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC--HHHHHHHcCCcc
Confidence 34566789999999999999988653222 22 22445332 357899999997 57754322 22221111 11
Q ss_pred c-CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 264 L-GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 264 ~-~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+ ....+..+||.+|+|+.|-+++|.+.+.
T Consensus 278 l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 278 LNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 1 1225689999999999999999987653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=6.6e-05 Score=76.86 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=80.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce--------eeeeEEEEe-------------------ee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV--------TRDIREGLA-------------------KL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~--------T~~~~~~~~-------------------~~ 167 (607)
-.|+|+|.+|||||||++.|.+. +............ .+......+ ..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 47999999999999999999853 2222211110000 000000000 01
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
.+..+.++||+|...... ....+.. .... .-..|-.++|+|+..+. .-.+.++.+.+. ....++++||.|..
T Consensus 210 ~~~d~vliDtaG~~~~~~--~l~~eL~-~i~r-al~~de~llvLDa~t~~--~~~~~~~~~~~~--~~it~iilTKlD~~ 281 (328)
T 3e70_C 210 RGIDVVLIDTAGRSETNR--NLMDEMK-KIAR-VTKPNLVIFVGDALAGN--AIVEQARQFNEA--VKIDGIILTKLDAD 281 (328)
T ss_dssp HTCSEEEEEECCSCCTTT--CHHHHHH-HHHH-HHCCSEEEEEEEGGGTT--HHHHHHHHHHHH--SCCCEEEEECGGGC
T ss_pred ccchhhHHhhccchhHHH--HHHHHHH-HHHH-HhcCCCCEEEEecHHHH--HHHHHHHHHHHh--cCCCEEEEeCcCCc
Confidence 245678999999863322 1222221 1122 23478899999987652 112333334332 22457888999964
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 248 HNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.. ...........+. ++.+++ +|+++++
T Consensus 282 a~----~G~~l~~~~~~~~-pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 282 AR----GGAALSISYVIDA-PILFVG--VGQGYDD 309 (328)
T ss_dssp SC----CHHHHHHHHHHTC-CEEEEE--CSSSTTC
T ss_pred cc----hhHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence 32 2334445555666 677777 7888754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=97.73 E-value=4.6e-05 Score=84.83 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++|+|++|+|||||++.|+|-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999999986
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.1e-05 Score=83.62 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=42.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC---------------CceeecCCCCceeeeEEEEEEEc-----------CeEEEEEe
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE---------------DRVLVGPEAGLTRDSVRVHFEYQ-----------GRTVYLVD 378 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~---------------~~~~~~~~~gtT~~~~~~~~~~~-----------~~~~~liD 378 (607)
.-|+|+|.+++|||||+|.|+|. ..... ...++|+.+..+.+.|. ...+.++|
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f-~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGF-SWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSS-CSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhccccccccccccccccccee-cCCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 35789999999999999999974 11122 22336666666766663 24688999
Q ss_pred cCCCccc
Q 007334 379 TAGWLQR 385 (607)
Q Consensus 379 TpG~~~~ 385 (607)
|||+.+.
T Consensus 147 TeG~~~~ 153 (447)
T 3q5d_A 147 TQGTFDS 153 (447)
T ss_dssp EECCCSS
T ss_pred CCccccc
Confidence 9998655
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00047 Score=73.78 Aligned_cols=148 Identities=13% Similarity=0.168 Sum_probs=77.6
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce------e--eeeEEEEee-------------------e
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV------T--RDIREGLAK-------------------L 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~------T--~~~~~~~~~-------------------~ 167 (607)
-.|+|+|.+|||||||++.|.+. +..+......... . .....+.+. .
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh
Confidence 47999999999999999999853 2222211111000 0 000000000 1
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhh-----ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLA-----KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-----~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
.+..+.|+||+|...... ....+. ......++ ..+-+++|+|++.+. .....++.+.+.. + ...+|+|
T Consensus 374 ~~~DvVLIDTaGrl~~~~--~lm~EL-~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~-~-itgvIlT 446 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKS--HLMEEL-KKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAV-G-LTGITLT 446 (503)
T ss_dssp TTCSEEEECCCCSCCCHH--HHHHHH-HHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHT-C-CSEEEEE
T ss_pred cCCCEEEEeCCCccchhh--hHHHHH-HHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhc-C-CCEEEEE
Confidence 345789999999863321 111111 12222222 245789999988652 2223344444321 2 3467899
Q ss_pred CCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 243 K~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.|-... ...........+. ++.++ -+|+++++
T Consensus 447 KLD~tak----gG~~lsi~~~~~~-PI~fi--g~Ge~vdD 479 (503)
T 2yhs_A 447 KLDGTAK----GGVIFSVADQFGI-PIRYI--GVGERIED 479 (503)
T ss_dssp CGGGCSC----CTHHHHHHHHHCC-CEEEE--ECSSSGGG
T ss_pred cCCCccc----ccHHHHHHHHHCC-CEEEE--ecCCChhh
Confidence 9996432 1233444555565 55554 36777765
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0001 Score=69.57 Aligned_cols=84 Identities=15% Similarity=0.043 Sum_probs=57.6
Q ss_pred HHHHHhhccEEEEEeccchh-------hH---H--------hcCCcEEEEEeCc-cCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 399 SRKNLMRAHVVALVLDAEEV-------RA---V--------EEGRGLVVIVNKM-DLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~-------~~---~--------~~~~p~ivv~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
...|+.++|++|+|||+++. +. . ..+.|++|++||. |+.......+.. +.+. +..
T Consensus 119 Wr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~----e~L~--L~~ 192 (227)
T 3l82_B 119 IQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLA----HELH--LNL 192 (227)
T ss_dssp HHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHH----HHTT--GGG
T ss_pred HHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHH----HHcC--CcC
Confidence 35788999999999999875 11 0 1467999999995 776554332222 2221 111
Q ss_pred hCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 460 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+. ....+..|||++|+|+.+-++++...+
T Consensus 193 -l~--R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 193 -LN--HPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp -GC--SCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred -CC--CCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 11 245789999999999999999887543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.59 E-value=7.8e-05 Score=76.32 Aligned_cols=138 Identities=22% Similarity=0.258 Sum_probs=74.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCC------ceeec-CC---------------CCceeeeEEEE--E-----------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQED------RVLVG-PE---------------AGLTRDSVRVH--F----------- 367 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~------~~~~~-~~---------------~gtT~~~~~~~--~----------- 367 (607)
.+--++++|++|+||||+++.|.+.. ..... +. .|+. .+... .
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~--~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK--VIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCE--EECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCce--EEeccccCCHHHHHHHHHH
Confidence 34578999999999999999997531 11110 00 0000 00000 0
Q ss_pred --EEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHh-cCCcEEEEEeCccCC
Q 007334 368 --EYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVE-EGRGLVVIVNKMDLL 437 (607)
Q Consensus 368 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~-~~~p~ivv~NK~Dl~ 437 (607)
...+..+.++||+|...... .....+. .....-.+|-.++|+|++.+ ..+. .-...++++||+|..
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~-~l~~eL~---~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNR-NLMDEMK---KIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTT-CHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred HHHhccchhhHHhhccchhHHH-HHHHHHH---HHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 01245677899999744311 1111121 11122248999999998875 1222 223457889999974
Q ss_pred CCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 438 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
.... ..+.. .. ..+.|+.+++ +|++++++
T Consensus 282 a~~G--~~l~~---------~~----~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 282 ARGG--AALSI---------SY----VIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp SCCH--HHHHH---------HH----HHTCCEEEEE--CSSSTTCE
T ss_pred cchh--HHHHH---------HH----HHCCCEEEEe--CCCCcccc
Confidence 4321 11111 10 1167999988 78887553
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00012 Score=73.84 Aligned_cols=144 Identities=7% Similarity=0.080 Sum_probs=74.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc-------ceeeeccCCCCceee------------eeEEE---------EeeeCCee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR-------REALVYNTPDDHVTR------------DIREG---------LAKLGDLR 171 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~-------~~~~v~~~~~~~~T~------------~~~~~---------~~~~~~~~ 171 (607)
...|+++|.+||||||++..|.+. +...+...+...... ..... .....+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 358999999999999999998632 223222211100000 00000 00124568
Q ss_pred EEEecCCCCccccCchhHHHHHHHHHHHHhh--ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccC
Q 007334 172 FKVLDSAGLETEATSGSILDRTAGMTANVLA--KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHN 249 (607)
Q Consensus 172 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~--~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~ 249 (607)
+.|+||||...... .........+. ..+.+++|+|++.+. . ++.++.+....-...-+|+||.|....
T Consensus 185 lvIiDT~G~~~~~~------~~~~el~~~l~~~~~~~~~lVl~at~~~--~--~~~~~~~~~~~l~~~giVltk~D~~~~ 254 (296)
T 2px0_A 185 HVFVDTAGRNFKDP------QYIDELKETIPFESSIQSFLVLSATAKY--E--DMKHIVKRFSSVPVNQYIFTKIDETTS 254 (296)
T ss_dssp EEEEECCCCCTTSH------HHHHHHHHHSCCCTTEEEEEEEETTBCH--H--HHHHHTTTTSSSCCCEEEEECTTTCSC
T ss_pred EEEEeCCCCChhhH------HHHHHHHHHHhhcCCCeEEEEEECCCCH--H--HHHHHHHHHhcCCCCEEEEeCCCcccc
Confidence 99999999873221 11112222332 356789999987542 2 232333322111123567799997643
Q ss_pred CcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 250 GTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
. ..........+. ++.+++ .|+++
T Consensus 255 ~----g~~~~~~~~~~~-pi~~i~--~ge~v 278 (296)
T 2px0_A 255 L----GSVFNILAESKI-GVGFMT--NGQNV 278 (296)
T ss_dssp C----HHHHHHHHTCSC-CCSEEC--CSSCT
T ss_pred h----hHHHHHHHHHCc-CEEEEE--CCCCC
Confidence 2 234444555565 444443 45555
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0004 Score=73.77 Aligned_cols=120 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCEEEEecCCCCchhHHHHHhh-------ccceeeeccCCCCcee------------eeeEEE---------------Ee
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI-------RRREALVYNTPDDHVT------------RDIREG---------------LA 165 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~-------~~~~~~v~~~~~~~~T------------~~~~~~---------------~~ 165 (607)
...|+++|.+||||||+...|. |.+...+...+..... .+.... ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999987 5555444333321000 011000 00
Q ss_pred eeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCC
Q 007334 166 KLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKC 244 (607)
Q Consensus 166 ~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~ 244 (607)
...+..+.|+||||..... +....... ....+..+|.+++|+|+..+... ....+.+.. ..+ .-+|+||+
T Consensus 180 ~~~~~D~VIIDTpG~l~~~--~~l~~~L~--~~~~~~~p~~vllVvda~~g~~~--~~~~~~f~~---~l~i~gvVlnK~ 250 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVD--EAMMDEIK--QVHASINPVETLFVVDAMTGQDA--ANTAKAFNE---ALPLTGVVLTKV 250 (433)
T ss_dssp HHTTCSEEEEECCCCCTTC--HHHHHHHH--HHHHHSCCSEEEEEEETTBCTTH--HHHHHHHHH---HSCCCCEEEECT
T ss_pred HhCCCCEEEEECCCccccc--HHHHHHHH--HHHHhhcCcceeEEeecchhHHH--HHHHHHHhc---cCCCeEEEEecC
Confidence 1146789999999976321 11111111 12334578999999999865332 223333332 234 34799999
Q ss_pred Cccc
Q 007334 245 ESLH 248 (607)
Q Consensus 245 D~~~ 248 (607)
|...
T Consensus 251 D~~~ 254 (433)
T 2xxa_A 251 DGDA 254 (433)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 9754
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00017 Score=71.35 Aligned_cols=85 Identities=18% Similarity=0.074 Sum_probs=59.0
Q ss_pred HHHHHHhhccEEEEEeccchh-------h-----H----H--hcCCcEEEEEeC-ccCCCCcCchHHHHHHHHhcHHHHH
Q 007334 398 QSRKNLMRAHVVALVLDAEEV-------R-----A----V--EEGRGLVVIVNK-MDLLSGRQNSALYKRVKEAVPQEIQ 458 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~-------~-----~----~--~~~~p~ivv~NK-~Dl~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
....|+.++|++|+|||+++. + . . ..+.|++|.+|| -|+.......+. .+.+. +.
T Consensus 203 lWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI----~e~L~--L~ 276 (312)
T 3l2o_B 203 QIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYL----AHELH--LN 276 (312)
T ss_dssp HHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHH----HHHTT--GG
T ss_pred HHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHH----HHHcC--Cc
Confidence 345788999999999999875 1 1 0 157899999997 588665433222 22221 11
Q ss_pred hhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 459 TVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
. +. ....+..+||++|+|+.+-++++...+
T Consensus 277 ~-l~--r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 277 L-LN--HPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp G-GC--SCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred c-CC--CcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 1 11 245789999999999999999988754
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00044 Score=69.93 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=75.7
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce----------eeeeEEEEe-----------------ee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV----------TRDIREGLA-----------------KL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~----------T~~~~~~~~-----------------~~ 167 (607)
-.|+|+|.+|||||||++.|.+. +............ .....+... ..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999842 2222111110000 000000000 01
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHH---HH-HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecC
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGM---TA-NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 243 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~---~~-~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 243 (607)
.+..+.++||+|...... ....+...+ .. ......+.+++++|+..+.... +.+..+.+. ....++++||
T Consensus 183 ~~~d~~llDt~G~~~~~~--~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~--~~~~~~~~~--~~~t~iivTh 256 (304)
T 1rj9_A 183 RGYDLLFVDTAGRLHTKH--NLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGL--EQAKKFHEA--VGLTGVIVTK 256 (304)
T ss_dssp HTCSEEEECCCCCCTTCH--HHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHH--HHHHHHHHH--HCCSEEEEEC
T ss_pred CCCCEEEecCCCCCCchH--HHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHH--HHHHHHHHH--cCCcEEEEEC
Confidence 234678999999863321 111111111 11 1233567789999987653322 233333322 1245788899
Q ss_pred CCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 244 CESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 244 ~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.|..... ..........+. ++.+++ .|+++++
T Consensus 257 ~d~~a~g----g~~l~i~~~~~~-pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 257 LDGTAKG----GVLIPIVRTLKV-PIKFVG--VGEGPDD 288 (304)
T ss_dssp TTSSCCC----TTHHHHHHHHCC-CEEEEE--CSSSTTC
T ss_pred Ccccccc----cHHHHHHHHHCC-CeEEEe--CCCChhh
Confidence 9865321 122333444565 566665 5665544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00027 Score=71.53 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=75.9
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce------------eeeeEEE------------E---eee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV------------TRDIREG------------L---AKL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~------------T~~~~~~------------~---~~~ 167 (607)
..|+|+|.+|+||||++..|.+. +...+........ ..+.... . ...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~ 184 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALA 184 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHh
Confidence 47999999999999999988742 2222221111000 0000000 0 011
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHh-----hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVL-----AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~-----~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
.+..+.++||||.... ...+..+. ......+ ...|.+++|+|+..+ .......+.+.+. -...-+|+|
T Consensus 185 ~~~dvvIiDtpg~~~~--~~~l~~eL-~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~--~~i~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHT--KKNLMEEL-RKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEA--VNVTGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCSC--HHHHHHHH-HHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHH--SCCCEEEEE
T ss_pred cCCCEEEEECCCchhh--HHHHHHHH-HHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhc--CCCCEEEEe
Confidence 3457999999996411 11122122 2223333 247889999999732 2222222333322 123457789
Q ss_pred CCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 243 K~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.|..... ..........+. ++.+++ .|+++++
T Consensus 258 k~D~~~~g----G~~l~~~~~~~~-Pi~~i~--~Ge~~~d 290 (306)
T 1vma_A 258 KLDGTAKG----GITLAIARELGI-PIKFIG--VGEKAED 290 (306)
T ss_dssp CGGGCSCT----THHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred CCCCccch----HHHHHHHHHHCC-CEEEEe--CCCChhh
Confidence 99965432 224444555665 666665 3555544
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0016 Score=66.28 Aligned_cols=147 Identities=13% Similarity=0.184 Sum_probs=75.6
Q ss_pred CEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCce------ee-----eeEEEEe------------------
Q 007334 121 PTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDHV------TR-----DIREGLA------------------ 165 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~~------T~-----~~~~~~~------------------ 165 (607)
..|+++|.+|+||||++..|.+ .+...+...+.... +. ......+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIK 185 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHH
Confidence 4799999999999999998864 22222221111000 00 0001111
Q ss_pred --eeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh-----hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-E
Q 007334 166 --KLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL-----AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-P 237 (607)
Q Consensus 166 --~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~-----~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ 237 (607)
...++.+.|+||||..... +....+. ......+ ..+|.+++|+|+..+ .... +.++......+ .
T Consensus 186 ~~~~~~yD~VIIDTpg~l~~~--~~l~~eL-~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l---~~~~~~~~~~~i~ 257 (320)
T 1zu4_A 186 KAKEQNYDLLLIDTAGRLQNK--TNLMAEL-EKMNKIIQQVEKSAPHEVLLVIDATTG--QNGV---IQAEEFSKVADVS 257 (320)
T ss_dssp HHHHTTCSEEEEECCCCGGGH--HHHHHHH-HHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHH---HHHHHHTTTSCCC
T ss_pred HHHhcCCCEEEEcCCCccccc--HHHHHHH-HHHHHHHhcccCCCCceEEEEEECCCc--HHHH---HHHHHHhhcCCCc
Confidence 0135689999999987321 1111111 1111222 247899999999843 2222 22233322233 3
Q ss_pred EEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 238 IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 238 ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
=+|+||+|..... ..........+. ++.++. .|+++++
T Consensus 258 GvVltk~d~~~~~----g~~~~~~~~~~~-Pi~~i~--~Ge~~~d 295 (320)
T 1zu4_A 258 GIILTKMDSTSKG----GIGLAIKELLNI-PIKMIG--VGEKVDD 295 (320)
T ss_dssp EEEEECGGGCSCT----THHHHHHHHHCC-CEEEEE--CSSSTTC
T ss_pred EEEEeCCCCCCch----hHHHHHHHHHCc-CEEEEe--CCCCccc
Confidence 4789999965431 223334445565 555554 5666644
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.002 Score=68.01 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=75.9
Q ss_pred CEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCcee------------eeeEEEE------------e---ee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDHVT------------RDIREGL------------A---KL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~~T------------~~~~~~~------------~---~~ 167 (607)
..|+++|.+|+||||++..|.+ .+...+...+..... .+..... + ..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~ 178 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999998873 222222211110000 0111000 0 01
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
.+..+.|+||||..... .....+.. . ...+-.+|.+++|+|+..+... ....+.+.+. -...-+|+||+|..
T Consensus 179 ~~~DvVIIDTaG~l~~d--~~l~~el~-~-i~~~~~pd~vlLVvDa~tgq~a--v~~a~~f~~~--l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID--EPLMGELA-R-LKEVLGPDEVLLVLDAMTGQEA--LSVARAFDEK--VGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCC--HHHHHHHH-H-HHHHHCCSEEEEEEEGGGTTHH--HHHHHHHHHH--TCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCccccc--HHHHHHHH-H-hhhccCCceEEEEEeccchHHH--HHHHHHHHhc--CCceEEEEeCcCCc
Confidence 45679999999976321 11111111 1 1223368899999999754211 2233333322 11356789999975
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 248 HNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
... ..........+. ++.++. .|+.+++
T Consensus 251 ~~~----g~alsi~~~~g~-PI~flg--~Ge~~~d 278 (425)
T 2ffh_A 251 ARG----GAALSARHVTGK-PIYFAG--VSEKPEG 278 (425)
T ss_dssp SSC----HHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred ccH----HHHHHHHHHHCC-CEEEEe--CCCChhh
Confidence 421 223333445565 555555 4555543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.29 E-value=8.4e-05 Score=75.22 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=51.4
Q ss_pred HHhhccEEEEEeccchh------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 402 NLMRAHVVALVLDAEEV------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
.+.++|.+++|+|+..+ .....++|.+||+||+||.+.....+..+.+.+.+ .. .+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y----~~-----~g~~v 153 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY----RN-----IGYDV 153 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH----HH-----HTCCE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHH----Hh-----CCCeE
Confidence 56789999999999865 11236899999999999987521001112221111 11 14689
Q ss_pred EEcccCCCCCHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQ 486 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~ 486 (607)
+++||++|.|+++|+..
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999998877653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.29 E-value=5.3e-05 Score=71.50 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=66.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc-cCcc-------h--
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE-KGPA-------S-- 393 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~-------~-- 393 (607)
--|+|+|++|||||||+++|++... ......+.||+.+..+. .+|..+.++|.+.+...... ...+ .
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YG 97 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFG 97 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhhhhhhhhhhhhhhceecc
Confidence 4589999999999999999997643 35566778888776543 57788888888765433110 0011 0
Q ss_pred hHHHHHHHHHhhccEEEEEeccchhhHHhc--CCcEEEEEe
Q 007334 394 LSVMQSRKNLMRAHVVALVLDAEEVRAVEE--GRGLVVIVN 432 (607)
Q Consensus 394 ~~~~~~~~~i~~ad~~llViD~~~~~~~~~--~~p~ivv~N 432 (607)
.+.......+.....+|+-+|......... ..|++|.+.
T Consensus 98 t~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~ 138 (197)
T 3ney_A 98 TKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138 (197)
T ss_dssp EEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEE
T ss_pred cchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEe
Confidence 112233456667778888888765433322 235555444
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00019 Score=67.76 Aligned_cols=57 Identities=25% Similarity=0.445 Sum_probs=40.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccce-eeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRRE-ALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~-~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~ 181 (607)
..|+|+|.+|||||||+++|++... ......+. +||....+. .+|..+.++|+..+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~--TTR~p~~gE--~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPY--TTRPPRKSE--EDGKEYHFISTEEMT 77 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE--ECSCCCTTC--CTTSSCEECCHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecc--cccCCcCCe--eccccceeccHHHhh
Confidence 4799999999999999999997643 23444444 787765543 466777777776654
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00025 Score=71.74 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++++|++||||||+++.|.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 44689999999999999999874
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0047 Score=62.12 Aligned_cols=145 Identities=15% Similarity=0.116 Sum_probs=71.7
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCcee------------eeeEEE---------------Eeee
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHVT------------RDIREG---------------LAKL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~T------------~~~~~~---------------~~~~ 167 (607)
..++++|.+|+||||++..|.+. +...+...+..... .+.... ....
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~ 178 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999988742 22222111110000 001100 0001
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
.+..+.|+||||...... ....+.. ..... -.+|.+++|+|+..+ .......+.+... -...-+|+||+|..
T Consensus 179 ~~~D~viiDtpp~~~~d~--~~~~~l~-~~~~~-~~~~~~~lv~~~~~~--~~~~~~~~~~~~~--~~i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDE--PLMGELA-RLKEV-LGPDEVLLVLDAMTG--QEALSVARAFDEK--VGVTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSCCH--HHHHHHH-HHHHH-HCCSEEEEEEEGGGT--HHHHHHHHHHHHH--TCCCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccccH--HHHHHHH-HHhhh-cCCCEEEEEEeCCCc--HHHHHHHHHHhhc--CCCCEEEEECCCCC
Confidence 456899999998763211 1111111 11122 257888999998743 2222222323221 12345789999975
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 248 HNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
.. ...........+. ++.+++ .|+++
T Consensus 251 ~~----~g~~~~~~~~~~~-pi~~i~--~g~~~ 276 (295)
T 1ls1_A 251 AR----GGAALSARHVTGK-PIYFAG--VSEKP 276 (295)
T ss_dssp SS----CHHHHHHHHHHCC-CEEEEC-------
T ss_pred cc----HHHHHHHHHHHCc-CEEEEe--CCCCc
Confidence 42 1233344455565 555554 45544
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0013 Score=61.91 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=69.1
Q ss_pred CEEEEe-cCCCCchhHHHHHhh------ccceeeeccCCCCceeeee-----EEEEee-------------eCCeeEEEe
Q 007334 121 PTVMII-GRPNVGKSALFNRLI------RRREALVYNTPDDHVTRDI-----REGLAK-------------LGDLRFKVL 175 (607)
Q Consensus 121 ~~V~iv-G~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~T~~~-----~~~~~~-------------~~~~~~~li 175 (607)
+.|++. +..|+||||+.-.|. |.+...+.-.+....+.-. ....+. ...+.+.|+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vii 81 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIV 81 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEE
Confidence 357777 678999999976664 3344433322221111100 000011 134689999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCccc
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCESLH 248 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~~~ 248 (607)
|||+... ..+...+..+|.+++++..+... ..-..+.+.+++. .++.++.+|+|++|...
T Consensus 82 D~~~~~~------------~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 82 DGAGSLS------------VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp ECCSSSS------------HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred ECCCCCC------------HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 9998761 12334567799999999987655 4444566777654 23467799999999543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0067 Score=62.58 Aligned_cols=149 Identities=14% Similarity=0.147 Sum_probs=75.8
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce------e----eeeEEEEee------------------
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV------T----RDIREGLAK------------------ 166 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~------T----~~~~~~~~~------------------ 166 (607)
-.|+|||.+|||||||++.|.+. +..+......... + ....+....
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 237 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence 47999999999999999999863 2222111110000 0 001000000
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHH----HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMT----ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~----~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
..+....++||.|...... ....+...+. .......+-+++|+|++.+..... ....+.+.. + ..+++++
T Consensus 238 ~~~~d~~lldt~Gl~~~~~--~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~-g-~t~iiiT 311 (359)
T 2og2_A 238 EEGYDVVLCDTSGRLHTNY--SLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-G-ITGLILT 311 (359)
T ss_dssp HTTCSEEEEECCCCSSCCH--HHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-C-CCEEEEE
T ss_pred hCCCHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhc-C-CeEEEEe
Confidence 0133568999999864321 1111111111 112345677899999765544333 223333321 2 3577889
Q ss_pred CCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 243 K~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.|.... ...........+. ++.++. .|+.+++
T Consensus 312 hlD~~~~----gG~~lsi~~~~~~-pI~~ig--~Ge~~~D 344 (359)
T 2og2_A 312 KLDGSAR----GGCVVSVVEELGI-PVKFIG--VGEAVED 344 (359)
T ss_dssp SCTTCSC----THHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred cCccccc----ccHHHHHHHHhCC-CEEEEe--CCCChHh
Confidence 9886532 2334445555565 555554 4555544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0013 Score=66.51 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++++|.+|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34688999999999999998864
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0099 Score=59.88 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=75.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc------ceeeeccCCCCce------e----eeeEEE----E-e-------------e
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR------REALVYNTPDDHV------T----RDIREG----L-A-------------K 166 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~------~~~~v~~~~~~~~------T----~~~~~~----~-~-------------~ 166 (607)
-.++|+|.+|||||||++.|.+. +..+......... + ....+. . . .
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence 47999999999999999999863 2222211110000 0 000000 0 0 0
Q ss_pred eCCeeEEEecCCCCccccCchhHHHHHHHHHHH----HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEec
Q 007334 167 LGDLRFKVLDSAGLETEATSGSILDRTAGMTAN----VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242 (607)
Q Consensus 167 ~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~----~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~N 242 (607)
..+....++||.|..... +....+...+... .....+-+++|+|++.+..... ....+.+.. + ..+++++
T Consensus 181 ~~~~d~~lldt~gl~~~~--~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~-g-~t~iiiT 254 (302)
T 3b9q_A 181 EEGYDVVLCDTSGRLHTN--YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVV-G-ITGLILT 254 (302)
T ss_dssp HTTCSEEEECCCCCSSCC--HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHT-C-CCEEEEE
T ss_pred HcCCcchHHhcCCCCcch--hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhc-C-CCEEEEe
Confidence 123356889999986322 1111122111111 1235677889999766554443 233333221 2 3567789
Q ss_pred CCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 243 K~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
|.|.... ...........+. ++..+. +|+.+++
T Consensus 255 hlD~~~~----~g~~l~~~~~~~~-pi~~i~--~Ge~~~d 287 (302)
T 3b9q_A 255 KLDGSAR----GGCVVSVVEELGI-PVKFIG--VGEAVED 287 (302)
T ss_dssp CCSSCSC----THHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred CCCCCCc----cChheehHHHHCC-CEEEEe--CCCChhh
Confidence 9886532 2344445555555 555554 4554543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0015 Score=66.54 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999988863
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=96.69 E-value=0.002 Score=66.45 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=47.1
Q ss_pred HhhccEEEEEeccchh------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 403 LMRAHVVALVLDAEEV------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 403 i~~ad~~llViD~~~~------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
+.++|.+++| |+..+ .....++|.+||+||+||.+... ....+.+. .... ..+.+++
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~-~~~~~~~~----~~y~-----~~G~~v~ 196 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEG-MDFVNEQM----DIYR-----NIGYRVL 196 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHH-HHHHHHHH----HHHH-----TTTCCEE
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchh-HHHHHHHH----HHHH-----hCCCcEE
Confidence 4578999876 55444 11246899999999999986521 00011111 1111 2366899
Q ss_pred EcccCCCCCHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQ 486 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~ 486 (607)
++||++|.|++++...
T Consensus 197 ~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEA 212 (358)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred EEecCCCcCHHHHHHh
Confidence 9999999999888764
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0045 Score=66.24 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++|+|.+|+|||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45689999999999999999875
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00085 Score=70.88 Aligned_cols=66 Identities=33% Similarity=0.405 Sum_probs=38.4
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCCc-EEEEEeCccCCCC
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRG-LVVIVNKMDLLSG 439 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p-~ivv~NK~Dl~~~ 439 (607)
.+..+.|+||||..... ...............+|.+++|+|++.+ ..+....+ .-+|+||+|....
T Consensus 179 ~~~DvVIIDTaG~l~~d----~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f~~~l~i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 179 EARDLILVDTAGRLQID----EPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDAR 252 (425)
T ss_dssp TTCSEEEEECCCCSSCC----HHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHTCCCEEEEESGGGCSS
T ss_pred CCCCEEEEcCCCccccc----HHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHHHhcCCceEEEEeCcCCccc
Confidence 35578999999954221 0111111122223368999999999865 12222333 5678999997543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0033 Score=63.30 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.++++|.+|+||||++..|.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998863
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=61.39 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.2
Q ss_pred CCCEEEEecCCCCchhHHHHHhh
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLI 141 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~ 141 (607)
....|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 45789999999999999999665
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0021 Score=61.16 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=65.0
Q ss_pred EEEEe-cCCCCchhHHHHHhh------ccceeeeccCCCCceee---------eeEEE-Ee--eeCCeeEEEecCCCC-c
Q 007334 122 TVMII-GRPNVGKSALFNRLI------RRREALVYNTPDDHVTR---------DIREG-LA--KLGDLRFKVLDSAGL-E 181 (607)
Q Consensus 122 ~V~iv-G~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~T~---------~~~~~-~~--~~~~~~~~liDTpG~-~ 181 (607)
.|+++ +..||||||+.-.|. | +...+.-.+....+. +.... .+ -...+.+.++|||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 46665 789999999977664 3 443333222211111 00000 00 013467999999987 4
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
.. .+...+..+|.+|+++..+...-..-..+.+++++.. +.++.+|+|++|...
T Consensus 81 ~~------------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 81 DE------------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLG-NNRFRILLTIIPPYP 134 (209)
T ss_dssp SS------------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTT
T ss_pred cH------------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhcc-CCCEEEEEEecCCcc
Confidence 11 1234567899999999865321111133556666532 567889999998653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0022 Score=64.46 Aligned_cols=66 Identities=33% Similarity=0.405 Sum_probs=37.0
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHHhcCCc-EEEEEeCccCCCC
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAVEEGRG-LVVIVNKMDLLSG 439 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~~~~~p-~ivv~NK~Dl~~~ 439 (607)
.+..+.|+||||..... ...+...........+|.+++|+|+... .......+ .-+|+||+|....
T Consensus 179 ~~~D~viiDtpp~~~~d----~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~~~~~i~givlnk~d~~~~ 252 (295)
T 1ls1_A 179 EARDLILVDTAGRLQID----EPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDAR 252 (295)
T ss_dssp HTCCEEEEECCCCSSCC----HHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGGGCSS
T ss_pred CCCCEEEEeCCCCcccc----HHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHHhhcCCCCEEEEECCCCCcc
Confidence 45689999999853210 0111111111122258999999998754 11222233 5578999997543
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0009 Score=72.05 Aligned_cols=117 Identities=13% Similarity=0.103 Sum_probs=60.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEe--ee--CCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLA--KL--GDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~--~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
...|+++|.||+||||+.++|...-. ..+. -|........ .. ......+||+.|................
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~-----~~~~-~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN-----FIGV-PTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALN 112 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH-----HTTC-CEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh-----ccCC-CceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 35799999999999999999976421 1110 1111110000 00 1123456788775310000000001122
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhCCCCcEEEEecCCC
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCE 245 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~D 245 (607)
....++..+++.++|+|+++. +... ..+.+.+++. ..+++.+--.|+
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~--~~~vv~l~~~~~ 160 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN--GYKTFFVESICV 160 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH--TCEEEEEEECCC
T ss_pred HHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc--CCcEEEEEEECC
Confidence 224566667888999999886 3333 3345556554 445555543343
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0042 Score=57.44 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..++|+|.+|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999875
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0062 Score=61.40 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=58.8
Q ss_pred CCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCC
Q 007334 234 QIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDV 313 (607)
Q Consensus 234 ~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~ 313 (607)
..+..+|++|.|... +.....+...+. +++.+++.+..++..|..+|...+.... .++..+
T Consensus 79 ~~~P~IIltrg~~~p------eelie~A~~~~I-PVL~T~~~ts~~~~~l~~~l~~~~~~~~--~~H~~~---------- 139 (314)
T 1ko7_A 79 PETPAIIVTRDLEPP------EELIEAAKEHET-PLITSKIATTQLMSRLTTFLEHELARTT--SLHGVL---------- 139 (314)
T ss_dssp TTCCCEEECTTCCCC------HHHHHHHHHTTC-CEEECCSCHHHHHHHHHHHHHHHTCEEE--EEESEE----------
T ss_pred CCCCEEEEeCCCCCC------HHHHHHHHHCCC-eEEEECCchhHHHHHHHHHHHHhhccce--eeeEEE----------
Confidence 344556678888764 334555566677 7888888888888888777665443210 000000
Q ss_pred CCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCc
Q 007334 314 TSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDR 349 (607)
Q Consensus 314 ~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~ 349 (607)
-.-...-|+++|++|+||||+...|.....
T Consensus 140 ------v~~~g~~vl~~G~sG~GKSt~a~~l~~~g~ 169 (314)
T 1ko7_A 140 ------VDVYGVGVLITGDSGIGKSETALELIKRGH 169 (314)
T ss_dssp ------EEETTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred ------EEECCEEEEEEeCCCCCHHHHHHHHHhcCC
Confidence 001234699999999999999999997643
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.32 Score=55.31 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..-|.|.|.||+|||+|.+++.+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0031 Score=58.30 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=26.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSV 363 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~ 363 (607)
.++|+|++|||||||++.|.+... ........+|+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~ 45 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK 45 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence 589999999999999999987532 12233444555543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0069 Score=56.01 Aligned_cols=23 Identities=35% Similarity=0.808 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHhhccc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRR 144 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~ 144 (607)
+++|+|.+|+|||||++.|++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998753
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0041 Score=57.97 Aligned_cols=39 Identities=28% Similarity=0.519 Sum_probs=27.5
Q ss_pred EEEecCCCCchhHHHHHhhccce-eeeccCCCCceeeeeEEE
Q 007334 123 VMIIGRPNVGKSALFNRLIRRRE-ALVYNTPDDHVTRDIREG 163 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~~~-~~v~~~~~~~~T~~~~~~ 163 (607)
|+|+|++|||||||+++|+.... .+....+. |||....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~--TTR~pR~g 43 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSS--TTRTPRAG 43 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCE--ECSCCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEE--eccCCCCC
Confidence 88999999999999999986532 12222333 77765443
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0074 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.9
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..++|+|.+|||||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999874
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0024 Score=59.59 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=34.8
Q ss_pred EEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeEEEEEEEcCeEEEEEec
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQGRTVYLVDT 379 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~~~~~~~~~~~~~liDT 379 (607)
|+|+|++|||||||+++|+.... ......+.|||.+..+ +.+|..|.+++-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~g--E~~G~dY~Fvs~ 55 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG--EVNGKDYNFVSV 55 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTT--CCBTTTBEECCH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCC--CcCCceeEeecH
Confidence 78999999999999999986532 2334566677765433 235555665543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.011 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.545 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+.+.++|+|.+|+|||||+++|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999874
|
| >3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.0088 Score=57.90 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=40.5
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhCCCCcEEEEecCCC
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIVAMNKCE 245 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~D 245 (607)
..+.+.|+|||+.... .+...+..+|.+++|++.+.. +... ..+.+++.+.. -..+.+|+|+++
T Consensus 130 ~~yD~viiD~pp~~~~------------~~~~~l~~aD~viiv~~~~~~-s~~~~~~~~~~~~~~~-~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH------------LTRGTAKAVDMMIAVIEPNLN-SIKTGLNIEKLAGDLG-IKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTT------------CCHHHHTTCSEEEEEECSSHH-HHHHHHHHHHHHHHHT-CSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccH------------HHHHHHHHCCEEEEecCCCHH-HHHHHHHHHHHHHHcC-CccEEEEEeCCC
Confidence 4567999999876522 123456789999999986532 1121 23445555552 245779999998
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.797 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
+++++|++|+|||||++.++|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=55.66 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRR 144 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~ 144 (607)
-.++|+|.+|+|||||++.|.|--
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 369999999999999999998853
|
| >1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.079 Score=58.50 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=17.5
Q ss_pred CCEEEEecCCCCchhHHHHHhh
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI 141 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~ 141 (607)
...+.+-|.+|+||||+--.|.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA 29 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATA 29 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHH
Confidence 3467888999999999976654
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.0079 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
...|+|+|.+|+|||||++.|++.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=54.52 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..++|+|.+|+|||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46999999999999999999875
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.014 Score=55.77 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|.+|+|||||++.|++.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999884
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.015 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+|+|.+|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999875
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.015 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+|+|.+|+|||||++.|.+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.017 Score=55.27 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRR 144 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~ 144 (607)
..++|+|.+|||||||++.|++..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999999854
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.018 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|..|+|||||++.|.|-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 607 | ||||
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 6e-19 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 1e-15 | |
| d1mkya3 | 81 | d.52.5.1 (A:359-439) Probable GTPase Der, C-termin | 3e-17 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 5e-17 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 2e-14 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 3e-16 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 2e-15 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 3e-16 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 2e-14 | |
| d1puja_ | 273 | c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti | 3e-15 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 3e-14 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 1e-12 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 6e-14 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 6e-09 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 9e-14 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 1e-13 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 4e-13 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 5e-11 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 6e-13 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 7e-12 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 6e-13 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 1e-11 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 8e-13 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 1e-07 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 8e-11 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 1e-10 | |
| d1bifa1 | 213 | c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct | 2e-10 | |
| d1bifa1 | 213 | c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct | 1e-05 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 2e-10 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 3e-06 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 3e-10 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 6e-10 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 9e-09 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 1e-08 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 2e-08 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 7e-04 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 6e-08 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 7e-06 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 8e-08 | |
| d1g7sa4 | 227 | c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N- | 1e-04 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 2e-07 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 0.001 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 2e-07 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 3e-04 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 3e-07 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 4e-06 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 5e-07 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 2e-05 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 6e-07 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 2e-06 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 1e-06 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 7e-04 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 2e-06 | |
| d1wb1a4 | 179 | c.37.1.8 (A:1-179) Elongation factor SelB, N-termi | 2e-04 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 3e-06 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 1e-04 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 4e-06 | |
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 5e-04 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 5e-06 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 5e-06 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 6e-06 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 9e-05 | |
| d1wxqa1 | 319 | c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr | 6e-06 | |
| d1wxqa1 | 319 | c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr | 6e-04 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 7e-06 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 6e-05 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 7e-06 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-05 | |
| d1n0ua2 | 341 | c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N- | 8e-06 | |
| d2c78a3 | 204 | c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N | 9e-06 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 1e-05 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 1e-05 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 3e-05 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 2e-05 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 2e-05 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 0.001 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 2e-05 | |
| d1ni3a1 | 296 | c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter | 3e-05 | |
| d1ni3a1 | 296 | c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter | 9e-05 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 3e-05 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 4e-05 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 0.001 | |
| d1f60a3 | 239 | c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N | 6e-05 | |
| d1jala1 | 278 | c.37.1.8 (A:1-278) YchF GTP-binding protein N-term | 6e-05 | |
| d1jala1 | 278 | c.37.1.8 (A:1-278) YchF GTP-binding protein N-term | 0.004 | |
| d1d2ea3 | 196 | c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), | 1e-04 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 2e-04 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 0.002 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 4e-04 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 0.004 | |
| d1kk1a3 | 195 | c.37.1.8 (A:6-200) Initiation factor eIF2 gamma su | 6e-04 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 6e-04 | |
| d1r5ba3 | 245 | c.37.1.8 (A:215-459) Eukaryotic peptide chain rele | 6e-04 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 7e-04 | |
| d2akab1 | 299 | c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n | 9e-04 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 0.001 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 0.002 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 0.002 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 0.002 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 0.004 | |
| d1zunb3 | 222 | c.37.1.8 (B:16-237) Sulfate adenylate transferase | 0.002 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 0.003 | |
| d2gjsa1 | 168 | c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax | 0.003 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 0.003 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 0.004 | |
| d2qn6a3 | 205 | c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su | 0.004 |
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 81.9 bits (201), Expect = 6e-19
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L++ IVG+PNVGKSTLLN LL EDR +V G TRD + +G +VDTAG ++
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAG-VR 59
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSA 444
E L + ++ + + +A +V VLDA E+ + L I NK L+ +
Sbjct: 60 SETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDV 119
Query: 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ K +E + ++ T +V SAL+G G
Sbjct: 120 VEKINEEEIKNKLG------TDRHMVKISALKGEG 148
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 72.3 bits (176), Expect = 1e-15
Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 11/165 (6%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++I+G+PNVGKS L NRL+ A+V + P RD+ + + F+++D+AG+ +
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT--RDVISEEIVIRGILFRIVDTAGVRS 60
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
E T+ + T + K +F++D S L D ++ + ++ +
Sbjct: 61 E-TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDV 119
Query: 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
+ ++ + + ISA G G+ +L E++
Sbjct: 120 VEKINEE--------EIKNKLGTDRHMVKISALKGEGLEKLEESI 156
|
| >d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 81 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Probable GTPase Der, C-terminal domain family: Probable GTPase Der, C-terminal domain domain: Probable GTPase Der, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Score = 74.4 bits (183), Expect = 3e-17
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 497 RLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFL 556
++P+S +N L+KV+ + KI + QV +PPTF+ F++ + + + + FL
Sbjct: 1 KVPSSAINSALQKVLAFTN---LPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFL 57
Query: 557 TKSLKED-FDLGGIPIRITQRS 577
K +++ F G PI + +
Sbjct: 58 RKLIRDYVFPFEGSPIFLKFKR 79
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 77.4 bits (189), Expect = 5e-17
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY 375
PE ++ +++AIVGRPNVGKSTL NA+L ++R LV P G TRD V GR
Sbjct: 3 PEITDA---IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV 59
Query: 376 LVDTAGWLQREK--EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNK 433
VDTAG ++ + + S + ++ +A VV +VLDA + ++ R ++ +
Sbjct: 60 FVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR 119
Query: 434 MDLLSGRQNSALYKRVKEAVP----QEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
N +E + + + + P++FTSA +G ++ +
Sbjct: 120 GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 179
Query: 490 TYQKW 494
Y +
Sbjct: 180 AYASY 184
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 70.1 bits (170), Expect = 2e-14
Identities = 34/186 (18%), Positives = 67/186 (36%), Gaps = 6/186 (3%)
Query: 113 TKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRF 172
+K +I V I+GRPNVGKS LFN ++ + ALV P E ++
Sbjct: 1 SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID--GRKY 58
Query: 173 KVLDSAGLETE--ATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK 230
+D+AGL + ++ + + + K + ++D G+ D + + +
Sbjct: 59 VFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER 118
Query: 231 HAPQIKPIVAM--NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
+ + + + I SA+ G + + +A+
Sbjct: 119 RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMN 178
Query: 289 PSVEDY 294
+ Y
Sbjct: 179 LAYASY 184
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 74.8 bits (182), Expect = 3e-16
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 6/168 (3%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
+ I+GRPNVGKS L N+L+ ++ ++ TR G+ G + +D+ GL
Sbjct: 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKA--QTTRHRIVGIHTEGAYQAIYVDTPGL 63
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
E I ++ + + IF+++ ++ + K AP I +
Sbjct: 64 HMEEKRA-INRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNK 122
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
++ + + + + F D + ISAETGL + + +R
Sbjct: 123 VDNVQEKADLLPH---LQFLASQMNFLDIVPISAETGLNVDTIAAIVR 167
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 72.4 bits (176), Expect = 2e-15
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 2/152 (1%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
AIVGRPNVGKSTLLN LL + + +A TR + VDT G E+
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL-HMEE 67
Query: 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSALYK 447
++ L + ++ +V V++ +E + K ++ +
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127
Query: 448 RVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
K + +Q + Q+ + +V SA G
Sbjct: 128 E-KADLLPHLQFLASQMNFLDIVPISAETGLN 158
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 74.7 bits (182), Expect = 3e-16
Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 5/164 (3%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
+VG PN GKS+LL A+ + + ++ V + L D G ++
Sbjct: 5 GLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 64
Query: 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSALYK 447
E ++ +++ R V+ VLDA + + L R +
Sbjct: 65 E---GKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALN 121
Query: 448 RVKEAVPQEIQTVIPQV--TGIPVVFTSALEGRGRIAVMHQVID 489
+V + ++ + + G+ V+ SAL G G A+ +
Sbjct: 122 KVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHA 165
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 69.7 bits (169), Expect = 2e-14
Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 5/174 (2%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
+ V ++G PN GKS+L + R + + + RF + D G
Sbjct: 1 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTT--LSPNLGVVEVSEEERFTLADIPG 58
Query: 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV 239
+ A+ G L + + D + + +V
Sbjct: 59 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLV 118
Query: 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293
A+NK + L A A++L + +SA TG G+ L EAL V
Sbjct: 119 ALNKVDLLEEEA---VKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 169
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Score = 74.1 bits (181), Expect = 3e-15
Identities = 36/182 (19%), Positives = 70/182 (38%), Gaps = 29/182 (15%)
Query: 208 IFMIDVRSGLHPLDLEVGKWLRKHAPQIKP-IVAMNKCESLHNGTGSLAGAAAESLMLGF 266
++D R + + + L+ KP I+ +NK + ++ E
Sbjct: 20 YELVDARIPMSSRNPMIEDILKN-----KPRIMLLNKAD---KADAAVTQQWKEHFENQG 71
Query: 267 GDPIAISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQ 326
++I++ G G+ ++ A + +++ ++
Sbjct: 72 IRSLSINSVNGQGLNQIVPASKEILQEKF-----------------DRMRAKGVKPRAIR 114
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386
I+G PNVGKSTL+N L +++ G G+T V G+ + L+DT G L +
Sbjct: 115 ALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWPK 171
Query: 387 KE 388
E
Sbjct: 172 FE 173
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 69.2 bits (168), Expect = 3e-14
Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 3/165 (1%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ--- 384
+VG P+VGKSTLL+ + + ++ + GR+ + D G ++
Sbjct: 5 GLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSA 444
+ G L ++ + ++ ++ + + + N + A
Sbjct: 65 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124
Query: 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
+ EA PV SA+ G ++ +V +
Sbjct: 125 NKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 169
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 64.6 bits (156), Expect = 1e-12
Identities = 33/178 (18%), Positives = 57/178 (32%), Gaps = 9/178 (5%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLR-FKVLDSA 178
L V ++G P+VGKS L + + + + T G+ + D R F + D
Sbjct: 1 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFT---TLVPNLGMVETDDGRSFVMADLP 57
Query: 179 GLETEATSGSILDRTAG---MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQI 235
GL A G L V+ + L +
Sbjct: 58 GLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTE 117
Query: 236 KPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVED 293
+P + + + +L A + + ISA T G+ EL + +E+
Sbjct: 118 RPQIIVANKMDMPEAAENL--EAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 173
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.7 bits (175), Expect = 6e-14
Identities = 26/192 (13%), Positives = 58/192 (30%), Gaps = 13/192 (6%)
Query: 284 YEALRPSVEDYMLRVLNDSCTQNN--SSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLL 341
+ R + +L ++ N + ++ + L +A+ G GKS+ +
Sbjct: 14 FNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI 73
Query: 342 NALL----QEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVM 397
N L +E+ +T + V D G + L M
Sbjct: 74 NTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPG-IGSTNFPPDTYLEKM 131
Query: 398 QSRKNLMRAHVVALVLDAEEVRAVEE----GRGLVVIVNKMD-LLSGRQNSALYKRVKEA 452
+ + + A ++ + + + K+D ++ + KE
Sbjct: 132 KFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEK 191
Query: 453 VPQEIQTVIPQV 464
V Q+I+
Sbjct: 192 VLQDIRLNCVNT 203
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.9 bits (134), Expect = 6e-09
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 12/127 (9%)
Query: 123 VMIIGRPNVGKSALFNRL--IRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
V + G GKS+ N L I E T VT + D G+
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP-NVVFWDLPGI 117
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
+ + + F I + R D+++ K + + +
Sbjct: 118 GSTNFPPD-----TYLEKMKFYEYDFFIIISATR--FKKNDIDIAKAISMM--KKEFYFV 168
Query: 241 MNKCESL 247
K +S
Sbjct: 169 RTKVDSD 175
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 67.1 bits (162), Expect = 9e-14
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 11/167 (6%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
V+I GRPN GKS+L N L R A+V + RD+ + + ++D+A
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTT--RDVLREHIHIDGMPLHIIDTA--G 58
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
S + + + +FM+D + E+ P PI +
Sbjct: 59 LREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVV 118
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
+ T ++ + I +SA TG G+ L L+
Sbjct: 119 RNKADITGETLGMS-------EVNGHALIRLSARTGEGVDVLRNHLK 158
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 66.7 bits (161), Expect = 1e-13
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++ I GRPN GKS+LLNAL + +V AG TRD +R H G ++++DTAG +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSA 444
E + + ++ + + +A V ++D AV+ + + L +
Sbjct: 62 ASDE--VERIGIERAWQEIEQADRVLFMVDGTTTDAVDP---AEIWPEFIARLPAKLPIT 116
Query: 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ + + + + + +V G ++ SA G G
Sbjct: 117 VVRNKADITGETLG--MSEVNGHALIRLSARTGEG 149
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 65.9 bits (159), Expect = 4e-13
Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 16/185 (8%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIR------------EGLAKLGD 169
T++ GR NVGKS L RL ++ P VTR I G +
Sbjct: 2 TIIFAGRSNVGKSTLIYRLTGKK-VRRGKRP--GVTRKIIEIEWKNHKIIDMPGFGFMMG 58
Query: 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLR 229
L +V + E V K I + G P+D+E ++LR
Sbjct: 59 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR 118
Query: 230 KHA-PQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
+ P I + ++K +++ LA L I ISA+ G + L +
Sbjct: 119 ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178
Query: 289 PSVED 293
+ +
Sbjct: 179 EVIRE 183
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 59.7 bits (143), Expect = 5e-11
Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 30/184 (16%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYL-VDTAGWLQRE 386
GR NVGKSTL+ L + +V G G+TR + + ++ L +E
Sbjct: 4 IFAGRSNVGKSTLIYRLTGK-KVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------------------RAVEEGR 425
++ V N V LV+D + E
Sbjct: 63 VQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 122
Query: 426 GLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMH 485
+V VNK+D + Q V + ++ + + ++ + SA G + +
Sbjct: 123 PTIVAVNKLDKIKNVQ------EVINFLAEKFEVPLSEI-DKVFIPISAKFGDNIERLKN 175
Query: 486 QVID 489
++ +
Sbjct: 176 RIFE 179
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 65.1 bits (157), Expect = 6e-13
Identities = 35/167 (20%), Positives = 66/167 (39%), Gaps = 7/167 (4%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
V I+G+PNVGKS L N L+ + A + P R L + R +++
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLR----GILTEGRRQIVFVDTP 61
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
++ + LA ++++D+R P D V + L+ ++ ++
Sbjct: 62 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 121
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
NK ++ ++ A +L +P +SA + EL L
Sbjct: 122 GNKLDAAKYPEEAM---KAYHELLPEAEPRMLSALDERQVAELKADL 165
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 62.1 bits (149), Expect = 7e-12
Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 3/162 (1%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
AIVG+PNVGKSTLLN LL + P TR +R R + VDT G +
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 68
Query: 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSALYK 447
G + + L + V V+D E+ + + +
Sbjct: 69 ALGEF--MDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLD 126
Query: 448 RVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
K + ++ + SAL+ R + ++
Sbjct: 127 AAKYP-EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLA 167
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 65.2 bits (157), Expect = 6e-13
Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 12/168 (7%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
TV+I+GRPNVGKS LFN+L+++++A+V + G+ + +
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEE----------GVTRDPVQDTVEWYGKTFK 51
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAM 241
T G + ++ + T I D+ + + K A ++
Sbjct: 52 LVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVD 111
Query: 242 NKCESLH--NGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
+ N E LGFG+PI +SAE + + + E +
Sbjct: 112 TILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETI 159
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 61.7 bits (148), Expect = 1e-11
Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 4/162 (2%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
IVGRPNVGKSTL N L+++ + +V E G+TRD V+ E+ G+T LVDT G +
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ 63
Query: 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSALYK 447
+ L LVL + + + A
Sbjct: 64 DIIS----QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKA 119
Query: 448 RVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
+E++ + + + SA ++ +I
Sbjct: 120 ENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIK 161
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 66.8 bits (162), Expect = 8e-13
Identities = 26/188 (13%), Positives = 59/188 (31%), Gaps = 17/188 (9%)
Query: 299 LNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGL 358
+N + ++ E L + ++G+ VGKS+ +N+++ E V + P
Sbjct: 7 INTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSE 66
Query: 359 TRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVL----- 413
V V G T+ ++DT G ++ A + + ++ +
Sbjct: 67 GPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR 126
Query: 414 ----DAEEVRAVEEGRG------LVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463
D +A+ + G +V + Y + + V+
Sbjct: 127 VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP--YDEFFSKRSEALLQVVRS 184
Query: 464 VTGIPVVF 471
+
Sbjct: 185 GASLKKDA 192
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 51.0 bits (121), Expect = 1e-07
Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 11/132 (8%)
Query: 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
T++++G+ VGKS+ N +I R + ++D+ GL
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGERVVSISPFQ--SEGPRPVMVSRSRAGFTLNIIDTPGLI 91
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP---- 237
G I D + + L + + R + +D +
Sbjct: 92 ---EGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 148
Query: 238 --IVAMNKCESL 247
IVA+ +
Sbjct: 149 KAIVALTHAQFS 160
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 59.4 bits (142), Expect = 8e-11
Identities = 30/180 (16%), Positives = 66/180 (36%), Gaps = 9/180 (5%)
Query: 316 PEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY 375
P D +++A GR N GKS+ LN L + + + + + G+ +
Sbjct: 12 PSDT----GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 67
Query: 376 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGR---GLVVIVN 432
+ G+ + +E + ++ +VL + + V N
Sbjct: 68 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSN 127
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG-IPVVFTSALEGRGRIAVMHQVIDTY 491
L+ + L ++A ++ + G + V S+L+ +G + + Q +DT+
Sbjct: 128 IAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQG-VDKLRQKLDTW 186
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 59.0 bits (141), Expect = 1e-10
Identities = 24/171 (14%), Positives = 43/171 (25%), Gaps = 8/171 (4%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
V GR N GKS+ N L ++ T + R L
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLAR--TSKTPGRTQLINLFEVADGKRLVDLPGY-- 72
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
+ + L K Q ++ + HPL + + ++
Sbjct: 73 GYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLV 132
Query: 241 MNKCESLHNGTGSLAGAAAESLML----GFGDPIAISAETGLGMTELYEAL 287
+ A + G S+ G+ +L + L
Sbjct: 133 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKL 183
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.4 bits (140), Expect = 2e-10
Identities = 26/235 (11%), Positives = 69/235 (29%), Gaps = 36/235 (15%)
Query: 121 PTV-MIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
PT+ +++G P GK+ + +L R + T F+
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPT--REFNVGQYRRDMVKTYKSFEFFLPDN 59
Query: 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV 239
E L++ + + D + + + ++ +
Sbjct: 60 EEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKT--FF 117
Query: 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVL 299
+ C AA + + G P ++ ++ + + Y
Sbjct: 118 VESICVDPEV-------IAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSY----- 165
Query: 300 NDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQ--EDRVLV 352
S ++++ + L+ + +VG+S ++N + + R++
Sbjct: 166 --------------ESLDEEQDR---DLSYIKIMDVGQSYVVNRVADHIQSRIVY 203
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 20/143 (13%), Positives = 37/143 (25%)
Query: 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383
P + +VG P GK+ + L + + P R ++
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61
Query: 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNS 443
+ K A ++ RK L V DA ++
Sbjct: 62 GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121
Query: 444 ALYKRVKEAVPQEIQTVIPQVTG 466
+ V A +++ P
Sbjct: 122 CVDPEVIAANIVQVKLGSPDYVN 144
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.5 bits (140), Expect = 2e-10
Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 41/213 (19%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386
+ I G N GK++LL L + + +Y G V LVD +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDS-----VRPTVVSQEPLSAADYDGSGVTLVDF--PGHVK 58
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEE---------------GRGLVVIV 431
+ +++ +V +D +++ E G +++
Sbjct: 59 LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 118
Query: 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG-IPVVFTSALEGRG----------- 479
NK +L + ++K+A+ EIQ VI + + V E
Sbjct: 119 NKSELF----TARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQST 174
Query: 480 ---RIAVMHQVIDTYQKWCLRLPTSRLNRWLRK 509
+ A + + ++ + S+ W+ +
Sbjct: 175 DGFKFANLEASVVAFEGSINKRKISQWREWIDE 207
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.2 bits (108), Expect = 3e-06
Identities = 26/186 (13%), Positives = 47/186 (25%), Gaps = 27/186 (14%)
Query: 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
P+++I G N GK++L L V A ++D
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDS-------VRPTVVSQEPLSAADYDGSGVTLVD---- 52
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD------LEVGKWLRKHAPQ 234
+ + + + IFM+D L +++
Sbjct: 53 --FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 110
Query: 235 IKPI-VAMNKCESLHNGTGSLAGAAAES-------LMLGFGDPIAISAETGLGMTELYEA 286
I +A NK E S A ES + + +
Sbjct: 111 GIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDV 170
Query: 287 LRPSVE 292
L+ +
Sbjct: 171 LQSTDG 176
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 57.8 bits (138), Expect = 3e-10
Identities = 27/185 (14%), Positives = 62/185 (33%), Gaps = 20/185 (10%)
Query: 320 ESKLPLQLAIVGRPNVGKSTLLNALLQEDRV-LVGPEAGLTRDSVRVHFEYQGRTVYLVD 378
E LP ++A+ GR NVGKS+ +N+L+ + + G T+ + V +
Sbjct: 20 EGGLP-EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPG 78
Query: 379 TAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRG----------LV 428
+ E+ + V ++D + ++ + ++
Sbjct: 79 YGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI 138
Query: 429 VIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488
VI K D + + K V++ + ++ S+ +G+ +
Sbjct: 139 VIATKADKIPKGKWDKHAKVVRQT--------LNIDPEDELILFSSETKKGKDEAWGAIK 190
Query: 489 DTYQK 493
+
Sbjct: 191 KMINR 195
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 56.7 bits (135), Expect = 6e-10
Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 7/172 (4%)
Query: 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAG 179
LP + + GR NVGKS+ N LI R+ + + + +D G
Sbjct: 23 LPEIALAGRSNVGKSSFINSLINRKN----LARTSSKPGKTQTLNFYIINDELHFVDVPG 78
Query: 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIV 239
S S + M + + ++ + H + + P++
Sbjct: 79 YGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI 138
Query: 240 AMNKCESLHNGTG---SLAGAAAESLMLGFGDPIAISAETGLGMTELYEALR 288
+ + + I S+ET G E + A++
Sbjct: 139 VIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIK 190
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.0 bits (126), Expect = 9e-09
Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 18/176 (10%)
Query: 116 DINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVL 175
+ + + ++IIG +VGK++ R + + ++ ++ ++
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAF-VSTVGIDFKVKTIYRNDKRIKLQIW 59
Query: 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS----GLHPLDLEVGKWLRKH 231
D+AG E R +T I M D+ + K
Sbjct: 60 DTAGQE----------RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD 109
Query: 232 APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
Q+ + E + A+ L F SA+ + + + +E L
Sbjct: 110 NAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEF---FEASAKDNINVKQTFERL 162
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.2 bits (124), Expect = 1e-08
Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 14/169 (8%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQ-EDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383
++ I+G +VGK++ L G+ ++ + + + DTAG
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG-- 63
Query: 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNS 443
+E+ + + A L+ D + + + + +
Sbjct: 64 -QERYRTITTAYYRG-------AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLL 115
Query: 444 ALYKRVKEAVPQEIQTVIPQVT---GIPVVFTSALEGRGRIAVMHQVID 489
K E Q+ G SA + +++D
Sbjct: 116 VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 164
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 52.0 bits (123), Expect = 2e-08
Identities = 24/170 (14%), Positives = 52/170 (30%), Gaps = 9/170 (5%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++ I+G GK+T+L L + V P G ++V T+
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPY 65
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIV-NKMDLLSGRQNS 443
+ ++ + E + ++V+ NK D+
Sbjct: 66 WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ----- 120
Query: 444 ALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493
+ + + + TSA +G G M +++T +
Sbjct: 121 ---AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 167
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 38.5 bits (88), Expect = 7e-04
Identities = 24/165 (14%), Positives = 41/165 (24%), Gaps = 11/165 (6%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++I+G GK+ + RL T +V + K
Sbjct: 8 ILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN--------LKFQVWDLGGL 59
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
+ + A + I + LE + + M
Sbjct: 60 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119
Query: 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
+ + SL A + SA G G+ E E L
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQI---FKTSATKGTGLDEAMEWL 161
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.5 bits (120), Expect = 6e-08
Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 17/168 (10%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
+++IG VGKS L R + + + + I+ ++ ++ D+AG E
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSF-ITTIGIDFKIKTVDINGKKVKLQIWDTAGQE- 62
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA---PQIKPIV 239
R +T I + D+ +++ +V
Sbjct: 63 ---------RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 113
Query: 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
T A A+ L + F I SA+ + E++ L
Sbjct: 114 GNKSDMETRVVTADQGEALAKELGIPF---IESSAKNDDNVNEIFFTL 158
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (104), Expect = 7e-06
Identities = 32/173 (18%), Positives = 60/173 (34%), Gaps = 15/173 (8%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYL--VDTAGW 382
+++ ++G VGKS LL ++ D+ + D + G+ V L DTAG
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVE-DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG- 60
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQN 442
+E+ + + A + LV D + R + VN+ +
Sbjct: 61 --QERFRTITTAYYRG-------AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLL 111
Query: 443 SALYKR--VKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493
K V + + + GIP + +SA + + Q+
Sbjct: 112 LVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 164
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 51.2 bits (121), Expect = 8e-08
Identities = 27/212 (12%), Positives = 66/212 (31%), Gaps = 46/212 (21%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTR-----DSVRVHFEYQGRTVYLVDTAGW 382
+++G + GK+TLL+ + V G+T+ + E +
Sbjct: 9 SVLGHVDHGKTTLLDHIRG-SAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 383 LQREKEKGPASLSVMQSRKN---LMRAHVVALVLDAEE----------VRAVEEGRGLVV 429
+ A + L++D E VV
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV 127
Query: 430 IVNKMDLLSGRQ----------NSALYKRVKEAVPQEIQTVIPQV--------------- 464
NK+D + G + S +V++ + ++ ++ ++
Sbjct: 128 AANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTD 187
Query: 465 --TGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494
+ + ++ SA+ G G ++ ++ Q++
Sbjct: 188 FASQVSIIPISAITGEGIPELLTMLMGLAQQY 219
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 37/218 (16%), Positives = 64/218 (29%), Gaps = 46/218 (21%)
Query: 121 PTVMIIGRPNVGKSALFNRL------IRRREALVYNTPDDHVTRDIREGLAKLGDLRFKV 174
P V ++G + GK+ L + + R + + + D+ EG+ +F +
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSI 65
Query: 175 LDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQ 234
++ + + + A AI ++D+ G P E +
Sbjct: 66 RETLPGLFFIDT-PGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQE--ALNILRMYR 122
Query: 235 IKPIVAMNKC--------------------------ESLHNGTGSLAGAAAESL------ 262
+VA NK + L L G E
Sbjct: 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERF 182
Query: 263 -----MLGFGDPIAISAETGLGMTELYEALRPSVEDYM 295
I ISA TG G+ EL L + Y+
Sbjct: 183 DRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 49.3 bits (116), Expect = 2e-07
Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 7/169 (4%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L+L ++G N GK+T+L ED + P T E++G + + D G
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVDTISP----TLGFNIKTLEHRGFKLNIWDVGGQ-- 56
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSA 444
+ + + + + R ++ + L+ +
Sbjct: 57 -KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 115
Query: 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493
A+ + ++ + + SA+ G + + ++D
Sbjct: 116 PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 164
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 37.7 bits (86), Expect = 0.001
Identities = 18/167 (10%), Positives = 45/167 (26%), Gaps = 15/167 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++++G N GK+ + + + T ++ + + D G ++
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHR------GFKLNIWDVGGQKS 58
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
+ + V+ R + + ++ N
Sbjct: 59 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL-------LVEERLAGATLLIFAN 111
Query: 243 KCESLHNGTGSLAGAAAESLMLGFGDP--IAISAETGLGMTELYEAL 287
K + + + A E + SA TG + + L
Sbjct: 112 KQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWL 158
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.9 bits (115), Expect = 2e-07
Identities = 22/153 (14%), Positives = 38/153 (24%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386
L +G N GK+TLL+ L + + P T + + + +
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 62
Query: 387 KEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSALY 446
+ V A V E VI+ + A
Sbjct: 63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAEL 122
Query: 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ + I + V S + G
Sbjct: 123 RSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 155
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.7 bits (91), Expect = 3e-04
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 6/166 (3%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++ +G N GK+ L + L R A + T + + + L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 62
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRK-HAPQIKPIVAM 241
+ A+ + + + + + D+ K AP +
Sbjct: 63 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAEL 122
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
L N TGS + + S G E ++ L
Sbjct: 123 RSALGLLNTTGSQRIEGQRPVEV-----FMCSVVMRNGYLEAFQWL 163
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 48.6 bits (115), Expect = 3e-07
Identities = 26/170 (15%), Positives = 57/170 (33%), Gaps = 20/170 (11%)
Query: 123 VMIIGRPNVGKSALFNRLIRRR--EALVYNTPDDHVTRDIR-EGLAKLGDLRFKVLDSAG 179
+++IG VGK+ + R + D R I +G ++ ++ D+AG
Sbjct: 9 LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDG----KRIKLQIWDTAG 64
Query: 180 LETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG--LHPLDLEVGKWLRKHAPQIKP 237
E R +T + + D+ + + + + ++
Sbjct: 65 QE----------RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 114
Query: 238 IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
++ NKC+ S +L G + SA+ + + + L
Sbjct: 115 MILGNKCDVNDKRQVSKERGEKLALDYGI-KFMETSAKANINVENAFFTL 163
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (106), Expect = 4e-06
Identities = 31/172 (18%), Positives = 54/172 (31%), Gaps = 22/172 (12%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYL--VDTAGW 382
+L ++G VGK+ +L + D + + D E G+ + L DTAG
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSE-DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG- 64
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE------VRAVEEGRGLVVIVNKMDL 436
Q +++ R A + LV D +R + +
Sbjct: 65 -QERFR----TITTAYYRG----AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM 115
Query: 437 LSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488
+ G + KR +E + GI + TSA +
Sbjct: 116 ILGNKCDVNDKRQV---SKERGEKLALDYGIKFMETSAKANINVENAFFTLA 164
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (113), Expect = 5e-07
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 13/167 (7%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFK--VLDSAGL 180
VM++G VGK+ L R + T V D R + + ++ K + D+AG
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGA--FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
E + R A + T A F +H + +
Sbjct: 67 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI------HEYAQHDVALMLLGN 120
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
A+ L F + SA+TGL + + A+
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYGLPF---METSAKTGLNVDLAFTAI 164
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (100), Expect = 2e-05
Identities = 30/172 (17%), Positives = 59/172 (34%), Gaps = 15/172 (8%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLV--DTAGWLQ 384
+ +VG VGK+ LL + + + D + G V L DTAG Q
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG--Q 66
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGR---Q 441
S++ R AH + L+ D + + + + +++
Sbjct: 67 ERFR----SVTHAYYRD----AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLL 118
Query: 442 NSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493
+ + + V +E + + G+P + TSA G + ++
Sbjct: 119 GNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 170
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 6e-07
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 8/173 (4%)
Query: 318 DDESKLPLQLAIVGRPNVGKSTLLNALLQ-EDRVLVGPEAGLTRDSVRVHFEYQGRTVYL 376
D++ L++ I+G VGKS+LL + G+ + + + +
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60
Query: 377 VDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDL 436
DTAG Q +L+ R V V + ++ + +
Sbjct: 61 WDTAG--QERFR----TLTPSYYRGAQGVILVYD-VTRRDTFVKLDNWLNELETYCTRND 113
Query: 437 LSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
+ + V + + + + SA G ++++
Sbjct: 114 IVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVE 166
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 2e-06
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 20/178 (11%)
Query: 116 DINLLPT--VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFK 173
D ++L T ++IIG VGKS+L R + + +
Sbjct: 1 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLA 59
Query: 174 VLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG----LHPLDLEVGKWLR 229
+ D+AG E R +T + Q I + DV L +
Sbjct: 60 IWDTAGQE----------RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYC 109
Query: 230 KHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
+ +V + + A + F I SA+T G+ +E L
Sbjct: 110 TRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLF---IEASAKTCDGVQCAFEEL 164
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.3 bits (111), Expect = 1e-06
Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 12/143 (8%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387
VG + GK+ L LL + +V+ + R +
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 63
Query: 388 E--------KGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSG 439
+ + + + ++ L + A++ L++ NK D+
Sbjct: 64 LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA-- 121
Query: 440 RQNSALYKRVKEAVPQEIQTVIP 462
+ K +++ + +E+ T+
Sbjct: 122 --MAKSAKLIQQQLEKELNTLRV 142
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.2 bits (90), Expect = 7e-04
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 6/122 (4%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V+ +G + GK+ LF RL+ + + D + L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
+ +A V+ F + DV L+ + ++ ++A N
Sbjct: 63 QLL--DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS----MALKNSPSLLIACN 116
Query: 243 KC 244
K
Sbjct: 117 KQ 118
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 46.2 bits (108), Expect = 2e-06
Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 11/170 (6%)
Query: 327 LAIVGRPNVGKSTLLNALLQ------EDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTA 380
L I G + GK+TL L + D++ + G+T D F+ + + LVD
Sbjct: 8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAP 67
Query: 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGR 440
G ++ ++ + E + + + +IV
Sbjct: 68 GH-ADLIRAVVSAADIIDLALI-VVDAKEGPKTQTGEHMLILDHFNIPIIVVITK---SD 122
Query: 441 QNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDT 490
+ E + + I + ++ SA G G + + +I T
Sbjct: 123 NAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITT 172
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 13/174 (7%)
Query: 117 INLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLD 176
IN + I G + GK+ L L ++ + R I D+ F
Sbjct: 6 IN----LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITI------DIGFSAFK 55
Query: 177 SAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK 236
+ A+ ++D + G E L I
Sbjct: 56 LENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPII 115
Query: 237 PIVAMNKC---ESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
++ + E + + + L I ISA+TG G+ EL +
Sbjct: 116 VVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLI 169
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 3e-06
Identities = 28/167 (16%), Positives = 56/167 (33%), Gaps = 14/167 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++IG GKS L ++ I ++ N ++ ++ D+AG E
Sbjct: 8 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII-NVGGKYVKLQIWDTAGQE- 65
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDV--RSGLHPLDLEVGKWLRKHAPQIKPIVA 240
R +T + A+ + D+ R + L + + I I+
Sbjct: 66 ---------RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 116
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
NK + + + A+ + + SA TG + E +
Sbjct: 117 GNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVEEAFVQC 162
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 28/171 (16%), Positives = 50/171 (29%), Gaps = 20/171 (11%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQ-EDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWL 383
+ ++G GKS LL+ ++ + + G+ S ++ + + + DTAG
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG-- 63
Query: 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMD------LL 437
Q +R A LV D + + +L
Sbjct: 64 QER--------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 115
Query: 438 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488
G + R + Q + + TSAL G Q
Sbjct: 116 CGNKKDLDADREV---TFLEASRFAQENELMFLETSALTGENVEEAFVQCA 163
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 45.5 bits (106), Expect = 4e-06
Identities = 23/164 (14%), Positives = 49/164 (29%), Gaps = 5/164 (3%)
Query: 321 SKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVH-FEYQGRTVYLVDT 379
K +L +G N GK+TLL+ L + P T + + + + +
Sbjct: 10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQ 69
Query: 380 AGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSG 439
A + + + + + R LD+ ++++ NK+D
Sbjct: 70 ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129
Query: 440 RQNS----ALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ + + V S L+ +G
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQG 173
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 39.3 bits (90), Expect = 5e-04
Identities = 18/166 (10%), Positives = 44/166 (26%), Gaps = 1/166 (0%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++ +G N GK+ L + L R T G+ + + +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWK 75
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAM 241
A+ + + + + ++ + K P+ +
Sbjct: 76 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERL 135
Query: 242 NKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
+ L+ T + + L + S G E + +
Sbjct: 136 REMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWM 181
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 5e-06
Identities = 25/171 (14%), Positives = 53/171 (30%), Gaps = 22/171 (12%)
Query: 123 VMIIGRPNVGKSALFNRLIRRR--EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
+++IG VGK+ L R + D + + + ++ ++ D+AG
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVE---INGEKVKLQIWDTAGQ 64
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDV---RSGLHPLDLEVGKWLRKHAPQIKP 237
E R +T + I D+ S + I
Sbjct: 65 E----------RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV 114
Query: 238 IVAMNKCESLHNGTGS-LAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
+V + A +E+ + + + SA+ + +L+ L
Sbjct: 115 LVGNKIDLAERREVSQQRAEEFSEAQDMYY---LETSAKESDNVEKLFLDL 162
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 5e-06
Identities = 27/157 (17%), Positives = 52/157 (33%), Gaps = 10/157 (6%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLV--DTAGW 382
++ ++G VGK+ L+ Q G A + D + E G V L DTAG
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQ-GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG- 63
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQN 442
+E+ + + ++ + + E + +L G +
Sbjct: 64 --QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQ-YASNKVITVLVGNK- 119
Query: 443 SALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ + V Q+ + + + TSA E
Sbjct: 120 --IDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 154
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 45.0 bits (105), Expect = 6e-06
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 9/160 (5%)
Query: 321 SKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVH-FEYQGRTVYLVDT 379
+ ++ IVG N GK+T+L + V P G + + ++ + + ++
Sbjct: 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 71
Query: 380 AGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSG 439
+ V+ + R V L GL++ NK D+
Sbjct: 72 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131
Query: 440 RQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ + + +K ++ + AL G G
Sbjct: 132 MTVAEISQFLKLTSIKDH--------QWHIQACCALTGEG 163
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 41.1 bits (95), Expect = 9e-05
Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 15/167 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V+I+G N GK+ + + T +V + + RF + D G E+
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN------NTRFLMWDIGGQES 71
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
+S + + D + + + ++ N
Sbjct: 72 LRSSWNTYYTNTEF-------VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFAN 124
Query: 243 KCESLHNGTGS-LAGAAAESLMLGFGDPI-AISAETGLGMTELYEAL 287
K + T + ++ + + I A A TG G+ + E +
Sbjct: 125 KQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM 171
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 46.1 bits (108), Expect = 6e-06
Identities = 22/120 (18%), Positives = 37/120 (30%), Gaps = 26/120 (21%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQED----------------RVLVGPEAGLTRDSVRVHFE 368
+++ +VG+PNVGKST +A D + + +
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 369 -------YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAV 421
V +VD AG + E + +L A + V+DA
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHE---GRGLGNKFLDDLRMASALIHVVDATGKTDP 117
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 39.9 bits (92), Expect = 6e-04
Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 24/110 (21%)
Query: 125 IIGRPNVGKSALFNRL--------------IRRREALVYNTPDD-------HVTRDIREG 163
++G+PNVGKS F+ I + Y D E
Sbjct: 5 VVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEY 64
Query: 164 LAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDV 213
L + K++D AGL A G L + L I ++D
Sbjct: 65 RNGLALIPVKMVDVAGLVPGAHEGRGLGN---KFLDDLRMASALIHVVDA 111
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 44.6 bits (104), Expect = 7e-06
Identities = 30/156 (19%), Positives = 53/156 (33%), Gaps = 9/156 (5%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV-HFEYQGRTVYLVDTAGWL 383
+++ ++G N GK+TLL L ED + P G SV+ F+ +
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPY 76
Query: 384 QREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNS 443
R + L + + R L +++ NK DLL+ S
Sbjct: 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS 136
Query: 444 ALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ + + ++ + SAL G G
Sbjct: 137 EIAEGLNLHTIRDR--------VWQIQSCSALTGEG 164
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 41.9 bits (97), Expect = 6e-05
Identities = 23/170 (13%), Positives = 52/170 (30%), Gaps = 21/170 (12%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++++G N GK+ L +L + + T ++ + G +
Sbjct: 19 ILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ----------------GFKL 62
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD--LEVGKWLRKHAPQIKPIVA 240
+ + T I++ID + E+ + L + P++
Sbjct: 63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDP---IAISAETGLGMTELYEAL 287
+ L + A +L + SA TG G+ + +
Sbjct: 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV 172
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 44.3 bits (103), Expect = 7e-06
Identities = 21/155 (13%), Positives = 47/155 (30%), Gaps = 7/155 (4%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
+++ +VG GK+T+L L + V P T EY+ + + D G
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQ-- 54
Query: 385 REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQNSA 444
+K + ++ + E + + + + L+ +
Sbjct: 55 -DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
Query: 445 LYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ ++ + + T A G G
Sbjct: 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 21/168 (12%), Positives = 48/168 (28%), Gaps = 17/168 (10%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++++G GK+ + +L T + ++ F V D G +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGE------IVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI--VA 240
R + + + R ++ E+ + L + + + A
Sbjct: 57 --------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 108
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPI-AISAETGLGMTELYEAL 287
+ + + I A A +G G+ E + L
Sbjct: 109 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL 156
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.9 bits (108), Expect = 8e-06
Identities = 44/261 (16%), Positives = 88/261 (33%), Gaps = 52/261 (19%)
Query: 328 AIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFE-YQGRTV----------YL 376
+++ + GKSTL ++L+Q ++ +AG R + E +G T+
Sbjct: 21 SVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMS 80
Query: 377 VDTAGWLQREKEKGPASLSVMQSR----------KNLMRAHVVALVLDAEE--------- 417
+ ++++ + ++++ S L +V+D E
Sbjct: 81 DEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV 140
Query: 418 -VRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 476
+A+ E VV++NK+D + + KE + Q + V I + +
Sbjct: 141 LRQALGERIKPVVVINKVD-----RALLELQVSKEDLYQTFARTVESVNVIVSTYADEVL 195
Query: 477 GRGRIAVMHQVI---DTYQKWCLRLPTSRLNRWLRKV------MGRHSWKDQSAQPKIKY 527
G ++ + W + R+ +K M W D PK K
Sbjct: 196 GDVQVYPARGTVAFGSGLHGWAFTIRQ-FATRYAKKFGVDKAKMMDRLWGDSFFNPKTKK 254
Query: 528 FTQV------KARPPTFVAFL 542
+T K F F+
Sbjct: 255 WTNKDTDAEGKPLERAFNMFI 275
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Score = 44.6 bits (105), Expect = 9e-06
Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 40/201 (19%)
Query: 327 LAIVGRPNVGKSTLLNALLQE----------------DRVLVGPEAGLTRDSVRVHFEYQ 370
+ +G + GK+TL AL D+ G+T ++ V +E
Sbjct: 6 VGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETA 65
Query: 371 GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE----------VRA 420
R VD G K ++ + LV+ A + + A
Sbjct: 66 KRHYSHVDCPGHADYIKN-------MITG---AAQMDGAILVVSAADGPMPQTREHILLA 115
Query: 421 VEEG-RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ G +VV +NK+D++ + L V+ V + +PV+ SAL
Sbjct: 116 RQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 172
Query: 480 RIAVMHQVIDTYQKWCLRLPT 500
++ + +W ++
Sbjct: 173 QMHRNPKTRRGENEWVDKIWE 193
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 17/178 (9%)
Query: 321 SKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTA 380
S L++ I+G GK+T+L L + V P G Y+ + + D
Sbjct: 14 SNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN----VETLSYKNLKLNVWDLG 69
Query: 381 -----GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMD 435
R A++ + + R + L + L+V NK D
Sbjct: 70 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 129
Query: 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493
S + K + ++ +V +SA++G G + +ID ++
Sbjct: 130 QPGALSASEVSKELNLVELKDR--------SWSIVASSAIKGEGITEGLDWLIDVIKE 179
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 1e-05
Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 14/167 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V++IG VGKS L +R R + + ++ K +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTRNE---FNLESKSTIGVEFATRSIQVDGKTIK------AQI 57
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHA-PQIKPIVA 240
T+G +R +T+ A+ + D+ L ++E K LR HA I ++
Sbjct: 58 WDTAGQ--ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 115
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
NK + H A A + I SA + E ++ +
Sbjct: 116 GNKSDLRHLRAVPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNI 161
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 3e-05
Identities = 27/171 (15%), Positives = 57/171 (33%), Gaps = 18/171 (10%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQ-EDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAG-- 381
++ ++G VGKS LL+ + E + G+ + + + + + DTAG
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64
Query: 382 ---WLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLS 438
+ +G ++ + V L E + ++++ NK DL
Sbjct: 65 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLK-ELRDHADSNIVIMLVGNKSDLRH 123
Query: 439 GRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
R P + + + + TSAL+ ++
Sbjct: 124 LRAV-----------PTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 163
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 4/170 (2%)
Query: 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDS 177
N+L V+I+G VGK++L +R + + + Y + +V D+
Sbjct: 1 NIL-KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDT 59
Query: 178 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKP 237
AG E + G R A V T + F L +
Sbjct: 60 AGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA---NVNSPETFPFV 116
Query: 238 IVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
I+ S A + LG SA+ + + +E +
Sbjct: 117 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 166
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (102), Expect = 2e-05
Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 14/194 (7%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
+++IG VGKS L R Y V I+ ++ ++ D+AG E
Sbjct: 9 LLLIGNSGVGKSCLLLRFSDDTYTNDYI-STIGVDFKIKTVELDGKTVKLQIWDTAGQE- 66
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDV--RSGLHPLDLEVGKWLRKHAPQIKPIVA 240
R +T++ + I + DV + + + + + + R + ++
Sbjct: 67 ---------RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV 117
Query: 241 MNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEALRPSVEDYMLRVLN 300
NKC+ A + + SA + + + + +++ M +
Sbjct: 118 GNKCDLKDKRVVEYDVAKEFADANKMP-FLETSALDSTNVEDAFLTMARQIKESMSQQNL 176
Query: 301 DSCTQNNSSTQDVT 314
+ TQ +V
Sbjct: 177 NETTQKKEDKGNVN 190
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.9 bits (87), Expect = 0.001
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVL-VGPEAGLTRDSVRVHFEYQGRTVYLVDTAG 381
+L ++G VGKS LL + G+ V + + + + DTAG
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG 64
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 11/171 (6%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYN-TPDDHVTRDIREGLAKLGDLRFKVLDSAGLE 181
++ +G VGK+ R + + T A+ + L+
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 182 TEATSGSILDRTAGMTANVLAKTQFAIFMID--VRSGLHPLDLEVGKWLRKHAPQIKPIV 239
T+G +R +T + M D + + + + + IV
Sbjct: 68 LWDTAGQ--ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125
Query: 240 AMNKCESLHNGTGSLAGAA---AESLMLGFGDPIAISAETGLGMTELYEAL 287
+ L + A A+ + + SA TG + + E L
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPY---FETSAATGQNVEKAVETL 173
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 44.0 bits (103), Expect = 3e-05
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
L+ IVG PNVGKST A+
Sbjct: 11 LKTGIVGMPNVGKSTFFRAI 30
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 42.5 bits (99), Expect = 9e-05
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVL 175
I+G PNVGKS F + + N P + T D E + D RF L
Sbjct: 15 IVGMPNVGKSTFFRAITKSVLGNPANYP--YATIDPEEAKVAVPDERFDWL 63
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 42.4 bits (98), Expect = 3e-05
Identities = 21/158 (13%), Positives = 52/158 (32%), Gaps = 12/158 (7%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTA---G 381
++L +VG GK+T +N + + + + ++ ++ +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIAS-GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61
Query: 382 WLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQ 441
+ +G +++ M + + L + +G ++V+ NK DL
Sbjct: 62 SMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD 121
Query: 442 NSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
L +++ + Q+ I S E
Sbjct: 122 EKELIEKMNLSAIQDR--------EICCYSISCKEKDN 151
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 4e-05
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 6/168 (3%)
Query: 327 LAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW---- 382
L IVG GK+ LL ++ V + + + + L DTAG
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYD 64
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQN 442
R + +M + + EV+ ++++ NK DL +
Sbjct: 65 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHT 124
Query: 443 SALYKRVKEAV--PQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488
++K+ P+E + + ++ + SA G V
Sbjct: 125 RRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 172
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.001
Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 22/177 (12%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++I+G GK+ L + + VY E K +L D+AGLE
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALW--DTAGLED 62
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
+ + + ++ P + I+ N
Sbjct: 63 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT--------PEVKHFCPNVPIILVGN 114
Query: 243 KCESLHNGTGSLAGAAAESLM------------LGFGDPIAISAETGLGMTELYEAL 287
K + ++ A + +G + SA+T G+ E++E
Sbjct: 115 KKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.7 bits (100), Expect = 6e-05
Identities = 38/210 (18%), Positives = 67/210 (31%), Gaps = 60/210 (28%)
Query: 320 ESKLPLQLAIVGRPNVGKSTLLNALLQE------------------------------DR 349
+ K + + ++G + GKST L+ + D+
Sbjct: 2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 61
Query: 350 VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVV 409
+ E G+T D FE V ++D G K M + +A
Sbjct: 62 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKN--------MIT--GTSQADCA 111
Query: 410 ALVLDAE----EVRAVEEG--------------RGLVVIVNKMDLLSGRQNSALYKRVKE 451
L++ E ++G R L+V VNKMD + + + ++ + +
Sbjct: 112 ILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDE--SRFQEIVK 169
Query: 452 AVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481
I+ V +P V S G I
Sbjct: 170 ETSNFIKKVGYNPKTVPFVPISGWNGDNMI 199
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Score = 43.0 bits (101), Expect = 6e-05
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 325 LQLAIVGRPNVGKSTLLNAL 344
+ IVG PNVGKSTL NAL
Sbjct: 3 FKCGIVGLPNVGKSTLFNAL 22
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Score = 37.2 bits (86), Expect = 0.004
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 20/83 (24%)
Query: 125 IIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVL--------- 175
I+G PNVGKS LFN L + N P T + G+ + D R L
Sbjct: 7 IVGLPNVGKSTLFNALTKAG-IEAANYP--FCTIEPNTGVVPMPDPRLDALAEIVKPERI 63
Query: 176 --------DSAGLETEATSGSIL 190
D AGL A+ G L
Sbjct: 64 LPTTMEFVDIAGLVAGASKGEGL 86
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Score = 41.2 bits (96), Expect = 1e-04
Identities = 30/177 (16%), Positives = 55/177 (31%), Gaps = 39/177 (22%)
Query: 327 LAIVGRPNVGKSTLLNALLQ---------------EDRVLVGPEAGLTRDSVRVHFEYQG 371
+ +G + GK+TL A+ + D G+T ++ V +
Sbjct: 6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65
Query: 372 RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEE-----------VRA 420
R D G K + LV+ A + +
Sbjct: 66 RHYAHTDCPGHADYVKNMI-TGTAP---------LDGCILVVAANDGPMPQTREHLLLAR 115
Query: 421 VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEG 477
+VV VNK D Q+S + + V+ + + + + P++ SAL
Sbjct: 116 QIGVEHVVVYVNKADA---VQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCA 169
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 10/172 (5%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
++ +VG VGK+ LL + G D+ + G+ V L Q
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 385 ------REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLS 438
R +S++ + EVR ++++ K+DL
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 439 GRQ--NSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488
+ K++ + + ++ + + SAL RG V + I
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.002
Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 26/179 (14%)
Query: 123 VMIIGRPNVGKSALFNRLIRRR--EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGL 180
+++G VGK+ L + D++ + +G + + D+AG
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDG----KPVNLGLWDTAGQ 63
Query: 181 ETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVA 240
E + ++ + A F + + +R H P I+
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASF--------ENVRAKWYPEVRHHCPNTPIILV 115
Query: 241 MNKC----------ESLHNGTGSLAGAAAESLMLGFGDP--IAISAETGLGMTELYEAL 287
K + + ++ G + SA T G+ +++
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.3 bits (90), Expect = 4e-04
Identities = 21/168 (12%), Positives = 46/168 (27%), Gaps = 17/168 (10%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++++G VGKS++ R + Y + + + + L
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVND---------EDVRLML 55
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHA---PQIKPIV 239
T+G +T Q + + + + +
Sbjct: 56 WDTAGQEEFDA--ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ 113
Query: 240 AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
A A+ L L F S + L ++E+++ L
Sbjct: 114 NKIDLLDDSCIKNEEAEGLAKRLKLRF---YRTSVKEDLNVSEVFKYL 158
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.2 bits (82), Expect = 0.004
Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 7/167 (4%)
Query: 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGW 382
+ +++ +VG VGKS+++ + + + D + + V L+
Sbjct: 1 VAIKMVVVGNGAVGKSSMIQRYCK-GIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 59
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQN 442
Q E + + +V D E A+ R VV D+ +
Sbjct: 60 GQEEFDA-----ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQ 113
Query: 443 SALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489
+ + + E + + + TS E V + +
Sbjct: 114 NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 160
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 27/201 (13%), Positives = 57/201 (28%), Gaps = 40/201 (19%)
Query: 327 LAIVGRPNVGKSTLLNALLQ--EDRVLVGPEAGLTRDS---------VRVHFEYQGRTVY 375
+ +VG + GK+TL AL D G+T Y V
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVC 67
Query: 376 LVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRA--------------- 420
+ + ++ +
Sbjct: 68 PYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL 127
Query: 421 -VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRG 479
+ + +++ NK++L+ + Y+++KE + + P++ SAL G
Sbjct: 128 QIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVA------ENAPIIPISALHGAN 181
Query: 480 RIAVMHQVIDTYQKWCLRLPT 500
++ + D +PT
Sbjct: 182 IDVLVKAIED-------FIPT 195
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.8 bits (89), Expect = 6e-04
Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 18/169 (10%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V ++G VGKS++ R + N P + + + +F + D+AGLE
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNIN-PTIGASFMTKTVQYQNELHKFLIWDTAGLE- 64
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDV--RSGLHPLDLEVGKWLRKHAPQIKPIVA 240
R + + AI + D+ L V + + P I +A
Sbjct: 65 ---------RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 115
Query: 241 MNKCESLHNGTGSLA--GAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
NKC+ A+S+ F + SA+ + + EL+ +
Sbjct: 116 GNKCDLTDVREVMERDAKDYADSIHAIF---VETSAKNAININELFIEI 161
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.5 bits (91), Expect = 6e-04
Identities = 44/229 (19%), Positives = 74/229 (32%), Gaps = 63/229 (27%)
Query: 304 TQNNSSTQDVTSPE---DDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL--------- 351
T++ + Q+ E D K + + +G + GKSTL +L ++
Sbjct: 1 TEDATDLQNEVDQELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIE 60
Query: 352 ---------------------VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG 390
E G T + R +FE + R L+D G
Sbjct: 61 REAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMI 120
Query: 391 PASLSVMQSRKNLMRAHVVALVLDAEE-----------------VRAVEEG-RGLVVIVN 432
+A + LV+ A V A +G LVV++N
Sbjct: 121 NG----------ASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN 170
Query: 433 KMDLLSGRQNSALYKRVKEAVPQEIQTVI--PQVTGIPVVFTSALEGRG 479
KMD S + + YK + + ++ V T + + SA G+
Sbjct: 171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQN 219
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 7e-04
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 18/169 (10%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
+IIG VGKS L ++ ++ ++ ++ ++ D+AG E
Sbjct: 7 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAGQE- 64
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSG-LHPLDLEVGKWLRKHAPQIKPIVAM 241
R +T + A+ + D+ + R I+ +
Sbjct: 65 ---------RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILI 115
Query: 242 NKC---ESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
E+ + T A AE L F + SA+TG + + +
Sbjct: 116 GNKADLEAQRDVTYEEAKQFAEENGLLF---LEASAKTGENVEDAFLEA 161
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.5 bits (91), Expect = 9e-04
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 311 QDVTSPEDDESKLPL-QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY 369
QD S + L L Q+A+VG + GKS++L + D + G TR + +
Sbjct: 12 QDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV-TRRPLVLQLVN 70
Query: 370 Q 370
Sbjct: 71 S 71
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 0.001
Identities = 29/169 (17%), Positives = 56/169 (33%), Gaps = 18/169 (10%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
+IIG VGKS L + +R V++ + ++ ++ D+AG
Sbjct: 6 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDG-KQIKLQIWDTAG--- 61
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKPIV-- 239
+ +T + A+ + D+ + R+H+ I+
Sbjct: 62 -------QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 114
Query: 240 -AMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
+ ES + A A L F + SA+T + E +
Sbjct: 115 GNKSDLESRRDVKREEGEAFAREHGLIF---METSAKTACNVEEAFINT 160
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.002
Identities = 28/167 (16%), Positives = 47/167 (28%), Gaps = 11/167 (6%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V++IG VGKS L N +++ + R + +LD +
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 65
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
E G ++ + I I+ N
Sbjct: 66 ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQ------LRRARQTEDIPIILVGN 119
Query: 243 KCESLHNGTGSL--AGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
K + + S+ A A F I SA + EL+E +
Sbjct: 120 KSDLVRCREVSVSEGRACAVVFDCKF---IETSAAVQHNVKELFEGI 163
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 38.3 bits (88), Expect = 0.002
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 311 QDV-TSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE 355
QDV + D LP Q+ +VG + GKS++L ++ D + G
Sbjct: 11 QDVFNTLGSDPLDLP-QIVVVGSQSSGKSSVLENIVGRDFLPRGSG 55
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (85), Expect = 0.002
Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 6/165 (3%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V+I+G VGK++L N+ + ++ + Y +E + + ++ D+AG E
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
+ G R A V T F + S ++ ++ P + ++
Sbjct: 64 FQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSWRDEFLIQASPRDPENFPFV--VLGN- 119
Query: 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
L N + A A SA+ + + + ++ +
Sbjct: 120 -KIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTI 163
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (83), Expect = 0.004
Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 6/166 (3%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY--LVDTAGW 382
L++ I+G VGK++L+N + + +A + D + R V + DTAG
Sbjct: 3 LKVIILGDSGVGKTSLMNQYV-NKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 383 LQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLSGRQN 442
+ + N ++ G +
Sbjct: 62 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121
Query: 443 SALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488
++ + Q IP TSA E +
Sbjct: 122 ---DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 164
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Score = 37.5 bits (86), Expect = 0.002
Identities = 36/219 (16%), Positives = 57/219 (26%), Gaps = 54/219 (24%)
Query: 320 ESKLPLQLAIVGRPNVGKSTLLNALLQE-------------------------------- 347
E K L+ G + GKSTL+ LL +
Sbjct: 5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLV 64
Query: 348 DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAH 407
D + E G+T D +F R + DT G
Sbjct: 65 DGLQAEREQGITIDVAYRYFSTAKRKFIIADTPG----------HEQYTRNMATGASTCD 114
Query: 408 VVALVLDAEE----------VRAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI 457
+ +++DA A G +V+ L+G + +
Sbjct: 115 LAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAE 174
Query: 458 QTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWCL 496
T + V SAL+G + + Y L
Sbjct: 175 GIAFKPTT-MAFVPMSALKGDN-VVNKSERSPWYAGQSL 211
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 0.003
Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 10/172 (5%)
Query: 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384
L+ +VG VGK+ LL + + D V G+ L Q
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ 67
Query: 385 ------REKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVEEGRGLVVIVNKMDLLS 438
R + ++ + E++ ++I ++DL
Sbjct: 68 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 127
Query: 439 GRQNSALYKRVKEAV--PQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVI 488
+ A +KE ++ Q + ++ V SAL +G V + I
Sbjct: 128 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.003
Identities = 28/167 (16%), Positives = 46/167 (27%), Gaps = 15/167 (8%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V+++G P VGKSAL + R I + V D +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVV---DGEEASLMVYDIWEQDG 60
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
V + T F + + + I+ N
Sbjct: 61 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL-------RRARQTDDVPIILVGN 113
Query: 243 KCESLHNGTGSL--AGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
K + + + S+ A A F I SA + L+E +
Sbjct: 114 KSDLVRSREVSVDEGRACAVVFDCKF---IETSAALHHNVQALFEGV 157
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 0.003
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 6/165 (3%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
V+++G VGKS+L NR + + + + + ++ D+AG E
Sbjct: 9 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDG-HFVTMQIWDTAGQER 67
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMN 242
+ RT + F++ L E + P+ P V +
Sbjct: 68 FRSL-----RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 122
Query: 243 KCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
+ S A A G SA+ + +E
Sbjct: 123 NKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 167
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.004
Identities = 21/175 (12%), Positives = 40/175 (22%), Gaps = 31/175 (17%)
Query: 123 VMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182
++++G GK+ + +L + T +++F V D G +
Sbjct: 15 ILMLGLDAAGKTTILYKLKL------GQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 68
Query: 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLR-----KHAPQIKP 237
+ V E + L +
Sbjct: 69 IRPLWRHYYT------------GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
Query: 238 IVAMNKC-----ESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTELYEAL 287
++ NK H L A +G G+ E L
Sbjct: 117 LIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV---QPSCATSGDGLYEGLTWL 168
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Score = 36.5 bits (83), Expect = 0.004
Identities = 26/205 (12%), Positives = 62/205 (30%), Gaps = 39/205 (19%)
Query: 319 DESKLPLQLAIVGRPNVGKSTLLNALLQ------------------------------ED 348
+ + + + +VG + GK+TL+ A+
Sbjct: 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCK 62
Query: 349 RVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHV 408
+ + R + +D G + + + +
Sbjct: 63 KPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP 122
Query: 409 VALVLDAEEVRAVEEGR--GLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466
E A+ L+++ NK+D++S + + Y+++K+
Sbjct: 123 FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA------EN 176
Query: 467 IPVVFTSALEGRGRIAVMHQVIDTY 491
+P++ SAL I + + I+ Y
Sbjct: 177 VPIIPVSALHKIN-IDSLIEGIEEY 200
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 607 | |||
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.94 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.92 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.9 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.9 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.89 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.89 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.89 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.89 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.89 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.88 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.88 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.88 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.88 | |
| d1mkya3 | 81 | Probable GTPase Der, C-terminal domain {Thermotoga | 99.87 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.87 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 99.87 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.86 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.86 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.86 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.86 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.86 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.86 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.86 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.85 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.85 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.85 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.85 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.84 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.84 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.84 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.84 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.84 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.83 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.83 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.83 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.83 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.83 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.83 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.83 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.83 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.83 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.83 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.82 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.82 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.82 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.82 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.82 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.82 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.82 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.82 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.82 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.82 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.82 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.82 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.82 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.82 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.81 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.81 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.81 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.81 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.8 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.8 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.8 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.8 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.8 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.8 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.8 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.8 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.8 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.79 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.79 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.79 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.79 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.79 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.79 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.79 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.79 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.78 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.78 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.77 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.77 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.77 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.77 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.77 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.76 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.76 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.76 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.75 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.74 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.74 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.74 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.74 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.74 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.73 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.73 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.72 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.7 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.7 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.68 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.68 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.65 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 99.64 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.64 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.64 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.63 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.63 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.61 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.61 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.61 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.6 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.6 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.6 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.59 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.59 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.58 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.58 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.58 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.57 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.57 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.54 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.54 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.53 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 99.53 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.5 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.5 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.49 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.48 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.47 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.43 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.43 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.42 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.39 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.35 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.35 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.32 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.3 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.24 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.23 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.22 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.21 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.21 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.11 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.08 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.03 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.03 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 98.94 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.92 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.86 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.73 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.72 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.38 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.22 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 98.05 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 98.03 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 98.03 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.92 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.91 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.74 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.69 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.66 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.53 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.5 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.4 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.38 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.23 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 97.14 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.96 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.87 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 96.84 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.23 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.21 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 96.12 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.84 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.72 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.59 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.55 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 95.53 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.39 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.37 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.2 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.1 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.08 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.07 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.03 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.01 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.01 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 94.92 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.89 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 94.7 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.68 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.67 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 94.6 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 94.58 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 94.56 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.52 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 94.51 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 94.42 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.4 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 94.38 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.32 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.29 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.25 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 94.21 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.14 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.11 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.11 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 94.1 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 94.06 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.04 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 94.03 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.03 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.01 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 93.95 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.92 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 93.92 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 93.86 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.84 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 93.84 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 93.83 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 93.76 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.71 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 93.7 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.7 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.67 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.63 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.57 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.56 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 93.55 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.52 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.52 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 93.45 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.42 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 93.42 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.37 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 93.36 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.35 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.33 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 93.23 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 93.21 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.2 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 93.19 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.17 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.16 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.12 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.09 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.05 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.04 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 93.03 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.01 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 93.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 92.98 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.91 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 92.91 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 92.87 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 92.86 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 92.84 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.82 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.81 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 92.8 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.79 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 92.77 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.7 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 92.69 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.65 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 92.6 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.52 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 92.37 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.35 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.34 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.32 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 92.3 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 92.3 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.27 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.11 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 92.08 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.06 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 92.05 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.94 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 91.92 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 91.9 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 91.86 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.82 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 91.74 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 91.73 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.71 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.71 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 91.63 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.62 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 91.6 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.58 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 91.42 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.2 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 91.18 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 91.18 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.13 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.09 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 91.05 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.68 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.44 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.39 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 90.33 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.28 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.27 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.26 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 90.07 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.05 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.04 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 89.84 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 89.79 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 89.41 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 89.4 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.17 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.02 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.0 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.75 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.71 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.38 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.29 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 88.29 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.27 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 88.14 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.09 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 87.96 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 87.67 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.58 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 87.39 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 87.38 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 87.35 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.13 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 86.74 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.69 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 86.64 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.49 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.39 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 86.37 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 85.96 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 85.85 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 85.78 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.77 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.49 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.38 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.19 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 85.08 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.69 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 84.2 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 83.96 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.89 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 83.83 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 83.8 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 83.76 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 83.61 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 83.56 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 83.28 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.06 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 83.0 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.56 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 82.56 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 82.47 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 82.44 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.01 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 81.81 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 81.66 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 81.25 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 80.64 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 80.3 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 80.27 |
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=2.5e-26 Score=214.89 Aligned_cols=166 Identities=23% Similarity=0.304 Sum_probs=136.4
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
..|+|+|.+|||||||+|+|++.+...+++.++ +|++.........+..+.+|||||+...... ....+...+..+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~--tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~--~~~~~~~~~~~~ 81 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ--TTRKRLRGILTEGRRQIVFVDTPGLHKPMDA--LGEFMDQEVYEA 81 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC--CCCSCEEEEEEETTEEEEEEECCCCCCCCSH--HHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCC--cccccccceeeeeeeeeeecccccccccccc--cchhcccccccc
Confidence 579999999999999999999998877888887 8999988888889999999999999754332 222445667778
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+.+||++|+|+|++++.+..+..+.+++++...++|+++|+||+|+..... +........++..+++++||++|.|+
T Consensus 82 ~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA~~~~gi 158 (178)
T d1wf3a1 82 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSALDERQV 158 (178)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred cccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHH---HHHHHHHhhcccCceEEEecCCCCCH
Confidence 999999999999999999988888899988777899999999999976421 11222333455667899999999999
Q ss_pred HHHHHHhccchHH
Q 007334 281 TELYEALRPSVED 293 (607)
Q Consensus 281 ~eL~~~i~~~l~~ 293 (607)
++|++.|.+.+++
T Consensus 159 ~~L~~~i~~~lpe 171 (178)
T d1wf3a1 159 AELKADLLALMPE 171 (178)
T ss_dssp HHHHHHHHTTCCB
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=8.6e-25 Score=202.84 Aligned_cols=164 Identities=32% Similarity=0.560 Sum_probs=125.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|+|++|||||||+|+|++.+.+.+++.++ +|+......+...+..+.++||||+....... ........+..++
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-~~~~~~~~~~~~~ 78 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEG--VTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI-ISQKMKEVTLNMI 78 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC----------------CCSEEEEEETTEEEEEEECTTTTSSGGGC-CCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCc--eeeccccccccccccccccccccceeeeeccc-ccccccccccccc
Confidence 69999999999999999999988888888888 89998888888899999999999987543222 2223455677888
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
..+|++++++|.+++....+..+.+++++. ++|+|+|+||+|+.... ..+...++...++.+++++||++|.|++
T Consensus 79 ~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~--~~pviiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~i~iSAk~g~gid 153 (171)
T d1mkya1 79 READLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLREF---EREVKPELYSLGFGEPIPVSAEHNINLD 153 (171)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHHH---HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred ccCcEEEEeecccccccccccccccccccc--cccccccchhhhhhhhh---hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence 999999999999999999998888998887 78999999999997632 2333445666788889999999999999
Q ss_pred HHHHHhccchHH
Q 007334 282 ELYEALRPSVED 293 (607)
Q Consensus 282 eL~~~i~~~l~~ 293 (607)
+|+++|.+.+++
T Consensus 154 ~L~~~i~~~l~e 165 (171)
T d1mkya1 154 TMLETIIKKLEE 165 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC
Confidence 999999988876
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=1.7e-23 Score=196.53 Aligned_cols=167 Identities=34% Similarity=0.482 Sum_probs=121.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccc--cCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE--KGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~~~~~~~~~ 400 (607)
..++|+++|++|||||||+|+|++.+...+++.+++|+......+.+++..+.++||||+...... ..........+.
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 86 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 86 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHH
Confidence 358999999999999999999999988999999999999988889999999999999998654211 111112224556
Q ss_pred HHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 401 KNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
.++..+|++++|+|+..+ .....++|+|+|+||+|+...... ....+ .+.+.+.+....+.|++
T Consensus 87 ~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~--~~~~~----~~~~~~~~~~~~~~~i~ 160 (186)
T d1mkya2 87 DSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREK--RYDEF----TKLFREKLYFIDYSPLI 160 (186)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGG--CHHHH----HHHHHHHCGGGTTSCEE
T ss_pred HHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhh--hhhhH----HHHHHHHhcccCCCeEE
Confidence 778899999999999875 234578999999999998765321 12222 22333444445578999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 471 FTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
++||++|.|+++|++.|.+.++.|.
T Consensus 161 ~vSa~~g~gv~~L~~~i~~~~~~~~ 185 (186)
T d1mkya2 161 FTSADKGWNIDRMIDAMNLAYASYT 185 (186)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=6.6e-24 Score=194.48 Aligned_cols=158 Identities=25% Similarity=0.336 Sum_probs=126.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+++|+||||||||+|+|++.+.+.++..++ +|++.........+..+.++||||+...... ........+..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--~~~~~~~~~~~~ 77 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAG--TTRDVLREHIHIDGMPLHIIDTAGLREASDE--VERIGIERAWQE 77 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTT--CCCSCEEEEEEETTEEEEEEECCCCSCCSSH--HHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccc--cccceEeeeeeccCceeeecccccccccccc--chhHHHHHHHHH
Confidence 479999999999999999999998887888888 8888888888899999999999999854432 222445667788
Q ss_pred hhccCEEEEEEecCCCCCHhHHHH-HHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEV-GKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~-~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
+..+|++++++|+.......+... ...++....++|+++|+||+|+....... ...+..+++++||++|.|
T Consensus 78 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~--------~~~~~~~~~~iSAk~~~g 149 (161)
T d2gj8a1 78 IEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM--------SEVNGHALIRLSARTGEG 149 (161)
T ss_dssp HHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE--------EEETTEEEEECCTTTCTT
T ss_pred HHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH--------HHhCCCcEEEEECCCCCC
Confidence 999999999999998877666553 45555555679999999999987653211 122333789999999999
Q ss_pred hHHHHHHhccc
Q 007334 280 MTELYEALRPS 290 (607)
Q Consensus 280 i~eL~~~i~~~ 290 (607)
+++|+++|.+.
T Consensus 150 i~~L~~~l~~~ 160 (161)
T d2gj8a1 150 VDVLRNHLKQS 160 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.1e-23 Score=193.02 Aligned_cols=147 Identities=27% Similarity=0.418 Sum_probs=119.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
+++|+++|+||||||||+|+|++.+...++..+|+|++.....+.+.+..+.++||||+.+... ..+.....++..++
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~--~~~~~~~~~~~~~~ 78 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD--EVERIGIERAWQEI 78 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS--HHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccc--cchhHHHHHHHHHH
Confidence 3799999999999999999999998888999999999999989999999999999999866521 12334445677788
Q ss_pred hhccEEEEEeccchh-------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 404 MRAHVVALVLDAEEV-------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 404 ~~ad~~llViD~~~~-------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
..+|++++++|+.+. .....++|+++|+||+|+.+.... +....+.+++
T Consensus 79 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~------------------~~~~~~~~~~ 140 (161)
T d2gj8a1 79 EQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------------MSEVNGHALI 140 (161)
T ss_dssp HTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------------EEEETTEEEE
T ss_pred HhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH------------------HHHhCCCcEE
Confidence 899999999999875 112247999999999998765321 1123467899
Q ss_pred EcccCCCCCHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~ 490 (607)
++||++|.|+++|+++|.+.
T Consensus 141 ~iSAk~~~gi~~L~~~l~~~ 160 (161)
T d2gj8a1 141 RLSARTGEGVDVLRNHLKQS 160 (161)
T ss_dssp ECCTTTCTTHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 99999999999999988764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.6e-23 Score=190.29 Aligned_cols=150 Identities=32% Similarity=0.459 Sum_probs=120.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+||+++|+||||||||+|+|+|.+...+++.+++|+......+...+..+.+|||||+.... ....+......++.++.
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-~~~~~~~~~~~~~~~~~ 79 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET-NDLVERLGIERTLQEIE 79 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSC-CTTCCCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCC-ccHHHHHHHHHHHHHHH
Confidence 58999999999999999999999888999999999999988999999999999999975542 22234445567778889
Q ss_pred hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCC
Q 007334 405 RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 476 (607)
Q Consensus 405 ~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~ 476 (607)
.+|++++|+|++++ .......++++++||+|+.+....... ...+ . .+.+++++||++
T Consensus 80 ~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~--------~~~~----~--~~~~~~~vSA~~ 145 (160)
T d1xzpa2 80 KADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEI--------KNKL----G--TDRHMVKISALK 145 (160)
T ss_dssp HCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHH--------HHHH----T--CSTTEEEEEGGG
T ss_pred hCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccchhhhHHH--------HHHh----C--CCCcEEEEECCC
Confidence 99999999999986 223457899999999999876442211 1111 1 256899999999
Q ss_pred CCCHHHHHHHHHH
Q 007334 477 GRGRIAVMHQVID 489 (607)
Q Consensus 477 g~gv~~l~~~i~~ 489 (607)
|.|+++|++.|.+
T Consensus 146 g~gi~~L~~~I~k 158 (160)
T d1xzpa2 146 GEGLEKLEESIYR 158 (160)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998865
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=8.3e-23 Score=191.78 Aligned_cols=171 Identities=22% Similarity=0.364 Sum_probs=126.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhH--HHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSI--LDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~--~~~~~~~~ 197 (607)
..+|+|+|++|||||||+|+|++.+.+.+++.++ +|+....+...+.+..+.++||||+......... .......+
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~ 85 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPG--TTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV 85 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC--------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcceeecccc--cccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence 3689999999999999999999998888888887 8888888888889999999999998643221110 00123456
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHH----HhcCCCCcEEee
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAES----LMLGFGDPIAIS 273 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~----~~~~~~~~i~iS 273 (607)
...+..+|++++|+|++.+...+...+..+++.. +.|+|+|+||+|+.........+....+ ...++.+++++|
T Consensus 86 ~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~--~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vS 163 (186)
T d1mkya2 86 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTS 163 (186)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECB
T ss_pred HHHHhcCCEEEEeecccccchhhHHHHHHHHHHc--CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEe
Confidence 6778899999999999999999988888888876 7899999999999865443222222222 223455789999
Q ss_pred cCCCCChHHHHHHhccchHHH
Q 007334 274 AETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~~ 294 (607)
|++|.|+++|++.|.+.+..+
T Consensus 164 a~~g~gv~~L~~~i~~~~~~~ 184 (186)
T d1mkya2 164 ADKGWNIDRMIDAMNLAYASY 184 (186)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999998776653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=3.5e-23 Score=193.14 Aligned_cols=151 Identities=25% Similarity=0.293 Sum_probs=116.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
-.|+++|.+|||||||+|+|++.+...+++.+++|++.........+..+.+|||||+..... .........+..++.
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~--~~~~~~~~~~~~~~~ 83 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGEFMDQEVYEALA 83 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeeccccccccccc--ccchhcccccccccc
Confidence 369999999999999999999988788999999999999988889999999999999865421 122333455667888
Q ss_pred hccEEEEEeccchh---------h---HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEc
Q 007334 405 RAHVVALVLDAEEV---------R---AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFT 472 (607)
Q Consensus 405 ~ad~~llViD~~~~---------~---~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i 472 (607)
.||++|+|+|++++ . ....++|+++|+||+|+.+.. .+.. +.+.+.+ ....++++
T Consensus 84 ~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~--~~~~--------~~~~~~~---~~~~~~~i 150 (178)
T d1wf3a1 84 DVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP--EEAM--------KAYHELL---PEAEPRML 150 (178)
T ss_dssp SCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH--HHHH--------HHHHHTS---TTSEEEEC
T ss_pred cccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCH--HHHH--------HHHHhhc---ccCceEEE
Confidence 99999999999875 1 122478999999999997652 1111 1222222 24578999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 007334 473 SALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 473 SA~~g~gv~~l~~~i~~~ 490 (607)
||++|.|+++|++.|.+.
T Consensus 151 SA~~~~gi~~L~~~i~~~ 168 (178)
T d1wf3a1 151 SALDERQVAELKADLLAL 168 (178)
T ss_dssp CTTCHHHHHHHHHHHHTT
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999888653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.89 E-value=3e-23 Score=193.93 Aligned_cols=161 Identities=21% Similarity=0.219 Sum_probs=116.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCC----CceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPD----DHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~----~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+|||||+||||||||+|+|++.......+... ...|.+.......+.+..+.++||||+. ++...
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~ 75 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA----------DLIRA 75 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH----------HHHHH
T ss_pred EEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccc----------ccccc
Confidence 379999999999999999999765433332221 1134444455556688899999999987 67778
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHH----hcCCCCcEE
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESL----MLGFGDPIA 271 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~----~~~~~~~i~ 271 (607)
+...+..+|++++|+|++++...++.++..++... ++|+++|+||+|+........ ........ .....++++
T Consensus 76 ~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~--~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 153 (179)
T d1wb1a4 76 VVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 153 (179)
T ss_dssp HHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred hhhhhhhccccccccccccccchhhhhhhhhhhhc--CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEE
Confidence 88899999999999999999999888888888877 889999999999986432111 11111111 122237799
Q ss_pred eecCCCCChHHHHHHhccchHH
Q 007334 272 ISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+||++|+|+++|++.|.+.+++
T Consensus 154 iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 154 ISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEccCCcCHHHHHHHHHhcCCc
Confidence 9999999999999999988765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=3.3e-23 Score=189.53 Aligned_cols=157 Identities=26% Similarity=0.425 Sum_probs=121.8
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|+|+||||||||+|+|+|.+...++..++ +|+..........+..+.+|||||+...... .........+...+
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~~~~~~~ 78 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPG--TTRDVISEEIVIRGILFRIVDTAGVRSETND-LVERLGIERTLQEI 78 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSC--CSSCSCCEEEEETTEEEEEEESSCCCSSCCT-TCCCCCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeecccc--ccccceeEEEEeCCeeEEeccccccccCCcc-HHHHHHHHHHHHHH
Confidence 79999999999999999999998888888888 8888888888889999999999998643321 11111234556778
Q ss_pred hccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChH
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMT 281 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~ 281 (607)
..+|++++|+|++++...++..+..++. ..++++++||+|+..... ........... .+++++||++|.|++
T Consensus 79 ~~ad~ii~v~d~~~~~~~~~~~~~~~~~----~~~~i~~~~k~d~~~~~~---~~~~~~~~~~~-~~~~~vSA~~g~gi~ 150 (160)
T d1xzpa2 79 EKADIVLFVLDASSPLDEEDRKILERIK----NKRYLVVINKVDVVEKIN---EEEIKNKLGTD-RHMVKISALKGEGLE 150 (160)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHHHHHHT----TSSEEEEEEECSSCCCCC---HHHHHHHHTCS-TTEEEEEGGGTCCHH
T ss_pred HhCCEEEEEEeCCCCcchhhhhhhhhcc----cccceeeeeeccccchhh---hHHHHHHhCCC-CcEEEEECCCCCCHH
Confidence 9999999999999999888766655543 568999999999987533 22222222333 378999999999999
Q ss_pred HHHHHhcc
Q 007334 282 ELYEALRP 289 (607)
Q Consensus 282 eL~~~i~~ 289 (607)
+|+++|.+
T Consensus 151 ~L~~~I~k 158 (160)
T d1xzpa2 151 KLEESIYR 158 (160)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998854
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=1.4e-22 Score=189.75 Aligned_cols=162 Identities=28% Similarity=0.369 Sum_probs=116.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc-----hhHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS-----GSILDRTAGM 196 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~-----~~~~~~~~~~ 196 (607)
+|+|||+||||||||+|+|++.+. .+++.|| +|++.... .+ ..+.+|||||+...... ..+...+...
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~-~~~~~~g--~T~~~~~~--~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPG--VTRKIIEI--EW--KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 74 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTT--CTTSCEEE--EE--TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCC--Eeeccccc--cc--ccceecccCCceeccccccccccccchhhhhh
Confidence 699999999999999999999765 4777888 88886542 33 35788999998533221 1122233344
Q ss_pred HHHHhhccCEEEEEEecCC-----------CCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC
Q 007334 197 TANVLAKTQFAIFMIDVRS-----------GLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG 265 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~-----------~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~ 265 (607)
....++.+|++++|+|++. +....+.++.+++++. ++|+|+|+||+|+....... ...........
T Consensus 75 ~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~~~-~~~~~~~~~~~ 151 (184)
T d2cxxa1 75 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQEV-INFLAEKFEVP 151 (184)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHHHH-HHHHHHHHTCC
T ss_pred hhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHHHH-HHHHHHHhccc
Confidence 5566788999999999863 5666677778888876 78999999999987643211 11112222222
Q ss_pred CC----CcEEeecCCCCChHHHHHHhccchHH
Q 007334 266 FG----DPIAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 266 ~~----~~i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+. .++++||++|.|+++|++.|.+.+++
T Consensus 152 ~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 152 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence 22 36899999999999999999988765
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=2.3e-22 Score=186.26 Aligned_cols=156 Identities=26% Similarity=0.323 Sum_probs=109.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
+|+++|++|||||||+|+|+|.+...+++.+++|+......+...+..+.++||||+..... ..........+..++..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-~~~~~~~~~~~~~~~~~ 80 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNMIRE 80 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeec-ccccccccccccccccc
Confidence 68999999999999999999988778999999999999988999999999999999876532 22334444566778889
Q ss_pred ccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccC
Q 007334 406 AHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSAL 475 (607)
Q Consensus 406 ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~ 475 (607)
||++++++|++++ .....++|+|+|+||+|+.+.. ...+..++.+ ....+++++||+
T Consensus 81 ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~---------~~~~~~~~~~----~~~~~~i~iSAk 147 (171)
T d1mkya1 81 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF---------EREVKPELYS----LGFGEPIPVSAE 147 (171)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH---------HHHTHHHHGG----GSSCSCEECBTT
T ss_pred CcEEEEeecccccccccccccccccccccccccccchhhhhhhhh---------hhHHHHHHHh----cCCCCeEEEecC
Confidence 9999999999865 2235689999999999986431 1112222221 224467999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 007334 476 EGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 476 ~g~gv~~l~~~i~~~~~~~~ 495 (607)
+|.|+++|+++|.+.+.+..
T Consensus 148 ~g~gid~L~~~i~~~l~e~~ 167 (171)
T d1mkya1 148 HNINLDTMLETIIKKLEEKG 167 (171)
T ss_dssp TTBSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCC
Confidence 99999999999988766543
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=8.1e-23 Score=190.97 Aligned_cols=164 Identities=24% Similarity=0.289 Sum_probs=113.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEe-eeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLA-KLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~-~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+.|+|+|+||||||||+|+|++.+.... +.++ .|.+...+.. ...+..+.+|||||+........ .....+..
T Consensus 2 ~~VaivG~~nvGKSTLin~L~~~~~~~~-~~~~--~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~---~~~~~~l~ 75 (180)
T d1udxa2 2 ADVGLVGYPNAGKSSLLAAMTRAHPKIA-PYPF--TTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK---GLGLEFLR 75 (180)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC-CCTT--CSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC---CSCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee-ccCC--CceeeeeceeeecCCCeEEEcCCCeeecCchHHH---HHHHHHHH
Confidence 5799999999999999999999876544 4444 4444444433 33567899999999875433221 12235567
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+..+|++++++|+..........+..++... ..++|+|+|+||+|+...+. .......+...+. +++++||++
T Consensus 76 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~-~~~~iSA~t 152 (180)
T d1udxa2 76 HIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEA--VKALADALAREGL-AVLPVSALT 152 (180)
T ss_dssp HHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTS-CEEECCTTT
T ss_pred HHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCC-eEEEEEcCC
Confidence 88999999999998764333333344444332 22579999999999986432 2222333334444 789999999
Q ss_pred CCChHHHHHHhccchHH
Q 007334 277 GLGMTELYEALRPSVED 293 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~~ 293 (607)
|+|+++|++.|.+.++.
T Consensus 153 g~gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 153 GAGLPALKEALHALVRS 169 (180)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999887753
|
| >d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Alpha-lytic protease prodomain-like superfamily: Probable GTPase Der, C-terminal domain family: Probable GTPase Der, C-terminal domain domain: Probable GTPase Der, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=2e-22 Score=159.45 Aligned_cols=79 Identities=28% Similarity=0.477 Sum_probs=75.5
Q ss_pred CCChHHHHHHHHHHHHhCCCCCCCCcCcEEEEeecCCCCCEEEEEecCCCCCCHHHHHHHHHHhHhh-CCCCceeEEEEE
Q 007334 497 RLPTSRLNRWLRKVMGRHSWKDQSAQPKIKYFTQVKARPPTFVAFLSGKKTLSDAELRFLTKSLKED-FDLGGIPIRITQ 575 (607)
Q Consensus 497 ~~~~~~l~~~l~~~~~~~~~~~~~~~~ki~~~~q~~~~pp~f~~~~n~~~~l~~~y~r~l~~~~~~~-~~~~g~pi~~~~ 575 (607)
+++|++||+||++++..+|+| +++|++|++|++.+||+|++|||+++.++++|+|||+|+||++ |||.|+||+|.|
T Consensus 1 Ri~T~~LN~~l~~~~~~~ppp---k~~Ki~Y~tQ~~~~PPtf~if~N~~~~~~~sY~ryL~n~lR~~~f~~~G~Pi~l~f 77 (81)
T d1mkya3 1 KVPSSAINSALQKVLAFTNLP---RGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKF 77 (81)
T ss_dssp CCCHHHHHHHHHHHHTTCCCS---TTCCEEEEEEEETTTTEEEEEESCSTTCCHHHHHHHHHHHHHHTCCCTTCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCC---CceeEEEEEEcCCCCeEEEEEeCCcccCCHHHHHHHHHHHHHHhCCCCccCEEEEE
Confidence 689999999999999999887 6789999999999999999999999999999999999999997 999999999999
Q ss_pred eec
Q 007334 576 RSV 578 (607)
Q Consensus 576 ~~~ 578 (607)
+++
T Consensus 78 r~~ 80 (81)
T d1mkya3 78 KRS 80 (81)
T ss_dssp EEC
T ss_pred EeC
Confidence 976
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4e-22 Score=184.18 Aligned_cols=157 Identities=17% Similarity=0.142 Sum_probs=109.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|||||||+++|.+....... + ++.+.....+..++ ..+.+|||||++ ++...+.
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~--~---~~~~~~~~~i~~~~~~~~l~i~D~~g~e----------~~~~~~~ 66 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEA--E---AAGHTYDRSIVVDGEEASLMVYDIWEQD----------GGRWLPG 66 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC--------------CEEEEEEEEETTEEEEEEEEECC-----------------CHH
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcC--C---eeeeeecceeeccccccceeeeeccccc----------ccceecc
Confidence 68999999999999999999987543221 1 33333333444444 578899999987 4555667
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.... .+...+... ..+.|+++|+||+|+...+.....+........+. +++++||+
T Consensus 67 ~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak 145 (168)
T d2gjsa1 67 HCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETSAA 145 (168)
T ss_dssp HHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTS-EEEECBTT
T ss_pred cchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCC-EEEEEeCC
Confidence 789999999999999987666652 233333333 24679999999999988766666666666667777 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++|+.|.+.+..
T Consensus 146 ~~~~v~~~f~~l~~~i~~ 163 (168)
T d2gjsa1 146 LHHNVQALFEGVVRQIRL 163 (168)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999876643
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=3.3e-22 Score=199.39 Aligned_cols=167 Identities=21% Similarity=0.300 Sum_probs=118.6
Q ss_pred HHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEE
Q 007334 192 RTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 192 ~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (607)
....+..+.+..+|+||+|+|++.|.+..+..+.++++ ++|.|+|+||+|+.+... .......+...+. ..+.
T Consensus 4 ka~r~i~~~i~~~DvIl~V~DaR~P~ss~~~~l~~~~~----~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~-~~i~ 76 (273)
T d1puja_ 4 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAV--TQQWKEHFENQGI-RSLS 76 (273)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS----SSCEEEEEECGGGSCHHH--HHHHHHHHHTTTC-CEEE
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCCCCHHHHHHHc----CCCeEEEEECccCCchHH--HHHHHHHHHhcCC-ccce
Confidence 35566778899999999999999999999877777664 689999999999987421 2223334444444 7899
Q ss_pred eecCCCCChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCcee
Q 007334 272 ISAETGLGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVL 351 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~ 351 (607)
+||.++.|..++.+.+.+.+.+........ .....+++|++||.||||||||+|+|.+...+.
T Consensus 77 isa~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------------~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~ 139 (273)
T d1puja_ 77 INSVNGQGLNQIVPASKEILQEKFDRMRAK-----------------GVKPRAIRALIIGIPNVGKSTLINRLAKKNIAK 139 (273)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHHHHHHHT-----------------TCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred eecccCCCccccchhhhhhhhhhhhhhhhc-----------------cCCCCceEEEEEecCccchhhhhhhhhccceEE
Confidence 999999999999888877766543221111 112346899999999999999999999999999
Q ss_pred ecCCCCceeeeEEEEEEEcCeEEEEEecCCCccc
Q 007334 352 VGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 352 ~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~ 385 (607)
+++.||+|++.... ..+..+.++||||+...
T Consensus 140 ~~~~pG~Tr~~~~i---~~~~~~~l~DTPGi~~p 170 (273)
T d1puja_ 140 TGDRPGITTSQQWV---KVGKELELLDTPGILWP 170 (273)
T ss_dssp -----------CCE---EETTTEEEEECCCCCCS
T ss_pred ECCcccccccceEE---ECCCCeEEecCCCcccc
Confidence 99999999986543 34677999999999765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.86 E-value=1.7e-21 Score=180.98 Aligned_cols=145 Identities=22% Similarity=0.274 Sum_probs=108.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+.+||+++|++|||||||+|+|.+.....+.+..|++.. .+.+.+..+.+||+||..... .....+
T Consensus 15 ~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~----~i~~~~~~~~i~d~~g~~~~~----------~~~~~~ 80 (176)
T d1fzqa_ 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKIR----------PYWRSY 80 (176)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE----EEEETTEEEEEEECSSCGGGH----------HHHHHH
T ss_pred CEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEE----EeccCCeeEeEeeccccccch----------hHHHHH
Confidence 458999999999999999999998877666666666544 456788899999999964331 234567
Q ss_pred HhhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++. .....++|+++|+||+|+.+...... +.+.+.........+
T Consensus 81 ~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~--------~~~~~~~~~~~~~~~ 152 (176)
T d1fzqa_ 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE--------IAEGLNLHTIRDRVW 152 (176)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHH--------HHHHTTGGGCCSSCE
T ss_pred hhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHH--------HHHHHHHHHHHhcCC
Confidence 8899999999999875 11234789999999999987643221 112222223334467
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|+|++++|++|.+
T Consensus 153 ~~~~~SA~tg~gv~e~~~~l~~ 174 (176)
T d1fzqa_ 153 QIQSCSALTGEGVQDGMNWVCK 174 (176)
T ss_dssp EEEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHh
Confidence 8999999999999999999876
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=9.9e-22 Score=183.49 Aligned_cols=150 Identities=25% Similarity=0.298 Sum_probs=105.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEE-EEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV-HFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~-~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.|+++|+||||||||+|+|+|.+... .+.+++|.+.... .....+..+.+|||||+........ . ....+..++.
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~--~-~~~~~l~~~~ 78 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKI-APYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK--G-LGLEFLRHIA 78 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEE-CCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC--C-SCHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCce-eccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHH--H-HHHHHHHHHH
Confidence 49999999999999999999886554 4455555544433 3334577899999999876522111 1 1234567888
Q ss_pred hccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
.+|++++++|+... .....++|+|+|+||+|+.+.+.. +.+ .+.+. ..+.++
T Consensus 79 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~----~~~----~~~~~-----~~~~~~ 145 (180)
T d1udxa2 79 RTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAV----KAL----ADALA-----REGLAV 145 (180)
T ss_dssp SSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHH----HHH----HHHHH-----TTTSCE
T ss_pred hhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHH----HHH----HHHHH-----hcCCeE
Confidence 99999999998643 112346899999999999865221 111 11222 136799
Q ss_pred EEcccCCCCCHHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++||++|+|+++|++.|.+.++
T Consensus 146 ~~iSA~tg~gid~L~~~i~~~l~ 168 (180)
T d1udxa2 146 LPVSALTGAGLPALKEALHALVR 168 (180)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988776543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=9.7e-22 Score=182.44 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=119.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+|||.+|||||||+++|++..+ ..+... ++.+.....+..++ ..+.+|||+|... +....
T Consensus 6 ~~Kv~lvG~~~vGKTsLi~r~~~~~f--~~~~~~--t~~~~~~~~~~~~~~~~~l~~~d~~g~~~----------~~~~~ 71 (173)
T d2fn4a1 6 THKLVVVGGGGVGKSALTIQFIQSYF--VSDYDP--TIEDSYTKICSVDGIPARLDILDTAGQEE----------FGAMR 71 (173)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCT--TCCEEEEEEEEETTEEEEEEEEECCCTTT----------TSCCH
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCC--Cccccc--ccccceeeEeccCCeeeeeeccccccccc----------ccccc
Confidence 46899999999999999999998764 233333 44555555555555 4678899999983 33334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++++|+|++++.+.... .+...+.+. ..+.|+++|+||+|+...+....++....+...+. +++++||
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 150 (173)
T d2fn4a1 72 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AYFEASA 150 (173)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECBT
T ss_pred chhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCC-EEEEEeC
Confidence 5677889999999999987666552 233323222 35789999999999987766666666667777777 7899999
Q ss_pred CCCCChHHHHHHhccchHH
Q 007334 275 ETGLGMTELYEALRPSVED 293 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~~ 293 (607)
++|.|++++|+.|.+.+.+
T Consensus 151 k~g~gv~e~f~~l~~~i~k 169 (173)
T d2fn4a1 151 KLRLNVDEAFEQLVRAVRK 169 (173)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=3.5e-22 Score=183.74 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=114.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++..+... ..+. ...+.........+ ..+.+|||+|..... ....
T Consensus 3 iKv~liG~~~vGKSsLi~rl~~~~~~~~-~~~t--i~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~ 69 (164)
T d1z2aa1 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKD-YKKT--IGVDFLERQIQVNDEDVRLMLWDTAGQEEFD----------AITK 69 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCC-SSCC--CSSSEEEEEEEETTEEEEEEEECCTTGGGTT----------CCCH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc-cccc--cccccceeeeeecCceeeeeeeccCCccchh----------hhhh
Confidence 4799999999999999999997654211 1221 22333333334443 578999999988432 2234
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.+++.+|++++|+|++++.+..+.. +.+.+.+..++.|+++|+||+|+...+....++....+...++ +++++||++|
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g 148 (164)
T d1z2aa1 70 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRTSVKED 148 (164)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEECBTTTT
T ss_pred hhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCC-EEEEeccCCC
Confidence 5688999999999999877666522 3333334456899999999999988766666666666677777 7899999999
Q ss_pred CChHHHHHHhccch
Q 007334 278 LGMTELYEALRPSV 291 (607)
Q Consensus 278 ~gi~eL~~~i~~~l 291 (607)
.|++++|+.|.+.+
T Consensus 149 ~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 149 LNVSEVFKYLAEKH 162 (164)
T ss_dssp BSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999987654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=7.2e-22 Score=183.33 Aligned_cols=150 Identities=21% Similarity=0.192 Sum_probs=109.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|.+|||||||+++|++.. ....+..++.+.....+.+++.. +.+|||+|..+... ...
T Consensus 5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~----------~~~ 72 (173)
T d2fn4a1 5 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA----------MRE 72 (173)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC----------CHH
T ss_pred CeEEEEEECCCCcCHHHHHHHHHhCC--CCcccccccccceeeEeccCCeeeeeecccccccccccc----------ccc
Confidence 34899999999999999999999753 34455666777777777888764 55799999755421 123
Q ss_pred HHHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.+++.+|++|+|+|.++. .. ...+.|+|+|+||+|+........ +. .+.++...
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~--~~---------~~~~~~~~ 141 (173)
T d2fn4a1 73 QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR--SE---------ASAFGASH 141 (173)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH--HH---------HHHHHHHT
T ss_pred hhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccch--hh---------hhHHHHhc
Confidence 567789999999999976 11 124789999999999875432111 11 11111123
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
++++++|||++|.||+++|+.+++.+.++.
T Consensus 142 ~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~ 171 (173)
T d2fn4a1 142 HVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171 (173)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence 679999999999999999999999876654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.86 E-value=9.6e-22 Score=181.71 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=116.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|++||.+|||||||+++|++.++.... .+. .+.+.....+... ...+.+|||||++ ++...+
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~~wDt~G~e----------~~~~~~ 71 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAF-VST--VGIDFKVKTIYRNDKRIKLQIWDTAGQE----------RYRTIT 71 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSC-CCC--CSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCCCCccc-ccc--cccceeeEEEEeecceEEEEEEECCCch----------hhHHHH
Confidence 468999999999999999999987642211 222 3334433444433 3579999999987 344556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..||++|+|+|++++.+..... +...+... ....|+++|+||+|+........++....+...++ +++++||+
T Consensus 72 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~e~Sak 150 (169)
T d3raba_ 72 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEASAK 150 (169)
T ss_dssp HTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTT
T ss_pred HHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCC-EEEEecCC
Confidence 66899999999999999865555422 33333332 45788999999999987766655655556667777 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|.|++++|+.|.+.+.
T Consensus 151 ~g~gv~e~f~~l~~~i~ 167 (169)
T d3raba_ 151 DNINVKQTFERLVDVIC 167 (169)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 99999999999987654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=3.7e-22 Score=186.78 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=106.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc-----CcchhHHHHHH
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK-----GPASLSVMQSR 400 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-----~~~~~~~~~~~ 400 (607)
.|+++|.||||||||+|+|+|.+ +.++++||+|++... +.+ ..+.+|||||+....... ...........
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~-~~~~~~~g~T~~~~~--~~~--~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 76 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIE--IEW--KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 76 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEE--EEE--TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-ceeeCCCCEeecccc--ccc--ccceecccCCceeccccccccccccchhhhhhhh
Confidence 58999999999999999999875 568999999999653 333 346789999974331111 01111223345
Q ss_pred HHHhhccEEEEEeccchh---------------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHh
Q 007334 401 KNLMRAHVVALVLDAEEV---------------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQT 459 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~---------------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 459 (607)
.+++.+|++++|+|++.. .....++|+|+|+||+|+.+... ...+.+. ..+..
T Consensus 77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~--~~~~~~~----~~~~~ 150 (184)
T d2cxxa1 77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ--EVINFLA----EKFEV 150 (184)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH--HHHHHHH----HHHTC
T ss_pred hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHH--HHHHHHH----HHhcc
Confidence 567789999999998753 12245899999999999876521 1222211 11111
Q ss_pred hCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 460 VIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 460 ~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.+. ....+++++||++|.|+++|++.|.+.+.+
T Consensus 151 ~~~-~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e 183 (184)
T d2cxxa1 151 PLS-EIDKVFIPISAKFGDNIERLKNRIFEVIRE 183 (184)
T ss_dssp CGG-GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccc-ccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence 110 112358899999999999999999887754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.2e-21 Score=181.31 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=118.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+++|+|+|.+|||||||+++|++..+. ....+. ++.+.....+...+ .++.+|||||++ ++...+
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~-~~~~~~--~~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~~~ 71 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGAT--IGVDFMIKTVEINGEKVKLQIWDTAGQE----------RFRSIT 71 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCC--CSEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC-Cccccc--ccceEEEEEEEECCEEEEEEEEECCCch----------hhHHHH
Confidence 468999999999999999999987642 122333 55666666666555 468899999987 455556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..+++.+|++++|+|.+++.+.... ++...+.+. ....|+++|+||+|+........++........++ +++++||+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~-~~~~~SAk 150 (171)
T d2ew1a1 72 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLETSAK 150 (171)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCC-EEEEEccC
Confidence 6788999999999999986655542 233434333 44689999999999987666655555556666677 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.||+++|..|...+
T Consensus 151 tg~gV~e~f~~l~~~l 166 (171)
T d2ew1a1 151 ESDNVEKLFLDLACRL 166 (171)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999998876544
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.86 E-value=6.9e-22 Score=184.56 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=106.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecC------CCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGP------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVM 397 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 397 (607)
.++|+++|+||+|||||+|+|++.......+ ..|+|.+.....+.+++..+.++||||+.++ ..
T Consensus 5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~----------~~ 74 (179)
T d1wb1a4 5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL----------IR 74 (179)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH----------HH
T ss_pred CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCcccccccccccccc----------cc
Confidence 4789999999999999999999764433332 3345555555566778899999999996433 13
Q ss_pred HHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 398 QSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 398 ~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
.+..++..+|++++|+|++++ .....++|+++|+||+|+.+.+.... .. .....+.+......+.
T Consensus 75 ~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~-~~----~~~~~~~~~~~~~~~~ 149 (179)
T d1wb1a4 75 AVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKR-TE----MIMKSILQSTHNLKNS 149 (179)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHH-HH----HHHHHHHHHSSSGGGC
T ss_pred chhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHH-HH----HHHHHHHHHhhcCCCC
Confidence 455677889999999999986 23356899999999999987532111 11 1112233333344567
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
|+++|||++|+|+++|++.|.+.+.+
T Consensus 150 ~iv~iSA~~g~gi~eL~~~I~~~l~~ 175 (179)
T d1wb1a4 150 SIIPISAKTGFGVDELKNLIITTLNN 175 (179)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEccCCcCHHHHHHHHHhcCCc
Confidence 99999999999999999999887654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.86 E-value=2.5e-21 Score=178.77 Aligned_cols=158 Identities=17% Similarity=0.180 Sum_probs=114.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+.+|+|+|.+|||||||+|++++.++ ..+... |..+.....+..++ ..+.+|||+|.. ++....
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~f--~~~~~~--T~~~~~~~~~~~~~~~~~l~i~d~~g~~----------~~~~~~ 69 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEP--TKADSYRKKVVLDGEEVQIDILDTAGQE----------DYAAIR 69 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCT--TCCEEEEEEEEETTEEEEEEEEECCC-------------CHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCCC--CcccCC--cccccccccccccccccccccccccccc----------chhhhh
Confidence 46899999999999999999998664 222222 33333334444444 478899999998 444556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..+++.+|++++|+|+++..+.... .+.+.+.+. ..+.|+++|+||+|+...+....++....+...+. +++++||
T Consensus 70 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa 148 (168)
T d1u8za_ 70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVETSA 148 (168)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECCT
T ss_pred hhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCC-eEEEEcC
Confidence 6788999999999999987666552 233333322 35789999999999987766666666666777777 7899999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|++++|+.|.+.+.
T Consensus 149 k~g~gv~e~f~~l~~~i~ 166 (168)
T d1u8za_ 149 KTRANVDKVFFDLMREIR 166 (168)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999886653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.5e-21 Score=179.39 Aligned_cols=158 Identities=17% Similarity=0.241 Sum_probs=116.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|++||.+|||||||+|+|++.+..... .+. ++.+........+ ...+.+|||+|++ ++.....
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~ 67 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTY-QAT--IGIDFLSKTMYLEDRTIRLQLWDTAGQE----------RFRSLIP 67 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSC-CCC--CSEEEEEEEEECSSCEEEEEEEEECCSG----------GGGGGHH
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCcc-ccc--eeeeccceeeccCCCceeeeecccCCcc----------hhccchH
Confidence 47999999999999999999987643221 222 3333333333333 3578999999998 3334456
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHH-hhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLR-KHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~-~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+..... +...+. ....+.|+++|+||+|+........++....+...++ .++++||++
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~SAk~ 146 (164)
T d1yzqa1 68 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV-MFIETSAKA 146 (164)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred HHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCC-EEEEecCCC
Confidence 6889999999999999877666522 222222 2345789999999999987766666666666777777 789999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.||+++|+.|.+.++
T Consensus 147 g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 147 GYNVKQLFRRVAAALP 162 (164)
T ss_dssp CTTHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHhhC
Confidence 9999999999988764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.7e-21 Score=178.90 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=115.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|||||||+++|++..+ ...... |..+........++ ..+.+|||+|.. .+.....
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~f--~~~~~~--T~~~~~~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~~ 68 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGTF--RESYIP--TVEDTYRQVISCDKSICTLQITDTTGSH----------QFPAMQR 68 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCC--CSSCCC--CSCEEEEEEEEETTEEEEEEEEECCSCS----------SCHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CCccCc--ceeeccccceeeccccceeccccccccc----------ccccccc
Confidence 5899999999999999999998764 222222 33444334444455 467889999998 3445556
Q ss_pred HHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhh---CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKH---APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
.++..+|++++|+|++++.+... ..+...+.+. ..+.|+++|+||+|+...+.+..++....+..+++ +++++||
T Consensus 69 ~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~-~~~e~Sa 147 (171)
T d2erxa1 69 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFMETSA 147 (171)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEECBT
T ss_pred ccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCC-eEEEEcC
Confidence 78899999999999998766655 2233333332 35789999999999987766666666666677777 7899999
Q ss_pred CCCCChHHHHHHhccch
Q 007334 275 ETGLGMTELYEALRPSV 291 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l 291 (607)
++|.|++++|+.|.+.+
T Consensus 148 k~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 148 KLNHNVKELFQELLNLE 164 (171)
T ss_dssp TTTBSHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999988654
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.6e-21 Score=178.21 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=117.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+|+|.+|||||||++++++.++.... .+. ++.+........++ ..+.+|||||++ ++....
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~ 70 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC-PHT--IGVEFGTRIIEVSGQKIKLQIWDTAGQE----------RFRAVT 70 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSC-TTS--CCCCEEEEEEEETTEEEEEEEEECTTGG----------GTCHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcc-ccc--ccccceeEEEEECCEEEEEEEeccCCch----------hHHHHH
Confidence 468999999999999999999987653221 222 44444444445554 478999999987 344455
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..+++.+|++++|+|+++..+.... .+...+.+. ....|+++|+||+|+........++....+...+. +++++||+
T Consensus 71 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sak 149 (166)
T d1z0fa1 71 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLEASAK 149 (166)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCC-EEEEEeCC
Confidence 6678999999999999886655542 233444333 45789999999999987766666666666677777 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++|+.|.+.+
T Consensus 150 tg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 150 TGENVEDAFLEAAKKI 165 (166)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999887643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=2.2e-21 Score=183.54 Aligned_cols=171 Identities=23% Similarity=0.295 Sum_probs=114.8
Q ss_pred cccccCCCEEEEecCCCCchhHHHHHhhccce-eeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHH--
Q 007334 114 KIDINLLPTVMIIGRPNVGKSALFNRLIRRRE-ALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSIL-- 190 (607)
Q Consensus 114 ~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~-~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~-- 190 (607)
..+....|+|+|+|+||||||||+|+|+|.+. +.++..++ +|.+...... ...+.++|++|...........
T Consensus 17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~--~t~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~ 91 (195)
T d1svia_ 17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPG--KTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREA 91 (195)
T ss_dssp GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC---------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHH
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccc--eeeecccccc---cccceEEEEEeeccccccccccch
Confidence 34566689999999999999999999998653 45555555 6666655432 3466778888876443322221
Q ss_pred -HHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHHHHHHHhc-CCC
Q 007334 191 -DRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGAAAESLML-GFG 267 (607)
Q Consensus 191 -~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~~~~~~~~-~~~ 267 (607)
..........+..+|++++|+|++++.+.++.++.++++.. ++|+++|+||+|+.+...... .......... ...
T Consensus 92 ~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~ 169 (195)
T d1svia_ 92 WGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY--GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred hhhHHhhhhccccchhhhhhhhhccccccccccccccccccc--cCcceechhhccccCHHHHHHHHHHHHHHhcccCCC
Confidence 12233444556778999999999999999998999999887 789999999999876432111 1111122222 233
Q ss_pred CcEEeecCCCCChHHHHHHhccch
Q 007334 268 DPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+++++||++|+|+++|+++|.+.+
T Consensus 170 ~~~~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 170 ELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=4.1e-21 Score=180.18 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=120.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee------------CCeeEEEecCCCCccccCch
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL------------GDLRFKVLDSAGLETEATSG 187 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~------------~~~~~~liDTpG~~~~~~~~ 187 (607)
+.+|+|+|.+|||||||+++|++.++.... .+. .+.+.....+.. ....+.+|||+|++
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e------ 75 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKF-ITT--VGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE------ 75 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEE-EEE--EEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH------
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCcc-CCc--ccceeeEEEEEEecccccccccccceEEeccccCCcch------
Confidence 468999999999999999999976542111 111 222222222221 12478999999988
Q ss_pred hHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHH
Q 007334 188 SILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESL 262 (607)
Q Consensus 188 ~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~ 262 (607)
++...+..++..+|++|+|+|++++.+.+. +..|+... ....|+++|+||+|+...+....++....+.
T Consensus 76 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~ 149 (186)
T d2f7sa1 76 ----RFRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD 149 (186)
T ss_dssp ----HHHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred ----hhHHHHHHHHhcCCEEEEEEecccccccee--eeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHH
Confidence 666777888999999999999987655443 55666543 2356889999999998877766666666777
Q ss_pred hcCCCCcEEeecCCCCChHHHHHHhccchHHHHhh
Q 007334 263 MLGFGDPIAISAETGLGMTELYEALRPSVEDYMLR 297 (607)
Q Consensus 263 ~~~~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~ 297 (607)
..++ +++++||++|+|++++++.|.+.+.+++.+
T Consensus 150 ~~~~-~~~e~Sak~~~~i~e~f~~l~~~i~~k~~~ 183 (186)
T d2f7sa1 150 KYGI-PYFETSAATGQNVEKAVETLLDLIMKRMEQ 183 (186)
T ss_dssp HTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 7887 789999999999999999999887665544
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=9.5e-22 Score=181.59 Aligned_cols=145 Identities=18% Similarity=0.207 Sum_probs=95.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|.+... .+.+.++.+.....+.+++. .+.+|||||..+.. .....+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~----------~~~~~~ 68 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVED---GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR----------WLPGHC 68 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC------------CEEEEEEEEETTEEEEEEEEECC-----------------CHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhCCcc---CCcCCeeeeeecceeeccccccceeeeecccccccc----------eecccc
Confidence 6899999999999999999997643 23334445555556677776 56689999964432 112457
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.||++|+|+|+++. ... ...+|+++|+||+|+.+...... ...+.++...++
T Consensus 69 ~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~-----------~~~~~~~~~~~~ 137 (168)
T d2gjsa1 69 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV-----------DEGRACAVVFDC 137 (168)
T ss_dssp HTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCH-----------HHHHHHHHHHTS
T ss_pred hhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhH-----------HHHHHHHHhcCC
Confidence 8899999999999986 011 23579999999999976432211 111111122367
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.||+++|+.+++.+..
T Consensus 138 ~~~e~Sak~~~~v~~~f~~l~~~i~~ 163 (168)
T d2gjsa1 138 KFIETSAALHHNVQALFEGVVRQIRL 163 (168)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999876543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=6.3e-22 Score=185.65 Aligned_cols=162 Identities=20% Similarity=0.140 Sum_probs=109.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee-CCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL-GDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+.|+|+|+||||||||+|+|++.+... .+.++ +|++...+...+ ++..+.+|||||+........ .....+..
T Consensus 2 ~~VaiiG~~nvGKSSLin~L~~~~~~~-~~~~~--~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~---~~~~~~l~ 75 (185)
T d1lnza2 2 ADVGLVGFPSVGKSTLLSVVSSAKPKI-ADYHF--TTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGV---GLGHQFLR 75 (185)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEE-SSTTS--SCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTT---TTHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCce-ecCCC--ceEeeeeceeEecCCcEEEEecCCCcccCchHHH---HHHHHHHH
Confidence 579999999999999999999988754 45555 666665555554 567899999999864332211 23345567
Q ss_pred HhhccCEEEEEEecCCCCCHh--HHH-HHHHHHhh----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC-CCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPL--DLE-VGKWLRKH----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG-FGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~--~~~-~~~~l~~~----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~-~~~~i~ 271 (607)
.+..++.++++++........ +.. ........ ..++|+++|+||+|+.... .........++ ..++++
T Consensus 76 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~ 151 (185)
T d1lnza2 76 HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFP 151 (185)
T ss_dssp HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCC
T ss_pred HHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEE
Confidence 788899999999876543322 211 11111111 2368999999999997632 11111222232 226799
Q ss_pred eecCCCCChHHHHHHhccchH
Q 007334 272 ISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+||++|.|+++|++.|.+.++
T Consensus 152 iSA~~g~Gi~~L~~~i~~~L~ 172 (185)
T d1lnza2 152 ISAVTREGLRELLFEVANQLE 172 (185)
T ss_dssp CSSCCSSTTHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhhh
Confidence 999999999999999988764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.1e-21 Score=178.91 Aligned_cols=156 Identities=19% Similarity=0.170 Sum_probs=114.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|++||.+|||||||+|+|++..+. ..... +..+........++ ..+.+|||+|.. .+.....
T Consensus 4 ~Ki~lvG~~~vGKTsLi~r~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~~ 69 (167)
T d1kaoa_ 4 YKVVVLGSGGVGKSALTVQFVTGTFI--EKYDP--TIEDFYRKEIEVDSSPSVLEILDTAGTE----------QFASMRD 69 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCCTT----------CCHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC--CccCC--ceeeeeeeeeecCcceEeeccccCCCcc----------ccccchH
Confidence 58999999999999999999987642 22222 33344333444444 578899999988 3344566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..||++++|+|++++.+..+.. +...+... .++.|+++|+||+|+...+.....+....+...+. +++++||+
T Consensus 70 ~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sak 148 (167)
T d1kaoa_ 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFMETSAK 148 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEEECTT
T ss_pred HHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCC-eEEEECCC
Confidence 7889999999999999876666522 32223322 35789999999999987766665665566666676 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++|+.|.+.+
T Consensus 149 ~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 149 SKTMVDELFAEIVRQM 164 (167)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999987654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.85 E-value=3.2e-22 Score=194.11 Aligned_cols=163 Identities=23% Similarity=0.255 Sum_probs=114.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEE------------------eeeCCeeEEEecCCCCc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGL------------------AKLGDLRFKVLDSAGLE 181 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~------------------~~~~~~~~~liDTpG~~ 181 (607)
.|.|+|+|++|+|||||+|+|++...+... ..+ +|....... +.+.+.++.++||||+.
T Consensus 5 ~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~ 81 (227)
T d1g7sa4 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE-AGG--ITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (227)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC-------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCEEEEEeCCCccHHHHHHHHHhhcchhee-cCc--eeeeccccccccccccccccccccceeeccccccccccccccee
Confidence 478999999999999999999986543211 111 222211111 23456689999999987
Q ss_pred cccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-------
Q 007334 182 TEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL------- 254 (607)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~------- 254 (607)
. +...+...+..+|++|+|+|+.+++..++.+++.++... ++|+|+|+||+|+........
T Consensus 82 ~----------f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~ 149 (227)
T d1g7sa4 82 A----------FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMET 149 (227)
T ss_dssp C----------CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred c----------ccccchhcccccceEEEEEecccCcccchhHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHh
Confidence 3 333334567889999999999999999999999999887 789999999999886442100
Q ss_pred ------------H----HHHHHHHhcC--------------CCCcEEeecCCCCChHHHHHHhccchHHHHhh
Q 007334 255 ------------A----GAAAESLMLG--------------FGDPIAISAETGLGMTELYEALRPSVEDYMLR 297 (607)
Q Consensus 255 ------------~----~~~~~~~~~~--------------~~~~i~iSA~~g~gi~eL~~~i~~~l~~~~~~ 297 (607)
. .........+ ..+++++||.+|.|+++|++.|....++++.+
T Consensus 150 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~ 222 (227)
T d1g7sa4 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE 222 (227)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 0011111111 12468999999999999999998877765543
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2e-21 Score=179.91 Aligned_cols=145 Identities=20% Similarity=0.200 Sum_probs=105.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. +.....++++.+.....+.+++.. +.+|||||..+. ... ...
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~---------~~~-~~~ 73 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF---------RSI-TQS 73 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG---------HHH-HGG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC-CCCcccccccceEEEEEEEECCEEEEEEEEECCCchhh---------HHH-HHH
Confidence 3799999999999999999999753 555566777777777778887764 568999995332 211 234
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++++|+|.++. .......|+|+|+||+|+.+..... +..+. + +...+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~--------~----~~~~~ 141 (171)
T d2ew1a1 74 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEE--------F----SEAQD 141 (171)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHH--------H----HHHHT
T ss_pred HHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHH--------H----HHhCC
Confidence 67889999999999875 1112468999999999987543221 11111 1 11236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++|||++|.||+++|..+++.+
T Consensus 142 ~~~~~~SAktg~gV~e~f~~l~~~l 166 (171)
T d2ew1a1 142 MYYLETSAKESDNVEKLFLDLACRL 166 (171)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEccCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999887654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=1.9e-21 Score=178.76 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=102.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+|+|++.. +.....|+...+........++. .+.+|||||..+.... ...
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~-~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~----------~~~ 70 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI----------TKA 70 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC----------CHH
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCC-CCcccccccccccceeeeeecCceeeeeeeccCCccchhhh----------hhh
Confidence 4799999999999999999999653 22223343444555555666664 5679999996554211 135
Q ss_pred HHhhccEEEEEeccchh-------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+++.+|++++|+|+++. .....++|+++|+||+|+.+.+.... +.. + ++. ...+++
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~--~~~-~----~~~----~~~~~~ 139 (164)
T d1z2aa1 71 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKN--EEA-E----GLA----KRLKLR 139 (164)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCH--HHH-H----HHH----HHHTCE
T ss_pred hhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeee--hhh-H----HHH----HHcCCE
Confidence 67899999999999876 11235899999999999976533211 111 1 111 112578
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|.||+++|+.|++.+
T Consensus 140 ~~e~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 140 FYRTSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEeccCCCcCHHHHHHHHHHHH
Confidence 99999999999999999988754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=7e-21 Score=176.12 Aligned_cols=148 Identities=21% Similarity=0.219 Sum_probs=104.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++.. ....+..|..+.....+.+++. .+.+|||+|..+.. .....
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~r~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~ 72 (171)
T d2erya1 5 KYRLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG----------AMREQ 72 (171)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CC----------HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--CCcccCcccccceeeeeeeccccccccccccccccccc----------ccccc
Confidence 3799999999999999999999753 2344555666777777777775 56799999965442 12235
Q ss_pred HHhhccEEEEEeccchh-----------h----HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------R----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~----~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.||++++|+|.+++ . ......|+|+|+||+|+........ +.. .++. ...+
T Consensus 73 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~--~~~-----~~~~----~~~~ 141 (171)
T d2erya1 73 YMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQ--EEG-----QQLA----RQLK 141 (171)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCH--HHH-----HHHH----HHTT
T ss_pred cccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchH--HHH-----HHHH----HHcC
Confidence 67789999999999876 1 1124689999999999976533211 111 1111 1236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
+++++|||++|.||+++|..|++.+.++
T Consensus 142 ~~~~e~Sak~~~~i~e~f~~l~~~i~k~ 169 (171)
T d2erya1 142 VTYMEASAKIRMNVDQAFHELVRVIRKF 169 (171)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 7999999999999999999999887654
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.3e-21 Score=176.06 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=103.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. ......++++.+.....+..++. .+.+|||||..+.. .....
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------~~~~~ 72 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKK-FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR----------AVTRS 72 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC----------HHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC-CCCcccccccccceeEEEEECCEEEEEEEeccCCchhHH----------HHHHH
Confidence 3799999999999999999999764 33344455566666666677776 66789999964331 12235
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++|+|+|.++. .......|+++++||+|+........ +.. +.++...++
T Consensus 73 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~--~~~---------~~~~~~~~~ 141 (166)
T d1z0fa1 73 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTY--EEA---------KQFAEENGL 141 (166)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH--HHH---------HHHHHHTTC
T ss_pred HhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHH--HHH---------HHHHHHcCC
Confidence 67789999999999876 11234689999999999865432211 111 111112367
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++|||++|.||+++|+.|.+.
T Consensus 142 ~~~e~Saktg~~v~e~f~~i~~~ 164 (166)
T d1z0fa1 142 LFLEASAKTGENVEDAFLEAAKK 164 (166)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999998775
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=7.6e-21 Score=175.70 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=112.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||++++++.++......+. ++.+.....+...+ ..+.+|||||++ .+...+
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~Dt~G~e----------~~~~~~ 73 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIST--VGIDFRNKVLDVDGVKVKLQMWDTAGQE----------RFRSVT 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCC--CSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccce--eeeeeEEEEEEecCcEEEEEEEECCCch----------hhHHHH
Confidence 4689999999999999999999876422211221 33444444455555 478899999998 455556
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HH-HHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VG-KWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~-~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|.++..+..... +. ...+......|+++|+||+|+........++........+. +++++||+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~-~~~e~Sak 152 (170)
T d2g6ba1 74 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFMETSAK 152 (170)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred HHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCC-EEEEEeCC
Confidence 66789999999999998866555422 22 22233345789999999999988766666666666677777 88999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++++.|.+.+
T Consensus 153 ~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 153 TGLNVDLAFTAIAKEL 168 (170)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHc
Confidence 9999999999998655
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1e-20 Score=175.02 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=115.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+|||.+|||||||++++++..+ ..+... +..+.....+..++ ..+.+|||+|.. ++.....
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f--~~~~~~--t~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~ 71 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYF--VTDYDP--TIEDSYTKQCVIDDRAARLDILDTAGQE----------EFGAMRE 71 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC--CSSCCT--TCCEEEEEEEEETTEEEEEEEEECC--------------CCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCc--ccccceeeeeeecccccccccccccccc----------ccccccc
Confidence 5899999999999999999998754 222222 44455555555555 479999999988 3344456
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHH-Hhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWL-RKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l-~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|.+++.+..... +...+ +.. ....|+|+|+||+|+...+....++....+...++ +++++||+
T Consensus 72 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak 150 (171)
T d2erya1 72 QYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKV-TYMEASAK 150 (171)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTC-EEEECBTT
T ss_pred ccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCC-EEEEEcCC
Confidence 6788999999999999876666522 22222 222 34689999999999987766666666667777777 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.||+++|+.|.+.+.+
T Consensus 151 ~~~~i~e~f~~l~~~i~k 168 (171)
T d2erya1 151 IRMNVDQAFHELVRVIRK 168 (171)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999877643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.84 E-value=6.9e-21 Score=176.79 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=109.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|++||++|||||||+|+|++.++..+....+ .....+...+..+.+|||+|.. .+...+..
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~------~~~~~i~~~~~~~~i~d~~g~~----------~~~~~~~~ 79 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG------FNIKSVQSQGFKLNVWDIGGQR----------KIRPYWRS 79 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT------EEEEEEEETTEEEEEEECSSCG----------GGHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCCcceeeee------eeEEEeccCCeeEeEeeccccc----------cchhHHHH
Confidence 4689999999999999999999987755544433 2334556688999999999988 45556678
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH--HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH--hcC--CCCcEEe
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL--MLG--FGDPIAI 272 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~~~--~~~~i~i 272 (607)
++..+|++++|+|+++..+..+.. +...+... ..++|+++|+||+|+...... ........ ... ..+++++
T Consensus 80 ~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T d1fzqa_ 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEIAEGLNLHTIRDRVWQIQSC 157 (176)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEEC
T ss_pred HhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccH--HHHHHHHHHHHHHhcCCEEEEE
Confidence 899999999999999876665521 11222211 346899999999999865331 11111111 111 1156899
Q ss_pred ecCCCCChHHHHHHhccc
Q 007334 273 SAETGLGMTELYEALRPS 290 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~ 290 (607)
||++|+|+++++++|.+.
T Consensus 158 SA~tg~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 158 SALTGEGVQDGMNWVCKN 175 (176)
T ss_dssp CTTTCTTHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHhc
Confidence 999999999999998764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.7e-21 Score=178.06 Aligned_cols=160 Identities=21% Similarity=0.222 Sum_probs=113.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+.+|++||.+|||||||+|++++....... .+. ++.+.....+..++ ..+.+|||||.+. +....
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~e~----------~~~~~ 70 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KST--IGVEFATRSIQVDGKTIKAQIWDTAGQER----------YRRIT 70 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CC--CSCEEEEEEEEETTEEEEEEEEECSSGGG----------TTCCC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcc-ccc--ccceeeeEEEEECCEEEEEEecccCCcHH----------HHHHH
Confidence 468999999999999999999987653222 222 33444444445555 4788999999873 22334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++|+|+|.+++.+.... .+...+.+. ..+.|+++|+||+|+........+.........+. +++++||+
T Consensus 71 ~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 149 (175)
T d2f9la1 71 SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETSAL 149 (175)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCc-eEEEEecC
Confidence 5567899999999999987655552 233333333 45689999999999987655544444444445554 78999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|.|++++++.+.+.+..
T Consensus 150 ~g~~i~e~f~~l~~~i~~ 167 (175)
T d2f9la1 150 DSTNVEEAFKNILTEIYR 167 (175)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999998877644
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=5.4e-21 Score=176.20 Aligned_cols=158 Identities=20% Similarity=0.224 Sum_probs=113.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+|||.+|||||||+|+|++.++. ..... ++............ ...+.+|||+|.. ++.....
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~~~f~--~~~~~-t~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~ 71 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVEDSFD--PNINP-TIGASFMTKTVQYQNELHKFLIWDTAGLE----------RFRALAP 71 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--TTCCC-CCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGTH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC--ccccc-ccccccccccccccccccceeeeecCCch----------hhhHHHH
Confidence 47999999999999999999987652 22221 01222222222222 3467899999998 3334455
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+..... +...+.. ...+.|+++|+||+|+...+.....+....+...+. +++++||++
T Consensus 72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SAk~ 150 (167)
T d1z0ja1 72 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETSAKN 150 (167)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred HHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCC-EEEEEecCC
Confidence 6789999999999998876665532 2222222 245789999999999987766666666666777777 789999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.||+++|..|.+.++
T Consensus 151 ~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 151 AININELFIEISRRIP 166 (167)
T ss_dssp TBSHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999999887653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.7e-21 Score=181.47 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=115.3
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHH
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
....+|+|+|.+|||||||+++|+...+ ..+... |+.+.....+...+ ..+.+|||+|++. +..
T Consensus 7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f--~~~~~~--Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~----------~~~ 72 (185)
T d2atxa1 7 ALMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVP--TVFDHYAVSVTVGGKQYLLGLYDTAGQED----------YDR 72 (185)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCC--SSCCCEEEEEESSSCEEEEEEECCCCSSS----------STT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHhhCCC--CCcCCC--ceeeeeeEEEeeCCceEEeecccccccch----------hhh
Confidence 3457899999999999999999998664 233222 34444444444444 5688999999983 223
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHH
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAES 261 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~ 261 (607)
....++..+|++++|+|++++.+.++. .+...++...++.|+++|+||+|+... +.+..++....+
T Consensus 73 ~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a 152 (185)
T d2atxa1 73 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA 152 (185)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred hhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHH
Confidence 344578899999999999987776542 244555555678999999999998752 223444445555
Q ss_pred HhcCCCCcEEeecCCCCChHHHHHHhccch
Q 007334 262 LMLGFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 262 ~~~~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
...+.-.++++||++|.||+++|+.+...+
T Consensus 153 ~~~~~~~~~E~SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 153 KEIGACCYVECSALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp HHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 566644779999999999999999887544
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4.3e-21 Score=177.51 Aligned_cols=143 Identities=18% Similarity=0.197 Sum_probs=101.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++.. ....+.+|..+........++. .+.+|||+|..... .....+
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~--f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----------~~~~~~ 70 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGT--FRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP----------AMQRLS 70 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCC--CCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH----------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCCccCcceeeccccceeeccccceecccccccccccc----------cccccc
Confidence 799999999999999999999753 2344555555655556666776 45679999964431 223457
Q ss_pred HhhccEEEEEeccchh-----------hH-----HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RA-----VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~-----~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
++.||++++|+|+++. .. ...++|+++|+||+|+.+..... +..+. + +...
T Consensus 71 ~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~--------~----~~~~ 138 (171)
T d2erxa1 71 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA--------L----ARTW 138 (171)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH--------H----HHHH
T ss_pred ccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHH--------H----HHHc
Confidence 7889999999999875 01 12468999999999986543221 11111 1 1123
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++++|||++|.||+++|+.|++.+
T Consensus 139 ~~~~~e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 139 KCAFMETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp TCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 67999999999999999999988753
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=1.4e-21 Score=180.54 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=100.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
-+||+++|.+|||||||+++|++.. +.....+..+.+.....+...+. .+.+|||||..+. ... ...
T Consensus 5 ~~Ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~---------~~~-~~~ 73 (169)
T d3raba_ 5 MFKILIIGNSSVGKTSFLFRYADDS-FTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY---------RTI-TTA 73 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG---------HHH-HHT
T ss_pred EEEEEEECCCCcCHHHHHHHHHcCC-CCcccccccccceeeEEEEeecceEEEEEEECCCchhh---------HHH-HHH
Confidence 3799999999999999999999764 22233333444444445555553 6779999995432 112 234
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.||++|+|+|+++. .......|+++|+||+|+.+..... +..+. + . ...+
T Consensus 74 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~----~----~----~~~~ 141 (169)
T d3raba_ 74 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQ----L----A----DHLG 141 (169)
T ss_dssp TTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHH----H----H----HHHT
T ss_pred HHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHH----H----H----HHcC
Confidence 67889999999999886 1112467899999999987543221 11111 1 1 1125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.||+++|+.+++.+.
T Consensus 142 ~~~~e~Sak~g~gv~e~f~~l~~~i~ 167 (169)
T d3raba_ 142 FEFFEASAKDNINVKQTFERLVDVIC 167 (169)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 78999999999999999999987653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=8.4e-21 Score=176.05 Aligned_cols=161 Identities=18% Similarity=0.160 Sum_probs=115.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
..+|+++|.+|||||||+|+|++.++... ..+. .+.+.....+.. ....+.+|||||+. ++...+
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~-~~~t--~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~ 71 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDD-SNHT--IGVEFGSKIINVGGKYVKLQIWDTAGQE----------RFRSVT 71 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCC--SEEEEEEEEEEETTEEEEEEEEEECCSG----------GGHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcc-cccc--cccceeeEEEEecCcceeEEEEECCCch----------hhhhhH
Confidence 35899999999999999999998764211 1222 222222222222 34578999999988 455566
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|.+++.+..... +...+.. ...+.|+++|+||+|+..............+...++ +++++||+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sak 150 (174)
T d2bmea1 72 RSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLETSAL 150 (174)
T ss_dssp HTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTT
T ss_pred HHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCC-EEEEeeCC
Confidence 77889999999999999876555422 2222222 245789999999999987666555555555566666 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|.|++++|+.|.+.+-+.
T Consensus 151 ~~~gi~e~f~~l~~~i~~~ 169 (174)
T d2bmea1 151 TGENVEEAFVQCARKILNK 169 (174)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 9999999999998876543
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=7e-21 Score=176.52 Aligned_cols=162 Identities=18% Similarity=0.185 Sum_probs=115.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+.+|++||.+|||||||++++++.+...... +. .+.+......... ...+.+|||+|.... ....
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~ 69 (173)
T d2a5ja1 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LT--IGVEFGARMVNIDGKQIKLQIWDTAGQESF----------RSIT 69 (173)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC--------CCSSEEEEEEEETTEEEEEEEECCTTGGGT----------SCCC
T ss_pred eEEEEEECCCCcCHHHHHHHHhcCCCCCCcc-cc--eeeccceeeeeeeeeEEEEEeecccCccch----------hhHH
Confidence 3589999999999999999999876533222 22 3333333333333 357899999999832 2334
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..++..+|++++|+|++++.+.... .+...+.+. ..+.|+++|+||+|+...+....+.....+...+. +++++||+
T Consensus 70 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~-~~~e~Sa~ 148 (173)
T d2a5ja1 70 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IFMETSAK 148 (173)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEECTT
T ss_pred HHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCC-EEEEecCC
Confidence 5567899999999999987666652 233333333 45789999999999887666666666666666776 78999999
Q ss_pred CCCChHHHHHHhccchHHHH
Q 007334 276 TGLGMTELYEALRPSVEDYM 295 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~~ 295 (607)
+|.|+++++..|.+.+.+.+
T Consensus 149 tg~~V~e~f~~i~~~i~~~~ 168 (173)
T d2a5ja1 149 TACNVEEAFINTAKEIYRKI 168 (173)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999988766543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=7.9e-21 Score=175.60 Aligned_cols=158 Identities=20% Similarity=0.235 Sum_probs=115.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|++||.+|||||||+++|++.++... ..+. .+.+......... ...+.+|||+|++ ++.....
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~f~~~-~~~t--~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~ 73 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQFHEF-QEST--IGAAFLTQTVCLDDTTVKFEIWDTAGQE----------RYHSLAP 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCC--SSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCcc-cccc--cccccccceeeccceEEEEEeccCCCch----------hhhhhHH
Confidence 5899999999999999999997764211 1121 2223322333333 3578999999998 3334455
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHH-HhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWL-RKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l-~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.+++.+|++++|+|.++..+..... +...+ +...++.|+++|+||+|+...+.+..+.........++ +++++||++
T Consensus 74 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~-~~~e~SAk~ 152 (170)
T d1r2qa_ 74 MYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMETSAKT 152 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred HHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCC-EEEEeeCCC
Confidence 6789999999999999876665532 33333 33356789999999999988776666666666666776 789999999
Q ss_pred CCChHHHHHHhccchH
Q 007334 277 GLGMTELYEALRPSVE 292 (607)
Q Consensus 277 g~gi~eL~~~i~~~l~ 292 (607)
|.||+++|+.|.+.+.
T Consensus 153 g~~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 153 SMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CTTHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.83 E-value=1.2e-20 Score=173.32 Aligned_cols=147 Identities=20% Similarity=0.197 Sum_probs=104.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.+|||||||+|+|.+..... .+.|.......+..++..+.+|||||...... ....++
T Consensus 2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~----------~~~~~~ 67 (165)
T d1ksha_ 2 ELRLLMLGLDNAGKTTILKKFNGEDVDT----ISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRS----------YWRNYF 67 (165)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCSS----CCCCSSEEEEEEEETTEEEEEEEECCSHHHHT----------TGGGGC
T ss_pred cEEEEEECCCCCCHHHHHHHHcCCCCCc----ccceEeeeeeeccccccceeeeecCcchhhhh----------HHHhhh
Confidence 4799999999999999999999764322 33444455556778899999999999644321 112355
Q ss_pred hhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..+|++++|+|+++. .....++|+++|+||+|+.+.....+.. ..+..........+
T Consensus 68 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~--------~~~~~~~~~~~~~~ 139 (165)
T d1ksha_ 68 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQ--------EALELDSIRSHHWR 139 (165)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHH--------HHTTGGGCCSSCEE
T ss_pred hhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHH--------HHHHhhhhhcCCCE
Confidence 679999999998864 1123578999999999997654322111 11111112233568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|+|++++|++|.+.+.
T Consensus 140 ~~~~Sa~~g~gv~e~~~~l~~~i~ 163 (165)
T d1ksha_ 140 IQGCSAVTGEDLLPGIDWLLDDIS 163 (165)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999887653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.8e-21 Score=177.16 Aligned_cols=145 Identities=20% Similarity=0.200 Sum_probs=102.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. ....+..+..+........++. .+.+|||+|..... .....
T Consensus 3 ~~Ki~lvG~~~vGKTsLi~r~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~----------~~~~~ 70 (167)
T d1kaoa_ 3 EYKVVVLGSGGVGKSALTVQFVTGT--FIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA----------SMRDL 70 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH----------HHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCC--CCCccCCceeeeeeeeeecCcceEeeccccCCCccccc----------cchHH
Confidence 4799999999999999999999764 2334444555555556666665 56689999954331 23345
Q ss_pred HHhhccEEEEEeccchh-----------h----HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------R----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~----~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.||++++|+|+++. . ....++|++||+||+|+.+...... +.. . .+. ...+
T Consensus 71 ~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~--~~~-~----~~~----~~~~ 139 (167)
T d1kaoa_ 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSS--SEG-R----ALA----EEWG 139 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCH--HHH-H----HHH----HHHT
T ss_pred HhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchH--HHH-H----HHH----HHcC
Confidence 77899999999999975 0 1124689999999999876433211 111 1 111 1125
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++|||++|.||+++|+.|++.+
T Consensus 140 ~~~~e~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 140 CPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp SCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcCHHHHHHHHHHHH
Confidence 7899999999999999999988754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=5.7e-21 Score=177.25 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=102.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---CCeeEEEecCCCCccccCchhHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---GDLRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
+++|++||.+|||||||+|+|++.++.... .+. .+.+........ ....+.+|||+|.+ +....
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~-~~t--~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~ 68 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQY-KAT--IGADFLTKEVTVDGDKVATMQVWDTAGQE----------RFQSL 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC------CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCcc-Ccc--cccceeeeeeeecCcccccceeeccCCch----------hhhhH
Confidence 468999999999999999999987642111 111 111222222221 23468999999987 44455
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-----CCCCcEEEEecCCCcccCCc-CcHHHHHHHHHhcCCCCc
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-----APQIKPIVAMNKCESLHNGT-GSLAGAAAESLMLGFGDP 269 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (607)
+..++..+|++++|+|++++.+..... +.+.+.+. ..+.|+++|+||+|+...+. .........+...+.-++
T Consensus 69 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 148 (175)
T d1ky3a_ 69 GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 148 (175)
T ss_dssp --CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred HHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeE
Confidence 566789999999999999877665422 22222221 23689999999999976543 333444444556665478
Q ss_pred EEeecCCCCChHHHHHHhccchH
Q 007334 270 IAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
+++||++|.|++++|+.|.+.+-
T Consensus 149 ~e~SA~~g~gv~e~f~~l~~~~l 171 (175)
T d1ky3a_ 149 FLTSAKNAINVDTAFEEIARSAL 171 (175)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999876543
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.83 E-value=7.5e-21 Score=175.48 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=100.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++.. ....+..|..+.+...+..++. .+.+|||+|..+.. .....+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~--f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~----------~~~~~~ 72 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA----------AIRDNY 72 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH----------HHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC--CCcccCCccccccccccccccccccccccccccccchh----------hhhhhc
Confidence 699999999999999999999753 2334444555555566667776 55689999964331 123456
Q ss_pred HhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|.++. ... ..+.|+++|+||+|+.+...... +.. + .+ +...++
T Consensus 73 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~--~~~-~----~~----~~~~~~ 141 (168)
T d1u8za_ 73 FRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSV--EEA-K----NR----ADQWNV 141 (168)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCH--HHH-H----HH----HHHHTC
T ss_pred ccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccH--HHH-H----HH----HHHcCC
Confidence 7889999999999876 111 24789999999999865432111 111 1 11 111257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.||+++|+.+++.+.
T Consensus 142 ~~~e~Sak~g~gv~e~f~~l~~~i~ 166 (168)
T d1u8za_ 142 NYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 8999999999999999999887653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=2.4e-21 Score=181.56 Aligned_cols=150 Identities=22% Similarity=0.296 Sum_probs=106.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEE-cCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEY-QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.|+|+|+||||||||+|+|++.+. .+.+.+++|++.......+ ++..+.+|||||+.+.... .. . ....+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~-~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~-~~-~-~~~~~l~~~~ 78 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ-GV-G-LGHQFLRHIE 78 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC-TT-T-THHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCCC-ceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchH-HH-H-HHHHHHHHHH
Confidence 599999999999999999999865 5667777777766665555 5678999999998654211 11 1 1245567778
Q ss_pred hccEEEEEeccchh--------------h-----HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCC
Q 007334 405 RAHVVALVLDAEEV--------------R-----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 405 ~ad~~llViD~~~~--------------~-----~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
.++.++++++.... . ....++|+++|+||+|+.+.. ...+ .+.+.+. .
T Consensus 79 ~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~---~~~~--------~~~~~~~--~ 145 (185)
T d1lnza2 79 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA---ENLE--------AFKEKLT--D 145 (185)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH---HHHH--------HHHHHCC--S
T ss_pred HhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH---HHHH--------HHHHHhc--c
Confidence 89999998876532 0 011368999999999997642 1112 1222222 3
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+.|++++||++|.|+++|++.|.+.++
T Consensus 146 ~~~v~~iSA~~g~Gi~~L~~~i~~~L~ 172 (185)
T d1lnza2 146 DYPVFPISAVTREGLRELLFEVANQLE 172 (185)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence 678999999999999999988876553
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.83 E-value=1e-20 Score=176.75 Aligned_cols=150 Identities=23% Similarity=0.267 Sum_probs=104.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+.+||+++|.+|||||||+++|.+.......++.+... ..+...+..+.+|||||....... ...+
T Consensus 16 k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 81 (182)
T d1moza_ 16 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQTSIRPY----------WRCY 81 (182)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC----CCTT----------GGGT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEE----EEEeeCCEEEEEEecccccccchh----------HHhh
Confidence 45899999999999999999999776555555544443 345678899999999997554211 1235
Q ss_pred HhhccEEEEEeccchh-----------h----HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------R----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~----~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++. . ....+.|++||+||+|+.+..... .+...+........++
T Consensus 82 ~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~--------~i~~~~~~~~~~~~~~ 153 (182)
T d1moza_ 82 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSAS--------EVSKELNLVELKDRSW 153 (182)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHH--------HHHHHTTTTTCCSSCE
T ss_pred hccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHH--------HHHHHHHHHHHhhCCC
Confidence 5689999999999875 0 012368999999999997643321 1122222222233456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
++++|||++|+|++++|++|.+.+.+.
T Consensus 154 ~~~e~SA~~g~gv~e~~~~l~~~i~~~ 180 (182)
T d1moza_ 154 SIVASSAIKGEGITEGLDWLIDVIKEE 180 (182)
T ss_dssp EEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 899999999999999999999887653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=7e-21 Score=175.42 Aligned_cols=157 Identities=20% Similarity=0.203 Sum_probs=112.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+|+|.+|||||||++++++..+. ..... +...+........++ ..+.+|||+|.. ++.....
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~~~f~--~~~~~-t~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~ 70 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCENKFN--DKHIT-TLGASFLTKKLNIGGKRVNLAIWDTAGQE----------RFHALGP 70 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCC--SSCCC-CCSCEEEEEEEESSSCEEEEEEEECCCC-----------------C
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--ccccc-ccccchheeeeccCCccceeeeeccCCcc----------eecccch
Confidence 68999999999999999999987653 22221 123333333444443 678999999988 4444555
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
.++..+|++++|+|++++.+..... +.+.+... ....|+++|+||+|+...+.+..++....+...++ +++++||++
T Consensus 71 ~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~-~~~e~Sak~ 149 (167)
T d1z08a1 71 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYHTSAKQ 149 (167)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEEBTTT
T ss_pred hhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCC-eEEEEecCC
Confidence 6789999999999999877766522 22222222 34678999999999988777777777777777887 789999999
Q ss_pred CCChHHHHHHhccch
Q 007334 277 GLGMTELYEALRPSV 291 (607)
Q Consensus 277 g~gi~eL~~~i~~~l 291 (607)
|.||+++|+.|.+.+
T Consensus 150 ~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 150 NKGIEELFLDLCKRM 164 (167)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999988755
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=5.9e-21 Score=177.68 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=112.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+|+|.+|||||||++++++..+. ..... +..+......... ...+.+|||+|++ .+...+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~ 68 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFP--EVYVP--TVFENYVADIEVDGKQVELALWDTAGLE----------DYDRLRP 68 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC--SSCCC--CSEEEEEEEEEETTEEEEEEEEEECCSG----------GGTTTGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--CCcCC--ceeeeccccccccccceeeeccccCccc----------hhcccch
Confidence 47999999999999999999987642 22221 2223333333333 3479999999998 3334456
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH--HHHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|++++.+.+.. .+...+....++.|+++|+||+|+...+ ....++....+...
T Consensus 69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 148 (177)
T d1kmqa_ 69 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI 148 (177)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHc
Confidence 678999999999999987766542 2445555556789999999999997532 22334444555566
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccch
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+.-+++++||++|.|++++|+.+.+.+
T Consensus 149 ~~~~~~E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 149 GAFGYMECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 654679999999999999999887543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=3.5e-21 Score=178.58 Aligned_cols=161 Identities=16% Similarity=0.239 Sum_probs=96.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+++|+++|.+|||||||+++|++..... ...+ +.+.+.....+..++ ..+.+|||||++ .+....
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~G~e----------~~~~~~ 72 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFIS--TIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTIT 72 (173)
T ss_dssp EEEEEEECCCCC-----------------CHHH--HHCEEEEEEEEEETTEEEEEEEEEC-------------------C
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCC-ccCc--cccceEEEEEEEECCEEEEEEEEECCCch----------hhHHHH
Confidence 4689999999999999999999865421 1112 244555555566555 467889999987 444555
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..+++.+|++|+|+|++++.+..... +...+... ..+.|+++|+||+|+........++....+...+. +++++||+
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 151 (173)
T d2fu5c1 73 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMETSAK 151 (173)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEECCC-
T ss_pred HHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCC-EEEEEeCC
Confidence 66789999999999999876665532 33444333 55789999999999988766655556666667777 78999999
Q ss_pred CCCChHHHHHHhccchHHH
Q 007334 276 TGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~~ 294 (607)
+|+|++++|+.|.+.+..+
T Consensus 152 ~g~gv~e~f~~l~~~i~~k 170 (173)
T d2fu5c1 152 ANINVENAFFTLARDIKAK 170 (173)
T ss_dssp --CCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999877654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=5.2e-21 Score=180.86 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=116.5
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+++|+|+|.+|||||||+++|++..... ...+...++.....-.+......+.+|||||++.. ...+..
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~----------~~~~~~ 74 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITSS 74 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCGG
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCC-CcCCccceeEEEEEEEEeeEEEEEEEEECCCchhh----------HHHHHH
Confidence 4789999999999999999999765321 11222112222222222234467899999999832 223445
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
+++.||++|+|+|++++.+..... +...+.+ ...+.|+++|+||+|+........+.........+. .++++||++|
T Consensus 75 ~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~e~SAk~g 153 (194)
T d2bcgy1 75 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLETSALDS 153 (194)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEECCTTTC
T ss_pred HhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCc-ceEEEecCcC
Confidence 788999999999999876666533 3344443 356789999999999988766666665666666666 7899999999
Q ss_pred CChHHHHHHhccchHHH
Q 007334 278 LGMTELYEALRPSVEDY 294 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~~ 294 (607)
.|++++++.|.+.+.+.
T Consensus 154 ~gi~e~f~~l~~~i~~~ 170 (194)
T d2bcgy1 154 TNVEDAFLTMARQIKES 170 (194)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999998776553
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=9.3e-21 Score=173.92 Aligned_cols=144 Identities=20% Similarity=0.212 Sum_probs=102.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++.. ......++++.+........++. .+.+|||+|..+.. .....+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~~~ 69 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFR----------SLIPSY 69 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGG----------GGHHHH
T ss_pred CEEEEECCCCcCHHHHHHHHHhCC-CCCccccceeeeccceeeccCCCceeeeecccCCcchhc----------cchHHH
Confidence 489999999999999999999764 44444555555555555555554 56799999975442 112357
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
+..+|++++|+|.++. .....+.|+++|+||+|+.+...... +. .+.++...+++
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~--~~---------~~~~~~~~~~~ 138 (164)
T d1yzqa1 70 IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSI--EE---------GERKAKELNVM 138 (164)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCH--HH---------HHHHHHHTTCE
T ss_pred hhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhH--HH---------HHHHHHHcCCE
Confidence 7899999999999886 11225789999999999975433211 11 11111223678
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++|||++|.||+++|+.|.+.
T Consensus 139 ~~e~SAk~g~~v~e~f~~i~~~ 160 (164)
T d1yzqa1 139 FIETSAKAGYNVKQLFRRVAAA 160 (164)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHh
Confidence 9999999999999999998875
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.9e-20 Score=172.74 Aligned_cols=144 Identities=21% Similarity=0.231 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||++++++.. + ...+..|..+.+...+..++. .+.+|||+|..... ....+
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~-f-~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-----------~~~~~ 69 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKR-F-IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-----------QREGH 69 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC-C-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-----------HHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-C-CCccCCceeccccccccccccceEEEEeecccccccc-----------cchhh
Confidence 799999999999999999999763 2 233443433334445556665 56799999954321 12346
Q ss_pred HhhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCc-hHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQN-SALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++.||++++|+|+++. .....+.|+++|+||+|+.+.... .+.... + +...+
T Consensus 70 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~--------~----a~~~~ 137 (168)
T d2atva1 70 MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK--------L----ATELA 137 (168)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH--------H----HHHHT
T ss_pred hcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHH--------H----HHHhC
Confidence 7789999999999986 011247899999999999654321 111111 1 11226
Q ss_pred CCEEEcccCCCC-CHHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGR-GRIAVMHQVIDTYQK 493 (607)
Q Consensus 467 ~~~v~iSA~~g~-gv~~l~~~i~~~~~~ 493 (607)
++++++||++|. ||+++|..+++.+.+
T Consensus 138 ~~~~e~Saktg~gnV~e~F~~l~~~i~~ 165 (168)
T d2atva1 138 CAFYECSACTGEGNITEIFYELCREVRR 165 (168)
T ss_dssp SEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred CeEEEEccccCCcCHHHHHHHHHHHHHH
Confidence 789999999998 599999999886654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.83 E-value=8.8e-21 Score=174.22 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=110.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+|+|.+|||||||+|+|.+.... ... .|.......+...+..+.+|||||+. .+......+
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~~~----~~~--~t~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~ 66 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGEDVD----TIS--PTLGFNIKTLEHRGFKLNIWDVGGQK----------SLRSYWRNY 66 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCCS----SCC--CCSSEEEEEEEETTEEEEEEEECCSH----------HHHTTGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCC----ccc--ceEeeeeeeccccccceeeeecCcch----------hhhhHHHhh
Confidence 47999999999999999999987542 222 45556666777889999999999987 444455667
Q ss_pred hhccCEEEEEEecCCCCCHhHH--HHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCC--CCcEEeecC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDL--EVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGF--GDPIAISAE 275 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~--~~~i~iSA~ 275 (607)
+..+|++++|+|+++..+..+. .+..++... ..+.|+++|+||+|+.................+.. ..++++||+
T Consensus 67 ~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (165)
T d1ksha_ 67 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAV 146 (165)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred hhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECC
Confidence 8899999999999886655542 233333322 35789999999999975433211111111111211 146899999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|+|+++++++|.+.+.
T Consensus 147 ~g~gv~e~~~~l~~~i~ 163 (165)
T d1ksha_ 147 TGEDLLPGIDWLLDDIS 163 (165)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=1.7e-20 Score=173.22 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=115.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|||||||++++++.... ..... +..+.....+..++ ..+.+|||+|... +.....
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~ 70 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFV--PDYDP--TIEDSYLKHTEIDNQWAILDVLDTAGQEE----------FSAMRE 70 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC--TTCCT--TCCEEEEEEEEETTEEEEEEEEECCSCGG----------GCSSHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--cccCc--ceeeccccccccccccccccccccccccc----------cccchh
Confidence 68999999999999999999986642 22111 22233333334444 5788999999983 333345
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.+++.+|++++|+|++++.+..... +...+.+. ..+.|+|+|+||+|+...+.+..++....+..+++ +++++||+
T Consensus 71 ~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~-~~~e~Sak 149 (169)
T d1x1ra1 71 QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI-PYIETSAK 149 (169)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred hhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCC-EEEEEcCC
Confidence 6789999999999999877766522 33333222 34789999999999988777776777777778887 88999999
Q ss_pred CCC-ChHHHHHHhccchH
Q 007334 276 TGL-GMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~-gi~eL~~~i~~~l~ 292 (607)
+|. ||+++|+.|.+.+.
T Consensus 150 ~~~~nV~~~F~~l~~~i~ 167 (169)
T d1x1ra1 150 DPPLNVDKTFHDLVRVIR 167 (169)
T ss_dssp SSCBSHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 886 99999999987654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2e-20 Score=172.33 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=112.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee--CCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL--GDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|++||.+|||||||++++++..+. ..... +..+.....+.. ....+.+|||+|+.. +...+.
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~ 69 (167)
T d1c1ya_ 4 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDP--TIEDSYRKQVEVDCQQCMLEILDTAGTEQ----------FTAMRD 69 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC--CSCCC--CSEEEEEEEEESSSCEEEEEEEEECSSCS----------STTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CccCC--ccccccceeEEeeeeEEEeccccccCccc----------cccccc
Confidence 57999999999999999999987652 22222 222222333333 345799999999983 233445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHh-h-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRK-H-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~-~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+.+... +...+.+ . .++.|+++|+||+|+........++....+...+.-+++++||+
T Consensus 70 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak 149 (167)
T d1c1ya_ 70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT
T ss_pred ccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCC
Confidence 6789999999999999877666632 3332222 2 35789999999999988766655555555555433378999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++|+.|.+.+
T Consensus 150 ~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 150 SKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999987654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=6.6e-21 Score=176.57 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=103.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++.........+.+..+.....+.+++.. +.+||++|.. +.+.+ ....+
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~------g~e~~---~~~~~ 74 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK------GENEW---LHDHC 74 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT------HHHHH---HHHCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccc------ccccc---ccccc
Confidence 7999999999999999999997654444455556667777777777764 5689987631 12222 22346
Q ss_pred HhhccEEEEEeccchhh-----------H----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR-----------A----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~-----------~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++|+|+|+++.. . ...++|+++|+||+|+.+...... +. .+.++...++
T Consensus 75 ~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~--~~---------~~~~a~~~~~ 143 (172)
T d2g3ya1 75 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV--SE---------GRACAVVFDC 143 (172)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH--HH---------HHHHHHHHTC
T ss_pred ccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccH--HH---------HHHHHHHcCC
Confidence 77899999999998760 1 124689999999999876532211 11 1111112367
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.||+++|+.+++.+..
T Consensus 144 ~~~e~Sak~g~~i~~~f~~l~~~i~~ 169 (172)
T d2g3ya1 144 KFIETSAAVQHNVKELFEGIVRQVRL 169 (172)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.1e-20 Score=170.83 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=111.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|++||.+|||||||+|+|++.... ..... +..+......... ...+.+||++|+. .+.....
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~l~~~d~~~~~----------~~~~~~~ 69 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDP--TIEDSYRKQVVIDGETCLLDILDTAGQE----------EYSAMRD 69 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC--CSCCC--CSEEEEEEEEEETTEEEEEEEEEECCCG----------GGHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--CccCC--ccceeeccceeeeceeeeeeeeeccCcc----------ccccchh
Confidence 57999999999999999999987642 22121 2222222222333 3568999999998 3445566
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..++++++|+|++++.+.+.. .+...+.+. ..+.|+++|+||+|+... ....++........++ +++++||+
T Consensus 70 ~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~e~Sak 147 (166)
T d1ctqa_ 70 QYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAAR-TVESRQAQDLARSYGI-PYIETSAK 147 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTC-CEEECCTT
T ss_pred hhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccc-cccHHHHHHHHHHhCC-eEEEEcCC
Confidence 788999999999999987666552 233333332 346899999999998654 3344555556666777 78999999
Q ss_pred CCCChHHHHHHhccchH
Q 007334 276 TGLGMTELYEALRPSVE 292 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~ 292 (607)
+|+|++++|+.|.+.+.
T Consensus 148 ~g~gi~e~f~~i~~~i~ 164 (166)
T d1ctqa_ 148 TRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999987664
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.3e-19 Score=166.61 Aligned_cols=144 Identities=23% Similarity=0.270 Sum_probs=100.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+|+|++.. . ...+..+..+.....+...+. .+.+||++|..... .....+
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----------~~~~~~ 71 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNH-F-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----------AMRDQY 71 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC-C-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH----------HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-CCccCCccceeeccceeeeceeeeeeeeeccCccccc----------cchhhh
Confidence 799999999999999999999764 2 233333444444444555555 45689999964431 123356
Q ss_pred HhhccEEEEEeccchhh---------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR---------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~~---------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++.+|++++|+|.++.. ....++|+++|+||+|+.......+..+.+ .+ ..++
T Consensus 72 ~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~--------~~~~ 139 (166)
T d1ctqa_ 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDL----AR--------SYGI 139 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHH----HH--------HHTC
T ss_pred hhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHH----HH--------HhCC
Confidence 77899999999999860 012468999999999997653222221111 11 1257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.||+++|..|++.+.
T Consensus 140 ~~~e~Sak~g~gi~e~f~~i~~~i~ 164 (166)
T d1ctqa_ 140 PYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 8999999999999999999987664
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.9e-20 Score=169.88 Aligned_cols=157 Identities=22% Similarity=0.241 Sum_probs=112.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|++||.+|||||||++++++..+. ..... |..+........++ ..+.+|||+|.... ....
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~f~--~~~~p--Ti~~~~~~~~~~~~~~~~l~i~D~~g~~~~-----------~~~~ 67 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKRFI--WEYDP--TLESTYRHQATIDDEVVSMEILDTAGQEDT-----------IQRE 67 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCT--TCCEEEEEEEEETTEEEEEEEEECCCCCCC-----------HHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--CccCC--ceeccccccccccccceEEEEeeccccccc-----------ccch
Confidence 47999999999999999999987642 22221 22222222333344 57899999998721 1234
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHh--hCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRK--HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~--~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..... +..++.. ...+.|+++|+||+|+...+.+..++....+...++ +++++||+
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~-~~~e~Sak 146 (168)
T d2atva1 68 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFYECSAC 146 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEEECCTT
T ss_pred hhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCC-eEEEEccc
Confidence 5678899999999999877666633 2233322 245789999999999987766666666666777787 78999999
Q ss_pred CCCC-hHHHHHHhccchHH
Q 007334 276 TGLG-MTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~g-i~eL~~~i~~~l~~ 293 (607)
+|.| |+++|..|.+.+..
T Consensus 147 tg~gnV~e~F~~l~~~i~~ 165 (168)
T d2atva1 147 TGEGNITEIFYELCREVRR 165 (168)
T ss_dssp TCTTCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHH
Confidence 9985 99999998876543
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=5.6e-21 Score=176.01 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=100.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeE--EEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRT--VYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. + ...+..|..+.+...+.+++.. +.+|||+|..++... ...
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~----------~~~ 71 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVEGQ-F-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF----------PQT 71 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-C-CSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----------CGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCC-C-CcccCcceecccceEEecCcEEEEeeecccccccccccc----------cch
Confidence 4799999999999999999999753 2 2233333333344566777764 558999997654211 113
Q ss_pred HHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++|+|+|+++. .. ...+.|+++|+||+|+....... .+.. +.++...+
T Consensus 72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~--~~~~---------~~~a~~~~ 140 (167)
T d1xtqa1 72 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS--YEEG---------KALAESWN 140 (167)
T ss_dssp GTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSC--HHHH---------HHHHHHHT
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchh--HHHH---------HHHHHHcC
Confidence 45689999999999986 01 12468999999999986543211 1111 11111236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.||+++|+.+++.++
T Consensus 141 ~~~~e~Sak~~~~v~~~f~~li~~~~ 166 (167)
T d1xtqa1 141 AAFLESSAKENQTAVDVFRRIILEAE 166 (167)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999999987654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.2e-20 Score=174.29 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=101.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++.........+.++.+.....+..++. .+.||||||..+... ....
T Consensus 6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~----------~~~~ 75 (170)
T d2g6ba1 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS----------VTHA 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------C
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHH----------HHHH
Confidence 4799999999999999999999765332222333445555556667776 567999999654421 1123
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++++|+|.++. .......|+++|+||+|+.+...... +.. ..+ . ...++
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~--~~~-~~~----~----~~~~~ 144 (170)
T d2g6ba1 76 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR--EDG-EKL----A----KEYGL 144 (170)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCH--HHH-HHH----H----HHHTC
T ss_pred hhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccH--HHH-HHH----H----HHcCC
Confidence 56789999999999876 11124679999999999887543221 111 111 1 11257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.||+++|+.|++.+.
T Consensus 145 ~~~e~Sak~g~gi~e~f~~l~~~i~ 169 (170)
T d2g6ba1 145 PFMETSAKTGLNVDLAFTAIAKELK 169 (170)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHcC
Confidence 9999999999999999999987653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=1.2e-20 Score=173.74 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=98.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceee-eEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRD-SVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~-~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
.+||+++|.+|||||||+++|++.. +. ..+..|+.+ ........++. .+.+|||+|..+... ...
T Consensus 4 ~~Ki~lvG~~~vGKTsli~rl~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~ 71 (167)
T d1z0ja1 4 ELKVCLLGDTGVGKSSIMWRFVEDS-FD-PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA----------LAP 71 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC-CC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG----------GTH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCC-CC-cccccccccccccccccccccccceeeeecCCchhhhH----------HHH
Confidence 4799999999999999999999764 32 233333333 32333444443 567999999655421 123
Q ss_pred HHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 401 KNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
.+++.+|++|+|+|.++. .......|+++|+||+|+.+...... +.. .++. ...+
T Consensus 72 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~--~~~-----~~~~----~~~~ 140 (167)
T d1z0ja1 72 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME--RDA-----KDYA----DSIH 140 (167)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH--HHH-----HHHH----HHTT
T ss_pred HHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhH--HHH-----HHHH----HHcC
Confidence 567889999999999876 11235789999999999975432211 111 1111 2236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++++|||++|.||+++|..|.+.+
T Consensus 141 ~~~~e~SAk~~~nV~e~f~~l~~~i 165 (167)
T d1z0ja1 141 AIFVETSAKNAININELFIEISRRI 165 (167)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CEEEEEecCCCCCHHHHHHHHHHhC
Confidence 7899999999999999999987753
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=9.6e-21 Score=174.43 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=112.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+|+|.+|||||||+++|++..+. ..... +..+.....+.+++ ..+.+|||+|..... ....
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~----------~~~~ 70 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFV--DSYDP--TIENTFTKLITVNGQEYHLQLVDTAGQDEYS----------IFPQ 70 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC--SCCCS--SCCEEEEEEEEETTEEEEEEEEECCCCCTTC----------CCCG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC--cccCc--ceecccceEEecCcEEEEeeecccccccccc----------cccc
Confidence 48999999999999999999976642 22111 22222233444555 467889999998432 2223
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
.++..+|++++|+|++++.+..... +...+.+. ..+.|+++|+||+|+...+.+..++....+..++. .++++||+
T Consensus 71 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~e~Sak 149 (167)
T d1xtqa1 71 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLESSAK 149 (167)
T ss_dssp GGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECCTT
T ss_pred hhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCC-EEEEEecC
Confidence 4678999999999999877776532 22223222 34789999999999988766666666666667776 78999999
Q ss_pred CCCChHHHHHHhccch
Q 007334 276 TGLGMTELYEALRPSV 291 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l 291 (607)
+|.|++++|+.|...+
T Consensus 150 ~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 150 ENQTAVDVFRRIILEA 165 (167)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999887554
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.82 E-value=5e-20 Score=170.62 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=104.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+.+||+++|.+|||||||+++|++.......+ |..............+.+|||||..... .....+
T Consensus 11 k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~ 76 (173)
T d1e0sa_ 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQDKIR----------PLWRHY 76 (173)
T ss_dssp CCEEEEEEEETTSSHHHHHHHTTCCCCEEEEE----ETTEEEEEEEETTEEEEEEEESCCGGGH----------HHHGGG
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCccc----eeeeeEEEeeccceeeEEecCCCcchhh----------hHHHhh
Confidence 35899999999999999999999765444333 3333344556778899999999965432 123356
Q ss_pred HhhccEEEEEeccchh-----------h----HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV-----------R----AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~-----------~----~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|+++. . .....+|+++|+||+|+.+.....+ +...+.........+
T Consensus 77 ~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~--------i~~~~~~~~~~~~~~ 148 (173)
T d1e0sa_ 77 YTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE--------IQEKLGLTRIRDRNW 148 (173)
T ss_dssp TTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH--------HHHHTTGGGCCSSCE
T ss_pred hcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHH--------HHHHHHHHHHHhCCC
Confidence 7789999999999875 0 1124789999999999976533211 112222222333456
Q ss_pred CEEEcccCCCCCHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++++||++|+||+++|++|.+.
T Consensus 149 ~~~e~SA~tg~gv~e~~~~l~~~ 171 (173)
T d1e0sa_ 149 YVQPSCATSGDGLYEGLTWLTSN 171 (173)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHH
T ss_pred EEEEeeCCCCcCHHHHHHHHHHh
Confidence 79999999999999999998764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.4e-21 Score=177.39 Aligned_cols=156 Identities=17% Similarity=0.201 Sum_probs=107.6
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
++|+++|.+|||||||++++++..+. ..... ++..+.....+..+ ...+.+|||+|.. .+.....
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~f~--~~~~~-Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~ 70 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGEFE--KKYVA-TLGVEVHPLVFHTNRGPIKFNVWDTAGQE----------KFGGLRD 70 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC-------CCEEE-ETTEEEEEEEECBTTCCEEEEEEECTTHH----------HHSSCGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--ccccc-ceecccccccccccccccccccccccccc----------ccceecc
Confidence 58999999999999999999987542 11110 12223333333333 4679999999987 3334445
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
.++..+|++++|+|++++.+..... +...+.+..++.|+++|+||+|+....... +....+...++ +++++||++|
T Consensus 71 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~--~~~~~~~~~~~-~~~e~Sak~~ 147 (170)
T d1i2ma_ 71 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNL-QYYDISAKSN 147 (170)
T ss_dssp GGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTT--TSHHHHSSCSS-EEEEEBTTTT
T ss_pred hhcccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhh--HHHHHHHHcCC-EEEEEeCCCC
Confidence 6788999999999999987766522 333333334589999999999998765432 22334445555 6799999999
Q ss_pred CChHHHHHHhccchH
Q 007334 278 LGMTELYEALRPSVE 292 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~ 292 (607)
.|++++|+.|.+.+.
T Consensus 148 ~~v~e~f~~l~~~l~ 162 (170)
T d1i2ma_ 148 YNFEKPFLWLARKLI 162 (170)
T ss_dssp BTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc
Confidence 999999999987653
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.8e-20 Score=172.74 Aligned_cols=146 Identities=17% Similarity=0.223 Sum_probs=102.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++.. ......++++.+.....+..++. .+.||||||..++... ....
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~----------~~~~ 73 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTRNE-FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI----------TSAY 73 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC-CCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC----------CHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHH----------HHHH
Confidence 799999999999999999999764 33334455555555666677775 5669999996544211 1245
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++|+|+|.+++ .....+.|+++|+||+|+.+......... . ... ...+.+
T Consensus 74 ~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~---~----~~~----~~~~~~ 142 (175)
T d2f9la1 74 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEA---R----AFA----EKNNLS 142 (175)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH---H----HHH----HHTTCE
T ss_pred hhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHH---H----Hhh----cccCce
Confidence 6789999999999886 11124689999999999976432221110 0 111 123578
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++||++|.|++++|+.+.+.+.
T Consensus 143 ~~e~Sa~~g~~i~e~f~~l~~~i~ 166 (175)
T d2f9la1 143 FIETSALDSTNVEEAFKNILTEIY 166 (175)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999887653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=3.5e-20 Score=171.09 Aligned_cols=145 Identities=21% Similarity=0.241 Sum_probs=102.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++.. .. ..+..+..+.....+..++. .+.+|||+|...... ....
T Consensus 4 t~Ki~lvG~~~vGKTsll~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~ 71 (169)
T d1x1ra1 4 TYKLVVVGDGGVGKSALTIQFFQKI-FV-PDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA----------MREQ 71 (169)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS-CC-TTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS----------SHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC-CC-cccCcceeecccccccccccccccccccccccccccc----------chhh
Confidence 3799999999999999999999753 22 23333444445555666665 556999999755421 1245
Q ss_pred HHhhccEEEEEeccchh-----------h---H-HhcCCcEEEEEeCccCCCCcCch-HHHHHHHHhcHHHHHhhCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------R---A-VEEGRGLVVIVNKMDLLSGRQNS-ALYKRVKEAVPQEIQTVIPQVT 465 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~---~-~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (607)
+++.||++++|+|+++. . . ...+.|+|+|+||+|+.+..... +.... + +...
T Consensus 72 ~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~--------~----~~~~ 139 (169)
T d1x1ra1 72 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE--------M----ATKY 139 (169)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH--------H----HHHH
T ss_pred hhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHH--------H----HHHc
Confidence 77899999999999986 1 1 12478999999999998764321 11111 1 1122
Q ss_pred CCCEEEcccCCCC-CHHHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGR-GRIAVMHQVIDTYQ 492 (607)
Q Consensus 466 ~~~~v~iSA~~g~-gv~~l~~~i~~~~~ 492 (607)
+++++++||++|. ||+++|..+++.+.
T Consensus 140 ~~~~~e~Sak~~~~nV~~~F~~l~~~i~ 167 (169)
T d1x1ra1 140 NIPYIETSAKDPPLNVDKTFHDLVRVIR 167 (169)
T ss_dssp TCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcCHHHHHHHHHHHHH
Confidence 6789999999986 99999999988664
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.9e-20 Score=171.33 Aligned_cols=161 Identities=19% Similarity=0.189 Sum_probs=113.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
.++|+++|.+|||||||+|++++.........+. +..+.....+..++ ..+.+||++|.... .++ ..
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~-------e~~--~~ 71 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV--LGEDTYERTLMVDGESATIILLDMWENKGE-------NEW--LH 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-----CCTTEEEEEEEETTEEEEEEEECCTTTTHH-------HHH--HH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccc--eeeecceeeeccCCceeeeeeecccccccc-------ccc--cc
Confidence 4689999999999999999999865433332222 33344444455544 45788898765310 022 34
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeec
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISA 274 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA 274 (607)
..++..+|++|+|+|+++..+.... .+...+... .++.|+++|+||+|+...+....++....+...++ +++++||
T Consensus 72 ~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~Sa 150 (172)
T d2g3ya1 72 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFIETSA 150 (172)
T ss_dssp HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBT
T ss_pred cccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCC-eEEEEeC
Confidence 4578899999999999986665542 233333332 34789999999999988766666665556666777 7899999
Q ss_pred CCCCChHHHHHHhccchH
Q 007334 275 ETGLGMTELYEALRPSVE 292 (607)
Q Consensus 275 ~~g~gi~eL~~~i~~~l~ 292 (607)
++|.|++++|+.|.+.+.
T Consensus 151 k~g~~i~~~f~~l~~~i~ 168 (172)
T d2g3ya1 151 AVQHNVKELFEGIVRQVR 168 (172)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 999999999999987664
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.8e-20 Score=171.42 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=102.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.||+++|.+|||||||+++|++.. + ...+.+|..+........++. .+.||||||....... ...+
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~----------~~~~ 70 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQ-F-PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL----------RPLS 70 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC-C-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT----------GGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-C-CCCcCCceeeeccccccccccceeeeccccCccchhccc----------chhh
Confidence 589999999999999999999764 2 233334444555555556555 5779999997554211 1245
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHH-HhcHHHHHhhCCC-CCC
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVK-EAVPQEIQTVIPQ-VTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 466 (607)
++.+|++|+|+|.++. .....+.|++||+||+|+.+............ +.+..+..+.++. ...
T Consensus 71 ~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 150 (177)
T d1kmqa_ 71 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 150 (177)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTC
T ss_pred cccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCC
Confidence 7789999999999976 11224789999999999976532111110000 1111111212211 223
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
.++++|||++|.||+++|+.+.+.+
T Consensus 151 ~~~~E~SAkt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 151 FGYMECSAKTKDGVREVFEMATRAA 175 (177)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcCHHHHHHHHHHHH
Confidence 6899999999999999999988754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3.4e-20 Score=171.92 Aligned_cols=146 Identities=19% Similarity=0.176 Sum_probs=100.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. +.....+..+.......+..++. .+.+|||||..++. .....
T Consensus 5 ~~KI~lvG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~ 73 (174)
T d2bmea1 5 LFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR----------SVTRS 73 (174)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH----------HHHHT
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC-CCcccccccccceeeEEEEecCcceeEEEEECCCchhhh----------hhHHH
Confidence 3799999999999999999999764 33333333333333333444443 67799999964431 12345
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchH-HHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSA-LYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|.++. .....++|+++|+||+|+........ ... .+. ...+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~--------~~~----~~~~ 141 (174)
T d2bmea1 74 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS--------RFA----QENE 141 (174)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHH--------HHH----HHTT
T ss_pred HhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHH--------HHH----HhCC
Confidence 67789999999999876 11124789999999999865433211 111 111 1236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|..+.+.+.
T Consensus 142 ~~~~e~Sak~~~gi~e~f~~l~~~i~ 167 (174)
T d2bmea1 142 LMFLETSALTGENVEEAFVQCARKIL 167 (174)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEeeCCCCcCHHHHHHHHHHHHH
Confidence 79999999999999999999887643
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.2e-20 Score=177.08 Aligned_cols=157 Identities=19% Similarity=0.199 Sum_probs=104.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
..+||+++|.+|||||||+++|+... ....+..|+.+.....+..++. .+.+|||+|....... ..
T Consensus 8 ~~~Ki~lvG~~~vGKTsLi~r~~~~~--f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~----------~~ 75 (185)
T d2atxa1 8 LMLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL----------RP 75 (185)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT----------GG
T ss_pred cEEEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhh----------hh
Confidence 35899999999999999999999753 2344555656666666666665 4569999997554211 12
Q ss_pred HHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCCC-C
Q 007334 401 KNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIPQ-V 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~ 464 (607)
.+++.+|++++|+|+++. .....+.|+++|+||+|+.+........... .+.+..+..+.++. .
T Consensus 76 ~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~ 155 (185)
T d2atxa1 76 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 155 (185)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred hcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHc
Confidence 456789999999999975 1223578999999999998642111000000 01111111111111 1
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..+++++|||++|.||+++|+.+++.+
T Consensus 156 ~~~~~~E~SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 156 GACCYVECSALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 246899999999999999999987754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.9e-20 Score=172.27 Aligned_cols=145 Identities=20% Similarity=0.146 Sum_probs=99.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||++||.+|||||||++++++.. ......++.+.+.........+. .+.+|||+|...... ....+
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~~~~ 72 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS----------ITRSY 72 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC-CCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC----------CCHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhcCC-CCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhh----------HHHHH
Confidence 699999999999999999999764 33334445555555555555554 667999999654421 12356
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchH-HHHHHHHhcHHHHHhhCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSA-LYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+..+|++++|+|.++. .....++|++||+||+|+........ .... + +...++
T Consensus 73 ~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~----~--------a~~~~~ 140 (173)
T d2a5ja1 73 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEA----F--------AREHGL 140 (173)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHH----H--------HHHHTC
T ss_pred hhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHH----H--------HHHcCC
Confidence 6789999999999886 11125789999999999865432211 1111 1 111257
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++++||++|.||+++|..+.+.+.
T Consensus 141 ~~~e~Sa~tg~~V~e~f~~i~~~i~ 165 (173)
T d2a5ja1 141 IFMETSAKTACNVEEAFINTAKEIY 165 (173)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999988653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=2.6e-20 Score=175.97 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=101.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
-+||+|+|.+|||||||+++|++.. ......++++.......+.+++. .+.||||||..++... ...
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~----------~~~ 74 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI----------TSS 74 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC----------CGG
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCC-CCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHH----------HHH
Confidence 3799999999999999999999764 22222233333333344555554 6678999997654211 123
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.||++|+|+|+++. .......|+++|+||+|+.+....... ....++...++
T Consensus 75 ~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~-----------~~~~~~~~~~~ 143 (194)
T d2bcgy1 75 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYD-----------VAKEFADANKM 143 (194)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH-----------HHHHHHHHTTC
T ss_pred HhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHH-----------HHhhhhhccCc
Confidence 56789999999999875 112346799999999999875432211 11111112367
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.||+++|+.+++.+.+
T Consensus 144 ~~~e~SAk~g~gi~e~f~~l~~~i~~ 169 (194)
T d2bcgy1 144 PFLETSALDSTNVEDAFLTMARQIKE 169 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ceEEEecCcCccHHHHHHHHHHHHHH
Confidence 89999999999999999999876543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.81 E-value=1.1e-19 Score=166.72 Aligned_cols=144 Identities=18% Similarity=0.139 Sum_probs=103.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+||+++|++|||||||+++|.+.. +.....| |.......+..++..+.+|||||..... .....++.
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~-~~~~~~~--T~~~~~~~~~~~~~~~~i~D~~G~~~~~----------~~~~~~~~ 69 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQ-FNEDMIP--TVGFNMRKITKGNVTIKLWDIGGQPRFR----------SMWERYCR 69 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCCSCCC--CCSEEEEEEEETTEEEEEEEECCSHHHH----------TTHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC-CCCcccc--cceeeeeeeeeeeEEEEEeecccccccc----------cccccccc
Confidence 799999999999999999999764 2222222 3333445667889999999999954331 12245678
Q ss_pred hccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
.+|++++|+|+++. .....++|+++|+||+|+.+.....+. .+.+........+.++
T Consensus 70 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i--------~~~~~~~~~~~~~~~~ 141 (164)
T d1zd9a1 70 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKEL--------IEKMNLSAIQDREICC 141 (164)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHH--------HHHTTGGGCCSSCEEE
T ss_pred ccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHH--------HHHHHHHHHHhCCCEE
Confidence 99999999999875 011247899999999999765432221 1222223333456789
Q ss_pred EEcccCCCCCHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++||++|.|++++|++|++
T Consensus 142 ~e~Sa~~g~gv~e~~~~l~~ 161 (164)
T d1zd9a1 142 YSISCKEKDNIDITLQWLIQ 161 (164)
T ss_dssp EECCTTTCTTHHHHHHHHHH
T ss_pred EEEeCcCCcCHHHHHHHHHH
Confidence 99999999999999998876
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.5e-20 Score=174.80 Aligned_cols=148 Identities=24% Similarity=0.236 Sum_probs=99.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC------------eEEEEEecCCCcccccccCc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG------------RTVYLVDTAGWLQREKEKGP 391 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~------------~~~~liDTpG~~~~~~~~~~ 391 (607)
.+||+++|.+|||||||+++|++.. ......+..+.+.....+.+++ ..+.+|||||..
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e-------- 75 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNK-FNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------- 75 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC-CCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCC-CCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcch--------
Confidence 4799999999999999999999764 2222223333333333333322 467899999943
Q ss_pred chhHHHHHHHHHhhccEEEEEeccchhh---------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 392 ASLSVMQSRKNLMRAHVVALVLDAEEVR---------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 392 ~~~~~~~~~~~i~~ad~~llViD~~~~~---------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
.+... ...++++||++|+|+|+++.. ......|+++|+||+|+........ +
T Consensus 76 -~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~-----------~ 142 (186)
T d2f7sa1 76 -RFRSL-TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE-----------R 142 (186)
T ss_dssp -HHHHH-HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCH-----------H
T ss_pred -hhHHH-HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchH-----------H
Confidence 22222 234678999999999998861 1123578999999999975432211 1
Q ss_pred HHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 457 IQTVIPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
..+.++...+++++++||++|.||+++|+.+.+.+.+
T Consensus 143 e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~ 179 (186)
T d2f7sa1 143 QARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 179 (186)
T ss_dssp HHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1111112236799999999999999999999987543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.7e-20 Score=172.88 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=99.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. +.....|....+.....+..++. .+.+|||+|..+... ....
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~ 71 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA----------LGPI 71 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CC
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCC-CCcccccccccchheeeeccCCccceeeeeccCCcceecc----------cchh
Confidence 3799999999999999999999753 33333443444444445555554 667999999654421 1123
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++++|++++|+|+++. .......|+++|+||+|+.+.+.... +. .+.++...++
T Consensus 72 ~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~--~e---------~~~~a~~~~~ 140 (167)
T d1z08a1 72 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSI--QE---------AESYAESVGA 140 (167)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCH--HH---------HHHHHHHTTC
T ss_pred hccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccch--HH---------HHHHHHHcCC
Confidence 56789999999999976 11235678999999999976533211 11 1111122367
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++|||++|.||+++|..|++.+
T Consensus 141 ~~~e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 141 KHYHTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eEEEEecCCCcCHHHHHHHHHHHH
Confidence 999999999999999999988754
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=5.1e-20 Score=170.05 Aligned_cols=144 Identities=17% Similarity=0.147 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++.. +.....+..+.+.....+...+. .+.+|||||..+.. .. ...+
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~-~~~~ 75 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKGQ-FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH---------SL-APMY 75 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---------GG-HHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCcccccccccccccceeeccceEEEEEeccCCCchhhh---------hh-HHHH
Confidence 799999999999999999999764 33333333344444445555554 56799999964431 11 2356
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|.++. .....+.|+++|+||+|+........ +..+.++...+++
T Consensus 76 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~-----------e~~~~~~~~~~~~ 144 (170)
T d1r2qa_ 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDF-----------QEAQSYADDNSLL 144 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH-----------HHHHHHHHHTTCE
T ss_pred hhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccH-----------HHHHHHHHhcCCE
Confidence 7899999999999875 11234789999999999876533211 1111111223679
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
++++||++|.||+++|+.|.+.
T Consensus 145 ~~e~SAk~g~~V~e~f~~l~~~ 166 (170)
T d1r2qa_ 145 FMETSAKTSMNVNEIFMAIAKK 166 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHT
T ss_pred EEEeeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1e-19 Score=170.18 Aligned_cols=157 Identities=18% Similarity=0.224 Sum_probs=103.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSR 400 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~ 400 (607)
+.+||+++|.+|||||||+++|++.. ....+..|..+.....+..++. .+.+||++|...... . ..
T Consensus 4 ~~iKivviG~~~vGKTsli~~~~~~~--f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~---------~-~~ 71 (183)
T d1mh1a_ 4 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR---------L-RP 71 (183)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS--CCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT---------T-GG
T ss_pred eeEEEEEECCCCCCHHHHHHHHHhCC--CCcccccceeeceeeeeeccCcceEEEeecccccccchh---------h-hh
Confidence 45899999999999999999999764 2344455555666556666665 456999999654421 1 12
Q ss_pred HHHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHH-HHHhcHHHHHhhC-CCC
Q 007334 401 KNLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKR-VKEAVPQEIQTVI-PQV 464 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 464 (607)
.+++.+|++++|+|+++. .....++|++||+||+|+.+.......... ............+ ...
T Consensus 72 ~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 151 (183)
T d1mh1a_ 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (183)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHc
Confidence 356789999999999975 112347899999999998765211100000 0000001111111 112
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
..+++++|||++|.||+++|..+++.+
T Consensus 152 ~~~~~~E~SAk~~~~V~e~F~~l~~~i 178 (183)
T d1mh1a_ 152 GAVKYLECSALTQRGLKTVFDEAIRAV 178 (183)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCcCHHHHHHHHHHHH
Confidence 347899999999999999999888753
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.81 E-value=1e-19 Score=166.88 Aligned_cols=153 Identities=14% Similarity=0.052 Sum_probs=109.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+++|.+|||||||+|+|++.++. .+.. .|.......+..++..+.+|||||+. .+...+..+
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~--~~~~---~T~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~ 67 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFN--EDMI---PTVGFNMRKITKGNVTIKLWDIGGQP----------RFRSMWERY 67 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--CSCC---CCCSEEEEEEEETTEEEEEEEECCSH----------HHHTTHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC--Cccc---ccceeeeeeeeeeeEEEEEeeccccc----------ccccccccc
Confidence 47999999999999999999987642 2222 45555666777889999999999987 455566778
Q ss_pred hhccCEEEEEEecCCCCCHhHHH--HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCcEEe
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDPIAI 272 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~i~i 272 (607)
+..+|++++|+|+++..+..... +...++.. .++.|+++|+||+|+..... ......... ..+. .++++
T Consensus 68 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~-~~~e~ 144 (164)
T d1zd9a1 68 CRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIEKMNLSAIQDREI-CCYSI 144 (164)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEEEC
T ss_pred ccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHHHHHHHHHHhCCC-EEEEE
Confidence 89999999999998765554421 22222221 35789999999999875432 121111111 1111 56899
Q ss_pred ecCCCCChHHHHHHhccch
Q 007334 273 SAETGLGMTELYEALRPSV 291 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l 291 (607)
||++|+|+++++++|.+.+
T Consensus 145 Sa~~g~gv~e~~~~l~~~~ 163 (164)
T d1zd9a1 145 SCKEKDNIDITLQWLIQHS 163 (164)
T ss_dssp CTTTCTTHHHHHHHHHHTC
T ss_pred eCcCCcCHHHHHHHHHHcc
Confidence 9999999999999988653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.81 E-value=4.3e-20 Score=174.08 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=102.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC---------------CceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCccccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE---------------DRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEK 389 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~---------------~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 389 (607)
++|+++|++++|||||+++|++. +........|+|.+.....+.+.++.+.++||||+.++.
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~--- 80 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV--- 80 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH---
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH---
Confidence 78999999999999999999852 011233456899999888899999999999999975541
Q ss_pred CcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcC-CcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHH
Q 007334 390 GPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEG-RGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQ 458 (607)
Q Consensus 390 ~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 458 (607)
..+.+++..||++|+|+|+.++ .+...+ +|+|+++||+|+... .+.++.+.+++...+.
T Consensus 81 -------~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~---~~~~~~i~~~i~~~l~ 150 (196)
T d1d2ea3 81 -------KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQD---SEMVELVELEIRELLT 150 (196)
T ss_dssp -------HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSC---HHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEeccccccc---HHHHHHHHHHHHHHHH
Confidence 3345677889999999999987 222334 579999999999864 2344445444444443
Q ss_pred hhCCCCCCCCEEEcccCCC
Q 007334 459 TVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 459 ~~~~~~~~~~~v~iSA~~g 477 (607)
..-.....+|++++||++|
T Consensus 151 ~~~~~~~~~pii~iSa~~g 169 (196)
T d1d2ea3 151 EFGYKGEETPIIVGSALCA 169 (196)
T ss_dssp HTTSCTTTSCEEECCHHHH
T ss_pred HhCCCcccCEEEEEEcccc
Confidence 3222334689999999988
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1e-19 Score=167.45 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=101.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||++||.+|||||||+++|++... ...+..+..+.....+..++. .+.+||++|..... .....
T Consensus 3 ~~KivvvG~~~vGKTsli~r~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~ 70 (167)
T d1c1ya_ 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT----------AMRDL 70 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST----------THHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccccceeEEeeeeEEEeccccccCccccc----------ccccc
Confidence 47999999999999999999997642 233444444444444454444 56799999965442 11235
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
+++.+|++|+|+|+++. ... ..+.|+++|+||+|+........ +.. ..+.+ ...+
T Consensus 71 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~--~~~-----~~~~~---~~~~ 140 (167)
T d1c1ya_ 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK--EQG-----QNLAR---QWCN 140 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCH--HHH-----HHHHH---HTTS
T ss_pred cccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccch--hHH-----HHHHH---HhCC
Confidence 77899999999999986 111 24689999999999976532211 100 11111 1236
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++++||++|.||+++|+.+++.+
T Consensus 141 ~~~~e~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 141 CAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcCHHHHHHHHHHHh
Confidence 7999999999999999999998754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=5.7e-20 Score=172.02 Aligned_cols=147 Identities=22% Similarity=0.196 Sum_probs=99.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++.. +.....+....+.....+...+ ..+.+|||||........ ..+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----------~~~ 71 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG----------VAF 71 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC----------CGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccc----------ccc
Confidence 699999999999999999999764 2222222222333333444444 467799999975542111 134
Q ss_pred HhhccEEEEEeccchh-------h----HH-------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCC
Q 007334 403 LMRAHVVALVLDAEEV-------R----AV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQV 464 (607)
Q Consensus 403 i~~ad~~llViD~~~~-------~----~~-------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (607)
+..||++++|+|.++. . .. ..++|+++|+||+|+.+.....+.... .....
T Consensus 72 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~-----------~~~~~ 140 (184)
T d1vg8a_ 72 YRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA-----------WCYSK 140 (184)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHH-----------HHHHT
T ss_pred ccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHH-----------HHHHh
Confidence 5679999999999875 0 00 236799999999998765332222111 11123
Q ss_pred CCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 465 TGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 465 ~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.++++++|||++|.||+++|+.+++.+.+
T Consensus 141 ~~~~~~e~Sak~~~gI~e~f~~l~~~i~~ 169 (184)
T d1vg8a_ 141 NNIPYFETSAKEAINVEQAFQTIARNALK 169 (184)
T ss_dssp TSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence 46899999999999999999998876543
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.80 E-value=7.8e-20 Score=169.29 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=108.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+++|++....... .|..............+.+|||||.. ........
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~~~~~~~------~t~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~ 75 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLGQSVTTI------PTVGFNVETVTYKNVKFNVWDVGGQD----------KIRPLWRH 75 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCCCCEEEE------EETTEEEEEEEETTEEEEEEEESCCG----------GGHHHHGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCcc------ceeeeeEEEeeccceeeEEecCCCcc----------hhhhHHHh
Confidence 468999999999999999999976643322 44445556666788999999999988 34445566
Q ss_pred HhhccCEEEEEEecCCCCCHhHH--HHHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHH--Hhc---CCCCcEE
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL--EVGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAES--LML---GFGDPIA 271 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~--~~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~--~~~---~~~~~i~ 271 (607)
++..+|++++|+|+++..+.... ++...++. ...+.|+++|+||+|+..... ..+..... ..+ ++ .+++
T Consensus 76 ~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~-~~~e 152 (173)
T d1e0sa_ 76 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNW-YVQP 152 (173)
T ss_dssp GTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCE-EEEE
T ss_pred hhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc--HHHHHHHHHHHHHHhCCC-EEEE
Confidence 88999999999999876555542 12222322 134789999999999876432 11111111 111 11 4689
Q ss_pred eecCCCCChHHHHHHhccch
Q 007334 272 ISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l 291 (607)
+||++|+|++|++++|.+.+
T Consensus 153 ~SA~tg~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 153 SCATSGDGLYEGLTWLTSNY 172 (173)
T ss_dssp CBTTTTBTHHHHHHHHHHHC
T ss_pred eeCCCCcCHHHHHHHHHHhc
Confidence 99999999999999997643
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=1.6e-19 Score=166.61 Aligned_cols=158 Identities=17% Similarity=0.217 Sum_probs=114.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|++||.+|||||||++++++.++. ..... +...+.....+...+ ..+.+|||+|... +...+.
T Consensus 4 iKi~vvG~~~vGKTsLi~~~~~~~f~--~~~~~-t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~----------~~~~~~ 70 (170)
T d1ek0a_ 4 IKLVLLGEAAVGKSSIVLRFVSNDFA--ENKEP-TIGAAFLTQRVTINEHTVKFEIWDTAGQER----------FASLAP 70 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--TTCCC-CSSEEEEEEEEEETTEEEEEEEEEECCSGG----------GGGGHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC--ccccc-cccceeeccccccccccccccccccCCchh----------HHHHHH
Confidence 47999999999999999999987652 22221 123333334444444 5799999999983 223345
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH-HH-HHHHhhCCCCcEEEEecCCCcccC---CcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE-VG-KWLRKHAPQIKPIVAMNKCESLHN---GTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~-~~-~~l~~~~~~~p~ilV~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.++..+|++++|+|.+++.+..... +. .+........|+++|+||+|+... +.+..++....+...++ +++++|
T Consensus 71 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~-~~~e~S 149 (170)
T d1ek0a_ 71 MYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGL-LFFETS 149 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEEECC
T ss_pred HHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCC-EEEEec
Confidence 6789999999999999877666532 22 222323557899999999998754 33445556666677777 889999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|.|++++|+.|.+.++
T Consensus 150 ak~g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 150 AKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TTTCTTHHHHHHHHHTTSC
T ss_pred CCCCcCHHHHHHHHHHHhc
Confidence 9999999999999987653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.80 E-value=3.5e-20 Score=173.10 Aligned_cols=153 Identities=20% Similarity=0.153 Sum_probs=106.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||+++|.+........ |...........+..+.+|||||... +......
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~------t~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~ 80 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIGEVVTTKP------TIGFNVETLSYKNLKLNVWDLGGQTS----------IRPYWRC 80 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEEEECS------STTCCEEEEEETTEEEEEEEEC--------------CCTTGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcccc------ccceEEEEEeeCCEEEEEEecccccc----------cchhHHh
Confidence 5789999999999999999999876644432 22233445566889999999999983 2233445
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHH-----hcCCCCc
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESL-----MLGFGDP 269 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~-----~~~~~~~ 269 (607)
++..+|++++|+|+++..+..+ ...|+... ..+.|+++|+||+|+..... ..+...... ..++ ++
T Consensus 81 ~~~~~~~ii~v~d~~d~~s~~~--~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~-~~ 155 (182)
T d1moza_ 81 YYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGALS--ASEVSKELNLVELKDRSW-SI 155 (182)
T ss_dssp TTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HHHHHHHTTTTTCCSSCE-EE
T ss_pred hhccceeEEEEeeecccccchh--HHHHHHHHHHhhccCCcceEEEEEeeccccccC--HHHHHHHHHHHHHhhCCC-EE
Confidence 6789999999999999877765 22333321 34689999999999875422 122221111 1111 46
Q ss_pred EEeecCCCCChHHHHHHhccchHH
Q 007334 270 IAISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 270 i~iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
++|||++|+|+++++++|.+.+.+
T Consensus 156 ~e~SA~~g~gv~e~~~~l~~~i~~ 179 (182)
T d1moza_ 156 VASSAIKGEGITEGLDWLIDVIKE 179 (182)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999887754
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=5.3e-20 Score=171.05 Aligned_cols=168 Identities=26% Similarity=0.368 Sum_probs=118.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
...|+|+|+||||||||+|+|++.+.+.++..++ +++.............+..+|++|....... ............
T Consensus 5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (179)
T d1egaa1 5 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ--TTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR-AINRLMNKAASS 81 (179)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSS--CCSSCEEEEEEETTEEEEEESSSSCCHHHHH-HHHHHHTCCTTS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCceeeccCCC--ceEEEEEeeeecCCceeEeecCCCceecchh-hhhhhhhhcccc
Confidence 3579999999999999999999998888877665 7777777777778888999999998732110 010011111111
Q ss_pred HhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
....+|+++++.|.+.. ......+...+.+. ..|.++|+||+|..................++..+++++||++|.|
T Consensus 82 ~~~~~~~~l~~~d~~~~-~~~~~~~~~~l~~~--~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g 158 (179)
T d1egaa1 82 SIGDVELVIFVVEGTRW-TPDDEMVLNKLREG--KAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN 158 (179)
T ss_dssp CCCCEEEEEEEEETTCC-CHHHHHHHHHHHSS--SSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred chhhcceeEEEEecCcc-chhHHHHHHHhhhc--cCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence 23467788888887753 34444555566554 6789999999998875432223333344456666889999999999
Q ss_pred hHHHHHHhccchHH
Q 007334 280 MTELYEALRPSVED 293 (607)
Q Consensus 280 i~eL~~~i~~~l~~ 293 (607)
+++|++.|.+.+++
T Consensus 159 i~~L~~~i~~~lpe 172 (179)
T d1egaa1 159 VDTIAAIVRKHLPE 172 (179)
T ss_dssp HHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999987754
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.8e-19 Score=166.98 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=108.7
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGM 196 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~ 196 (607)
.+.+|++||.+|||||||+|++++.++... ... ++............+ ..+.+|||+|.. +....
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~--~~~-t~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~ 71 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQ--LFH-TIGVEFLNKDLEVDGHFVTMQIWDTAGQE----------RFRSL 71 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-------CCSEEEEEEEEEETTEEEEEEEEECCCCG----------GGHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCc--ccc-ceeeeeeeeeeeecCceeeEeeecccCcc----------eehhh
Confidence 357899999999999999999998764221 111 122222333333344 567899999987 33345
Q ss_pred HHHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcE
Q 007334 197 TANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPI 270 (607)
Q Consensus 197 ~~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i 270 (607)
...++..+|++++++|.+++.+..... +.+.+.+. ..+.|+++|+||+|+.+ +....++....+...+.-+++
T Consensus 72 ~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~ 150 (174)
T d1wmsa_ 72 RTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYF 150 (174)
T ss_dssp HGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEE
T ss_pred hhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEE
Confidence 556788999999999999766555421 22222221 23689999999999865 344455555555555533789
Q ss_pred EeecCCCCChHHHHHHhccch
Q 007334 271 AISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 271 ~iSA~~g~gi~eL~~~i~~~l 291 (607)
++||++|.||+++|+.|++.+
T Consensus 151 e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 151 ETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHH
Confidence 999999999999999887654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.80 E-value=9.9e-20 Score=176.31 Aligned_cols=159 Identities=17% Similarity=0.252 Sum_probs=101.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEE------------------EEEcCeEEEEEecCCCccccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVH------------------FEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~------------------~~~~~~~~~liDTpG~~~~~~ 387 (607)
.|+|+|++|+|||||+|+|++..... ....++|.+..... +.+++.++.++||||+.++..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~ 85 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSAVAS-REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT 85 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHSC-C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred EEEEEeCCCccHHHHHHHHHhhcchh-eecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence 49999999999999999999763322 22223333221111 123566899999999876621
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchH-------------
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSA------------- 444 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~------------- 444 (607)
.. ..++..||++|+|+|+.++ .....++|+|+|+||||+........
T Consensus 86 ~~----------~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~ 155 (227)
T d1g7sa4 86 LR----------KRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI 155 (227)
T ss_dssp SB----------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred cc----------hhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHhhhcchH
Confidence 11 1345679999999999886 34457899999999999986432110
Q ss_pred -HHHHHHHhcHH---HHHhh----------CCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 445 -LYKRVKEAVPQ---EIQTV----------IPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 445 -~~~~~~~~~~~---~~~~~----------~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
....+...+.. .+... -.+...++++++||++|.|+++|++.+....+++.
T Consensus 156 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~ 220 (227)
T d1g7sa4 156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 00011111111 11110 01123468999999999999999999888766543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=5.1e-20 Score=172.34 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=107.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+++|+++|++|||||||+++|++.++... ..+....+..............+.+|||+|..... .....
T Consensus 2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~ 70 (184)
T d1vg8a_ 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ----------SLGVA 70 (184)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSS-CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS----------CSCCG
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCC-cCCccceeeeeeeeeeCCceEEEEeeecCCccccc----------ccccc
Confidence 36899999999999999999998764211 11211133333333333344678999999987332 22234
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
++..+|++++|+|.++..+.... .+...+... ..+.|+++|+||+|+.... ...+.....+.....-+++++|
T Consensus 71 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~e~S 149 (184)
T d1vg8a_ 71 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKRAQAWCYSKNNIPYFETS 149 (184)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHHHHHHHHHTTSCCEEECB
T ss_pred cccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccc-hhHHHHHHHHHHhcCCeEEEEc
Confidence 57889999999999875554442 222222221 2357999999999987643 3333333333333333789999
Q ss_pred cCCCCChHHHHHHhccchHHH
Q 007334 274 AETGLGMTELYEALRPSVEDY 294 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~~~ 294 (607)
|++|.|++++++.|.+.+.++
T Consensus 150 ak~~~gI~e~f~~l~~~i~~~ 170 (184)
T d1vg8a_ 150 AKEAINVEQAFQTIARNALKQ 170 (184)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999988765443
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=3.1e-19 Score=163.97 Aligned_cols=146 Identities=19% Similarity=0.246 Sum_probs=102.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++.. ......++++.+.....+.+++. .+.+|||||...... + ...+
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~------~----~~~~ 71 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT------I----TTAY 71 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC------C----CHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHH------H----HHHH
Confidence 699999999999999999999753 44444566666666666777765 455899999654421 1 1256
Q ss_pred HhhccEEEEEeccchhh--------------HHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 403 LMRAHVVALVLDAEEVR--------------AVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 403 i~~ad~~llViD~~~~~--------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
++.+|++++|+|.++.. ......|+++++||.|+.......+....+. . ..+++
T Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~----~--------~~~~~ 139 (166)
T d1g16a_ 72 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA----K--------ELGIP 139 (166)
T ss_dssp HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHH----H--------HHTCC
T ss_pred HhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHH----H--------hcCCe
Confidence 78999999999999871 1124678999999999876544333222211 1 12679
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
++++||++|.||+++|+.+++.+.+
T Consensus 140 ~~~~Sa~~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 140 FIESSAKNDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999887643
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1e-19 Score=170.17 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=111.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+|||.+|||||||+|+|++..+. ..... +..+.....+..+ ...+.+||++|+.. +.....
T Consensus 6 iKivviG~~~vGKTsli~~~~~~~f~--~~~~~--ti~~~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~~ 71 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIP--TVFDNYSANVMVDGKPVNLGLWDTAGQED----------YDRLRP 71 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC--SSCCC--CSCCEEEEEEEETTEEEEEEEECCCCSGG----------GTTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--ccccc--ceeeceeeeeeccCcceEEEeeccccccc----------chhhhh
Confidence 48999999999999999999987642 22222 3334433333333 35688999999983 333344
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCCc------------CcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNGT------------GSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~~------------~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|+++..+.+... +...++....+.|+++|+||+|+...+. ....+....+...
T Consensus 72 ~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 151 (183)
T d1mh1a_ 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (183)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHc
Confidence 5688999999999999877766532 4455555566889999999999865421 1222333444555
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccch
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+.-.++++||++|.||+++|+.|.+.+
T Consensus 152 ~~~~~~E~SAk~~~~V~e~F~~l~~~i 178 (183)
T d1mh1a_ 152 GAVKYLECSALTQRGLKTVFDEAIRAV 178 (183)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCcCHHHHHHHHHHHH
Confidence 544779999999999999999887654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=3.1e-20 Score=172.18 Aligned_cols=148 Identities=22% Similarity=0.258 Sum_probs=92.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC---eEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG---RTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
+||+++|.+|||||||+++|++.. +.....+..+...........+ ..+.+|||||..+.. .....
T Consensus 3 ~Ki~~vG~~~vGKSsLi~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~ 71 (175)
T d1ky3a_ 3 LKVIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ----------SLGVA 71 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------C
T ss_pred EEEEEECCCCcCHHHHHHHHHcCC-CCCccCcccccceeeeeeeecCcccccceeeccCCchhhh----------hHHHH
Confidence 799999999999999999999764 2222222222222222332222 367899999964432 11224
Q ss_pred HHhhccEEEEEeccchh-----------hHH-------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~-------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
+++.+|++++|+|+++. ... ..++|+++|+||+|+.+....... +.. .++.+.
T Consensus 72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~-~~~-----~~~~~~--- 142 (175)
T d1ky3a_ 72 FYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSE-KSA-----QELAKS--- 142 (175)
T ss_dssp CSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCH-HHH-----HHHHHH---
T ss_pred HhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhH-HHH-----HHHHHH---
Confidence 56789999999999875 011 136899999999999754221100 000 112222
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
....++++|||++|.||+++|+.|++.+-
T Consensus 143 ~~~~~~~e~SA~~g~gv~e~f~~l~~~~l 171 (175)
T d1ky3a_ 143 LGDIPLFLTSAKNAINVDTAFEEIARSAL 171 (175)
T ss_dssp TTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 23478999999999999999999987654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=8.4e-20 Score=167.83 Aligned_cols=159 Identities=17% Similarity=0.208 Sum_probs=112.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMT 197 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~ 197 (607)
+.+|+++|.+|||||||+++|++.+... ...+. ++.+.....+...+ ..+.+|||||++... ..+
T Consensus 2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~-~~~~t--~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~----------~~~ 68 (166)
T d1g16a_ 2 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITT--IGIDFKIKTVDINGKKVKLQIWDTAGQERFR----------TIT 68 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC----------CCEEEEEEESSSCEEEEEEECCTTGGGTS----------CCC
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCC-ccCCc--cceeEEEEEEEECCEEEEEEEEECCCchhhH----------HHH
Confidence 4689999999999999999999876421 11232 45555555555555 467789999987332 233
Q ss_pred HHHhhccCEEEEEEecCCCCCHhHHH-HHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecC
Q 007334 198 ANVLAKTQFAIFMIDVRSGLHPLDLE-VGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAE 275 (607)
Q Consensus 198 ~~~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~ 275 (607)
..+++.+|++++|+|.+++.+..... +...... .....|++++.||.|+.... ...++....+...+. +++++||+
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (166)
T d1g16a_ 69 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGI-PFIESSAK 146 (166)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred HHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhh-hhHHHHHHHHHhcCC-eEEEECCC
Confidence 45789999999999999876665533 2222322 24567889999999987643 334444555566676 88999999
Q ss_pred CCCChHHHHHHhccchHH
Q 007334 276 TGLGMTELYEALRPSVED 293 (607)
Q Consensus 276 ~g~gi~eL~~~i~~~l~~ 293 (607)
+|+|++++|+.|.+.+.+
T Consensus 147 ~~~~v~e~f~~l~~~i~~ 164 (166)
T d1g16a_ 147 NDDNVNEIFFTLAKLIQE 164 (166)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999877654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=9.1e-20 Score=168.45 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=98.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC--eEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG--RTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+||+++|.+|||||||+++|++.. +.....|++..+.....+..++ ..+.+|||||....... ...+
T Consensus 4 ~Ki~vvG~~~vGKTsli~~~~~~~-f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~----------~~~~ 72 (170)
T d1i2ma_ 4 FKLVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL----------RDGY 72 (170)
T ss_dssp EEEEEEECTTSSHHHHHHTTC------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSC----------GGGG
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCcccccceecccccccccccccccccccccccccccccee----------cchh
Confidence 699999999999999999999653 2222233333444444444554 47789999996544211 1245
Q ss_pred HhhccEEEEEeccchh-------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 403 LMRAHVVALVLDAEEV-------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 403 i~~ad~~llViD~~~~-------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
++.+|++++|+|+++. .....+.|+++|+||+|+.......+. . .++...++++
T Consensus 73 ~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~---------~----~~~~~~~~~~ 139 (170)
T d1i2ma_ 73 YIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS---------I----VFHRKKNLQY 139 (170)
T ss_dssp TTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTS---------H----HHHSSCSSEE
T ss_pred cccccchhhccccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHH---------H----HHHHHcCCEE
Confidence 6789999999999886 122458999999999999765432111 0 1122347899
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
+++||++|.||+++|+.|.+.+
T Consensus 140 ~e~Sak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 140 YDISAKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp EEEBTTTTBTTTHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999988754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=3.7e-19 Score=163.15 Aligned_cols=158 Identities=19% Similarity=0.152 Sum_probs=111.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
+.+|++||.+|||||||++++++.++........ ..+..............+.+||++|.... ....+..
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 71 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI-GVDFRERAVDIDGERIKIQLWDTAGQERF---------RKSMVQH 71 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCC-SCCEEEEEEEETTEEEEEEEEECCCSHHH---------HTTTHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccc-ccccceeeeeeeccceEEEEEeccCchhh---------cccccee
Confidence 3689999999999999999999876432221111 12222222223334567999999998721 1123456
Q ss_pred HhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAET 276 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~ 276 (607)
++..+|++++|+|++++.+.+.. .+...+.+. ..+.|+++|+||+|+.....+..++....+..+++ +++++||++
T Consensus 72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~SAkt 150 (165)
T d1z06a1 72 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFETSAKN 150 (165)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEECCSSS
T ss_pred eecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCC-EEEEEeccc
Confidence 78999999999999988776653 233333332 34789999999999988766666766677777887 789999987
Q ss_pred ---CCChHHHHHHhc
Q 007334 277 ---GLGMTELYEALR 288 (607)
Q Consensus 277 ---g~gi~eL~~~i~ 288 (607)
|.||+++|+.|.
T Consensus 151 ~~~~~~V~e~F~~lA 165 (165)
T d1z06a1 151 PNDNDHVEAIFMTLA 165 (165)
T ss_dssp GGGGSCHHHHHHHHC
T ss_pred CCcCcCHHHHHHHhC
Confidence 559999998763
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=1.8e-19 Score=171.26 Aligned_cols=141 Identities=23% Similarity=0.250 Sum_probs=102.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCC-----------ceeecCC-----CCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQED-----------RVLVGPE-----AGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~-----------~~~~~~~-----~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
.++|+++|++++|||||+++|++.. ....... .|+|.+.....+.+++.++.|+||||+.++.
T Consensus 3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~- 81 (204)
T d2c78a3 3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI- 81 (204)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH-
T ss_pred CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH-
Confidence 3789999999999999999997421 0111112 2899999999999999999999999987662
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCcCchHHHHHHHHhcHHH
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGRQNSALYKRVKEAVPQE 456 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 456 (607)
..+.+++..||++|+|+|+.++ .+...++| +|+++||||+.+. .+.++.+.+.+...
T Consensus 82 ---------~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~---~~~~~~~~~~i~~~ 149 (204)
T d2c78a3 82 ---------KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD---PELLDLVEMEVRDL 149 (204)
T ss_dssp ---------HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC---HHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCC---HHHHHHHHHHHHHH
Confidence 3456788899999999999987 23456776 7788999999764 23455555444444
Q ss_pred HHhhCCCCCCCCEEEcccCCC
Q 007334 457 IQTVIPQVTGIPVVFTSALEG 477 (607)
Q Consensus 457 ~~~~~~~~~~~~~v~iSA~~g 477 (607)
+...-.....++++++||..|
T Consensus 150 l~~~~~~~~~i~~i~~sa~~~ 170 (204)
T d2c78a3 150 LNQYEFPGDEVPVIRGSALLA 170 (204)
T ss_dssp HHHTTSCTTTSCEEECCHHHH
T ss_pred HHhcCCCcccceeeeeechhh
Confidence 433222234578999998755
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=3.2e-20 Score=171.96 Aligned_cols=148 Identities=20% Similarity=0.157 Sum_probs=83.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
-+||+++|.+|||||||+++|++.. ......++++.+.....+..++. .+.+|||||...+... ...
T Consensus 6 ~~Ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~----------~~~ 74 (173)
T d2fu5c1 6 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI----------TTA 74 (173)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCT
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCC-CCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHH----------HHH
Confidence 3799999999999999999999753 33444455566666667777775 4567999996544211 123
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
+++.+|++|+|+|++++ .....+.|+++|+||+|+......... ... .. . ...++
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~--~~~-~~----~----~~~~~ 143 (173)
T d2fu5c1 75 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKE--RGE-KL----A----LDYGI 143 (173)
T ss_dssp TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHH--HHH-HH----H----HHHTC
T ss_pred hccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHH--HHH-HH----H----HhcCC
Confidence 46789999999999876 111346899999999998865432211 110 01 1 11267
Q ss_pred CEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
+++++||++|.||+++|++|++.+..
T Consensus 144 ~~~e~Sa~~g~gv~e~f~~l~~~i~~ 169 (173)
T d2fu5c1 144 KFMETSAKANINVENAFFTLARDIKA 169 (173)
T ss_dssp EEEECCC---CCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999887653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.79 E-value=1.9e-19 Score=169.64 Aligned_cols=158 Identities=16% Similarity=0.116 Sum_probs=120.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccc---------------eeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccC
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRR---------------EALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEAT 185 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~---------------~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~ 185 (607)
.+|+++|+.++|||||+++|++.- ........| .|.+.....+.+.++.+.++||||+.
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rg--iTi~~~~~~~~~~~~~~~~iDtPGh~---- 77 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARG--ITINAAHVEYSTAARHYAHTDCPGHA---- 77 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETT--EEEECEEEEEECSSCEEEEEECSSHH----
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCC--ccCCcceEEEEeceeeEEeecCcchH----
Confidence 379999999999999999998520 001122234 78888888888899999999999998
Q ss_pred chhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHH----HHHHHH
Q 007334 186 SGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLA----GAAAES 261 (607)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~----~~~~~~ 261 (607)
+|...+...+..+|++++|+|+.+|+.+++.+.+..+.... ..|+|+++||+|+..... ..+ +....+
T Consensus 78 ------~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~-~~~iIv~iNK~D~~~~~~-~~~~i~~~i~~~l 149 (196)
T d1d2ea3 78 ------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG-VEHVVVYVNKADAVQDSE-MVELVELEIRELL 149 (196)
T ss_dssp ------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTT-CCCEEEEEECGGGCSCHH-HHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhc-CCcEEEEEecccccccHH-HHHHHHHHHHHHH
Confidence 67777888899999999999999999999988888877762 357889999999875321 111 122223
Q ss_pred HhcCC----CCcEEeecCCC----------CChHHHHHHhccchH
Q 007334 262 LMLGF----GDPIAISAETG----------LGMTELYEALRPSVE 292 (607)
Q Consensus 262 ~~~~~----~~~i~iSA~~g----------~gi~eL~~~i~~~l~ 292 (607)
...++ .+++++||++| .|+.+|++.|.+.++
T Consensus 150 ~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 150 TEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp HHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 33454 25799999998 588899988876654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=5.2e-19 Score=164.06 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=101.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||++++++... .+...++.+.....+..+|. .+.||||+|.... .
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~~f---~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~---------------~ 66 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTGSY---QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA---------------K 66 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHSCC---CCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH---------------H
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC---CCcCCccceeEEEEeecCceEEEEEEeeccccccc---------------c
Confidence 38999999999999999999998753 23344555555666777776 4668999995422 3
Q ss_pred HHhhccEEEEEeccchhh-----------H------HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHH-HHHhhCCC
Q 007334 402 NLMRAHVVALVLDAEEVR-----------A------VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQ-EIQTVIPQ 463 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~~-----------~------~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 463 (607)
+++.||++|+|||+++.. . .....|+++|+||.|+....... +.. +.......
T Consensus 67 ~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~---------v~~~~~~~~~~~ 137 (175)
T d2bmja1 67 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV---------VGDARARALCAD 137 (175)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCC---------SCHHHHHHHHHT
T ss_pred cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcc---------hhHHHHHHHHHH
Confidence 567899999999999761 0 12356899999999986543211 111 11122223
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
..++++++|||++|.|++++|..+++.+..
T Consensus 138 ~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 167 (175)
T d2bmja1 138 MKRCSYYETCATYGLNVDRVFQEVAQKVVT 167 (175)
T ss_dssp STTEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred hCCCeEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 456789999999999999999998876543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=7.4e-19 Score=163.29 Aligned_cols=146 Identities=18% Similarity=0.170 Sum_probs=102.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. +.....+.++.+.....+.+++. .+.||||||..+... ....
T Consensus 7 ~iKi~vvG~~~vGKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~~ 75 (177)
T d1x3sa1 7 TLKILIIGESGVGKSSLLLRFTDDT-FDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT----------LTPS 75 (177)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC----------SHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHhCC-CCCccccceeecceeEEEEEeccccEEEEEECCCchhhHH----------HHHH
Confidence 4899999999999999999999764 33344444555555555666655 577999999754421 1234
Q ss_pred HHhhccEEEEEeccchh-----------hH----HhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RA----VEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++++|+|+++. .. .....|+++++||.|.....-....... +. ...+
T Consensus 76 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~--------~~----~~~~ 143 (177)
T d1x3sa1 76 YYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK--------FA----RKHS 143 (177)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH--------HH----HHTT
T ss_pred HHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHH--------HH----HHCC
Confidence 67789999999999876 11 1235789999999998654322111111 11 1235
Q ss_pred CCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 467 ~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
++++++||++|.|++++|+.+++.+.
T Consensus 144 ~~~~e~Sa~tg~gv~e~f~~l~~~l~ 169 (177)
T d1x3sa1 144 MLFIEASAKTCDGVQCAFEELVEKII 169 (177)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence 78999999999999999999887654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.8e-19 Score=169.67 Aligned_cols=157 Identities=14% Similarity=0.104 Sum_probs=111.3
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++++..+ ..+... +..+.........+ ..+.+|||+|.+ ++.....
T Consensus 4 iKvvllG~~~vGKTSli~r~~~~~f--~~~~~~--t~~~~~~~~~~~~~~~~~l~i~D~~g~~----------~~~~~~~ 69 (191)
T d2ngra_ 4 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVP--TVFDNYAVTVMIGGEPYTLGLFDTAGQE----------DYDRLRP 69 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC--CSSCCC--CSEEEEEEEEEETTEEEEEEEEEECCSG----------GGTTTGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC--CCCcCC--ceeeecceeEeeCCceeeeeccccccch----------hhhhhhh
Confidence 4799999999999999999998764 222222 33333333333443 478999999998 3334455
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccCC------------cCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHNG------------TGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~~------------~~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|++++.+.+... +...+.....+.|+++|+||+|+.... .+..++....+...
T Consensus 70 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (191)
T d2ngra_ 70 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149 (191)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred hcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHc
Confidence 6788999999999999987766532 344455556689999999999987432 23334444445554
Q ss_pred CCCCcEEeecCCCCChHHHHHHhccch
Q 007334 265 GFGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 265 ~~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+.-.++++||++|.||+++|+.+...+
T Consensus 150 ~~~~~~e~SAk~~~~V~e~f~~l~~~~ 176 (191)
T d2ngra_ 150 KAVKYVECSALTQKGLKNVFDEAILAA 176 (191)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 433679999999999999999877544
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.9e-19 Score=166.07 Aligned_cols=147 Identities=18% Similarity=0.213 Sum_probs=99.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++... .....+..+.+.....+..++. .+.+|||+|..+.. . ....
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~---------~-~~~~ 71 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDF-AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA---------S-LAPM 71 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---------G-GHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCC-CccccccccceeeccccccccccccccccccCCchhHH---------H-HHHH
Confidence 47999999999999999999997642 2222233334444455666665 67799999964431 1 1235
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGI 467 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (607)
++..+|++++|+|.++. .......|+++++||+|+.+...... +..+..+.++...++
T Consensus 72 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~--------v~~~~~~~~~~~~~~ 143 (170)
T d1ek0a_ 72 YYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERK--------VAREEGEKLAEEKGL 143 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCC--------SCHHHHHHHHHHHTC
T ss_pred HHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhh--------hhHHHHHHHHHHcCC
Confidence 78899999999999886 11134689999999999865422110 001111111112367
Q ss_pred CEEEcccCCCCCHHHHHHHHHH
Q 007334 468 PVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 468 ~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+++++||++|.||+++|..|.+
T Consensus 144 ~~~e~Sak~g~gV~e~F~~i~~ 165 (170)
T d1ek0a_ 144 LFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHT
T ss_pred EEEEecCCCCcCHHHHHHHHHH
Confidence 9999999999999999998865
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.7e-19 Score=166.30 Aligned_cols=155 Identities=20% Similarity=0.211 Sum_probs=110.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+|+|++.++. ...+. ..+.+.....+..+ ...+.+|||||++... ....
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 74 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFD--PELAA-TIGVDFKVKTISVDGNKAKLAIWDTAGQERFR----------TLTP 74 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--TTCCC-CCSEEEEEEEEEETTEEEEEEEEEECSSGGGC----------CSHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC--Ccccc-ceeecceeEEEEEeccccEEEEEECCCchhhH----------HHHH
Confidence 47999999999999999999987642 22221 13333333344444 3579999999987332 2334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHHHHHHHhh-----CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-----APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
.++..+|++++|+|++++.+... +..|+.+. ....|+++++||.|.... .+...+........++ .++++|
T Consensus 75 ~~~~~~~~ii~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~-~v~~~~~~~~~~~~~~-~~~e~S 150 (177)
T d1x3sa1 75 SYYRGAQGVILVYDVTRRDTFVK--LDNWLNELETYCTRNDIVNMLVGNKIDKENR-EVDRNEGLKFARKHSM-LFIEAS 150 (177)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHT--HHHHHHHHTTCCSCSCCEEEEEEECTTSSSC-CSCHHHHHHHHHHTTC-EEEECC
T ss_pred HHHhcCCEEEEEEECCCcccccc--chhhhhhhcccccccceeeEEEeeccccccc-cccHHHHHHHHHHCCC-EEEEEe
Confidence 56789999999999987655444 33344332 335788999999997654 3445555666777777 789999
Q ss_pred cCCCCChHHHHHHhccchH
Q 007334 274 AETGLGMTELYEALRPSVE 292 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~l~ 292 (607)
|++|+|++++++.|.+.+.
T Consensus 151 a~tg~gv~e~f~~l~~~l~ 169 (177)
T d1x3sa1 151 AKTCDGVQCAFEELVEKII 169 (177)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHc
Confidence 9999999999999887654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.78 E-value=5.9e-19 Score=160.18 Aligned_cols=144 Identities=18% Similarity=0.189 Sum_probs=102.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
+||+++|+||||||||+|+|++.+....... +. ............+.+||+||..... .....++.
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~d~~g~~~~~----------~~~~~~~~ 66 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPT--IG--FNVETVEYKNISFTVWDVGGQDKIR----------PLWRHYFQ 66 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCC--SS--CCEEEEECSSCEEEEEECCCCGGGH----------HHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccc--ee--eEEEEEeeeeEEEEEecCCCcccch----------hhhhhhhc
Confidence 5899999999999999999998753322211 11 2223445677889999999964331 23456778
Q ss_pred hccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCE
Q 007334 405 RAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPV 469 (607)
Q Consensus 405 ~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (607)
.++++++++|.++. .......|+++++||+|+.+.....+ +.......+....+.++
T Consensus 67 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~--------i~~~~~~~~~~~~~~~~ 138 (160)
T d1r8sa_ 67 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE--------ITDKLGLHSLRHRNWYI 138 (160)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH--------HHHHTTGGGCSSCCEEE
T ss_pred cceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHH--------HHHHHHHHHHhhCCCEE
Confidence 89999999999875 11234689999999999886543221 12222333344456789
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 007334 470 VFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 470 v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+++||++|+|++++|++|.+.
T Consensus 139 ~~~SAktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 139 QATCATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp EECBTTTTBTHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHhc
Confidence 999999999999999998763
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.4e-19 Score=167.74 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=103.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.. + ...+.+|..+........++. .+.||||+|..++... ...
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~----------~~~ 70 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNK-F-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL----------RPL 70 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-C-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT----------GGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCC-C-CCCcCCceeeecceeEeeCCceeeeeccccccchhhhhh----------hhh
Confidence 4799999999999999999999763 3 334444444555555666665 5679999997554211 124
Q ss_pred HHhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCC-CCC
Q 007334 402 NLMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIP-QVT 465 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 465 (607)
+++.+|++++|+|+++. .....+.|+++|+||+|+.+.....+..... ...+..+..+.++ ...
T Consensus 71 ~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (191)
T d2ngra_ 71 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150 (191)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred cccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcC
Confidence 56789999999999976 1122578999999999997542111100000 0012222222222 234
Q ss_pred CCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 466 GIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 466 ~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
+.+++++||++|.||+++|+.++..
T Consensus 151 ~~~~~e~SAk~~~~V~e~f~~l~~~ 175 (191)
T d2ngra_ 151 AVKYVECSALTQKGLKNVFDEAILA 175 (191)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcCHHHHHHHHHHH
Confidence 6789999999999999999987764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.78 E-value=4.8e-19 Score=167.31 Aligned_cols=159 Identities=19% Similarity=0.074 Sum_probs=105.9
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeecc--CCCCceeeeeEEEEe-----------------------eeCCeeEEEe
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYN--TPDDHVTRDIREGLA-----------------------KLGDLRFKVL 175 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~--~~~~~~T~~~~~~~~-----------------------~~~~~~~~li 175 (607)
.+|+++|+.|+|||||+|+|++........ ..+ .|.+..+... ...+..+.++
T Consensus 6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 83 (195)
T d1kk1a3 6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRG--ITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 83 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSC--SSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcC--cccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence 378999999999999999999753222211 122 3333222111 1123458999
Q ss_pred cCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCC-HhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCc-
Q 007334 176 DSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLH-PLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGS- 253 (607)
Q Consensus 176 DTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~-~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~- 253 (607)
||||+. ++...+...+..+|++++|+|+.++.. ....+....++... ..++|+++||+|+.+.....
T Consensus 84 DtPGh~----------~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~-~~~iiv~inK~D~~d~~~~~~ 152 (195)
T d1kk1a3 84 DAPGHE----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-QKNIIIAQNKIELVDKEKALE 152 (195)
T ss_dssp ECSSHH----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHH
T ss_pred ccchhh----------hhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc-CccceeeeecccchhhHHHHH
Confidence 999987 677777888899999999999999864 44455566666652 23578889999988642110
Q ss_pred -HHHHHHHHHhcCC--CCcEEeecCCCCChHHHHHHhccchH
Q 007334 254 -LAGAAAESLMLGF--GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 254 -~~~~~~~~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
.......+...+. .+++++||++|+|+++|++.|.+.+|
T Consensus 153 ~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 153 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 1111122222222 25699999999999999999987654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.3e-19 Score=163.23 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=97.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
-+||+++|.+|||||||+|+|++.. ......+.+........+..++. .+.+|||+|..+.. .....
T Consensus 6 ~~KI~vvG~~~vGKSSli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~~~~ 74 (174)
T d1wmsa_ 6 LFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR----------SLRTP 74 (174)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH----------HHHGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeeeeeeeeeeecCceeeEeeecccCcceeh----------hhhhh
Confidence 3699999999999999999999753 22222222333333445555665 45699999954331 12234
Q ss_pred HHhhccEEEEEeccchh-------h----HH-------hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCC
Q 007334 402 NLMRAHVVALVLDAEEV-------R----AV-------EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQ 463 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-------~----~~-------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (607)
++..+|++++|+|.++. . .. ..+.|+++|+||+|+.+..-..+.... +.+ .
T Consensus 75 ~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~--------~~~---~ 143 (174)
T d1wmsa_ 75 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA--------WCR---D 143 (174)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHH--------HHH---H
T ss_pred hhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHH--------HHH---H
Confidence 56789999999999865 0 00 136899999999998653222211111 111 1
Q ss_pred CCCCCEEEcccCCCCCHHHHHHHHHHHH
Q 007334 464 VTGIPVVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 464 ~~~~~~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
...+++++|||++|.||+++|+.+++.+
T Consensus 144 ~~~~~~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 144 NGDYPYFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 2357899999999999999999988754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=4.5e-19 Score=167.39 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=99.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccC-cc--hhHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKG-PA--SLSVMQSR 400 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~--~~~~~~~~ 400 (607)
.+|+|+|+||||||||+|+|+|.+. +.++..+++|.+...... ...+.++|++|......... .+ ........
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccc---cccceEEEEEeeccccccccccchhhhHHhhhh
Confidence 4899999999999999999998653 467788888877654432 34566788888644321111 11 11123344
Q ss_pred HHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 401 KNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
.+...+|++++|+|++.+ .....++|+++|+||+|+.......+..+. +.+.+....+.+++
T Consensus 101 ~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~--------~~~~l~~~~~~~~~ 172 (195)
T d1svia_ 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKV--------VRQTLNIDPEDELI 172 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHH--------HHHHHTCCTTSEEE
T ss_pred ccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHH--------HHHHhcccCCCCEE
Confidence 555678999999999764 233468999999999999765433222222 22333344567899
Q ss_pred EcccCCCCCHHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++||++|.|++++++.|.+.+
T Consensus 173 ~~SA~~~~gi~el~~~i~~~l 193 (195)
T d1svia_ 173 LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999987764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.77 E-value=1.4e-18 Score=160.79 Aligned_cols=146 Identities=18% Similarity=0.216 Sum_probs=105.9
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.||||||||+|+|.+.......+..+++.. .+...+..+.++|++|...... .....+
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~ 80 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESLRS----------SWNTYY 80 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE----EEEETTEEEEEEECCC----CG----------GGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEE----EEeecceEEEEecccccccccc----------chhhhh
Confidence 48999999999999999999999877766666665443 3456788999999999644321 123456
Q ss_pred hhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..++++++|+|.++. .....+.|+++|+||+|+.......+ +...+........+++
T Consensus 81 ~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--------i~~~~~~~~~~~~~~~ 152 (177)
T d1zj6a1 81 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE--------ISQFLKLTSIKDHQWH 152 (177)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHH--------HHHHHTGGGCCSSCEE
T ss_pred ccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHH--------HHHHHHHHhhHhcCCE
Confidence 789999999999865 12235789999999999976543221 1122222333445678
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTY 491 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~ 491 (607)
++++||++|+|+++++++|.+.+
T Consensus 153 ~~~~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 153 IQACCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=1.5e-19 Score=165.81 Aligned_cols=143 Identities=20% Similarity=0.210 Sum_probs=93.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEc--CeEEEEEecCCCcccccccCcchhHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQ--GRTVYLVDTAGWLQREKEKGPASLSVMQSRK 401 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 401 (607)
.+||+++|.+|||||||+++|++.... ....+.++........... ...+.+||++|..... ......
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 71 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-DRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR---------KSMVQH 71 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC-SSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH---------TTTHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCC-CccCcccccccceeeeeeeccceEEEEEeccCchhhc---------ccccee
Confidence 379999999999999999999976422 2222222222223334443 3467799999953321 112235
Q ss_pred HHhhccEEEEEeccchh-----------hHH----hcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCC
Q 007334 402 NLMRAHVVALVLDAEEV-----------RAV----EEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTG 466 (607)
Q Consensus 402 ~i~~ad~~llViD~~~~-----------~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (607)
++..+|++|+|+|+++. ... ..+.|++||+||+|+.+...... +..+.++...+
T Consensus 72 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~-----------~~~~~~~~~~~ 140 (165)
T d1z06a1 72 YYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPT-----------DLAQKFADTHS 140 (165)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCH-----------HHHHHHHHHTT
T ss_pred eecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhH-----------HHHHHHHHHCC
Confidence 67899999999999986 111 24689999999999976532111 11111122236
Q ss_pred CCEEEcccCC---CCCHHHHHHHH
Q 007334 467 IPVVFTSALE---GRGRIAVMHQV 487 (607)
Q Consensus 467 ~~~v~iSA~~---g~gv~~l~~~i 487 (607)
++++++||++ +.||+++|+.|
T Consensus 141 ~~~~e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 141 MPLFETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp CCEEECCSSSGGGGSCHHHHHHHH
T ss_pred CEEEEEecccCCcCcCHHHHHHHh
Confidence 7999999997 55999999876
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=3.1e-19 Score=166.26 Aligned_cols=157 Identities=11% Similarity=0.120 Sum_probs=111.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeC--CeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLG--DLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||+++++...+. ..... +..+........+ ...+.+|||+|++... ....
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~--~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~ 68 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFP--ENYVP--TVFENYTASFEIDTQRIELSLWDTSGSPYYD----------NVRP 68 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC--SSCCC--CSEEEEEEEEECSSCEEEEEEEEECCSGGGT----------TTGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC--CccCC--ceeecccccccccceEEeecccccccccccc----------cccc
Confidence 47999999999999999999987652 22222 3334444444443 3578899999988332 2334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHH--HHHHHHhhCCCCcEEEEecCCCcccC------------CcCcHHHHHHHHHhc
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLE--VGKWLRKHAPQIKPIVAMNKCESLHN------------GTGSLAGAAAESLML 264 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~D~~~~------------~~~~~~~~~~~~~~~ 264 (607)
.++..+|++++|+|++++.+..... +...+....++.|+++|+||+|+... ..+..++....+...
T Consensus 69 ~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~ 148 (179)
T d1m7ba_ 69 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 148 (179)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred chhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh
Confidence 5688999999999999877666522 33445555678999999999998642 223445555556666
Q ss_pred CCCCcEEeecCCCC-ChHHHHHHhccch
Q 007334 265 GFGDPIAISAETGL-GMTELYEALRPSV 291 (607)
Q Consensus 265 ~~~~~i~iSA~~g~-gi~eL~~~i~~~l 291 (607)
+...++++||++|. |++++|+.+...+
T Consensus 149 ~~~~y~E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 149 GAATYIECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 65567999999998 5999999887544
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.77 E-value=5.3e-19 Score=160.49 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=104.1
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|+|.+|||||||+|+|++.+..... .+..............+.+||+||.. .+......++
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~~ 65 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIVTTI------PTIGFNVETVEYKNISFTVWDVGGQD----------KIRPLWRHYF 65 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCCC------CCSSCCEEEEECSSCEEEEEECCCCG----------GGHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccc------cceeeEEEEEeeeeEEEEEecCCCcc----------cchhhhhhhh
Confidence 7999999999999999999987653221 12222334445677899999999998 3445566788
Q ss_pred hccCEEEEEEecCCCCCHhHHH--HHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHH-----HHhcCCCCcEEee
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLE--VGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAE-----SLMLGFGDPIAIS 273 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~-----~~~~~~~~~i~iS 273 (607)
..++++++++|.++..+..... +.+.+... ....|+++|+||+|+...... .+.... +...+. +++++|
T Consensus 66 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~--~~i~~~~~~~~~~~~~~-~~~~~S 142 (160)
T d1r8sa_ 66 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA--AEITDKLGLHSLRHRNW-YIQATC 142 (160)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCSSCCE-EEEECB
T ss_pred ccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccH--HHHHHHHHHHHHhhCCC-EEEEeE
Confidence 9999999999998866555421 22222222 346799999999998764321 111111 111222 568999
Q ss_pred cCCCCChHHHHHHhccc
Q 007334 274 AETGLGMTELYEALRPS 290 (607)
Q Consensus 274 A~~g~gi~eL~~~i~~~ 290 (607)
|++|+|+++++++|.+.
T Consensus 143 Aktg~gi~e~~~~l~~~ 159 (160)
T d1r8sa_ 143 ATSGDGLYEGLDWLSNQ 159 (160)
T ss_dssp TTTTBTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 99999999999998764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.76 E-value=1.6e-18 Score=164.97 Aligned_cols=161 Identities=14% Similarity=0.062 Sum_probs=105.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCC-------CceeeeeEE---------------------EEeeeCCeeE
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPD-------DHVTRDIRE---------------------GLAKLGDLRF 172 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~-------~~~T~~~~~---------------------~~~~~~~~~~ 172 (607)
.+|+++|+.++|||||+|+|++........... ..++++... .......+.+
T Consensus 9 ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 88 (205)
T d2qn6a3 9 VNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRI 88 (205)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEE
T ss_pred eEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEEE
Confidence 389999999999999999998732211110000 001111000 0000122468
Q ss_pred EEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-CHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCc
Q 007334 173 KVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-HPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGT 251 (607)
Q Consensus 173 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~ 251 (607)
.++||||+. ++...+...+..||++|+|+|+.++. ..+..+.+..+... .-.|+|+++||+|+.....
T Consensus 89 ~iiD~PGH~----------df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~ 157 (205)
T d2qn6a3 89 SFIDAPGHE----------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEE 157 (205)
T ss_dssp EEEECSCHH----------HHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECGGGSCHHH
T ss_pred EEeccchHH----------HHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc-CCceeeeccccCCCccchH
Confidence 999999998 78888888899999999999999997 55556666666665 1247889999999986432
Q ss_pred CcH-HHHHHH-HHhcCC--CCcEEeecCCCCChHHHHHHhccchH
Q 007334 252 GSL-AGAAAE-SLMLGF--GDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 252 ~~~-~~~~~~-~~~~~~--~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
... ...... ...... .+++++||++|.|+++|++.|.++++
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 158 ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence 111 111111 112222 25699999999999999999987765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.76 E-value=9.2e-19 Score=165.36 Aligned_cols=150 Identities=21% Similarity=0.221 Sum_probs=98.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCC--ceeecCCCCceeeeEEEEEE-----------------------EcCeEEEEEe
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQED--RVLVGPEAGLTRDSVRVHFE-----------------------YQGRTVYLVD 378 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~--~~~~~~~~gtT~~~~~~~~~-----------------------~~~~~~~liD 378 (607)
.++|+++|++|+|||||+|+|+|.. ........|.|.+....... ..+..+.++|
T Consensus 5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD 84 (195)
T d1kk1a3 5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence 3789999999999999999999743 22233344555544322221 1234688999
Q ss_pred cCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcCCc-EEEEEeCccCCCCcCchHHH
Q 007334 379 TAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEGRG-LVVIVNKMDLLSGRQNSALY 446 (607)
Q Consensus 379 TpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~ 446 (607)
|||+.++ ...+.+.+..+|++++|+|+.++ .....++| +|+++||+|+.+.......+
T Consensus 85 tPGh~~f----------~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~ 154 (195)
T d1kk1a3 85 APGHEAL----------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENY 154 (195)
T ss_dssp CSSHHHH----------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cchhhhh----------hHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHH
Confidence 9996443 13345667789999999999886 11123544 78899999998653222222
Q ss_pred HHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 447 KRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
+.+ .+.+.. .....+|++++||++|.|+++|++.|.+
T Consensus 155 ~~~----~~~~~~--~~~~~~~iIpiSA~~G~ni~~Ll~~I~~ 191 (195)
T d1kk1a3 155 RQI----KEFIEG--TVAENAPIIPISALHGANIDVLVKAIED 191 (195)
T ss_dssp HHH----HHHHTT--STTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHH----HHHhcc--ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 221 111111 1123579999999999999999988866
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=6.6e-18 Score=156.48 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=107.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC--eeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD--LRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
.+|+++|.+|||||||++++++..+... .+ ++.+.....+..++ ..+.+|||+|... .
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~f~~~--~~---t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~----------~----- 65 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGSYQVL--EK---TESEQYKKEMLVDGQTHLVLIREEAGAPD----------A----- 65 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSCCCCC--CC---SSCEEEEEEEEETTEEEEEEEEECSSCCC----------H-----
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCCc--CC---ccceeEEEEeecCceEEEEEEeecccccc----------c-----
Confidence 5899999999999999999998875322 12 33333344455555 5689999999872 1
Q ss_pred HHhhccCEEEEEEecCCCCCHhHH-HHHHHHHhh----CCCCcEEEEecCCCcccCC--cCcHHHHHHHHHhcCCCCcEE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDL-EVGKWLRKH----APQIKPIVAMNKCESLHNG--TGSLAGAAAESLMLGFGDPIA 271 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~-~~~~~l~~~----~~~~p~ilV~NK~D~~~~~--~~~~~~~~~~~~~~~~~~~i~ 271 (607)
.+++.+|++|+|+|++++.+.+.. .+.+++... ..+.|+++|+||.|+.... .....+....+.......+++
T Consensus 66 ~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e 145 (175)
T d2bmja1 66 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYE 145 (175)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEE
T ss_pred ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEE
Confidence 256789999999999988776663 355555443 2457899999988875432 233333333333433226799
Q ss_pred eecCCCCChHHHHHHhccchHH
Q 007334 272 ISAETGLGMTELYEALRPSVED 293 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l~~ 293 (607)
+||++|.|++++|..+.+.+..
T Consensus 146 ~SAk~~~~v~~~F~~l~~~i~~ 167 (175)
T d2bmja1 146 TCATYGLNVDRVFQEVAQKVVT 167 (175)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHH
T ss_pred eCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988876644
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=1.8e-18 Score=164.24 Aligned_cols=115 Identities=19% Similarity=0.154 Sum_probs=94.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceee----------eccC------CCCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREAL----------VYNT------PDDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~----------v~~~------~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
.+|+++|++++|||||+++|+.....+ ..+. .| +|.+.....+.+++.++.++||||+.
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rg--iTi~~~~~~~~~~~~~i~iiDtPGh~--- 78 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG--ITINTAHVEYETAKRHYSHVDCPGHA--- 78 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHT--CCCSCEEEEEECSSCEEEEEECCCSG---
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCC--eEEEeeEEEEEeCCeEEEEEeCCCch---
Confidence 379999999999999999997421100 0011 14 88888888999999999999999998
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCcccC
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLHN 249 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~~ 249 (607)
+|...+...+..||++|+|+|+.+|...++.+++..+... +.| +|+++||+|+.+.
T Consensus 79 -------df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~--gi~~iiv~iNK~D~~~~ 135 (204)
T d2c78a3 79 -------DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFMNKVDMVDD 135 (204)
T ss_dssp -------GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGCCC
T ss_pred -------hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEEecccCCC
Confidence 5677778899999999999999999999998888888887 666 6778999998763
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=6.5e-19 Score=163.54 Aligned_cols=154 Identities=27% Similarity=0.275 Sum_probs=108.6
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
.|+++|.||||||||+|+|++.+...+++.+++++..+......+...+..+|++|......... ..............
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 85 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAI-NRLMNKAASSSIGD 85 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHH-HHHHTCCTTSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhh-hhhhhhccccchhh
Confidence 48999999999999999999998888888888998888888888888999999999754311000 00000000111235
Q ss_pred ccEEEEEeccchh---------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCC
Q 007334 406 AHVVALVLDAEEV---------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALE 476 (607)
Q Consensus 406 ad~~llViD~~~~---------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~ 476 (607)
+|+++++.|+... .......|.++|+||+|...... . +............+.+++++||++
T Consensus 86 ~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~---~-------~~~~~~~~~~~~~~~~~~~vSA~~ 155 (179)
T d1egaa1 86 VELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKA---D-------LLPHLQFLASQMNFLDIVPISAET 155 (179)
T ss_dssp EEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHH---H-------HHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cceeEEEEecCccchhHHHHHHHhhhccCceeeeeeeeeccchhh---h-------hhhHhhhhhhhcCCCCEEEEeCcC
Confidence 7888889888764 23346789999999999886521 1 111122222334567999999999
Q ss_pred CCCHHHHHHHHHHH
Q 007334 477 GRGRIAVMHQVIDT 490 (607)
Q Consensus 477 g~gv~~l~~~i~~~ 490 (607)
|.|+++|++.|.+.
T Consensus 156 g~gi~~L~~~i~~~ 169 (179)
T d1egaa1 156 GLNVDTIAAIVRKH 169 (179)
T ss_dssp TTTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh
Confidence 99999998887654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.74 E-value=9.3e-18 Score=153.32 Aligned_cols=147 Identities=21% Similarity=0.205 Sum_probs=106.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||++||.||||||||+|+|++.....+.+..+ .....+..++..+.++|++|....... ....+
T Consensus 5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 70 (169)
T d1upta_ 5 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLTSIRPY----------WRCYY 70 (169)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS----EEEEEEEETTEEEEEEEECCCGGGGGG----------GGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcceecccc----eeeeeeccCceEEEEeecccccccccc----------chhhh
Confidence 4899999999999999999999886544333333 334455678889999999997544211 11334
Q ss_pred hhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCC
Q 007334 404 MRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIP 468 (607)
Q Consensus 404 ~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (607)
..++++++++|+.+. .......|+++++||+|+.......+ +...+...+....+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~--------i~~~~~~~~~~~~~~~ 142 (169)
T d1upta_ 71 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE--------MANSLGLPALKDRKWQ 142 (169)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHH--------HHHHHTGGGCTTSCEE
T ss_pred hhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHH--------HHHHHHHHHHhcCCCE
Confidence 568999999998754 11234689999999999987643222 2223333444556789
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 007334 469 VVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 469 ~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
+++|||++|+||+++|+.|.+.+.
T Consensus 143 ~~~~SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 143 IFKTSATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.74 E-value=3.3e-18 Score=162.80 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=93.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCC--CceeeeEE--EEE--------------------------EEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA--GLTRDSVR--VHF--------------------------EYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~--gtT~~~~~--~~~--------------------------~~~~~~ 373 (607)
.++|+++|+.++|||||+++|++.......... ..+.+... ..+ ...++.
T Consensus 8 ~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 87 (205)
T d2qn6a3 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRR 87 (205)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEE
T ss_pred CeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceEE
Confidence 479999999999999999999974221100000 00000000 000 112357
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------hHHhcC-CcEEEEEeCccCCCCcC
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------RAVEEG-RGLVVIVNKMDLLSGRQ 441 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------~~~~~~-~p~ivv~NK~Dl~~~~~ 441 (607)
+.++||||+.++. ..+..++..||++|+|+|+.++ .....+ +|+||++||||+.+...
T Consensus 88 ~~iiD~PGH~df~----------~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~ 157 (205)
T d2qn6a3 88 ISFIDAPGHEVLM----------ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEE 157 (205)
T ss_dssp EEEEECSCHHHHH----------HHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHH
T ss_pred EEEeccchHHHHH----------hhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchH
Confidence 8999999975541 3345677789999999999875 112235 48899999999986532
Q ss_pred chHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHHHHHHHH
Q 007334 442 NSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l~~~i~~ 489 (607)
.... ...+...+. . .....+|++++||++|.|+++|++.|..
T Consensus 158 ~~~~----~~~~~~~l~-~-~~~~~~p~ipiSA~~g~nI~~L~e~i~~ 199 (205)
T d2qn6a3 158 ALSQ----YRQIKQFTK-G-TWAENVPIIPVSALHKINIDSLIEGIEE 199 (205)
T ss_dssp HHHH----HHHHHHHHT-T-STTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHH----HHHHHHHhc-c-ccCCCCeEEEEeCCCCCChHHHHHHHHh
Confidence 2111 111111111 1 2234689999999999999999987765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.2e-17 Score=155.49 Aligned_cols=176 Identities=18% Similarity=0.199 Sum_probs=102.9
Q ss_pred cccccccCCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchh-HH
Q 007334 112 FTKIDINLLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGS-IL 190 (607)
Q Consensus 112 ~~~~~~~~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~ 190 (607)
+++.+....++|+|+|+||||||||+|+|++.+........+ +|...........+......++++......... ..
T Consensus 8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T d1puia_ 8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTP--GRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKW 85 (188)
T ss_dssp GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC---------------CCEEEEEEETTEEEEECCCCC------CCHHHH
T ss_pred hhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccc--cceeeccceecccccceeeeecccccchhhhhhhhh
Confidence 345566678999999999999999999999987655544443 444444444444566666666655442222111 11
Q ss_pred HHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcH-HHH-HHHHHhc-CCC
Q 007334 191 DRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSL-AGA-AAESLML-GFG 267 (607)
Q Consensus 191 ~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~-~~~-~~~~~~~-~~~ 267 (607)
..............+.++.+.|...+....+......+... ..++++|+||+|+........ ... ....... +..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (188)
T d1puia_ 86 QRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS--NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 163 (188)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred hhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhc--cccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCC
Confidence 11222222334455567777888888777776666666665 679999999999886422111 111 1111122 233
Q ss_pred CcEEeecCCCCChHHHHHHhccch
Q 007334 268 DPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
+++++||++|.|+++|++.|.+.+
T Consensus 164 ~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 164 QVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHh
Confidence 679999999999999999987654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.74 E-value=8.6e-18 Score=155.44 Aligned_cols=155 Identities=17% Similarity=0.089 Sum_probs=104.6
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHH
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTA 198 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~ 198 (607)
...+|+|+|.+|||||||+|+|.+.+........+ . ........+..+.++|++|..... ....
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~d~~~~~~~~----------~~~~ 77 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--S----NVEEIVINNTRFLMWDIGGQESLR----------SSWN 77 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC--S----SCEEEEETTEEEEEEECCC----C----------GGGH
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCccccccc--e----eEEEEeecceEEEEeccccccccc----------cchh
Confidence 34789999999999999999999988765543332 2 223344578899999999987322 2334
Q ss_pred HHhhccCEEEEEEecCCCCCHhHHHH-HHHHH-h-hCCCCcEEEEecCCCcccCCcCcHHHHHHHHH--hcC--CCCcEE
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLDLEV-GKWLR-K-HAPQIKPIVAMNKCESLHNGTGSLAGAAAESL--MLG--FGDPIA 271 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~~~~-~~~l~-~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~--~~~--~~~~i~ 271 (607)
..+..++++++|+|.++..+...... ..... . ...+.|+++|+||+|+..... ..+...... ... ..++++
T Consensus 78 ~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~ 155 (177)
T d1zj6a1 78 TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQA 155 (177)
T ss_dssp HHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEE
T ss_pred hhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEE
Confidence 56778999999999998776655322 11111 1 134789999999999876533 122221111 111 115789
Q ss_pred eecCCCCChHHHHHHhccch
Q 007334 272 ISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 272 iSA~~g~gi~eL~~~i~~~l 291 (607)
+||++|+|+++++++|.+.+
T Consensus 156 ~Sa~tg~Gi~e~~~~L~~~l 175 (177)
T d1zj6a1 156 CCALTGEGLCQGLEWMMSRL 175 (177)
T ss_dssp CBTTTTBTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.73 E-value=2.4e-18 Score=160.20 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=99.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCe--EEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGR--TVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
.||+++|.+|||||||+++++... + ...+..|..+.....+..++. .+.+|||+|....... ...+
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~-f-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 70 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDC-F-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------RPLS 70 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC-C-CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT----------GGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC-C-CCccCCceeecccccccccceEEeecccccccccccccc----------ccch
Confidence 689999999999999999999763 2 233444444555555555555 5569999997544211 1235
Q ss_pred HhhccEEEEEeccchh--------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHH-HHhcHHHHHhhCC-CCCC
Q 007334 403 LMRAHVVALVLDAEEV--------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRV-KEAVPQEIQTVIP-QVTG 466 (607)
Q Consensus 403 i~~ad~~llViD~~~~--------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 466 (607)
++.+|++|+|+|.++. .....+.|+++|+||+|+............. ...+..+..+.++ ....
T Consensus 71 ~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~ 150 (179)
T d1m7ba_ 71 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGA 150 (179)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred hhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCC
Confidence 6789999999999886 1122578999999999986532110000000 0011111111111 1124
Q ss_pred CCEEEcccCCCC-CHHHHHHHHHHHH
Q 007334 467 IPVVFTSALEGR-GRIAVMHQVIDTY 491 (607)
Q Consensus 467 ~~~v~iSA~~g~-gv~~l~~~i~~~~ 491 (607)
.++++|||++|. |++++|+.+++.+
T Consensus 151 ~~y~E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 151 ATYIECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp SEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 689999999998 5999999888754
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.73 E-value=1.5e-17 Score=159.55 Aligned_cols=146 Identities=25% Similarity=0.301 Sum_probs=100.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCcee--------------------------------ecCCCCceeeeEEEEEEEcC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVL--------------------------------VGPEAGLTRDSVRVHFEYQG 371 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~--------------------------------~~~~~gtT~~~~~~~~~~~~ 371 (607)
-++|+++|+.++|||||+++|+...... .....|.|.+.....+.+.+
T Consensus 9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 88 (222)
T d1zunb3 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 88 (222)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccc
Confidence 4789999999999999999997432111 11122455555556677788
Q ss_pred eEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCc-EEEEEeCccCCCCc
Q 007334 372 RTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRG-LVVIVNKMDLLSGR 440 (607)
Q Consensus 372 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p-~ivv~NK~Dl~~~~ 440 (607)
+.+.|+||||+.++. ..+.+.+..+|++++|+|+.++ .....+++ +|+++||||+++..
T Consensus 89 ~~~~iiD~PGH~dfv----------~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~ 158 (222)
T d1zunb3 89 RKFIIADTPGHEQYT----------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFD 158 (222)
T ss_dssp EEEEEEECCCSGGGH----------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred eEEEEEeccchhhhh----------hhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEcccccccc
Confidence 999999999986652 3445677789999999999987 22345654 89999999998653
Q ss_pred CchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHH
Q 007334 441 QNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
.+.++...+.+..-+.+.......++++|+||++|.|+.
T Consensus 159 --~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~ 197 (222)
T d1zunb3 159 --ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV 197 (222)
T ss_dssp --HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred --ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence 234444444443333332222244688999999999984
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=4.2e-18 Score=154.76 Aligned_cols=149 Identities=17% Similarity=0.216 Sum_probs=101.8
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
||+++|+||||||||+|+|++.....+.+..+++.. ...+.+....++||+|...... ....++..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 67 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARR----------LWKDYFPE 67 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGG----------GGGGGCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEE----EeccCCeeEEEEeeccchhhhh----------hHhhhhhh
Confidence 799999999999999999999876666555555443 4456778899999999654421 11234557
Q ss_pred ccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 406 AHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 406 ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
++++++++|.++. .......|+++++||.|+.......+..+.+ ..........+.....++++
T Consensus 68 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~ 146 (166)
T d2qtvb1 68 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSAL-GLLNTTGSQRIEGQRPVEVF 146 (166)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHH-TCSSCCC---CCSSCCEEEE
T ss_pred eeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHh-hhhhhhHHHhhcccCCCEEE
Confidence 9999999999875 1112578999999999997654322222211 11111112223334456899
Q ss_pred EcccCCCCCHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVID 489 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~ 489 (607)
+|||++|+|++++|++|.+
T Consensus 147 ~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 147 MCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp EEBTTTTBSHHHHHHHHTT
T ss_pred EeeCCCCCCHHHHHHHHhC
Confidence 9999999999999998753
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=3.6e-17 Score=152.21 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=90.6
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchh-HHHHHH
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASL-SVMQSR 400 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~-~~~~~~ 400 (607)
+..++|+++|+||||||||+|+|++.+........++|.+.........+......++++............. ......
T Consensus 14 ~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (188)
T d1puia_ 14 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 93 (188)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhhh
Confidence 3468999999999999999999999876666677777777666666666766666666654333111111111 111111
Q ss_pred HHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEE
Q 007334 401 KNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVV 470 (607)
Q Consensus 401 ~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 470 (607)
......+.++.+.|+... .......++++++||+|+.+........+.+ .+.+.. .....+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~~~~~~~~----~~~l~~---~~~~~~~i 166 (188)
T d1puia_ 94 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMV----REAVLA---FNGDVQVE 166 (188)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHH----HHHHGG---GCSCEEEE
T ss_pred hhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHHHHHHHHH----HHHHHh---hCCCCcEE
Confidence 222234455555555543 2334678999999999998753332222222 222222 22346899
Q ss_pred EcccCCCCCHHHHHHHHHHH
Q 007334 471 FTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 471 ~iSA~~g~gv~~l~~~i~~~ 490 (607)
++||++|.|+++|++.|.+.
T Consensus 167 ~vSA~~g~Gid~L~~~i~~~ 186 (188)
T d1puia_ 167 TFSSLKKQGVDKLRQKLDTW 186 (188)
T ss_dssp ECBTTTTBSHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999887654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=5.1e-17 Score=147.40 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=102.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHh
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVL 201 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 201 (607)
+|+|||++|||||||+|+|++..++.+. .|...........+..+.++||+|.... ......++
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~------~t~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 65 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQ------PTWHPTSEELAIGNIKFTTFDLGGHIQA----------RRLWKDYF 65 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCC------CCCSCEEEEECCTTCCEEEEECCCSGGG----------GGGGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeee------ceeeEeEEEeccCCeeEEEEeeccchhh----------hhhHhhhh
Confidence 6999999999999999999998765332 3344444556667889999999998732 22334456
Q ss_pred hccCEEEEEEecCCCCCHhHHH-HHHHHHhh--CCCCcEEEEecCCCcccCCcCcHHHHHHHHHh--------cC---CC
Q 007334 202 AKTQFAIFMIDVRSGLHPLDLE-VGKWLRKH--APQIKPIVAMNKCESLHNGTGSLAGAAAESLM--------LG---FG 267 (607)
Q Consensus 202 ~~ad~vl~VvD~s~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~--------~~---~~ 267 (607)
..++.+++++|.++........ +....... ..+.|+++++||.|+..... ..+....... .. ..
T Consensus 66 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T d2qtvb1 66 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS--EAELRSALGLLNTTGSQRIEGQRPV 143 (166)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCC--HHHHHHHHTCSSCCC---CCSSCCE
T ss_pred hheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCC--HHHHHHHhhhhhhhHHHhhcccCCC
Confidence 7899999999998865554421 11111111 34789999999999876422 1211111110 00 11
Q ss_pred CcEEeecCCCCChHHHHHHhcc
Q 007334 268 DPIAISAETGLGMTELYEALRP 289 (607)
Q Consensus 268 ~~i~iSA~~g~gi~eL~~~i~~ 289 (607)
.+++|||++|+|++|++++|.+
T Consensus 144 ~~~~~SA~tg~Gv~e~~~~l~~ 165 (166)
T d2qtvb1 144 EVFMCSVVMRNGYLEAFQWLSQ 165 (166)
T ss_dssp EEEEEBTTTTBSHHHHHHHHTT
T ss_pred EEEEeeCCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.68 E-value=1.4e-16 Score=152.62 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=107.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeee----------cc--------------------CCCCceeeeeEEEEeeeCC
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALV----------YN--------------------TPDDHVTRDIREGLAKLGD 169 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v----------~~--------------------~~~~~~T~~~~~~~~~~~~ 169 (607)
..+|+++|+.++|||||+++|+.....+. .. ......|.+.........+
T Consensus 9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~ 88 (222)
T d1zunb3 9 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 88 (222)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccc
Confidence 46799999999999999999974211100 00 0011244455555666788
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc-EEEEecCCCccc
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK-PIVAMNKCESLH 248 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~D~~~ 248 (607)
+.+.++||||+. .+...+...+..+|++++|+|+.++...+..+.+..+... +++ +|+++||+|+..
T Consensus 89 ~~~~iiD~PGH~----------dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~--gv~~iiv~vNK~D~~~ 156 (222)
T d1zunb3 89 RKFIIADTPGHE----------QYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL--GIKHIVVAINKMDLNG 156 (222)
T ss_dssp EEEEEEECCCSG----------GGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEEECTTTTT
T ss_pred eEEEEEeccchh----------hhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHc--CCCEEEEEEEcccccc
Confidence 899999999998 5666677788999999999999999999998887777776 544 789999999986
Q ss_pred CCcCcHHH----HHHHHHhcCCC----CcEEeecCCCCChHH
Q 007334 249 NGTGSLAG----AAAESLMLGFG----DPIAISAETGLGMTE 282 (607)
Q Consensus 249 ~~~~~~~~----~~~~~~~~~~~----~~i~iSA~~g~gi~e 282 (607)
..+..... ....+...++. +++|+||.+|.|+.+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 157 FDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred ccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence 43322222 12233345553 348999999999844
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.68 E-value=4e-17 Score=149.02 Aligned_cols=153 Identities=19% Similarity=0.167 Sum_probs=106.1
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+|||++|||||||+|+|++.++..+. .|...........+..+.++|++|..... ......
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 69 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGEVVTTI------PTIGFNVETVTYKNLKFQVWDLGGLTSIR----------PYWRCY 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCCCC------CCSSEEEEEEEETTEEEEEEEECCCGGGG----------GGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccee------cccceeeeeeccCceEEEEeecccccccc----------ccchhh
Confidence 57999999999999999999998764322 33344445556688999999999988332 223345
Q ss_pred hhccCEEEEEEecCCCCCHhHHH--HHHHHHh-hCCCCcEEEEecCCCcccCCcCcHHHHHHHH-----HhcCCCCcEEe
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLE--VGKWLRK-HAPQIKPIVAMNKCESLHNGTGSLAGAAAES-----LMLGFGDPIAI 272 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~--~~~~l~~-~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~-----~~~~~~~~i~i 272 (607)
+..++.+++++|+.+........ +...+.. .....|+++|+||+|+...... .+..... ..... +++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~--~~i~~~~~~~~~~~~~~-~~~~~ 146 (169)
T d1upta_ 70 YSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMANSLGLPALKDRKW-QIFKT 146 (169)
T ss_dssp CTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHHTGGGCTTSCE-EEEEC
T ss_pred hhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH--HHHHHHHHHHHHhcCCC-EEEEE
Confidence 67889999999998766655522 1222222 1346889999999999865321 1111111 11122 57999
Q ss_pred ecCCCCChHHHHHHhccchH
Q 007334 273 SAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 273 SA~~g~gi~eL~~~i~~~l~ 292 (607)
||++|+|++++++.|.+.+.
T Consensus 147 SA~~g~gv~e~~~~l~~~l~ 166 (169)
T d1upta_ 147 SATKGTGLDEAMEWLVETLK 166 (169)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999987664
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.65 E-value=1.5e-16 Score=147.50 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=96.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKN 402 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 402 (607)
+..||++||.+|||||||+|+|++.....+.+..+.+.. .+.+++..+.++|++|....... ....
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 77 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE----ELTIAGMTFTTFDLGGHIQARRV----------WKNY 77 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE----EEEETTEEEEEEEECC----CCG----------GGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcceeccccccee----EEEecccccccccccchhhhhhH----------Hhhh
Confidence 357999999999999999999998765555444444433 34667888999999997554211 1245
Q ss_pred HhhccEEEEEeccchh---------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHH-----HhhCC
Q 007334 403 LMRAHVVALVLDAEEV---------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEI-----QTVIP 462 (607)
Q Consensus 403 i~~ad~~llViD~~~~---------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 462 (607)
...++++++++|.++. .....++|+++++||.|+..........+.+ ....... .....
T Consensus 78 ~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~ 156 (186)
T d1f6ba_ 78 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMF-GLYGQTTGKGSVSLKEL 156 (186)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHH-TCTTTCCCSSCCCTTTC
T ss_pred hcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHH-hhcccchhhhhhhHHHh
Confidence 5679999999998875 1223579999999999987653322211111 0000000 00001
Q ss_pred CCCCCCEEEcccCCCCCHHHHHHHHHHH
Q 007334 463 QVTGIPVVFTSALEGRGRIAVMHQVIDT 490 (607)
Q Consensus 463 ~~~~~~~v~iSA~~g~gv~~l~~~i~~~ 490 (607)
...+.++++|||++|+|++++|+++.+.
T Consensus 157 ~~~~~~~~~~SA~tg~Gi~e~~~~l~~~ 184 (186)
T d1f6ba_ 157 NARPLEVFMCSVLKRQGYGEGFRWMAQY 184 (186)
T ss_dssp CSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred hcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 1224579999999999999999988753
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=2.1e-16 Score=149.80 Aligned_cols=146 Identities=23% Similarity=0.277 Sum_probs=94.7
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLG 279 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~g 279 (607)
+.+.|.+++|+.+..|..... .+-++|--. ..++|.++|+||+|+...............+..++ +++.+||++|.|
T Consensus 8 vANiD~vliV~s~~~P~~~~~-~ldR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~-~v~~vSa~~~~g 85 (225)
T d1u0la2 8 VANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLY-PIVKTSAKTGMG 85 (225)
T ss_dssp EESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTS-CEEECCTTTCTT
T ss_pred cccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccce-eEEEeccccchh
Confidence 467899999999877543322 222333211 23889999999999986432111122233344555 789999999999
Q ss_pred hHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCC---C
Q 007334 280 MTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPE---A 356 (607)
Q Consensus 280 i~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~---~ 356 (607)
+++|.+.+.. -..+++|.+|||||||+|+|++.....++.. .
T Consensus 86 ~~~L~~~l~~-----------------------------------kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~ 130 (225)
T d1u0la2 86 IEELKEYLKG-----------------------------------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKL 130 (225)
T ss_dssp HHHHHHHHSS-----------------------------------SEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred HhhHHHHhcC-----------------------------------CeEEEECCCCCCHHHHHHhhcchhhhhccCccccc
Confidence 9999887631 2478999999999999999998754444332 2
Q ss_pred ----CceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 357 ----GLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 357 ----gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
.||+..... .+.+ .-.|+||||+..+.
T Consensus 131 ~rGrHTTt~~~l~--~l~~-gg~iiDTPG~r~~~ 161 (225)
T d1u0la2 131 QRGRHTTTTAQLL--KFDF-GGYVVDTPGFANLE 161 (225)
T ss_dssp -----CCCSCCEE--ECTT-SCEEESSCSSTTCC
T ss_pred CCCCccccceeEE--EECC-CcEEEeCCcccccc
Confidence 255544332 2322 24799999997764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.64 E-value=4.7e-16 Score=144.06 Aligned_cols=154 Identities=15% Similarity=0.110 Sum_probs=97.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+|||++|||||||+|+|++.......... ......+...+..+..+|++|..... .....
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 76 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL------HPTSEELTIAGMTFTTFDLGGHIQAR----------RVWKN 76 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCC------CCSCEEEEETTEEEEEEEECC----C----------CGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcceeccc------ccceeEEEecccccccccccchhhhh----------hHHhh
Confidence 468999999999999999999988754332221 12223345578889999999987332 23345
Q ss_pred HhhccCEEEEEEecCCCCCHhHHH-HHHHHH--hhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcC-----------
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLDLE-VGKWLR--KHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLG----------- 265 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~~~-~~~~l~--~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~----------- 265 (607)
....++.+++++|.++........ ...... ....+.|+++++||.|+..... ............
T Consensus 77 ~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~ 154 (186)
T d1f6ba_ 77 YLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS--EERLREMFGLYGQTTGKGSVSLK 154 (186)
T ss_dssp GGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC--HHHHHHHHTCTTTCCCSSCCCTT
T ss_pred hhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCC--HHHHHHHHhhcccchhhhhhhHH
Confidence 678899999999998765555422 111111 1134789999999999876432 122111111100
Q ss_pred -----CCCcEEeecCCCCChHHHHHHhccch
Q 007334 266 -----FGDPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 266 -----~~~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
...+++|||++|+|++|++++|.+.+
T Consensus 155 ~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i 185 (186)
T d1f6ba_ 155 ELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185 (186)
T ss_dssp TCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred HhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence 01368999999999999999998754
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.64 E-value=9.2e-16 Score=145.66 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=75.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEE-EEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHF-EYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~-~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.|+++|+||||||||+|+|++.......+..+++.... .+ ...+..+.+|||||... +.......++.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~ 70 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIY--KVNNNRGNSLTLIDLPGHES---------LRFQLLDRFKS 70 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEE--ECSSTTCCEEEEEECCCCHH---------HHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEE--EEeeeeeeeeeeeecccccc---------ccchhhhhhhh
Confidence 58999999999999999999876554443333333322 11 12456899999999532 22233446678
Q ss_pred hccEEEEEeccchh------------hH------HhcCCcEEEEEeCccCCCCcCchH
Q 007334 405 RAHVVALVLDAEEV------------RA------VEEGRGLVVIVNKMDLLSGRQNSA 444 (607)
Q Consensus 405 ~ad~~llViD~~~~------------~~------~~~~~p~ivv~NK~Dl~~~~~~~~ 444 (607)
.+|++++|+|+++. .. ....+|++||+||+|+.......+
T Consensus 71 ~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~ 128 (207)
T d2fh5b1 71 SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKL 128 (207)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHH
T ss_pred hccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHH
Confidence 89999999999874 00 123579999999999987654433
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=2e-16 Score=153.36 Aligned_cols=147 Identities=22% Similarity=0.251 Sum_probs=107.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc------------------------------eeecCCCCceeeeEEEEEEEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR------------------------------VLVGPEAGLTRDSVRVHFEYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~------------------------------~~~~~~~gtT~~~~~~~~~~~~~~ 373 (607)
.+.|+++|+.++|||||+.+|+.... .......|+|.+.....+.+.+++
T Consensus 6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 85 (239)
T d1f60a3 6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 85 (239)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence 37999999999999999999963110 011234588999888899999999
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCcc
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKMD 435 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~D 435 (607)
+.|+||||+.++. ..+.+.+..+|++|||+|+.++ .+...++| +|+++||+|
T Consensus 86 i~iiDtPGH~df~----------~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD 155 (239)
T d1f60a3 86 VTVIDAPGHRDFI----------KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD 155 (239)
T ss_dssp EEEEECCCCTTHH----------HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred EEEEECCCcHHHH----------HHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCC
Confidence 9999999987762 2344667789999999999875 12234665 788999999
Q ss_pred CCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
+.+.+ .+.++.+.+.+..-+...-.....++++++||..|.|+.+
T Consensus 156 ~~~~d--~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 156 SVKWD--ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp GGTTC--HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCCCC--HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence 98653 2345555555544444443334457899999999999754
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.63 E-value=8.7e-17 Score=156.65 Aligned_cols=152 Identities=25% Similarity=0.257 Sum_probs=94.1
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCc------------------------------eeecCCCCceeeeEEEEEEEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDR------------------------------VLVGPEAGLTRDSVRVHFEYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~------------------------------~~~~~~~gtT~~~~~~~~~~~~~~ 373 (607)
.+.|+++|+.++|||||+.+|+.... .......|.|.+.....+.+.+..
T Consensus 24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 103 (245)
T d1r5ba3 24 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 103 (245)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred ceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccce
Confidence 46899999999999999999952110 112334467777766777888999
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-----------------hHHhcCCc-EEEEEeCcc
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-----------------RAVEEGRG-LVVIVNKMD 435 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-----------------~~~~~~~p-~ivv~NK~D 435 (607)
+.++||||+.++. ..+.+.+..+|++++|+|+.++ .....++| +++++||+|
T Consensus 104 i~~iDtPGH~df~----------~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD 173 (245)
T d1r5ba3 104 FSLLDAPGHKGYV----------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMD 173 (245)
T ss_dssp EEECCCCC---------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTT
T ss_pred eeeecccccccch----------hhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCC
Confidence 9999999987662 2234566789999999999875 12234555 889999999
Q ss_pred CCCCcCchHHHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHHHHH
Q 007334 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIAVMH 485 (607)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~ 485 (607)
++........++.+.+.+...+.+.... ...+|++|+||++|+|+.++++
T Consensus 174 ~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 174 EPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence 9865444455555555555444433221 1236899999999999976654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.61 E-value=1.9e-15 Score=148.40 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=96.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+|+|.||||||||+|+|+|.+.+.++..++ +|++.........+..+.+|||||+.+....... .......
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~--~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~---~~~~i~~ 106 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQS--EGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDM---ALNIIKS 106 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSC--CCSSCEEEEEEETTEEEEEEECCCSEETTEECHH---HHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCCceeecCCCC--cceeEEEEEEEeccEEEEEEeeecccCCcchHHH---HHHHHHH
Confidence 3689999999999999999999999888887776 8999988888899999999999999744322221 1112222
Q ss_pred --HhhccCEEEEEEecCC-CCCHhHHHHHHHHHhhCC---CCcEEEEecCCCcccCC
Q 007334 200 --VLAKTQFAIFMIDVRS-GLHPLDLEVGKWLRKHAP---QIKPIVAMNKCESLHNG 250 (607)
Q Consensus 200 --~~~~ad~vl~VvD~s~-~~~~~~~~~~~~l~~~~~---~~p~ilV~NK~D~~~~~ 250 (607)
.....|+++||++++. ..+..+...++++.+.++ ..++|+|+||+|.....
T Consensus 107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~ 163 (257)
T d1h65a_ 107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 163 (257)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence 2345688999998866 478888777777776532 25899999999988643
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=3.1e-15 Score=146.85 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=80.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCc-----------eeec------CCCCceeeeEEEEEEEcCeEEEEEecCCCccccc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDR-----------VLVG------PEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREK 387 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~-----------~~~~------~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 387 (607)
.+|+++|+.++|||||+.+|+.... ..+. ..-|+|.......++|++.++.|+||||+.++.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~- 85 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT- 85 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH-
Confidence 3699999999999999999973211 1111 223667777778899999999999999998873
Q ss_pred ccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCC
Q 007334 388 EKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLS 438 (607)
Q Consensus 388 ~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~ 438 (607)
..+..++..+|++|+|+|+.++ ...+.++|.|+++||+|...
T Consensus 86 ---------~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 86 ---------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG 137 (276)
T ss_dssp ---------TTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTT
T ss_pred ---------HHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccc
Confidence 1245677889999999999987 34457999999999999854
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.61 E-value=1.7e-15 Score=148.37 Aligned_cols=116 Identities=17% Similarity=0.191 Sum_probs=94.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceee-----eccCC----------CCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREAL-----VYNTP----------DDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~-----v~~~~----------~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
+++|+|+|+.++|||||+.+|+.....+ +.+.. ....|.......+.+.+.+++++||||+.
T Consensus 2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~--- 78 (267)
T d2dy1a2 2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG--- 78 (267)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG---
T ss_pred eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchh---
Confidence 4689999999999999999996322111 11100 01146666677888999999999999999
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
+|...+...+.-+|.+|+|+|+.+|...+...+.+.+++. ++|.++++||+|..
T Consensus 79 -------dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~--~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 79 -------DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL--GLPRMVVVTKLDKG 132 (267)
T ss_dssp -------GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred -------hhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhc--cccccccccccccc
Confidence 6777888899999999999999999999999998999887 89999999999964
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=1.4e-15 Score=149.34 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=91.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccce-----------eeeccCC----CCceeeeeEEEEeeeCCeeEEEecCCCCcccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRRE-----------ALVYNTP----DDHVTRDIREGLAKLGDLRFKVLDSAGLETEA 184 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~-----------~~v~~~~----~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~ 184 (607)
+.+|+|+|+.++|||||+.+|+-... ..+.+.. ....|.......+.|++.+++|+||||+.
T Consensus 6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~--- 82 (276)
T d2bv3a2 6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHV--- 82 (276)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSS---
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchh---
Confidence 56899999999999999999973211 1111100 01245556667788999999999999999
Q ss_pred CchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 185 TSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
+|...+...+.-+|.+|+|+|+.+|+..+...+.+++++. ++|.|+++||+|..
T Consensus 83 -------dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~--~lP~i~fINKmDr~ 136 (276)
T d2bv3a2 83 -------DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY--KVPRIAFANKMDKT 136 (276)
T ss_dssp -------SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTT--TCCEEEEEECTTST
T ss_pred -------hhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHc--CCCEEEEEeccccc
Confidence 4555667788899999999999999999998888998887 89999999999954
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.60 E-value=4.3e-15 Score=145.51 Aligned_cols=102 Identities=26% Similarity=0.285 Sum_probs=81.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee-----------ecC------CCCceeeeEEEEEEEcCeEEEEEecCCCcccccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL-----------VGP------EAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKE 388 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~-----------~~~------~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 388 (607)
.|+++|+.++|||||+.+|+.....+ +.+ .-|+|.+.....+.|++.++.|+||||+.++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~-- 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV-- 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhh--
Confidence 59999999999999999996432111 111 23667777778899999999999999987763
Q ss_pred cCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCC
Q 007334 389 KGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLL 437 (607)
Q Consensus 389 ~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~ 437 (607)
..+..+++.+|++|+|+|+.++ .....++|.++++||+|..
T Consensus 82 --------~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 82 --------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 132 (267)
T ss_dssp --------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred --------hhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence 3456788889999999999987 3446799999999999974
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1e-15 Score=145.23 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=86.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
.|+|+|||+||||||||+|+|++.+.. ++ +|++.....+...+..+.+|||||+.... ..+......
T Consensus 3 ~p~V~lvG~~n~GKTSLln~l~~~~~~-----~~--tt~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~~ 69 (209)
T d1nrjb_ 3 QPSIIIAGPQNSGKTSLLTLLTTDSVR-----PT--VVSQEPLSAADYDGSGVTLVDFPGHVKLR------YKLSDYLKT 69 (209)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCC-----CB--CCCSSCEEETTGGGSSCEEEECCCCGGGT------HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-----Ce--EEecceEEEEEeCCeEEEEEecccccchh------hHHHHHHHH
Confidence 589999999999999999999987642 33 77888888888889999999999988322 133444556
Q ss_pred HhhccCEEEEEEecCCCCCH-hH--HHHHHHH---Hhh-CCCCcEEEEecCCCcccCC
Q 007334 200 VLAKTQFAIFMIDVRSGLHP-LD--LEVGKWL---RKH-APQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~-~~--~~~~~~l---~~~-~~~~p~ilV~NK~D~~~~~ 250 (607)
....++.+++++|+...... .+ ..+.+++ ... ..+.|+++|+||+|+....
T Consensus 70 ~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~ 127 (209)
T d1nrjb_ 70 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 127 (209)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence 67788999999998764322 22 1121222 222 3478999999999998654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=2e-15 Score=142.15 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=97.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.+|||||||+++|.. .....| |.......+.+.+..+.+|||+|+......+ ..+.
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f----~~~~~p--TiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~----------~~~~ 65 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRI----IHGQDP--TKGIHEYDFEIKNVPFKMVDVGGQRSERKRW----------FECF 65 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH----HHSCCC--CSSEEEEEEEETTEEEEEEEECC-------C----------TTSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc----CCCCCC--eeeeEEEEEeeeeeeeeeecccceeeecccc----------cccc
Confidence 47999999999999999999942 222233 2233445678899999999999976543211 2345
Q ss_pred hhccEEEEEeccchh-------------------------hHHhcCCcEEEEEeCccCCCCc--------------CchH
Q 007334 404 MRAHVVALVLDAEEV-------------------------RAVEEGRGLVVIVNKMDLLSGR--------------QNSA 444 (607)
Q Consensus 404 ~~ad~~llViD~~~~-------------------------~~~~~~~p~ivv~NK~Dl~~~~--------------~~~~ 444 (607)
+.++++++|+|.++. .....+.|+++++||+|+.+.. ....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~ 145 (200)
T d1zcba2 66 DSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPH 145 (200)
T ss_dssp TTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTT
T ss_pred cccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcc
Confidence 679999999998864 0113588999999999985321 0111
Q ss_pred HHHHHHHhcHHHHHhhCCC--CCCCCEEEcccCCCCCHHHHHHHHHHHHHHH
Q 007334 445 LYKRVKEAVPQEIQTVIPQ--VTGIPVVFTSALEGRGRIAVMHQVIDTYQKW 494 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~ 494 (607)
..+...+.+...+...... ...+.++++||+++.||+++|+.+.+.+-+.
T Consensus 146 ~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~ 197 (200)
T d1zcba2 146 CLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 197 (200)
T ss_dssp CHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence 1222222222222222111 2235567899999999999999988776443
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.59 E-value=1.4e-15 Score=146.37 Aligned_cols=148 Identities=24% Similarity=0.280 Sum_probs=97.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCce------------------------------eecCCCCceeeeEEEEEEEcCeE
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRV------------------------------LVGPEAGLTRDSVRVHFEYQGRT 373 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~------------------------------~~~~~~gtT~~~~~~~~~~~~~~ 373 (607)
.++|+++|+.++|||||+.+|+..... ......|.|.+.....+++++..
T Consensus 3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~ 82 (224)
T d1jnya3 3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 82 (224)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence 378999999999999999999632100 12234577777777788889999
Q ss_pred EEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hH-------HhcC-CcEEEEEeCcc
Q 007334 374 VYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RA-------VEEG-RGLVVIVNKMD 435 (607)
Q Consensus 374 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~-------~~~~-~p~ivv~NK~D 435 (607)
+.|+||||+.++. ..+...+.-+|++|+|+|+.++ +. ...+ .++|+++||+|
T Consensus 83 i~iiDtPGH~df~----------~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D 152 (224)
T d1jnya3 83 FTIIDAPGHRDFV----------KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 152 (224)
T ss_dssp EEECCCSSSTTHH----------HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGG
T ss_pred eEEeeCCCcHHHH----------HHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEccc
Confidence 9999999987662 2345667789999999999875 00 1123 46899999999
Q ss_pred CCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHH
Q 007334 436 LLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRI 481 (607)
Q Consensus 436 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~ 481 (607)
+.........++.+...+..-+...-.....++++++||..|.|+.
T Consensus 153 ~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~ 198 (224)
T d1jnya3 153 LTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 198 (224)
T ss_dssp GSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred CCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence 9865444455555554444333333233456789999999999984
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=4.4e-15 Score=154.96 Aligned_cols=161 Identities=12% Similarity=0.105 Sum_probs=102.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCc----eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHH
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDR----VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQ 398 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~----~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~ 398 (607)
.+++|+|+|+||||||||+|+|+|... .......+||++...... .++..+.||||||+..... ..+.+ .
T Consensus 55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~--~~~~~---~ 128 (400)
T d1tq4a_ 55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNF--PPDTY---L 128 (400)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSC--CHHHH---H
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccc--cHHHH---H
Confidence 368999999999999999999998542 344455678887654332 2455789999999865421 11111 1
Q ss_pred HHHHHhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCC---------cCchHHHHHHHHhcHHHHHhhC
Q 007334 399 SRKNLMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSG---------RQNSALYKRVKEAVPQEIQTVI 461 (607)
Q Consensus 399 ~~~~i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~ 461 (607)
....+..+|++|++.|..-. .....++|+++|+||+|.... .......+.+++.+...+...
T Consensus 129 ~~~~~~~~d~~l~~~~~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~- 207 (400)
T d1tq4a_ 129 EKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN- 207 (400)
T ss_dssp HHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHhhhhcceEEEEecCCCCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc-
Confidence 22345678999999886432 334568999999999996411 112233444444444433332
Q ss_pred CCCCCCCEEEcccCC--CCCHHHHHHHHHHHH
Q 007334 462 PQVTGIPVVFTSALE--GRGRIAVMHQVIDTY 491 (607)
Q Consensus 462 ~~~~~~~~v~iSA~~--g~gv~~l~~~i~~~~ 491 (607)
.....+++.+|+.. ..|+.+|.+.+.+.+
T Consensus 208 -~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L 238 (400)
T d1tq4a_ 208 -GIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 238 (400)
T ss_dssp -TCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred -CCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence 23356789999764 468999988887764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=5.3e-15 Score=140.28 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=78.8
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEe-eeCCeeEEEecCCCCccccCchhHHHHHH-HHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLA-KLGDLRFKVLDSAGLETEATSGSILDRTA-GMTA 198 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~-~~~~~~~~liDTpG~~~~~~~~~~~~~~~-~~~~ 198 (607)
.+|+|+|.+|||||||+|+|++.+..... +. .+.+.....+ ...+..+.+|||||+. .+. ....
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~~~~~~--~t--~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~ 66 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQYRDTQ--TS--ITDSSAIYKVNNNRGNSLTLIDLPGHE----------SLRFQLLD 66 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCCCCBC--CC--CSCEEEEEECSSTTCCEEEEEECCCCH----------HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccc--CC--eeEEEEEEEEeeeeeeeeeeeeccccc----------cccchhhh
Confidence 36999999999999999999987764332 32 2222222222 2356789999999987 332 3445
Q ss_pred HHhhccCEEEEEEecCCCCCHhH---HHHHHHHHhh---CCCCcEEEEecCCCcccCC
Q 007334 199 NVLAKTQFAIFMIDVRSGLHPLD---LEVGKWLRKH---APQIKPIVAMNKCESLHNG 250 (607)
Q Consensus 199 ~~~~~ad~vl~VvD~s~~~~~~~---~~~~~~l~~~---~~~~p~ilV~NK~D~~~~~ 250 (607)
.++..+|.+++|+|+++...... ..+.+++... ..+.|+++|+||+|+....
T Consensus 67 ~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~ 124 (207)
T d2fh5b1 67 RFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 124 (207)
T ss_dssp HHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred hhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence 67899999999999987433221 2233444332 3467899999999998644
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=3.3e-15 Score=139.65 Aligned_cols=152 Identities=19% Similarity=0.272 Sum_probs=100.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|..|||||||+++|.... .|+++ .....+......+.+|||+|..+.... ...++
T Consensus 2 e~KivllG~~~vGKTsl~~r~~~~~------~~t~~--~~~~~~~~~~~~~~i~D~~Gq~~~~~~----------~~~~~ 63 (195)
T d1svsa1 2 EVKLLLLGAGESGKSTIVKQMKIIH------EAGTG--IVETHFTFKDLHFKMFDVGGQRSERKK----------WIHCF 63 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH------SCCCS--EEEEEEEETTEEEEEEEECCSGGGGGG----------GGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC------CCCcc--EEEEEEEeeeeeeeeeccccccccccc----------hhhcc
Confidence 3799999999999999999998542 22222 233456788899999999997655311 22567
Q ss_pred hhccEEEEEeccchh-------------------------hHHhcCCcEEEEEeCccCCCCc----Cc---------hHH
Q 007334 404 MRAHVVALVLDAEEV-------------------------RAVEEGRGLVVIVNKMDLLSGR----QN---------SAL 445 (607)
Q Consensus 404 ~~ad~~llViD~~~~-------------------------~~~~~~~p~ivv~NK~Dl~~~~----~~---------~~~ 445 (607)
+.++++++|+|.++. .....+.|+++++||+|+.... .. ...
T Consensus 64 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~ 143 (195)
T d1svsa1 64 EGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNT 143 (195)
T ss_dssp TTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSS
T ss_pred cCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCccc
Confidence 789999999998875 0113468999999999963210 00 001
Q ss_pred HHHHHHhcHHHHHhhC--CCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 446 YKRVKEAVPQEIQTVI--PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 446 ~~~~~~~~~~~~~~~~--~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
.......+...+.... .....++++++||++|.||+++|+.+.+.+.+
T Consensus 144 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~ 193 (195)
T d1svsa1 144 YEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 193 (195)
T ss_dssp HHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence 1111112222222221 11234567899999999999999998876543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=7.3e-16 Score=146.20 Aligned_cols=106 Identities=21% Similarity=0.291 Sum_probs=81.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHh
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM 404 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~ 404 (607)
.+|+|+|+||||||||+|+|++.+ ..+++|++.....+.+++..+.+|||||+.... .........++.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~-----~~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~~~~~ 72 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDS-----VRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLR------YKLSDYLKTRAK 72 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS-----CCCBCCCSSCEEETTGGGSSCEEEECCCCGGGT------HHHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----CCCeEEecceEEEEEeCCeEEEEEecccccchh------hHHHHHHHHHhh
Confidence 489999999999999999999875 246788888777777888899999999975442 112233445666
Q ss_pred hccEEEEEeccchh-------------------hHHhcCCcEEEEEeCccCCCCcC
Q 007334 405 RAHVVALVLDAEEV-------------------RAVEEGRGLVVIVNKMDLLSGRQ 441 (607)
Q Consensus 405 ~ad~~llViD~~~~-------------------~~~~~~~p~ivv~NK~Dl~~~~~ 441 (607)
.++.+++++|+... .....++|+++|+||+|+.+...
T Consensus 73 ~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~ 128 (209)
T d1nrjb_ 73 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 128 (209)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred hccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCc
Confidence 78999999998752 11235899999999999987543
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=4.4e-15 Score=154.95 Aligned_cols=163 Identities=15% Similarity=0.084 Sum_probs=106.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhccce----eeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRRE----ALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAG 195 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~----~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~ 195 (607)
..+|+|+|+||||||||+|+|+|... +......+ +|++...... .++..+.+|||||+........ .+.
T Consensus 56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~--tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~---~~~- 128 (400)
T d1tq4a_ 56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVE--VTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPD---TYL- 128 (400)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------CCCEEEEC-SSCTTEEEEECCCGGGSSCCHH---HHH-
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCC--Cceeeeeeec-cCCCeEEEEeCCCcccccccHH---HHH-
Confidence 46899999999999999999998542 22222222 6777654332 3556799999999985432211 111
Q ss_pred HHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCC-------cCcHHH--------HHHH
Q 007334 196 MTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNG-------TGSLAG--------AAAE 260 (607)
Q Consensus 196 ~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~-------~~~~~~--------~~~~ 260 (607)
....+..+|+++++.| ...+..+.++.+++++. ++|+++|+||+|..... ....+. ....
T Consensus 129 -~~~~~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~ 203 (400)
T d1tq4a_ 129 -EKMKFYEYDFFIIISA--TRFKKNDIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 203 (400)
T ss_dssp -HHTTGGGCSEEEEEES--SCCCHHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred -HHhhhhcceEEEEecC--CCCCHHHHHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHH
Confidence 1234667888888776 45788888899999887 78999999999965210 001111 1122
Q ss_pred HHhcC--CCCcEEeecCC--CCChHHHHHHhccchHHH
Q 007334 261 SLMLG--FGDPIAISAET--GLGMTELYEALRPSVEDY 294 (607)
Q Consensus 261 ~~~~~--~~~~i~iSA~~--g~gi~eL~~~i~~~l~~~ 294 (607)
+...+ .++++.+|... ..|+++|.+.+.+.+++.
T Consensus 204 l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~ 241 (400)
T d1tq4a_ 204 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 241 (400)
T ss_dssp HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence 23333 33568888754 568999999998887653
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=1.1e-14 Score=136.59 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=102.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
.+||+++|.+|||||||+++|..... ...++.|. + ...+......+.+|||+|+...... ...++
T Consensus 2 e~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~--~--~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~~ 66 (200)
T d2bcjq2 2 ELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGI--I--EYPFDLQSVIFRMVDVGGQRSERRK----------WIHCF 66 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSC--E--EEEEECSSCEEEEEECCCSTTGGGG----------GGGGC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeE--E--EEEEeccceeeeecccccccccccc----------ccccc
Confidence 37999999999999999999986643 23333332 2 2345667889999999997655321 12456
Q ss_pred hhccEEEEEeccchh-------------------------hHHhcCCcEEEEEeCccCCCCcCc--------------hH
Q 007334 404 MRAHVVALVLDAEEV-------------------------RAVEEGRGLVVIVNKMDLLSGRQN--------------SA 444 (607)
Q Consensus 404 ~~ad~~llViD~~~~-------------------------~~~~~~~p~ivv~NK~Dl~~~~~~--------------~~ 444 (607)
+.++++++|+|.++. .....+.|+++++||+|+...... ..
T Consensus 67 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 146 (200)
T d2bcjq2 67 ENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQR 146 (200)
T ss_dssp SSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSS
T ss_pred cccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCch
Confidence 789999999999874 011257899999999998532110 00
Q ss_pred HHHHHHHhcHHHHHhh-CCCCCCCCEEEcccCCCCCHHHHHHHHHHHHHHHh
Q 007334 445 LYKRVKEAVPQEIQTV-IPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQKWC 495 (607)
Q Consensus 445 ~~~~~~~~~~~~~~~~-~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~~~ 495 (607)
........+....... ......+.++++||++|.||+++|+.+.+.+.+.+
T Consensus 147 ~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n 198 (200)
T d2bcjq2 147 DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 198 (200)
T ss_dssp CHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence 1111111111111111 11223456789999999999999999988776544
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.54 E-value=4.9e-15 Score=145.43 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=86.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
+++|+++|+||||||||+|+|+|.+.+.+++.+++|+++......++|..+.+|||||+.+..... .+...........
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~-~~~~~~i~~~~~~ 110 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN-DMALNIIKSFLLD 110 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEEC-HHHHHHHHHHTTT
T ss_pred CcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchH-HHHHHHHHHHHhc
Confidence 589999999999999999999999989999999999999999999999999999999987652111 1111111111122
Q ss_pred hhccEEEEEeccchh----------h----HH--hcCCcEEEEEeCccCCCCc
Q 007334 404 MRAHVVALVLDAEEV----------R----AV--EEGRGLVVIVNKMDLLSGR 440 (607)
Q Consensus 404 ~~ad~~llViD~~~~----------~----~~--~~~~p~ivv~NK~Dl~~~~ 440 (607)
...|++++|++.+.. . .+ ...+++|+|+||+|.....
T Consensus 111 ~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~ 163 (257)
T d1h65a_ 111 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 163 (257)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred CCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence 357888888876542 1 11 1236899999999988643
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.53 E-value=4.3e-15 Score=149.02 Aligned_cols=91 Identities=22% Similarity=0.174 Sum_probs=74.8
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 385 (607)
..++|+|||.||||||||+|+|++.+...++++|+||.++..+.+.+.+ ..+.++|.||+...
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g 88 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 88 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence 3589999999999999999999988766789999999999888877654 47889999999876
Q ss_pred -ccccCcchhHHHHHHHHHhhccEEEEEeccch
Q 007334 386 -EKEKGPASLSVMQSRKNLMRAHVVALVLDAEE 417 (607)
Q Consensus 386 -~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~ 417 (607)
....+.. .+.+..++.||++++|+|+..
T Consensus 89 A~~g~GLG----n~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 89 ASTGVGLG----NAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCSSSSSC----HHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccH----HHHHHHhhccceeEEEEeccC
Confidence 3233322 456789999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.53 E-value=1.9e-15 Score=143.54 Aligned_cols=145 Identities=19% Similarity=0.284 Sum_probs=91.0
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhh-CCCCcEEEEecCCCcccCCcCc--HHHHHHHHHhcCCCCcEEeecCCC
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKH-APQIKPIVAMNKCESLHNGTGS--LAGAAAESLMLGFGDPIAISAETG 277 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~~--~~~~~~~~~~~~~~~~i~iSA~~g 277 (607)
+.+.|.+++|+.+.+|..... .+-++|--. ..+++.++|+||+|+..+.... .......+..+|+ +++.+||+++
T Consensus 8 vANiD~~~iV~s~~~P~~~~~-~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~-~v~~~Sa~~~ 85 (231)
T d1t9ha2 8 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY-DVYLTSSKDQ 85 (231)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC-CEEECCHHHH
T ss_pred ccccCEEEEEEECCCCCCCHH-HHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccc-cceeeecCCh
Confidence 467899999999877643222 233333221 3488999999999998643211 1112233455688 8999999999
Q ss_pred CChHHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhcCCceeecCCC-
Q 007334 278 LGMTELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEA- 356 (607)
Q Consensus 278 ~gi~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~- 356 (607)
.|+++|.+.+.. -..+++|.+|||||||+|+|++.....++...
T Consensus 86 ~gl~~L~~~l~~-----------------------------------~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 86 DSLADIIPHFQD-----------------------------------KTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTCTTTGGGGTT-----------------------------------SEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hHHHHHHHhhcc-----------------------------------ceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 999887654421 24679999999999999999987544433322
Q ss_pred ------CceeeeEEEEEEEcCeEEEEEecCCCcccc
Q 007334 357 ------GLTRDSVRVHFEYQGRTVYLVDTAGWLQRE 386 (607)
Q Consensus 357 ------gtT~~~~~~~~~~~~~~~~liDTpG~~~~~ 386 (607)
.||+.... +..+| -.|+||||++.+.
T Consensus 131 ~~~rGrHTTt~~~l--~~~~g--g~iiDTPG~r~~~ 162 (231)
T d1t9ha2 131 HLGRGKHTTRHVEL--IHTSG--GLVADTPGFSSLE 162 (231)
T ss_dssp --------CCCCCE--EEETT--EEEESSCSCSSCC
T ss_pred ccCCCceeeeeEEE--EecCC--CEEEECCcccccc
Confidence 24444322 23444 2588999998774
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.50 E-value=1.6e-14 Score=140.28 Aligned_cols=152 Identities=18% Similarity=0.215 Sum_probs=89.5
Q ss_pred CEEEEecCCCCchhHHHHHhhcccee------------------------------eeccCCCCceeeeeEEEEeeeCCe
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREA------------------------------LVYNTPDDHVTRDIREGLAKLGDL 170 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~------------------------------~v~~~~~~~~T~~~~~~~~~~~~~ 170 (607)
.+|+++|+.++|||||+.+|+..... ......+ .|.+.......+.+.
T Consensus 25 iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg--~ti~~~~~~~~~~~~ 102 (245)
T d1r5ba3 25 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKG--KTVEVGRAYFETEHR 102 (245)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEECSSE
T ss_pred eEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccC--ccccccccccccccc
Confidence 47999999999999999999421100 0011122 455555556667888
Q ss_pred eEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCH-------hHHHHHHHHHhhCCCC-cEEEEec
Q 007334 171 RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHP-------LDLEVGKWLRKHAPQI-KPIVAMN 242 (607)
Q Consensus 171 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~-------~~~~~~~~l~~~~~~~-p~ilV~N 242 (607)
.+.++||||+. .+...+...+..+|++++|+|+.+|..+ +..+.+..+... ++ ++++++|
T Consensus 103 ~i~~iDtPGH~----------df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~--~i~~iiv~iN 170 (245)
T d1r5ba3 103 RFSLLDAPGHK----------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ--GINHLVVVIN 170 (245)
T ss_dssp EEEECCCCC---------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT--TCSSEEEEEE
T ss_pred eeeeecccccc----------cchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc--CCCeEEEEEE
Confidence 99999999998 5667777888999999999999987533 344555555554 44 4789999
Q ss_pred CCCcccCCcC--cHHHHH----HHHHhc-CCC-----CcEEeecCCCCChHHHHHH
Q 007334 243 KCESLHNGTG--SLAGAA----AESLML-GFG-----DPIAISAETGLGMTELYEA 286 (607)
Q Consensus 243 K~D~~~~~~~--~~~~~~----~~~~~~-~~~-----~~i~iSA~~g~gi~eL~~~ 286 (607)
|+|+...... ...+.. ..+... ++. +++|+||++|+||.++++.
T Consensus 171 KmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s 226 (245)
T d1r5ba3 171 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS 226 (245)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence 9999753211 111111 111222 221 4699999999999876554
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.50 E-value=2.6e-14 Score=138.14 Aligned_cols=148 Identities=21% Similarity=0.196 Sum_probs=105.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceee------------------------------eccCCCCceeeeeEEEEeeeCCe
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREAL------------------------------VYNTPDDHVTRDIREGLAKLGDL 170 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~------------------------------v~~~~~~~~T~~~~~~~~~~~~~ 170 (607)
.+|+++|+.++|||||+.+|+-....+ .....| .|.+.....+.+.++
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rG--iTi~~~~~~~~~~~~ 84 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERG--ITIDIALWKFETPKY 84 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTT--CCCSCSCEEEECSSE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcce--eccccceeEeccCCE
Confidence 489999999999999999996211000 011234 788888888889999
Q ss_pred eEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCC-------CHhHHHHHHHHHhhCCCCc-EEEEec
Q 007334 171 RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGL-------HPLDLEVGKWLRKHAPQIK-PIVAMN 242 (607)
Q Consensus 171 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~-------~~~~~~~~~~l~~~~~~~p-~ilV~N 242 (607)
++.++||||+. +|...+...+..+|.+|+|+|+..+. ..+..+.+..++.. ++| +|+++|
T Consensus 85 ~i~iiDtPGH~----------df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~--gv~~iiv~iN 152 (239)
T d1f60a3 85 QVTVIDAPGHR----------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL--GVRQLIVAVN 152 (239)
T ss_dssp EEEEEECCCCT----------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT--TCCEEEEEEE
T ss_pred EEEEEECCCcH----------HHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc--CCCeEEEEEE
Confidence 99999999999 67777788899999999999998763 33455555555555 555 788999
Q ss_pred CCCcccCCcCcHHH----HHHHHHhcCCC----CcEEeecCCCCChHH
Q 007334 243 KCESLHNGTGSLAG----AAAESLMLGFG----DPIAISAETGLGMTE 282 (607)
Q Consensus 243 K~D~~~~~~~~~~~----~~~~~~~~~~~----~~i~iSA~~g~gi~e 282 (607)
|+|+.........+ ....+...++. .++++||.+|.|+-+
T Consensus 153 KmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~ 200 (239)
T d1f60a3 153 KMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 200 (239)
T ss_dssp CGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence 99988643322222 12223333442 458999999998754
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=2.3e-14 Score=134.59 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=99.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||++++.- ..... .|.......+.+.+..+.+|||+|+. .+...+..
T Consensus 2 ~iKivllG~~~vGKTsll~r~~f-----~~~~~---pTiG~~~~~~~~~~~~~~~~D~~gq~----------~~~~~~~~ 63 (200)
T d1zcba2 2 LVKILLLGAGESGKSTFLKQMRI-----IHGQD---PTKGIHEYDFEIKNVPFKMVDVGGQR----------SERKRWFE 63 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH-----HHSCC---CCSSEEEEEEEETTEEEEEEEECC-----------------CTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhc-----CCCCC---CeeeeEEEEEeeeeeeeeeeccccee----------eecccccc
Confidence 45899999999999999999931 11111 34455666778899999999999998 45555667
Q ss_pred HhhccCEEEEEEecCCCCCHhH--------HHHHHHHHh----h-CCCCcEEEEecCCCcccCCc---------------
Q 007334 200 VLAKTQFAIFMIDVRSGLHPLD--------LEVGKWLRK----H-APQIKPIVAMNKCESLHNGT--------------- 251 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~~~~--------~~~~~~l~~----~-~~~~p~ilV~NK~D~~~~~~--------------- 251 (607)
+++.++.+++++|.++...... .+...++.. . ..+.|+++|+||+|+.....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~ 143 (200)
T d1zcba2 64 CFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD 143 (200)
T ss_dssp SCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred cccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCC
Confidence 8899999999999988654311 122222222 1 35789999999999864210
Q ss_pred -CcHHHHH----HHHHhcC----CC--CcEEeecCCCCChHHHHHHhccchH
Q 007334 252 -GSLAGAA----AESLMLG----FG--DPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 252 -~~~~~~~----~~~~~~~----~~--~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
...+... ..+.... -. .++.+||+++.||+++|+.+.+.+-
T Consensus 144 ~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~ 195 (200)
T d1zcba2 144 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 195 (200)
T ss_dssp TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence 0111111 1122111 11 1356899999999999999877653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=1.2e-14 Score=135.85 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=100.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|++||..|||||||+++|....+. |.......+......+.+|||+|++ .+...+..+
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~~~----------t~~~~~~~~~~~~~~~~i~D~~Gq~----------~~~~~~~~~ 62 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIHEA----------GTGIVETHFTFKDLHFKMFDVGGQR----------SERKKWIHC 62 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHSC----------CCSEEEEEEEETTEEEEEEEECCSG----------GGGGGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC----------CccEEEEEEEeeeeeeeeecccccc----------ccccchhhc
Confidence 47999999999999999999865431 1122334556788999999999998 455566778
Q ss_pred hhccCEEEEEEecCCCCCHhH--------HH-HHHH---HHh-hCCCCcEEEEecCCCcccCCc---------------C
Q 007334 201 LAKTQFAIFMIDVRSGLHPLD--------LE-VGKW---LRK-HAPQIKPIVAMNKCESLHNGT---------------G 252 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~--------~~-~~~~---l~~-~~~~~p~ilV~NK~D~~~~~~---------------~ 252 (607)
+..++++++|+|.++..+... .+ ...| +.. .....|+++|+||+|+...+. .
T Consensus 63 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~ 142 (195)
T d1svsa1 63 FEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSN 142 (195)
T ss_dssp CTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCS
T ss_pred ccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcc
Confidence 999999999999987543321 11 1122 221 134689999999999743210 1
Q ss_pred cHHHH----HHHHHhcC----CC--CcEEeecCCCCChHHHHHHhccch
Q 007334 253 SLAGA----AAESLMLG----FG--DPIAISAETGLGMTELYEALRPSV 291 (607)
Q Consensus 253 ~~~~~----~~~~~~~~----~~--~~i~iSA~~g~gi~eL~~~i~~~l 291 (607)
..... ...+.... .. .++++||++|.||+++|+.+.+.+
T Consensus 143 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i 191 (195)
T d1svsa1 143 TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191 (195)
T ss_dssp SHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence 11111 11122211 11 245799999999999999887755
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=9.8e-15 Score=136.96 Aligned_cols=155 Identities=13% Similarity=0.105 Sum_probs=104.2
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHH
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANV 200 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 200 (607)
.+|+++|.+|||||||++++....+.. . .|.......+......+.+|||+|+. .+...+..+
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~~~---~----pTiG~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~ 65 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHGSG---V----PTTGIIEYPFDLQSVIFRMVDVGGQR----------SERRKWIHC 65 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTSSC---C----CCCSCEEEEEECSSCEEEEEECCCST----------TGGGGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCC---C----ceeeEEEEEEeccceeeeeccccccc----------ccccccccc
Confidence 479999999999999999998776431 1 23334445566788899999999998 344455667
Q ss_pred hhccCEEEEEEecCCCCCH---------h--HH-HHHHHHHhh-CCCCcEEEEecCCCcccCCcC---------------
Q 007334 201 LAKTQFAIFMIDVRSGLHP---------L--DL-EVGKWLRKH-APQIKPIVAMNKCESLHNGTG--------------- 252 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~---------~--~~-~~~~~l~~~-~~~~p~ilV~NK~D~~~~~~~--------------- 252 (607)
+..++.+++|+|.++.... . .. .+...+... ..+.|+++|+||+|+......
T Consensus 66 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 145 (200)
T d2bcjq2 66 FENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQ 145 (200)
T ss_dssp CSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCS
T ss_pred ccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCc
Confidence 8999999999999874321 1 11 133334322 457899999999998642210
Q ss_pred -cHHHH----HHHHHhcCCC-----CcEEeecCCCCChHHHHHHhccchH
Q 007334 253 -SLAGA----AAESLMLGFG-----DPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 253 -~~~~~----~~~~~~~~~~-----~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
..... ...+...... .++++||++|.|++++|+.|.+.+.
T Consensus 146 ~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~ 195 (200)
T d2bcjq2 146 RDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 195 (200)
T ss_dssp SCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence 01111 1111121110 2468999999999999999977664
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.43 E-value=2e-13 Score=130.89 Aligned_cols=149 Identities=19% Similarity=0.170 Sum_probs=95.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcccee------------------------------eeccCCCCceeeeeEEEEeeeCCe
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREA------------------------------LVYNTPDDHVTRDIREGLAKLGDL 170 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~------------------------------~v~~~~~~~~T~~~~~~~~~~~~~ 170 (607)
.+|+++|+.++|||||+.+|+..... ......+ .|.+......++++.
T Consensus 4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg--~ti~~~~~~~~~~~~ 81 (224)
T d1jnya3 4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERG--VTINLTFMRFETKKY 81 (224)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECSSC
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCC--ccccceEEEEecCCc
Confidence 37999999999999999999631100 0011223 566666667778899
Q ss_pred eEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCH-------hHHHHHHHHHhhCCCCcEEEEecC
Q 007334 171 RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHP-------LDLEVGKWLRKHAPQIKPIVAMNK 243 (607)
Q Consensus 171 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~-------~~~~~~~~l~~~~~~~p~ilV~NK 243 (607)
.+.++||||+. .|...+...+.-+|++|+|+|+.+|... +..+.+..++.. ...++|+++||
T Consensus 82 ~i~iiDtPGH~----------df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~~~~iIv~iNK 150 (224)
T d1jnya3 82 FFTIIDAPGHR----------DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNK 150 (224)
T ss_dssp EEEECCCSSST----------THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEEC
T ss_pred eeEEeeCCCcH----------HHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-CCCceEEEEEc
Confidence 99999999999 6778888889999999999999998533 222333333333 23468899999
Q ss_pred CCcccCCcCc--HHH----HHHHHHhcCCC----CcEEeecCCCCChHH
Q 007334 244 CESLHNGTGS--LAG----AAAESLMLGFG----DPIAISAETGLGMTE 282 (607)
Q Consensus 244 ~D~~~~~~~~--~~~----~~~~~~~~~~~----~~i~iSA~~g~gi~e 282 (607)
+|+....... .+. ........++. +++++||.+|.|+.+
T Consensus 151 ~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 151 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred ccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence 9987532211 111 11222333432 358999999999854
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=4.3e-14 Score=143.25 Aligned_cols=88 Identities=27% Similarity=0.244 Sum_probs=48.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEE------------------------EcCeEEEEEecC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFE------------------------YQGRTVYLVDTA 380 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~------------------------~~~~~~~liDTp 380 (607)
++|++||.||||||||+|+|++. ...++++|+||.++..+... +.+.++.++|+|
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~-~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~p 79 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLV-DVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CcEeEECCCCCCHHHHHHHHHCC-CCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECC
Confidence 47999999999999999999987 57899999999998665432 122468899999
Q ss_pred CCcccccccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 381 GWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 381 G~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
|+...... + .-...+....++.+|++++|+|+.
T Consensus 80 Gli~ga~~-g--~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 80 GLVPGAHE-G--RGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp ------------------CCCSSTTCSEEEEEEETT
T ss_pred Ccccchhc-c--cchHHHHHHhhccceEEEEEeccc
Confidence 98765211 1 112234456778999999999985
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.42 E-value=9.8e-14 Score=137.71 Aligned_cols=89 Identities=27% Similarity=0.296 Sum_probs=65.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcC-----------------eEEEEEecCCCccc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQG-----------------RTVYLVDTAGWLQR 385 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~ 385 (607)
+.++|+|||.||||||||+|+|++.+ ..+.++|+||.++..+.+.+.+ ..+.++|.||+...
T Consensus 1 m~~~~GivG~Pn~GKSTlf~~lt~~~-~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g 79 (278)
T d1jala1 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (278)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHCCC-CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence 35899999999999999999999874 6789999999999888776543 25779999999876
Q ss_pred -ccccCcchhHHHHHHHHHhhccEEEEEeccc
Q 007334 386 -EKEKGPASLSVMQSRKNLMRAHVVALVLDAE 416 (607)
Q Consensus 386 -~~~~~~~~~~~~~~~~~i~~ad~~llViD~~ 416 (607)
....+.. .+.++++++||++++|+|+.
T Consensus 80 a~~g~Glg----~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 80 ASKGEGLG----NKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHHHGGGT----CCHHHHHHTCSEEEEEEECS
T ss_pred cccCCCcc----HHHHHHHHhccceEEEeecc
Confidence 2222221 23468899999999999873
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.39 E-value=2.1e-13 Score=130.52 Aligned_cols=153 Identities=17% Similarity=0.205 Sum_probs=100.2
Q ss_pred CceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHH
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNL 403 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i 403 (607)
..||+++|.+|||||||++++.... ..++.|+ ....+.+++..+.+||++|+......+ ..+.
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~---~~pTiG~----~~~~~~~~~~~~~~~D~~Gq~~~r~~w----------~~~~ 68 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILH---VVLTSGI----FETKFQVDKVNFHMFDVGGQRDERRKW----------IQCF 68 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH---CCCCCSC----EEEEEEETTEEEEEEECCCSTTTTTGG----------GGGC
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCC---cCCCCCe----EEEEEEECcEEEEEEecCccceeccch----------hhhc
Confidence 4799999999999999999997442 2233443 334567889999999999976553222 2455
Q ss_pred hhccEEEEEeccchh--------------h-----------HHhcCCcEEEEEeCccCCCCcC------c----------
Q 007334 404 MRAHVVALVLDAEEV--------------R-----------AVEEGRGLVVIVNKMDLLSGRQ------N---------- 442 (607)
Q Consensus 404 ~~ad~~llViD~~~~--------------~-----------~~~~~~p~ivv~NK~Dl~~~~~------~---------- 442 (607)
..++++++|+|.++. . ....+.|++|++||+|+.+..- .
T Consensus 69 ~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~ 148 (221)
T d1azta2 69 NDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 148 (221)
T ss_dssp TTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGC
T ss_pred ccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCcccccc
Confidence 789999999998763 0 0124789999999999854310 0
Q ss_pred ------------hHHHHHHHHhcHHHHHhhC----CCCCCCCEEEcccCCCCCHHHHHHHHHHHHHH
Q 007334 443 ------------SALYKRVKEAVPQEIQTVI----PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQK 493 (607)
Q Consensus 443 ------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~~ 493 (607)
...+....+-+...+.+.. .....+.++++||..+.|+..+|..+.+.+-+
T Consensus 149 ~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~ 215 (221)
T d1azta2 149 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 215 (221)
T ss_dssp CCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred CCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence 0111112121222222111 11123456789999999999999988776544
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.35 E-value=1.3e-12 Score=126.29 Aligned_cols=161 Identities=17% Similarity=0.202 Sum_probs=91.9
Q ss_pred eEEEEcCCCCchhHHHHHhhc-----CCceeecCCCCceeeeEEEEEE--------------------------------
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ-----EDRVLVGPEAGLTRDSVRVHFE-------------------------------- 368 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~-----~~~~~~~~~~gtT~~~~~~~~~-------------------------------- 368 (607)
-|+|+|++|+|||||+++|+. .....+..-|+++.......++
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLMEKF 81 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHTTH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHHHHhHhhhccCCchhhhhHhHHhhH
Confidence 378999999999999999973 2223333334333221111110
Q ss_pred ----------EcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh---------------hHHhc
Q 007334 369 ----------YQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV---------------RAVEE 423 (607)
Q Consensus 369 ----------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~---------------~~~~~ 423 (607)
.....+.++||||+.+.... ...... .......+++++|+|+... .....
T Consensus 82 ~~~~~~~~~~~~~~~~~~id~~g~~~~~~~----~~~~~~-~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~ 156 (244)
T d1yrba1 82 NEYLNKILRLEKENDYVLIDTPGQMETFLF----HEFGVR-LMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL 156 (244)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCSSHHHHHH----SHHHHH-HHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccceeeeccccchhHHHH----HHHHHH-HHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh
Confidence 01235889999997554110 000011 1111246789999998754 11234
Q ss_pred CCcEEEEEeCccCCCCcCchHHHHH------HHHhc----------HHHHHhhC-CCCCCCCEEEcccCCCCCHHHHHHH
Q 007334 424 GRGLVVIVNKMDLLSGRQNSALYKR------VKEAV----------PQEIQTVI-PQVTGIPVVFTSALEGRGRIAVMHQ 486 (607)
Q Consensus 424 ~~p~ivv~NK~Dl~~~~~~~~~~~~------~~~~~----------~~~~~~~~-~~~~~~~~v~iSA~~g~gv~~l~~~ 486 (607)
..|.++|+||+|+...+........ +...+ ...+.... .....+|++++||++|+|+++|+..
T Consensus 157 ~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~ 236 (244)
T d1yrba1 157 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 236 (244)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHH
Confidence 7899999999999875432211100 00000 00000000 0123579999999999999999998
Q ss_pred HHHHH
Q 007334 487 VIDTY 491 (607)
Q Consensus 487 i~~~~ 491 (607)
|.+.+
T Consensus 237 l~e~~ 241 (244)
T d1yrba1 237 AYEHY 241 (244)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=5e-13 Score=135.02 Aligned_cols=117 Identities=20% Similarity=0.224 Sum_probs=85.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCC-------------CceeeeeEEEEeee----------------CCe
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPD-------------DHVTRDIREGLAKL----------------GDL 170 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~-------------~~~T~~~~~~~~~~----------------~~~ 170 (607)
+++|+|+|+.++|||||+.+|+.....+.....+ ...|.......+.+ ++.
T Consensus 17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 96 (341)
T d1n0ua2 17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 96 (341)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence 5689999999999999999997322211100000 11233322222221 345
Q ss_pred eEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCccc
Q 007334 171 RFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLH 248 (607)
Q Consensus 171 ~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~ 248 (607)
.++++||||+. .+...+...++-+|++++|+|+.+|+..+...+.+...+. ++|+++|+||+|...
T Consensus 97 ~inliDtPGh~----------dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~--~~p~i~viNKiDr~~ 162 (341)
T d1n0ua2 97 LINLIDSPGHV----------DFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE--RIKPVVVINKVDRAL 162 (341)
T ss_dssp EEEEECCCCCC----------SSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT--TCEEEEEEECHHHHH
T ss_pred EEEEEcCCCcH----------HHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc--CCCeEEEEECccccc
Confidence 69999999999 4566777888999999999999999999998888887776 889999999999764
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.32 E-value=1.6e-12 Score=125.65 Aligned_cols=161 Identities=17% Similarity=0.116 Sum_probs=94.7
Q ss_pred EEEEecCCCCchhHHHHHhhc-----cceeeeccCCCCceeeeeEEEEee------------------------------
Q 007334 122 TVMIIGRPNVGKSALFNRLIR-----RREALVYNTPDDHVTRDIREGLAK------------------------------ 166 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~-----~~~~~v~~~~~~~~T~~~~~~~~~------------------------------ 166 (607)
.|+|+|.+|+|||||+++|+. ++.+++...++ ++.......++
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~--~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG--VKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 79 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS--CSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcc--cccCCCcccchHHHHHHHHHHhHhhhccCCchhhhhHhHHh
Confidence 589999999999999999973 23344443333 21110000000
Q ss_pred ------------eCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHH-----HH
Q 007334 167 ------------LGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKW-----LR 229 (607)
Q Consensus 167 ------------~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~-----l~ 229 (607)
.....+.++||||+...... .............+.+++|+|+..+..+........ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~id~~g~~~~~~~-----~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~ 154 (244)
T d1yrba1 80 KFNEYLNKILRLEKENDYVLIDTPGQMETFLF-----HEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL 154 (244)
T ss_dssp THHHHHHHHHHHHHHCSEEEEECCSSHHHHHH-----SHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccccceeeeccccchhHHHH-----HHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH
Confidence 01235899999999832110 000111112234678999999988887776332211 12
Q ss_pred hhCCCCcEEEEecCCCcccCCcCcHHH--------HH------------------HHHH-hcCCCCcEEeecCCCCChHH
Q 007334 230 KHAPQIKPIVAMNKCESLHNGTGSLAG--------AA------------------AESL-MLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 230 ~~~~~~p~ilV~NK~D~~~~~~~~~~~--------~~------------------~~~~-~~~~~~~i~iSA~~g~gi~e 282 (607)
+. ..|.++|+||+|+.......... .. .... ..+..+++++||++|+|+++
T Consensus 155 ~~--~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~ 232 (244)
T d1yrba1 155 RL--GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFED 232 (244)
T ss_dssp HH--TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHH
T ss_pred Hh--CCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHH
Confidence 23 67999999999998642210000 00 0000 11233789999999999999
Q ss_pred HHHHhccch
Q 007334 283 LYEALRPSV 291 (607)
Q Consensus 283 L~~~i~~~l 291 (607)
|++.|.+.+
T Consensus 233 L~~~l~e~~ 241 (244)
T d1yrba1 233 LETLAYEHY 241 (244)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987653
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.30 E-value=2.6e-12 Score=127.26 Aligned_cols=90 Identities=28% Similarity=0.290 Sum_probs=65.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCe-----------------eEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDL-----------------RFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~-----------------~~~liDTpG~~~ 182 (607)
..+|+|||.||||||||||+|++.+. ...++|+ +|.+...+.+...+. .+.++|.||+..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~-~~~~ypf--~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ 78 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGI-EAANYPF--CTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CC--CCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCC-ccccCCC--CCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCC
Confidence 46899999999999999999998764 4667888 999988888775432 478999999985
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
....+.-+ ..+-+..++++|+++||+|+..
T Consensus 79 ga~~g~Gl---g~~FL~~ir~~d~LihVVr~f~ 108 (278)
T d1jala1 79 GASKGEGL---GNKFLANIRETDAIGHVVRCFE 108 (278)
T ss_dssp THHHHGGG---TCCHHHHHHTCSEEEEEEECSC
T ss_pred CcccCCCc---cHHHHHHHHhccceEEEeeccC
Confidence 54322211 1234678999999999998753
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=5.5e-12 Score=127.27 Aligned_cols=145 Identities=23% Similarity=0.290 Sum_probs=93.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCcee---------------ecCCCCceeeeEEEEEEE----------------cCeEE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVL---------------VGPEAGLTRDSVRVHFEY----------------QGRTV 374 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~---------------~~~~~gtT~~~~~~~~~~----------------~~~~~ 374 (607)
.|+|+|+.++|||||+.+|+...... .....|.|.......+.+ ++..+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 98 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 98 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence 49999999999999999997322111 111235566554444443 23468
Q ss_pred EEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh----------hHHhcCCcEEEEEeCccCCCCc---C
Q 007334 375 YLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV----------RAVEEGRGLVVIVNKMDLLSGR---Q 441 (607)
Q Consensus 375 ~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~----------~~~~~~~p~ivv~NK~Dl~~~~---~ 441 (607)
.|+||||+.++. ..+..+++-+|++|+|+|+.++ .+...++|+|+++||+|....+ .
T Consensus 99 nliDtPGh~dF~----------~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~el~~~ 168 (341)
T d1n0ua2 99 NLIDSPGHVDFS----------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVS 168 (341)
T ss_dssp EEECCCCCCSSC----------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCC
T ss_pred EEEcCCCcHHHH----------HHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccccccHHhh
Confidence 899999988773 3455777889999999999997 4566899999999999965321 2
Q ss_pred chHHHHHHHH---hcHHHHHhhC----CC----CCCCCEEEcccCCCCCH
Q 007334 442 NSALYKRVKE---AVPQEIQTVI----PQ----VTGIPVVFTSALEGRGR 480 (607)
Q Consensus 442 ~~~~~~~~~~---~~~~~~~~~~----~~----~~~~~~v~iSA~~g~gv 480 (607)
..+.++++.. .+..-+.... .. ...-.+++.||+.|.+.
T Consensus 169 ~~~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~F 218 (341)
T d1n0ua2 169 KEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAF 218 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEE
T ss_pred HHHHHHHHcCccccccceeeecccccccccccCcccCceEecccccCeEE
Confidence 2333333322 2222222211 11 11235999999999875
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1e-11 Score=124.91 Aligned_cols=153 Identities=20% Similarity=0.172 Sum_probs=86.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhc------CCceeecCCCCceeee-------EE------------EE----EEE----
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQ------EDRVLVGPEAGLTRDS-------VR------------VH----FEY---- 369 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~------~~~~~~~~~~gtT~~~-------~~------------~~----~~~---- 369 (607)
..++|+|.|.||||||||+++|.. .....+..-|.++.+. +. .. ...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~ 132 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 132 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccch
Confidence 368999999999999999999973 2223222222221110 00 00 000
Q ss_pred ------------cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhhHHh------cCCcEEEEE
Q 007334 370 ------------QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRAVE------EGRGLVVIV 431 (607)
Q Consensus 370 ------------~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~~~~------~~~p~ivv~ 431 (607)
.|..+.|+.|.|.... .......+|.+++|++...+.... ...+-++|+
T Consensus 133 ~~~~~~~~~~~~~g~d~iliEtvG~gq~-------------e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aDi~Vv 199 (327)
T d2p67a1 133 QRARELMLLCEAAGYDVVIVETVGVGQS-------------ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVI 199 (327)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTH-------------HHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEE
T ss_pred hhhhHHHHHHHhcCCCeEEEeecccccc-------------chhhhhccceEEEEecCCCchhhhhhchhhhccccEEEE
Confidence 1345667777774322 113445699999999887761111 123558999
Q ss_pred eCccCCCCcCchHHHHHHHHhcHHHHHhh--CCCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTV--IPQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 432 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
||+|+........ ..+.+...+... -...+..|++.+||++|.|+++|++.|.+..+
T Consensus 200 NKaD~~~~~~~~~----~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 200 NKDDGDNHTNVAI----ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp CCCCTTCHHHHHH----HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EeecccchHHHHH----HHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 9999875422111 111121111111 12234568999999999999999999977544
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.22 E-value=2e-12 Score=123.56 Aligned_cols=111 Identities=18% Similarity=0.203 Sum_probs=78.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
..+|+++|.+|||||||++++..... + .|.......+.+++..+.+||++|+.. +...+..
T Consensus 6 ~~KilllG~~~vGKTsll~~~~~~~~--~-------pTiG~~~~~~~~~~~~~~~~D~~Gq~~----------~r~~w~~ 66 (221)
T d1azta2 6 THRLLLLGAGESGKSTIVKQMRILHV--V-------LTSGIFETKFQVDKVNFHMFDVGGQRD----------ERRKWIQ 66 (221)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHC--C-------CCCSCEEEEEEETTEEEEEEECCCSTT----------TTTGGGG
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCc--C-------CCCCeEEEEEEECcEEEEEEecCccce----------eccchhh
Confidence 46899999999999999999965432 1 233344455677899999999999983 3344456
Q ss_pred HhhccCEEEEEEecCCCCC--------HhHHH----HHHHHHhh-CCCCcEEEEecCCCcccC
Q 007334 200 VLAKTQFAIFMIDVRSGLH--------PLDLE----VGKWLRKH-APQIKPIVAMNKCESLHN 249 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~~--------~~~~~----~~~~l~~~-~~~~p~ilV~NK~D~~~~ 249 (607)
+++.++.+++|+|.++... ..-.+ +...+... ..+.|+++++||+|+...
T Consensus 67 ~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~ 129 (221)
T d1azta2 67 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE 129 (221)
T ss_dssp GCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred hcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence 7889999999999985321 11111 12222221 347899999999998763
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.21 E-value=5.3e-12 Score=126.10 Aligned_cols=91 Identities=25% Similarity=0.259 Sum_probs=73.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCC-----------------eeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGD-----------------LRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~-----------------~~~~liDTpG~~~ 182 (607)
..+|+|||.||||||||||+||+...+.+.++|+ ||.+...+.+...+ ..+.++|.||...
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypf--tTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~ 87 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPY--ATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 87 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSS--CCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCc--cCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence 4689999999999999999999877666788998 99998888877544 3689999999986
Q ss_pred ccCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 183 EATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
....+.-+ ....+..++.||+++||+|+..
T Consensus 88 gA~~g~GL---Gn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 88 GASTGVGL---GNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCCSSSSS---CHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccc---HHHHHHHhhccceeEEEEeccC
Confidence 65543321 1344678899999999999865
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.21 E-value=2.4e-12 Score=130.13 Aligned_cols=88 Identities=26% Similarity=0.357 Sum_probs=48.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEee------------------------eCCeeEEEecC
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAK------------------------LGDLRFKVLDS 177 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~------------------------~~~~~~~liDT 177 (607)
+|+|||.||||||||||+|++.+ +.+.++|+ ||.+...+... ..+..+.++|+
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~-~~v~nypf--tT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~ 78 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPF--TTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred cEeEECCCCCCHHHHHHHHHCCC-CchhcCCC--CcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence 69999999999999999999975 46788888 88887666532 11246999999
Q ss_pred CCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCC
Q 007334 178 AGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRS 215 (607)
Q Consensus 178 pG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~ 215 (607)
||+......+. ......+..++++|++++|+|+..
T Consensus 79 pGli~ga~~g~---~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 79 AGLVPGAHEGR---GLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp C------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCcccchhccc---chHHHHHHhhccceEEEEEecccc
Confidence 99985443222 123334556789999999999975
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=5.1e-11 Score=119.77 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=86.4
Q ss_pred CCEEEEecCCCCchhHHHHHhh------ccceeeeccCCCCceee-----ee------------EEEEe-----------
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDDHVTR-----DI------------REGLA----------- 165 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~~~T~-----~~------------~~~~~----------- 165 (607)
.++|+|.|.||||||||+|+|+ |.+.+++...|....+. |. .....
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~ 133 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 133 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccchh
Confidence 5799999999999999999998 34555554444311110 00 00000
Q ss_pred ---------eeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc
Q 007334 166 ---------KLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK 236 (607)
Q Consensus 166 ---------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p 236 (607)
+..|..+.++.|.|... . -......+|.+++|++...+...+- ...-+-+. +
T Consensus 134 ~~~~~~~~~~~~g~d~iliEtvG~gq----------~---e~~i~~~aD~~l~v~~P~~Gd~iq~--~k~gi~e~----a 194 (327)
T d2p67a1 134 RARELMLLCEAAGYDVVIVETVGVGQ----------S---ETEVARMVDCFISLQIAGGGDDLQG--IKKGLMEV----A 194 (327)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEECCTT----------H---HHHHHTTCSEEEEEECC------CC--CCHHHHHH----C
T ss_pred hhhHHHHHHHhcCCCeEEEeeccccc----------c---chhhhhccceEEEEecCCCchhhhh--hchhhhcc----c
Confidence 01234577888887761 1 1235677999999998766543332 11112222 3
Q ss_pred EEEEecCCCcccCCcCcH-HHHHHHH-Hhc------CCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 237 PIVAMNKCESLHNGTGSL-AGAAAES-LML------GFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 237 ~ilV~NK~D~~~~~~~~~-~~~~~~~-~~~------~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
=++|+||+|......... ....... ..+ ..++++.+||.+|+|+++|.+.|.++..
T Consensus 195 Di~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~ 258 (327)
T d2p67a1 195 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 258 (327)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence 389999999875321100 0011111 111 1235789999999999999999987553
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=4e-10 Score=112.27 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=82.6
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeee---EEEE-------------------------------
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDI---REGL------------------------------- 164 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~---~~~~------------------------------- 164 (607)
..|.|++||..++|||||+|+|+|.+...++..+ +|+-. .++.
T Consensus 25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~---~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (299)
T d2akab1 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI---VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC---SCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc---cccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHH
Confidence 3689999999999999999999998753343333 23211 1111
Q ss_pred -----------------eee-CCeeEEEecCCCCccccCc---hhHHHHHHHHHHHHhhccC-EEEEEEecCCCCCHhHH
Q 007334 165 -----------------AKL-GDLRFKVLDSAGLETEATS---GSILDRTAGMTANVLAKTQ-FAIFMIDVRSGLHPLDL 222 (607)
Q Consensus 165 -----------------~~~-~~~~~~liDTpG~~~~~~~---~~~~~~~~~~~~~~~~~ad-~vl~VvD~s~~~~~~~~ 222 (607)
+.. .-..+.++||||+...... ..........+..|+...+ ++++|.++..+.+..+
T Consensus 102 ~~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~- 180 (299)
T d2akab1 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD- 180 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH-
T ss_pred HhhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhH-
Confidence 000 1235889999999854332 2233345677788888887 4556667766655554
Q ss_pred HHHHHHHhhCC-CCcEEEEecCCCcccCCc
Q 007334 223 EVGKWLRKHAP-QIKPIVAMNKCESLHNGT 251 (607)
Q Consensus 223 ~~~~~l~~~~~-~~p~ilV~NK~D~~~~~~ 251 (607)
...+++...+ ..++++|+||+|.....+
T Consensus 181 -~~~~~~~~~~~~~r~i~Vltk~D~~~~~~ 209 (299)
T d2akab1 181 -ALKIAKEVDPQGQRTIGVITKLDLMDEGT 209 (299)
T ss_dssp -HHHHHHHHCTTCSSEEEEEECGGGSCTTC
T ss_pred -HHHHHHHhCcCCCceeeEEeccccccchh
Confidence 3344444422 468999999999987644
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.03 E-value=4e-10 Score=112.98 Aligned_cols=154 Identities=23% Similarity=0.223 Sum_probs=89.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC------Ccee--ecCCCCce---------------eee-EEE-EE----------
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE------DRVL--VGPEAGLT---------------RDS-VRV-HF---------- 367 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~------~~~~--~~~~~gtT---------------~~~-~~~-~~---------- 367 (607)
..++|+|.|.||+|||||+++|... .... +.+....+ .+. ... ..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~ 129 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 129 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchh
Confidence 4589999999999999999999742 1111 11111000 000 000 00
Q ss_pred ----------EEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchhhH-HhcC-----CcEEEEE
Q 007334 368 ----------EYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEVRA-VEEG-----RGLVVIV 431 (607)
Q Consensus 368 ----------~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~~~-~~~~-----~p~ivv~ 431 (607)
+..|..+.|+.|.|..... ......+|.+++|+....+.. ...+ .+-++|+
T Consensus 130 ~~~~~~i~~~~~~g~d~iiiETVG~gq~e-------------~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~aDi~vv 196 (323)
T d2qm8a1 130 AKTRETMLLCEAAGFDVILVETVGVGQSE-------------TAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV 196 (323)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCH-------------HHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE
T ss_pred HHHHHHHHhhccCCCCeEEEeehhhhhhh-------------hhhhcccceEEEEeeccchhhhhhhhhhHhhhhheeeE
Confidence 0135678888898864331 123345999999999988722 1112 2449999
Q ss_pred eCccCCCCcCchHHHHHHHHhcHHHHHhhC--CCCCCCCEEEcccCCCCCHHHHHHHHHHHHH
Q 007334 432 NKMDLLSGRQNSALYKRVKEAVPQEIQTVI--PQVTGIPVVFTSALEGRGRIAVMHQVIDTYQ 492 (607)
Q Consensus 432 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~iSA~~g~gv~~l~~~i~~~~~ 492 (607)
||+|+.+.... .......+...+.... ...+..|++.+||++|.|++++++.|.+...
T Consensus 197 NKaD~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 197 NKADDGDGERR---ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp ECCSTTCCHHH---HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred eccccccchHH---HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 99998765321 1111111111111111 1224578999999999999999999977654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.03 E-value=8.2e-10 Score=110.39 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=75.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEE-----------------------------------
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGL----------------------------------- 164 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~----------------------------------- 164 (607)
.|.|++||..++|||||+|+|+|.+...++..+ +|+....-.
T Consensus 24 lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~---~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (306)
T d1jwyb_ 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGI---VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (306)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC-----------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCc---cccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHH
Confidence 589999999999999999999998753333333 222111110
Q ss_pred ------------------------eee-CCeeEEEecCCCCccccCch---hHHHHHHHHHHHHhhccCEEE-EEEecCC
Q 007334 165 ------------------------AKL-GDLRFKVLDSAGLETEATSG---SILDRTAGMTANVLAKTQFAI-FMIDVRS 215 (607)
Q Consensus 165 ------------------------~~~-~~~~~~liDTpG~~~~~~~~---~~~~~~~~~~~~~~~~ad~vl-~VvD~s~ 215 (607)
+.. .-..+.+|||||+......+ .........+..|+..++.++ +|.++..
T Consensus 101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~ 180 (306)
T d1jwyb_ 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (306)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccc
Confidence 000 12358899999998544322 223345577788999999654 4556655
Q ss_pred CCCHhHHHHHHHHHhhC-CCCcEEEEecCCCcccCCc
Q 007334 216 GLHPLDLEVGKWLRKHA-PQIKPIVAMNKCESLHNGT 251 (607)
Q Consensus 216 ~~~~~~~~~~~~l~~~~-~~~p~ilV~NK~D~~~~~~ 251 (607)
...... ...++++.. ...++++|+||+|......
T Consensus 181 ~~~~~~--~~~~~~~~~~~~~r~i~Vitk~D~~~~~~ 215 (306)
T d1jwyb_ 181 DLANSD--ALQLAKEVDPEGKRTIGVITKLDLMDKGT 215 (306)
T ss_dssp CSTTCS--HHHHHHHHCSSCSSEEEEEECTTSSCSSC
T ss_pred cccccH--HHHHHHHhCcCCCeEEEEEeccccccchh
Confidence 444333 233444432 2468999999999886544
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=1.2e-11 Score=116.66 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=103.2
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccc-cCchhHHHHHHHHHHHH
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE-ATSGSILDRTAGMTANV 200 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~-~~~~~~~~~~~~~~~~~ 200 (607)
.|+++|.||+|||||.++|...-.....+.+. .+.|....... ......-.+.++.... ................+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~--~~~D~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTRE--FNVGQYRRDMV-KTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 80 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE--EEHHHHHHHHH-CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeE--Ecccceehhhc-cccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence 58999999999999999998542211111111 23332111000 0000000111111100 00011122233334455
Q ss_pred hhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCCh
Q 007334 201 LAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGM 280 (607)
Q Consensus 201 ~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi 280 (607)
+...+..++++|+..+.......+.+.++.. +.+++++.++++... .........+......+++.++.+.
T Consensus 81 ~~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (213)
T d1bifa1 81 LSEEGGHVAVFDATNTTRERRAMIFNFGEQN--GYKTFFVESICVDPE-------VIAANIVQVKLGSPDYVNRDSDEAT 151 (213)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHH--TCEEEEEEECCCCHH-------HHHHHHHHHTTTSTTTTTSCHHHHH
T ss_pred HHhcCCCEEEeecCCccHHHHHHHHHHHHhc--CCeEEEEEeeccHHH-------HHHHhHHHHhcCCCcccccchHHHH
Confidence 5666777788999887666666666777766 678888888887322 1222334444445566777777777
Q ss_pred HHHHHHhccchHHHHhhhhccccccCCCCCCCCCCCCcccccCCceEEEEcCCCCchhHHHHHhhc
Q 007334 281 TELYEALRPSVEDYMLRVLNDSCTQNNSSTQDVTSPEDDESKLPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 281 ~eL~~~i~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.++.+.+...++.+ +... + .....+.++|.+|+||++++|.+.|
T Consensus 152 ~~~~~~l~~~~~~~-----------------e~~~-~----~~~~~~~~I~~~n~g~~~lvn~i~g 195 (213)
T d1bifa1 152 EDFMRRIECYENSY-----------------ESLD-E----EQDRDLSYIKIMDVGQSYVVNRVAD 195 (213)
T ss_dssp HHHHHHHHHHHTTC-----------------CCCC-T----TTTTTSCEEEEETTTTEEEEECCCS
T ss_pred HHHHHhhhhccccc-----------------cccC-c----cccCCcCeEecCCCCceeeeccccc
Confidence 77777665443321 0000 0 0112467889999999999998876
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.92 E-value=5.9e-10 Score=111.73 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=88.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhc------cceeeeccCCCCcee-----------------eeeEEEE------------
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR------RREALVYNTPDDHVT-----------------RDIREGL------------ 164 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~------~~~~~v~~~~~~~~T-----------------~~~~~~~------------ 164 (607)
.++|+|.|.||||||||+++|+. .+.+++...|....+ .......
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~~ 130 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAA 130 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchhH
Confidence 57899999999999999999984 233443333321110 0000010
Q ss_pred --------eeeCCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCc
Q 007334 165 --------AKLGDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIK 236 (607)
Q Consensus 165 --------~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p 236 (607)
.+..|..+.++.|+|.... + .....-+|..++|+....|...+-.. .-+- ...
T Consensus 131 ~~~~~i~~~~~~g~d~iiiETVG~gq~--------e-----~~~~~~~D~~v~v~~p~~GD~iQ~~k--~gil----E~a 191 (323)
T d2qm8a1 131 KTRETMLLCEAAGFDVILVETVGVGQS--------E-----TAVADLTDFFLVLMLPGAGDELQGIK--KGIF----ELA 191 (323)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSSC--------H-----HHHHTTSSEEEEEECSCC------CC--TTHH----HHC
T ss_pred HHHHHHHhhccCCCCeEEEeehhhhhh--------h-----hhhhcccceEEEEeeccchhhhhhhh--hhHh----hhh
Confidence 0123457888888887621 1 12345689999999887764333100 0011 123
Q ss_pred EEEEecCCCcccCCcCcHHHHH--HHHHh-------cCCCCcEEeecCCCCChHHHHHHhccchH
Q 007334 237 PIVAMNKCESLHNGTGSLAGAA--AESLM-------LGFGDPIAISAETGLGMTELYEALRPSVE 292 (607)
Q Consensus 237 ~ilV~NK~D~~~~~~~~~~~~~--~~~~~-------~~~~~~i~iSA~~g~gi~eL~~~i~~~l~ 292 (607)
=++|+||+|+............ ..... ...++++.+||.+|.|+++|.+.|.++..
T Consensus 192 Di~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~ 256 (323)
T d2qm8a1 192 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 256 (323)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred heeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 4899999998754221111110 11111 12336799999999999999999987654
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.86 E-value=4.6e-10 Score=110.34 Aligned_cols=59 Identities=32% Similarity=0.415 Sum_probs=40.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETE 183 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~ 183 (607)
..+|++||+||||||||+|+|.+.+.+.+++.|| +|++...-. .+..+.++||||+...
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG--~Tr~~~~i~---~~~~~~l~DTPGi~~p 170 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPG--ITTSQQWVK---VGKELELLDTPGILWP 170 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC--------------CCEE---ETTTEEEEECCCCCCS
T ss_pred ceEEEEEecCccchhhhhhhhhccceEEECCccc--ccccceEEE---CCCCeEEecCCCcccc
Confidence 4689999999999999999999999999999999 999876532 3567999999999743
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.73 E-value=2.1e-08 Score=99.50 Aligned_cols=115 Identities=21% Similarity=0.282 Sum_probs=70.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEE------------------------------------
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFE------------------------------------ 368 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~------------------------------------ 368 (607)
.+|+|||.-++|||||+|+|+|.....++..+ +|+-+....+.
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC-SCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc-cccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhC
Confidence 47999999999999999999997644444443 33222211111
Q ss_pred ---------------E-cCeEEEEEecCCCcccccccCcc---hhHHHHHHHHHhhccE-EEEEeccchh----------
Q 007334 369 ---------------Y-QGRTVYLVDTAGWLQREKEKGPA---SLSVMQSRKNLMRAHV-VALVLDAEEV---------- 418 (607)
Q Consensus 369 ---------------~-~~~~~~liDTpG~~~~~~~~~~~---~~~~~~~~~~i~~ad~-~llViD~~~~---------- 418 (607)
. .-..+.|+||||+.......... ......+..++..++. +++|.+++..
T Consensus 106 ~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~ 185 (299)
T d2akab1 106 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 185 (299)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHH
T ss_pred CCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHH
Confidence 1 11247799999987653222111 1222345567777765 5556666532
Q ss_pred hHH-hcCCcEEEEEeCccCCCCc
Q 007334 419 RAV-EEGRGLVVIVNKMDLLSGR 440 (607)
Q Consensus 419 ~~~-~~~~p~ivv~NK~Dl~~~~ 440 (607)
... ..+.++++|+||+|..+..
T Consensus 186 ~~~~~~~~r~i~Vltk~D~~~~~ 208 (299)
T d2akab1 186 KEVDPQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHCTTCSSEEEEEECGGGSCTT
T ss_pred HHhCcCCCceeeEEeccccccch
Confidence 111 2356899999999998763
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.72 E-value=1.7e-08 Score=100.64 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEE---------------------------------------
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRV--------------------------------------- 365 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~--------------------------------------- 365 (607)
.+|+|||..++|||||+|+|+|.....++..+ +|+-+...
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGI-VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCc-cccCCEEEEEecCCcccCccchhhhhHHhhcCCceecCHHHHHHHHH
Confidence 48999999999999999999998654443332 22211111
Q ss_pred --------------------EEEEc-CeEEEEEecCCCccccccc---CcchhHHHHHHHHHhhccEEEEEe-ccchh--
Q 007334 366 --------------------HFEYQ-GRTVYLVDTAGWLQREKEK---GPASLSVMQSRKNLMRAHVVALVL-DAEEV-- 418 (607)
Q Consensus 366 --------------------~~~~~-~~~~~liDTpG~~~~~~~~---~~~~~~~~~~~~~i~~ad~~llVi-D~~~~-- 418 (607)
.+... -..+.|+||||+....... .........+..++..++.+++++ ++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~ 183 (306)
T d1jwyb_ 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (306)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeeccccccc
Confidence 11111 2356799999987652211 112222345567888898766655 44432
Q ss_pred -----h---HH-hcCCcEEEEEeCccCCCCc
Q 007334 419 -----R---AV-EEGRGLVVIVNKMDLLSGR 440 (607)
Q Consensus 419 -----~---~~-~~~~p~ivv~NK~Dl~~~~ 440 (607)
. .. ..+..+++|+||+|..+..
T Consensus 184 ~~~~~~~~~~~~~~~~r~i~Vitk~D~~~~~ 214 (306)
T d1jwyb_ 184 NSDALQLAKEVDPEGKRTIGVITKLDLMDKG 214 (306)
T ss_dssp TCSHHHHHHHHCSSCSSEEEEEECTTSSCSS
T ss_pred ccHHHHHHHHhCcCCCeEEEEEeccccccch
Confidence 1 11 2356899999999998653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.38 E-value=8.4e-08 Score=89.90 Aligned_cols=59 Identities=24% Similarity=0.233 Sum_probs=39.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccceeee---c--cCCCCceeeeeEEEEeeeCCeeEEEecCCCCcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRREALV---Y--NTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~~~v---~--~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~ 182 (607)
.+.+++|.+|||||||+|+|.+.....+ + ...|.+||+....-.+..+ -.|+||||+..
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~ 159 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFAN 159 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTT
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccc
Confidence 4789999999999999999997643222 2 2345667777655544322 48999999973
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.22 E-value=7.1e-06 Score=75.99 Aligned_cols=102 Identities=18% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecCCCcc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNKCESL 247 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D~~ 247 (607)
.+..+.||||||............+. ..... ....+-+++|+|++.+....+ .+....... + +--++++|.|..
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el-~~~~~-~~~~~~~~LVl~a~~~~~~~~-~~~~~~~~~--~-~~~lI~TKlDet 166 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEM-KNIYE-AIKPDEVTLVIDASIGQKAYD-LASKFNQAS--K-IGTIIITKMDGT 166 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHH-HHHHH-HHCCSEEEEEEEGGGGGGHHH-HHHHHHHHC--T-TEEEEEECTTSC
T ss_pred cCCceEEEecCCcCccchhhHHHHHH-HHHHh-hcCCceEEEEEecccCcchHH-HHhhhhccc--C-cceEEEecccCC
Confidence 45689999999975322211111111 11122 234578999999987644332 223333332 2 334779999976
Q ss_pred cCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 248 HNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.. ...........+. ++.++| +|+++++
T Consensus 167 ~~----~G~~l~~~~~~~l-Pi~~it--~Gq~v~D 194 (211)
T d1j8yf2 167 AK----GGGALSAVAATGA-TIKFIG--TGEKIDE 194 (211)
T ss_dssp SC----HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred Cc----ccHHHHHHHHHCc-CEEEEe--CCCCccc
Confidence 43 4555666667777 666776 6888854
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=1.5e-05 Score=73.69 Aligned_cols=100 Identities=12% Similarity=0.151 Sum_probs=57.9
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc-----cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecC
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK-----TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 243 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~-----ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 243 (607)
+..+.||||+|...... ... +........+.. .+-+++|+|++.+..... ++....... -+-=++++|
T Consensus 91 ~~d~ilIDTaGr~~~d~--~~~-~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~---~~~~lIlTK 163 (211)
T d2qy9a2 91 NIDVLIADTAGRLQNKS--HLM-EELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS-QAKLFHEAV---GLTGITLTK 163 (211)
T ss_dssp TCSEEEECCCCCGGGHH--HHH-HHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHH-HHHHHHHHS---CCCEEEEEC
T ss_pred CCCEEEeccCCCccccH--HHH-HHHHHHHHHHhhhcccCcceeeeehhcccCcchHH-HHhhhhhcc---CCceEEEee
Confidence 45789999999763221 111 112222333332 358899999986533332 233333333 244688999
Q ss_pred CCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 244 CESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 244 ~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.|.... ...........+. ++.+++ +|+++++
T Consensus 164 lDe~~~----~G~~l~~~~~~~~-Pi~~i~--~Gq~v~D 195 (211)
T d2qy9a2 164 LDGTAK----GGVIFSVADQFGI-PIRYIG--VGERIED 195 (211)
T ss_dssp CTTCTT----TTHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred cCCCCC----ccHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence 997653 2344555666676 677777 7888754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=98.03 E-value=1.1e-05 Score=74.75 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=56.4
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhhc-----cCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecC
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLAK-----TQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 243 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~-----ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 243 (607)
+..+.||||||...... ... .........+.. .+-+++|+|+..+....+ ++....+.. -+-=++++|
T Consensus 93 ~~d~ilIDTaGr~~~d~--~~~-~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~---~~~~lI~TK 165 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHTKK--NLM-EELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLV-QAKIFKEAV---NVTGIILTK 165 (213)
T ss_dssp TCSEEEEEECCCCSCHH--HHH-HHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHH-HHHHHHHHS---CCCEEEEEC
T ss_pred CCCEEEEeccccccchH--HHH-HHHHHHHhhhhhccccccceeEEeeccccCcchhh-hhhhhcccc---CCceEEEec
Confidence 56799999999773322 111 112222233322 367899999975422221 233333332 244688999
Q ss_pred CCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 244 CESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 244 ~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.|.... ...........+. ++.+++ +|+++++
T Consensus 166 lDe~~~----~G~~l~~~~~~~~-Pi~~i~--~Gq~v~D 197 (213)
T d1vmaa2 166 LDGTAK----GGITLAIARELGI-PIKFIG--VGEKAED 197 (213)
T ss_dssp GGGCSC----TTHHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred ccCCCc----ccHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence 997543 2334445556666 667776 6887755
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=98.03 E-value=3.2e-06 Score=78.37 Aligned_cols=94 Identities=23% Similarity=0.246 Sum_probs=52.2
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh--------hHHhcCCcEEEEEeCccCCCCcC
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLLSGRQ 441 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~~~~~ 441 (607)
.+..+.||||||..... .....+..+........++-+++|+|++.. .....--+--++++|.|....-+
T Consensus 93 ~~~d~IlIDTaGr~~~~--~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TKlDet~~~G 170 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYG--EEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGG 170 (211)
T ss_dssp TTCSEEEEECCCSCCTT--CHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHCTTEEEEEECTTSCSCHH
T ss_pred cCCceEEEecCCcCccc--hhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcccCcceEEEecccCCCccc
Confidence 34578999999953221 000111111222223357889999999875 11122223456799999865421
Q ss_pred chHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 442 NSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
..+... ...+.|+.++| +|+++++
T Consensus 171 --~~l~~~-------------~~~~lPi~~it--~Gq~v~D 194 (211)
T d1j8yf2 171 --GALSAV-------------AATGATIKFIG--TGEKIDE 194 (211)
T ss_dssp --HHHHHH-------------HTTTCCEEEEE--CSSSTTC
T ss_pred --HHHHHH-------------HHHCcCEEEEe--CCCCccc
Confidence 111111 12478999888 5888755
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.92 E-value=1.1e-05 Score=74.91 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=51.3
Q ss_pred CeEEEEEecCCCcccccccCcchhHHHHHH-HHHhh-----ccEEEEEeccchh--------hHHhcCCcEEEEEeCccC
Q 007334 371 GRTVYLVDTAGWLQREKEKGPASLSVMQSR-KNLMR-----AHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDL 436 (607)
Q Consensus 371 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~-~~i~~-----ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl 436 (607)
+..+.||||||..... .+.+...... +.+.. .+-.+||+|++.. .....--+-=++++|.|.
T Consensus 93 ~~d~ilIDTaGr~~~d----~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TKlDe 168 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHTK----KNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDG 168 (213)
T ss_dssp TCSEEEEEECCCCSCH----HHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred CCCEEEEeccccccch----HHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhccccCCceEEEecccC
Confidence 5578999999954331 1111112222 22211 4779999999876 111222244678899998
Q ss_pred CCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 437 LSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
...-+ ..+.... ..+.|+.+++ +|++++++
T Consensus 169 ~~~~G--~~l~~~~-------------~~~~Pi~~i~--~Gq~v~Dl 198 (213)
T d1vmaa2 169 TAKGG--ITLAIAR-------------ELGIPIKFIG--VGEKAEDL 198 (213)
T ss_dssp CSCTT--HHHHHHH-------------HHCCCEEEEE--CSSSGGGE
T ss_pred CCccc--HHHHHHH-------------HHCCCEEEEe--CCCCcccC
Confidence 65432 1111110 1267998888 68887653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.91 E-value=3.5e-05 Score=71.02 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=56.2
Q ss_pred CeeEEEecCCCCccccCchhHHHHHHHHHHHHhh-----ccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEEEEecC
Q 007334 169 DLRFKVLDSAGLETEATSGSILDRTAGMTANVLA-----KTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPIVAMNK 243 (607)
Q Consensus 169 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~-----~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 243 (607)
+..+.||||||...... ....+. ......+. ..+-+++|+|++.+....+ ++....... + +-=++++|
T Consensus 88 ~~d~ilIDTaGr~~~d~--~l~~el-~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~--~-~~~lI~TK 160 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKH--NLMEEL-KKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE-QAKKFHEAV--G-LTGVIVTK 160 (207)
T ss_dssp TCSEEEECCCCCCTTCH--HHHHHH-HHHHHHHHHHCTTCCSEEEEEEETTBCTHHHH-HHHHHHHHH--C-CSEEEEEC
T ss_pred CCCEEEcCccccchhhH--HHHHHH-HHHHHHhhhcccCCCceEEEEeecccCchHHH-HHHHhhhcc--C-CceEEEec
Confidence 55789999999774332 111111 12222222 3467899999987653333 333444443 1 33578999
Q ss_pred CCcccCCcCcHHHHHHHHHhcCCCCcEEeecCCCCChHH
Q 007334 244 CESLHNGTGSLAGAAAESLMLGFGDPIAISAETGLGMTE 282 (607)
Q Consensus 244 ~D~~~~~~~~~~~~~~~~~~~~~~~~i~iSA~~g~gi~e 282 (607)
.|..... ..........+. ++.++| +|++.++
T Consensus 161 lDet~~~----G~~l~~~~~~~~-Pi~~i~--~Gq~p~D 192 (207)
T d1okkd2 161 LDGTAKG----GVLIPIVRTLKV-PIKFVG--VGEGPDD 192 (207)
T ss_dssp TTSSCCC----TTHHHHHHHHCC-CEEEEE--CSSSTTC
T ss_pred cCCCCCc----cHHHHHHHHHCC-CEEEEe--CCCChHh
Confidence 9976432 223444555666 666666 4666544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=7.3e-05 Score=69.85 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
++|...|.|.-|+|||||+|+++..
T Consensus 2 ~iPv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 2 PIAVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCCEEEEeeCCCCCHHHHHHHHHhc
Confidence 4689999999999999999999864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.69 E-value=8.7e-05 Score=68.31 Aligned_cols=139 Identities=15% Similarity=0.137 Sum_probs=74.7
Q ss_pred CEEEEecCCCCchhHHHHHhh------ccceeeeccCCCC---------cee-eeeEEEEe-----------------ee
Q 007334 121 PTVMIIGRPNVGKSALFNRLI------RRREALVYNTPDD---------HVT-RDIREGLA-----------------KL 167 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~------~~~~~~v~~~~~~---------~~T-~~~~~~~~-----------------~~ 167 (607)
..|+++|.+||||||.+-+|. +.+...+....+. +.. .+...... ..
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 90 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 90 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHhh
Confidence 357889999999999998886 2233222211100 000 00000000 12
Q ss_pred CCeeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHH-HHHhhCCCCcEEEEecCCCc
Q 007334 168 GDLRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGK-WLRKHAPQIKPIVAMNKCES 246 (607)
Q Consensus 168 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~-~l~~~~~~~p~ilV~NK~D~ 246 (607)
.+..+.||||+|...... ....+.. . .......+-+++|+|+..+.... .... +.+.. + .-=++++|.|.
T Consensus 91 ~~~d~vlIDTaGr~~~d~--~~~~el~-~-~~~~~~~~~~llv~~a~~~~~~~--~~~~~f~~~~--~-~~~~I~TKlDe 161 (207)
T d1ls1a2 91 EARDLILVDTAGRLQIDE--PLMGELA-R-LKEVLGPDEVLLVLDAMTGQEAL--SVARAFDEKV--G-VTGLVLTKLDG 161 (207)
T ss_dssp HTCCEEEEECCCCSSCCH--HHHHHHH-H-HHHHHCCSEEEEEEEGGGTHHHH--HHHHHHHHHT--C-CCEEEEECGGG
T ss_pred ccCcceeecccccchhhh--hhHHHHH-H-HHhhcCCceEEEEeccccchhHH--HHHHHHHhhC--C-CCeeEEeecCc
Confidence 455799999999874332 1222221 1 12344678999999998663333 3332 22222 1 23488899996
Q ss_pred ccCCcCcHHHHHHHHHhcCCCCcEEee
Q 007334 247 LHNGTGSLAGAAAESLMLGFGDPIAIS 273 (607)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~iS 273 (607)
... ...........+. ++.+++
T Consensus 162 ~~~----~G~~l~~~~~~~~-Pi~~i~ 183 (207)
T d1ls1a2 162 DAR----GGAALSARHVTGK-PIYFAG 183 (207)
T ss_dssp CSS----CHHHHHHHHHHCC-CEEEEC
T ss_pred ccc----chHHHHHHHHHCC-CEEEEe
Confidence 543 3444555566666 555554
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=1.2e-05 Score=74.21 Aligned_cols=92 Identities=22% Similarity=0.212 Sum_probs=50.9
Q ss_pred CeEEEEEecCCCcccccccCcchhHHHHHHHHHh-----hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCC
Q 007334 371 GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM-----RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLL 437 (607)
Q Consensus 371 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~-----~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~ 437 (607)
+..+.|+||||....... ..+++ ....+.+. ..+-++||+|++.. .....--+-=++++|.|..
T Consensus 91 ~~d~ilIDTaGr~~~d~~-~~~el--~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lIlTKlDe~ 167 (211)
T d2qy9a2 91 NIDVLIADTAGRLQNKSH-LMEEL--KKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGT 167 (211)
T ss_dssp TCSEEEECCCCCGGGHHH-HHHHH--HHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCEEEEECCTTC
T ss_pred CCCEEEeccCCCccccHH-HHHHH--HHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccCCceEEEeecCCC
Confidence 457899999995332100 01111 11112222 25789999999876 1112223446788999986
Q ss_pred CCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHH
Q 007334 438 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIA 482 (607)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~ 482 (607)
...+ ..+.... ..+.|+.+++ +|+++++
T Consensus 168 ~~~G--~~l~~~~-------------~~~~Pi~~i~--~Gq~v~D 195 (211)
T d2qy9a2 168 AKGG--VIFSVAD-------------QFGIPIRYIG--VGERIED 195 (211)
T ss_dssp TTTT--HHHHHHH-------------HHCCCEEEEE--CSSSGGG
T ss_pred CCcc--HHHHHHH-------------HHCCCEEEEe--CCCCccc
Confidence 5532 1111110 1267999888 7888755
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.53 E-value=8.8e-06 Score=75.14 Aligned_cols=93 Identities=28% Similarity=0.308 Sum_probs=49.7
Q ss_pred CeEEEEEecCCCcccccccCcchhHHHHHHHHHh-----hccEEEEEeccchh--------hHHhcCCcEEEEEeCccCC
Q 007334 371 GRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLM-----RAHVVALVLDAEEV--------RAVEEGRGLVVIVNKMDLL 437 (607)
Q Consensus 371 ~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~-----~ad~~llViD~~~~--------~~~~~~~p~ivv~NK~Dl~ 437 (607)
+..+.|+||||........ .+++ ....+.+. ..+-++||+|++.. .....--+-=++++|.|..
T Consensus 88 ~~d~ilIDTaGr~~~d~~l-~~el--~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~lI~TKlDet 164 (207)
T d1okkd2 88 GYDLLFVDTAGRLHTKHNL-MEEL--KKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGT 164 (207)
T ss_dssp TCSEEEECCCCCCTTCHHH-HHHH--HHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CCCEEEcCccccchhhHHH-HHHH--HHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccCCceEEEeccCCC
Confidence 5578999999954331110 0111 11112221 35788999999875 1111112335678999986
Q ss_pred CCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEEcccCCCCCHHHH
Q 007334 438 SGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVFTSALEGRGRIAV 483 (607)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iSA~~g~gv~~l 483 (607)
...+. .+.... ..+.|+.++| +|++.+++
T Consensus 165 ~~~G~--~l~~~~-------------~~~~Pi~~i~--~Gq~p~Dl 193 (207)
T d1okkd2 165 AKGGV--LIPIVR-------------TLKVPIKFVG--VGEGPDDL 193 (207)
T ss_dssp CCCTT--HHHHHH-------------HHCCCEEEEE--CSSSTTCE
T ss_pred CCccH--HHHHHH-------------HHCCCEEEEe--CCCChHhC
Confidence 55331 111110 1267988888 46665543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.50 E-value=0.00094 Score=59.04 Aligned_cols=22 Identities=36% Similarity=0.878 Sum_probs=20.6
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+|+|+|.+|+|||||++.+++.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcHHHHHHHHHHhc
Confidence 7999999999999999999974
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.00014 Score=70.19 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=44.5
Q ss_pred CCCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeee---CCeeEEEecCCCCccc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKL---GDLRFKVLDSAGLETE 183 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~---~~~~~~liDTpG~~~~ 183 (607)
++..|+|+|...+|||+|+|.|++.............+|+.+....... .+..+.++||.|+...
T Consensus 31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~ 98 (277)
T d1f5na2 31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 98 (277)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence 3568999999999999999999987642211111123566654433332 4557999999999753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.38 E-value=3e-05 Score=72.36 Aligned_cols=75 Identities=16% Similarity=0.222 Sum_probs=51.1
Q ss_pred hhccEEEEEeccchh------------hHHhcCCcEEEEEeCccCCCCcCchHHHHHHHHhcHHHHHhhCCCCCCCCEEE
Q 007334 404 MRAHVVALVLDAEEV------------RAVEEGRGLVVIVNKMDLLSGRQNSALYKRVKEAVPQEIQTVIPQVTGIPVVF 471 (607)
Q Consensus 404 ~~ad~~llViD~~~~------------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 471 (607)
.+.|.+++|+.+.++ .+...+++.+||+||+||.++.+.....+.+.+.+ .. .+.+++.
T Consensus 9 ANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y----~~-----~g~~v~~ 79 (231)
T d1t9ha2 9 CNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDY----RN-----IGYDVYL 79 (231)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH----HH-----HTCCEEE
T ss_pred cccCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHH----hh-----cccccee
Confidence 467889999888664 23457899999999999987632222222221111 11 2679999
Q ss_pred cccCCCCCHHHHHHHH
Q 007334 472 TSALEGRGRIAVMHQV 487 (607)
Q Consensus 472 iSA~~g~gv~~l~~~i 487 (607)
+||+++.|+++|.+.+
T Consensus 80 ~Sa~~~~gl~~L~~~l 95 (231)
T d1t9ha2 80 TSSKDQDSLADIIPHF 95 (231)
T ss_dssp CCHHHHTTCTTTGGGG
T ss_pred eecCChhHHHHHHHhh
Confidence 9999999998877654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.23 E-value=0.00015 Score=66.63 Aligned_cols=66 Identities=32% Similarity=0.342 Sum_probs=39.4
Q ss_pred cCeEEEEEecCCCcccccccCcchhHHHHHHHHHhhccEEEEEeccchh-------hHH-hcCCcEEEEEeCccCCCC
Q 007334 370 QGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMRAHVVALVLDAEEV-------RAV-EEGRGLVVIVNKMDLLSG 439 (607)
Q Consensus 370 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ad~~llViD~~~~-------~~~-~~~~p~ivv~NK~Dl~~~ 439 (607)
.+..+.||||||..... .+.+...........+|-+++|+|++.+ ..+ +.--.-=++++|.|....
T Consensus 91 ~~~d~vlIDTaGr~~~d----~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDe~~~ 164 (207)
T d1ls1a2 91 EARDLILVDTAGRLQID----EPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDAR 164 (207)
T ss_dssp HTCCEEEEECCCCSSCC----HHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEEEECGGGCSS
T ss_pred ccCcceeecccccchhh----hhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCCCeeEEeecCcccc
Confidence 34578999999954331 1122222223334468999999999876 111 111233477899997654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.0016 Score=60.25 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=18.6
Q ss_pred EEEEcCCCCchhHHHHHhhcC
Q 007334 327 LAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~ 347 (607)
.+|.|..|+|||||+|+++..
T Consensus 6 ~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHS
T ss_pred EEEeeCCCCCHHHHHHHHHhc
Confidence 567899999999999999864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.96 E-value=8.2e-06 Score=75.34 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
|.-|+++|.||+||||+.++|..
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999984
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00024 Score=62.45 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=22.3
Q ss_pred CCCEEEEecCCCCchhHHHHHhhc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
++|.++|+|.+|+|||||+++|..
T Consensus 1 m~Pvi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 1 MIPLLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999985
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.0011 Score=63.65 Aligned_cols=60 Identities=28% Similarity=0.298 Sum_probs=38.0
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCce-eecCCC-CceeeeEEEEEE---EcCeEEEEEecCCCccc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRV-LVGPEA-GLTRDSVRVHFE---YQGRTVYLVDTAGWLQR 385 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~-~~~~~~-gtT~~~~~~~~~---~~~~~~~liDTpG~~~~ 385 (607)
-|+|+|+..+|||+|+|.|++.... .+++.. .+|......... ..+..+.++||.|+...
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~ 98 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 98 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence 4689999999999999999986432 222211 233332211111 13457899999998765
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0061 Score=54.11 Aligned_cols=50 Identities=26% Similarity=0.444 Sum_probs=32.8
Q ss_pred EEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeeeEEEEEEEcCeEEEEEe
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDSVRVHFEYQGRTVYLVD 378 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~~~~~~~~~~~~~~liD 378 (607)
|+|+|++|+||+||+++|+.... ......+-||+.+... +.+|..|.+++
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~--E~~G~dY~Fvs 56 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD--EENGKNYYFVS 56 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-----CCBTTTBEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCc--cccCccceeee
Confidence 88999999999999999985432 2334456677765544 34555555543
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0029 Score=60.11 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=54.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCchhHHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATSGSILDRTAGMTAN 199 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 199 (607)
...++|||.||||||+++..|...-. -.+.|. ...+..+.-+|+..+.........+.+.......
T Consensus 39 k~n~lLVG~~GvGKTalv~~la~ri~--~~~vp~------------~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~ 104 (268)
T d1r6bx2 39 KNNPLLVGESGVGKTAIAEGLAWRIV--QGDVPE------------VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLK 104 (268)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH--HTCSCG------------GGTTCEEEECCCC---CCCCCSSCHHHHHHHHHH
T ss_pred cCCcEEECCCCCcHHHHHHHHHHHHH--hCCccc------------ccccceeEEeeechHhccCccchhHHHHHHHHHH
Confidence 45899999999999999999876421 112221 1234566677776665432221222233444556
Q ss_pred HhhccCEEEEEEecCCCC------CHhHHHHHHHHHhh
Q 007334 200 VLAKTQFAIFMIDVRSGL------HPLDLEVGKWLRKH 231 (607)
Q Consensus 200 ~~~~ad~vl~VvD~s~~~------~~~~~~~~~~l~~~ 231 (607)
.+...+-+|+++|--+.. ......+...|+..
T Consensus 105 ~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~ 142 (268)
T d1r6bx2 105 QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL 142 (268)
T ss_dssp HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC
T ss_pred HhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHH
Confidence 666777677777753322 12234566777654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=96.12 E-value=0.0011 Score=58.58 Aligned_cols=23 Identities=35% Similarity=0.803 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
+||+|+|++|+|||||++.+++.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 48999999999999999999874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.84 E-value=0.0017 Score=56.80 Aligned_cols=24 Identities=38% Similarity=0.772 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.|+|+|+|.|||||||+.++|...
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 588999999999999999999754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.72 E-value=0.0025 Score=55.79 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=19.7
Q ss_pred CEEEEecCCCCchhHHHHHhhc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
..++|+|++|+|||||+++|+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3678999999999999999974
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.59 E-value=0.0031 Score=55.14 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=22.8
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcC
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~ 347 (607)
+++++|+|.|.|||||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999753
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.55 E-value=0.0028 Score=55.85 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..+|+|+|.||||||||.++|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.0062 Score=54.67 Aligned_cols=49 Identities=31% Similarity=0.434 Sum_probs=33.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLET 182 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~ 182 (607)
...++|||.||||||+++..|...-.. .+.|. ...+..+.-+|+..+..
T Consensus 43 k~n~lLvG~pGVGKTalv~~LA~ri~~--~~vp~------------~L~~~~i~~ld~~~LiA 91 (195)
T d1jbka_ 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN--GEVPE------------GLKGRRVLALDMGALVA 91 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH--TCSCG------------GGTTCEEEEECHHHHHT
T ss_pred CCCeEEEecCCcccHHHHHHHHHHHHh--CCCCH------------HHcCceEEEeeHHHHhc
Confidence 457999999999999999998764211 12221 12456677788766653
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.39 E-value=0.032 Score=48.85 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
...|+++|.||+||||+..++...
T Consensus 14 p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998653
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.0038 Score=55.50 Aligned_cols=42 Identities=29% Similarity=0.541 Sum_probs=27.0
Q ss_pred CEEEEecCCCCchhHHHHHhhccce-eeeccCCCCceeeeeEEEE
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRRE-ALVYNTPDDHVTRDIREGL 164 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~~-~~v~~~~~~~~T~~~~~~~ 164 (607)
.-|+|+|++|||||||+++|+.... ......+ .|||-...+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~--~TTR~~R~~E 46 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP--HTTRPPKKDE 46 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC--EECSCC---C
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccc--cccCCCCCcc
Confidence 4599999999999999999986532 1222222 3677654443
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.0023 Score=58.39 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=27.7
Q ss_pred EEEEecCCCCchhHHHHHhhccce--eeeccCCCCceeeeeEEE
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRRE--ALVYNTPDDHVTRDIREG 163 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~--~~v~~~~~~~~T~~~~~~ 163 (607)
.|+|+|++|||||||+++|+.... ......+ +|||....+
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is--~TTR~~R~~ 45 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS--HTTRQPRPG 45 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCC--EECSCCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccCceEEEE--EeccCCCcc
Confidence 588999999999999999987532 1222233 377765443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.10 E-value=0.0024 Score=56.86 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHhhccc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRR 144 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~ 144 (607)
.|+|+|.+|||||||++.|....
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999998653
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.012 Score=55.74 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=43.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccccccCcchhHHHHHHHHHhh
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQREKEKGPASLSVMQSRKNLMR 405 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~i~~ 405 (607)
.+++||+||||||+++..|... ..-...|.. ..+..+.-+|+..+.......+..+-........+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~r--i~~~~vp~~----------l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~ 108 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWR--IVQGDVPEV----------MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ 108 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--HHHTCSCGG----------GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS
T ss_pred CcEEECCCCCcHHHHHHHHHHH--HHhCCcccc----------cccceeEEeeechHhccCccchhHHHHHHHHHHHhhc
Confidence 6899999999999999998742 111222211 1344566677766655422222222222334455556
Q ss_pred ccEEEEEecc
Q 007334 406 AHVVALVLDA 415 (607)
Q Consensus 406 ad~~llViD~ 415 (607)
.+-+|+++|-
T Consensus 109 ~~~iIlfiDe 118 (268)
T d1r6bx2 109 DTNSILFIDE 118 (268)
T ss_dssp SSCEEEEETT
T ss_pred cCCceEEecc
Confidence 6667777774
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.07 E-value=0.0041 Score=54.65 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~ 347 (607)
.-+|+|.|.||||||||+++|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999854
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.03 E-value=0.0042 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
|+|+|+|.|||||||+.+.|...
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.01 E-value=0.0055 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|.|+|.||||||||.++|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999754
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0048 Score=53.56 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchhHHHHHhhc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~ 346 (607)
-++|+|.+|+|||||++.|+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 389999999999999999984
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0056 Score=57.11 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.|+|||.+|+|||||++.|+|-
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999885
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.89 E-value=0.0055 Score=53.23 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~ 346 (607)
++|+|+|.|||||||+.+.|..
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=94.70 E-value=0.007 Score=56.52 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.|+|+|.+|+|||||++.|+|-
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999874
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.68 E-value=0.006 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+|.|.|||||||+.++|...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.67 E-value=0.0053 Score=54.51 Aligned_cols=37 Identities=27% Similarity=0.274 Sum_probs=25.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeee
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDS 362 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~ 362 (607)
-|+|+|++|||||||++.|...........+-|||.+
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~ 40 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAP 40 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCC
Confidence 3789999999999999999865322222344456543
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.60 E-value=0.022 Score=52.20 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=42.7
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhHHHHHHHHHhhCCCCcEE-EEecCCCccc
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLDLEVGKWLRKHAPQIKPI-VAMNKCESLH 248 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~~~~~~~l~~~~~~~p~i-lV~NK~D~~~ 248 (607)
..+.++|||+... ..+...+..||.+++|+.........-.++.+++++. +.|++ +|+|+.|...
T Consensus 112 ~d~IiiD~~~~~~------------~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~--~~~~~giv~N~~~~~~ 177 (237)
T d1g3qa_ 112 FDFILIDCPAGLQ------------LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRSD 177 (237)
T ss_dssp CSEEEEECCSSSS------------HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred CCEEEEccccccc------------ccchhhhhhhhcccccccccceecchhhHHHHHHhhh--hhhhhhhhhccccccc
Confidence 4689999998651 1234567789999999986532111123355566654 67766 8999998654
Q ss_pred C
Q 007334 249 N 249 (607)
Q Consensus 249 ~ 249 (607)
.
T Consensus 178 ~ 178 (237)
T d1g3qa_ 178 R 178 (237)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=94.58 E-value=0.0072 Score=56.83 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|||.+|+|||||++.|+|-
T Consensus 42 e~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCChHHHHHHHHhcc
Confidence 47999999999999999999874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.0078 Score=56.51 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|||.+|+|||||++.|+|-
T Consensus 41 e~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 41 EVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcc
Confidence 47999999999999999999885
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.52 E-value=0.0082 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.|++|+|.|+||+||||+...|..
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999998864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.51 E-value=0.0083 Score=55.41 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|.+|+|||||++.+.|-
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCcchhhHhccCC
Confidence 37999999999999999999874
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.42 E-value=0.0085 Score=54.21 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|..|+|||||++.++|-
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcc
Confidence 36999999999999999999985
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.40 E-value=0.02 Score=57.08 Aligned_cols=80 Identities=26% Similarity=0.347 Sum_probs=39.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhccceeeeccCCCCceeeeeEEEEeeeCCeeEEEecCCCCccccCc-hhHHHHHHHHHH
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLGDLRFKVLDSAGLETEATS-GSILDRTAGMTA 198 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~~~~~v~~~~~~~~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~ 198 (607)
..+++|||.||||||+|+..|...-. -++.|. ...+..+.-+|...+...... +.+..+. ....
T Consensus 43 k~n~llvG~~GvGKtaiv~~la~~i~--~~~vp~------------~l~~~~i~~ld~~~l~ag~~~~g~~e~r~-~~i~ 107 (387)
T d1qvra2 43 KNNPVLIGEPGVGKTAIVEGLAQRIV--KGDVPE------------GLKGKRIVSLQMGSLLAGAKYRGEFEERL-KAVI 107 (387)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHH--HTCSCT------------TSTTCEEEEECC-----------CHHHHH-HHHH
T ss_pred CCCCeEECCCCCCHHHHHHHHHHHHH--hCCCCH------------HHcCceEEEeeHhhhhcccCcchhHHHHH-HHHH
Confidence 45689999999999999988765311 112221 124566777787766633221 2222222 2333
Q ss_pred HHhhccC-EEEEEEecC
Q 007334 199 NVLAKTQ-FAIFMIDVR 214 (607)
Q Consensus 199 ~~~~~ad-~vl~VvD~s 214 (607)
..+..+. -+|+++|--
T Consensus 108 ~~~~~~~~~~ilfide~ 124 (387)
T d1qvra2 108 QEVVQSQGEVILFIDEL 124 (387)
T ss_dssp HHHHTTCSSEEEEECCC
T ss_pred HHhccCCCceEEEeccH
Confidence 4444443 355555543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.0094 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|.+|+|||||++.+.|-
T Consensus 27 ei~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 37999999999999999999875
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.32 E-value=0.011 Score=52.77 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCchhHHHHHhhc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
++++|+++|+||+||||+...|..
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999998873
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.29 E-value=0.011 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+|..|+|+|+||+||||+...|..
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999874
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.25 E-value=0.0094 Score=51.84 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhHHHHHhhc
Q 007334 327 LAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~ 346 (607)
++|+|.+|+|||||+++|+.
T Consensus 4 i~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 47999999999999999974
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.21 E-value=0.0095 Score=56.90 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.|+|+|.+|+|||||++.|+|-
T Consensus 63 e~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 47999999999999999999984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.14 E-value=0.014 Score=50.72 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..+|+|.|.|||||||+.+.|...
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999754
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.11 E-value=0.011 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+.|+|+|.||+||||+..+|...
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.11 E-value=0.009 Score=54.29 Aligned_cols=91 Identities=20% Similarity=0.181 Sum_probs=49.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCc--eeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcccc-cc--------cCc-ch
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDR--VLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQRE-KE--------KGP-AS 393 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~--~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~~~-~~--------~~~-~~ 393 (607)
-|+|+|++|||||||+++|+.... ......+.|||.+..+ +.+|..|.+++-.-+.... .. .+. .-
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~--E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YG 81 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG--EVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYG 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT--CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCcc--ccccccceeecHHHHHHHhhhhhheeEEEECCceec
Confidence 478999999999999999986532 2333455677654432 2344445554443321110 00 000 00
Q ss_pred hHHHHHHHHHhhccEEEEEeccchh
Q 007334 394 LSVMQSRKNLMRAHVVALVLDAEEV 418 (607)
Q Consensus 394 ~~~~~~~~~i~~ad~~llViD~~~~ 418 (607)
.+.......+.....+|+-+|....
T Consensus 82 t~~~~v~~~~~~g~~~ildid~~g~ 106 (205)
T d1s96a_ 82 TSREAIEQVLATGVDVFLDIDWQGA 106 (205)
T ss_dssp EEHHHHHHHHTTTCEEEEECCHHHH
T ss_pred cccchHHHHHhcCCceeecCcHHHH
Confidence 1122334455566777777776554
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.10 E-value=0.012 Score=54.67 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|.+|+|||||++.+.|-
T Consensus 33 e~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 36999999999999999999885
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.06 E-value=0.0092 Score=56.08 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.|+|+|.+|+|||||++.|+|-
T Consensus 45 e~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 47999999999999999999874
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.04 E-value=0.021 Score=50.55 Aligned_cols=24 Identities=46% Similarity=0.441 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCCchhHHHHHhhc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.++-|+|.|.+|+|||||.++|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 357799999999999999999873
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.03 E-value=0.014 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++++|+.|+|||||++.++|-
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl 50 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTY 50 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcc
Confidence 5899999999999999999975
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.0054 Score=54.78 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEecCCCCchhHHHHHhhcc
Q 007334 123 VMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~ 143 (607)
|+|+|.+|||||||+++|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999865
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.01 E-value=0.011 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.5
Q ss_pred EEEEcCCCCchhHHHHHhhcC
Q 007334 327 LAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~ 347 (607)
|+++|.||+||||++++|...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 678999999999999998743
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=93.95 E-value=0.013 Score=54.49 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.7
Q ss_pred CEEEEecCCCCchhHHHHHhhccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRR 144 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~ 144 (607)
-.++|+|..|+|||||++.|+|--
T Consensus 29 ei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 29 EIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999863
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.014 Score=52.28 Aligned_cols=26 Identities=19% Similarity=0.624 Sum_probs=23.0
Q ss_pred cCCCEEEEecCCCCchhHHHHHhhcc
Q 007334 118 NLLPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 118 ~~~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+..+.|+|+|.||+||||+...|...
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44789999999999999999999764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=93.92 E-value=0.013 Score=54.57 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|..|+|||||++.|+|-
T Consensus 33 ei~~liGpnGaGKSTl~~~i~Gl 55 (240)
T d1ji0a_ 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=93.86 E-value=0.011 Score=54.59 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.8
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.++|+|.+|+|||||++.|.|-
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6999999999999999999985
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.84 E-value=0.013 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~ 346 (607)
++|+|+|.||+||||+...|..
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.011 Score=54.81 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|..|+|||||++.|+|-
T Consensus 26 ei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 26 EILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp CEEECBCCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999884
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=93.83 E-value=0.014 Score=54.22 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=21.5
Q ss_pred CEEEEecCCCCchhHHHHHhhccc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRRR 144 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~~ 144 (607)
-.++|+|.+|+|||||++.|.|-.
T Consensus 30 e~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 379999999999999999998853
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.76 E-value=0.015 Score=53.90 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.5
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.++|+|..|+|||||++.|.|-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6889999999999999999985
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.71 E-value=0.016 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.7
Q ss_pred CEEEEecCCCCchhHHHHHhhc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
..|+|.|.|||||||+.+.|..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999964
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.014 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=21.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|.+|+|||||++.|.|-
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 36999999999999999999885
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.014 Score=50.90 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHhhc
Q 007334 122 TVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~ 142 (607)
.|.|.|.||+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 599999999999999999874
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.67 E-value=0.014 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.|.|+|.+||||||+...|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.63 E-value=0.014 Score=50.61 Aligned_cols=22 Identities=32% Similarity=0.458 Sum_probs=19.6
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+|+|+|.|||||||+...|...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.57 E-value=0.082 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|.|.|.||+|||+|.+++.+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 46999999999999999999753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.56 E-value=0.015 Score=50.14 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhHHHHHhhcC
Q 007334 327 LAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~ 347 (607)
|+|.|.|||||||+.++|...
T Consensus 5 I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.016 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
=+|+|+|++|+|||||++.|.|-
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~gl 52 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQRF 52 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999975
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.52 E-value=0.016 Score=50.86 Aligned_cols=22 Identities=18% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+|+|+|.||+||||+...|...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998653
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.52 E-value=0.019 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.++|+|+|.||+||||+...|...
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=93.45 E-value=0.017 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|.+|+|||||++.|.|-
T Consensus 29 Ei~~iiG~sGsGKSTLl~~i~Gl 51 (258)
T d1b0ua_ 29 DVISIIGSSGSGKSTFLRCINFL 51 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHcC
Confidence 37999999999999999999875
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.42 E-value=0.018 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~ 346 (607)
++|+|+|.||+||||+...|..
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.42 E-value=0.015 Score=51.96 Aligned_cols=47 Identities=26% Similarity=0.513 Sum_probs=30.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEEEEecCCCcc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVYLVDTAGWLQ 384 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~liDTpG~~~ 384 (607)
.+++||+||||||+++..|... ......|.. ..+..+.-+|+..+..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~r--i~~~~vp~~----------L~~~~i~~ld~~~LiA 91 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQR--IINGEVPEG----------LKGRRVLALDMGALVA 91 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH--HHHTCSCGG----------GTTCEEEEECHHHHHT
T ss_pred CeEEEecCCcccHHHHHHHHHH--HHhCCCCHH----------HcCceEEEeeHHHHhc
Confidence 5899999999999999988742 111222221 2345677788766543
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.37 E-value=0.021 Score=50.94 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCchhHHHHHhhcC
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~~ 347 (607)
+.++|+|+|+||+||||+...|...
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999999999999843
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.36 E-value=0.018 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.3
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|..|+|||||++.|+|-
T Consensus 31 ei~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 31 DVTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHCC
Confidence 36999999999999999999985
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.35 E-value=0.019 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|.|+|.|||||||+.++|...
T Consensus 7 ~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 7 FTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999988753
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.33 E-value=0.2 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..-+.+.|+||+|||++.+++...
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 346999999999999999999753
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=93.23 E-value=0.019 Score=53.49 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
=.++|+|++|+|||||++.|.|-
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.21 E-value=0.019 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
=.++|||++|+|||||++.|+|-
T Consensus 42 e~iaivG~sGsGKSTLl~ll~gl 64 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLITRF 64 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCChHHHHHHHHhcc
Confidence 37999999999999999999875
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.20 E-value=0.015 Score=51.77 Aligned_cols=21 Identities=48% Similarity=0.710 Sum_probs=19.4
Q ss_pred EEEEcCCCCchhHHHHHhhcC
Q 007334 327 LAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~ 347 (607)
|+|+|++||||+||+++|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999865
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.031 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
-++++|++|+|||||++.+.|-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl 54 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLL 54 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999875
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.17 E-value=0.018 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.++|+|+|.||+||||+...|...
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.16 E-value=0.0084 Score=53.70 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=19.4
Q ss_pred EEEecCCCCchhHHHHHhhcc
Q 007334 123 VMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 123 V~ivG~~nvGKSSL~n~L~~~ 143 (607)
|+|+|++|||||||+++|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.12 E-value=0.022 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
+...|+|.|.+|+|||||.++|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999974
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.09 E-value=0.021 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCchhHHHHHhhc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~ 346 (607)
++|+|+|.||+||||+...|..
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.05 E-value=0.021 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.694 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+|+|+|.||+||||+...|...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.022 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=20.5
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
|+.|+|+|+||+||||....|..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=93.03 E-value=0.026 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|.|.|.||+||||+.++|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46888899999999999999764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.022 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~ 346 (607)
++|+++|.||+||||....|..
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.00 E-value=0.014 Score=54.22 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=21.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.++|+|.+|+|||||++.|.|-
T Consensus 32 e~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 32 ERFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHHcC
Confidence 37999999999999999999885
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.021 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
=.++|||+.|+|||||++.|+|-
T Consensus 41 e~vaivG~sGsGKSTLl~li~gl 63 (251)
T d1jj7a_ 41 EVTALVGPNGSGKSTVAALLQNL 63 (251)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcc
Confidence 37999999999999999999975
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.91 E-value=0.022 Score=49.35 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.2
Q ss_pred ceEEEEcCCCCchhHHHHHhhc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~ 346 (607)
.+|+++|.|||||||+...|..
T Consensus 2 p~IvliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988863
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.91 E-value=0.026 Score=48.90 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.++-|.++|.|||||||+..+|..
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~ 28 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQV 28 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357788999999999999988863
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.87 E-value=0.022 Score=52.45 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++++|++|||||||++.+.|-
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl 54 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCL 54 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCcchhhHhccCC
Confidence 5899999999999999998875
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=92.86 E-value=0.041 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++++|+.|+|||||++.+.|-
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl 52 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGL 52 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999975
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.84 E-value=0.024 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.|+|.|.||+||||+.+.|...
T Consensus 6 iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999754
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.82 E-value=0.024 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+|+|+|.||+||||+...|...
T Consensus 4 ~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 4 VRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999753
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.81 E-value=0.024 Score=49.37 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=19.2
Q ss_pred CEEEEecCCCCchhHHHHHhhc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
..|.|+|.|||||||+.+.|..
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999864
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.80 E-value=0.029 Score=49.17 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCchhHHHHHhhc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.|.-|+++|.||+||||++.++..
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 355688999999999999999874
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.79 E-value=0.027 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.++|+++|.||+||||+...|..
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.77 E-value=0.023 Score=54.03 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=20.7
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++|+|+.|+|||||++.|+|-
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6999999999999999999975
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.70 E-value=0.024 Score=49.30 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHhhc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~ 346 (607)
.|.|.|+||+|||||+..+..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~ 23 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999874
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.024 Score=52.22 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
-++++|+.|||||||++.+.|-
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.65 E-value=0.026 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+|+|+|.||+||||+.+.|...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=92.60 E-value=0.025 Score=48.07 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.|.++|.|||||||+...|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988743
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.029 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
...++|+|.||+||||+.++|...
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356888999999999999999753
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.37 E-value=0.027 Score=49.08 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhHHHHHhh
Q 007334 327 LAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~ 345 (607)
|+|.|.|||||||+++.|.
T Consensus 4 I~i~G~~GsGKsT~~~~L~ 22 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAM 22 (190)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7889999999999999885
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.35 E-value=0.028 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=18.6
Q ss_pred EEEEecCCCCchhHHHHHhhc
Q 007334 122 TVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~ 142 (607)
.|+|.|.+||||||+.+.|..
T Consensus 3 iivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999964
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.028 Score=49.90 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+.|+|+|.||+||||....|...
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.32 E-value=0.049 Score=54.14 Aligned_cols=21 Identities=33% Similarity=0.733 Sum_probs=18.2
Q ss_pred eEEEEcCCCCchhHHHHHhhc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~ 346 (607)
.+++||.||||||+++..|..
T Consensus 45 n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 45 NPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred CCeEECCCCCCHHHHHHHHHH
Confidence 478999999999999987763
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=92.30 E-value=0.024 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
=+++|+|++|+|||||++.|.|-
T Consensus 45 e~vaivG~sGsGKSTLl~ll~gl 67 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPRF 67 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 37999999999999999999875
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.30 E-value=0.029 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++++|+.|+|||||++.+.|-
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl 55 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGL 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5899999999999999999975
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.029 Score=49.18 Aligned_cols=22 Identities=18% Similarity=0.535 Sum_probs=19.9
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
+|+|+|.||+||||+...|...
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.11 E-value=0.035 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
|+-|+|.|.+|+||||+.+.|..
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999998863
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=92.08 E-value=0.031 Score=51.75 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
-++++|+.|+|||||++.|.|-
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~ 51 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTL 51 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999986
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.021 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.9
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|.|+|.|||||||+.+.|...
T Consensus 20 ~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 20 CTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999653
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=92.05 E-value=0.032 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
-++++|+.|+|||||++.+.|-
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl 55 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999986
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.46 Score=43.21 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+.+.|.|.||+||||++..+...
T Consensus 33 ~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 33 LPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998753
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.92 E-value=0.034 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.1
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
-++++|+.|+|||||++.+.|-
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl 47 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999999985
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.90 E-value=0.036 Score=47.89 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=18.5
Q ss_pred EEEEcCCCCchhHHHHHhhcC
Q 007334 327 LAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~ 347 (607)
|++.|.||+||||+.+.|...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999988743
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.86 E-value=0.21 Score=45.10 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=36.3
Q ss_pred eeEEEecCCCCccccCchhHHHHHHHHHHHHhhccCEEEEEEecCCCCCHhH-HHHHHHHHhhCCCCcE-EEEecCCCcc
Q 007334 170 LRFKVLDSAGLETEATSGSILDRTAGMTANVLAKTQFAIFMIDVRSGLHPLD-LEVGKWLRKHAPQIKP-IVAMNKCESL 247 (607)
Q Consensus 170 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ad~vl~VvD~s~~~~~~~-~~~~~~l~~~~~~~p~-ilV~NK~D~~ 247 (607)
..+.++|||+.... .+...+..+|.+++|.+.... ...+ ......+++. +.+. -+|+|+.+..
T Consensus 110 ~D~viiD~~~~~~~------------~~~~~l~~ad~v~~v~~~~~~-~~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~ 174 (232)
T d1hyqa_ 110 TDILLLDAPAGLER------------SAVIAIAAAQELLLVVNPEIS-SITDGLKTKIVAERL--GTKVLGVVVNRITTL 174 (232)
T ss_dssp CSEEEEECCSSSSH------------HHHHHHHHSSEEEEEECSSHH-HHHHHHHHHHHHHHH--TCEEEEEEEEEECTT
T ss_pred cceeeecccccccc------------hhHHHhhhhheeeeecccccc-chhhhhhhhhhhhhc--ccccccccccccccc
Confidence 35788999886621 122345679999999876421 1111 2233445554 3444 4789998743
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.82 E-value=0.066 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..-|.|.|.||+|||+|.+++.+.
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcchhHHHHHHHH
Confidence 356999999999999999999764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=91.74 E-value=0.026 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
-++++|+.|+|||||++.+.|-
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl 49 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGF 49 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999985
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=91.73 E-value=0.027 Score=51.97 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
-++++|+.|+|||||++.+.|-
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999974
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.71 E-value=0.04 Score=48.36 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.4
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+|+|+|.||+||||+...|...
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999754
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.71 E-value=0.037 Score=49.24 Aligned_cols=24 Identities=17% Similarity=0.588 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+.|.|+|.||+||||+..+|...
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.63 E-value=0.041 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.++++|+.|+|||||++.+.|-
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl 54 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGL 54 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999975
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.62 E-value=0.19 Score=46.70 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~ 347 (607)
+.-+.+.|+||+|||++++++...
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHHHHHHH
Confidence 345889999999999999999854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=91.60 E-value=0.038 Score=47.62 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhHHHHHhhc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~ 346 (607)
+|+++|.|||||||+...|..
T Consensus 2 ~I~liG~~GsGKsTi~k~La~ 22 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAK 22 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.58 E-value=0.045 Score=50.28 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..+.+.+.|+||+||||+.+.+.+.
T Consensus 34 ~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 34 PLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999764
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.026 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCchhHHHHHhhc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
++..|.++|.||+||||+.+.|..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999999863
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.20 E-value=0.045 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhHHHHHhhcC
Q 007334 327 LAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~ 347 (607)
|+|.|.||+||||+.+.|...
T Consensus 6 I~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567799999999999999754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.046 Score=47.00 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=18.5
Q ss_pred eEEEEcCCCCchhHHHHHhhc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~ 346 (607)
-++++|.||+||||+...|..
T Consensus 8 iivl~G~~GsGKsT~a~~La~ 28 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAH 28 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999874
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.18 E-value=0.044 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.5
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
-++++|+.|+|||||++.++|-
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl 53 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGF 53 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHHCC
Confidence 4899999999999999999986
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.13 E-value=0.044 Score=53.16 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.8
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+|+|.+|+|||||+|+|++.
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEeeccccchHHHHHHhhh
Confidence 46999999999999999999864
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.09 E-value=0.049 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.4
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.|.|+|.|+||+||||+...|...
T Consensus 3 ~piI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 3 APVITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999753
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=91.05 E-value=0.046 Score=51.19 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=28.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcCCceeecCCCCceeeeEEEEEEEcCeEEE
Q 007334 326 QLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSVRVHFEYQGRTVY 375 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~~ 375 (607)
.++|+|+.|+|||||++.+.|-.. + ..+.+.++|..+.
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~~----p--------~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLEK----P--------SEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC----C--------SEEEEEETTEECC
T ss_pred EEEEECCCCCcHHHHHHHHHcCcc----C--------CCCCEEECCEEec
Confidence 589999999999999999997521 1 1355666776543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.68 E-value=0.46 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.-|.+.|.||+|||+|.+++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEecCCCCCchHHHHHHHHH
Confidence 46999999999999999999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.44 E-value=0.087 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
..+.+.|+||+||||+++.+.+.
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.39 E-value=0.067 Score=47.19 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCchhHHHHHhh
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~ 345 (607)
.|+-|+|.|.+|+||||+.+.|.
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 36789999999999999999875
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=90.33 E-value=0.06 Score=46.68 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.3
Q ss_pred eEEEEcCCCCchhHHHHHhhc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~ 346 (607)
.|+++|.|||||||+.+.|..
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378899999999999998863
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.28 E-value=0.068 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCchhHHHHHhhcC
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~~ 347 (607)
|.-|.+.|+||+|||||+.+|.+.
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 445889999999999999999864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.27 E-value=0.059 Score=46.99 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=17.6
Q ss_pred eE-EEEcCCCCchhHHHHHhhc
Q 007334 326 QL-AIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v-~ivG~~nvGKSslin~l~~ 346 (607)
|| +|.|.|||||||+++.|..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 45 5679999999999998863
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.26 E-value=0.057 Score=50.27 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-|.|.|.||+|||||..+|.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.07 E-value=0.065 Score=47.52 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=24.7
Q ss_pred EEEEcCCCCchhHHHHHhhcCCc-eeecCCCCceeee
Q 007334 327 LAIVGRPNVGKSTLLNALLQEDR-VLVGPEAGLTRDS 362 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~~~-~~~~~~~gtT~~~ 362 (607)
|+|+|++|||||||+++|..... ......+-|||..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~ 39 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNP 39 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCC
Confidence 78999999999999999975321 1223444555543
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.05 E-value=0.076 Score=46.97 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.6
Q ss_pred cCCceEEEEcCCCCchhHHHHHhhcC
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~~~ 347 (607)
.+|+-|+|-|..||||||+++.|...
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999998753
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.04 E-value=0.12 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.+.+.|+||+||||+++.+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhc
Confidence 5889999999999999988743
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.84 E-value=0.07 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.|+|+|+||+||||+...|...
T Consensus 10 iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.79 E-value=0.074 Score=47.81 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.9
Q ss_pred CEEEEecCCCCchhHHHHHhhc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
..|+|.|.+|+|||||.+.|..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.41 E-value=0.091 Score=46.48 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
.-|.|+|+||+||||+...|...
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999753
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=89.40 E-value=0.086 Score=48.19 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+.+.|.|+||+||||+.+.|...
T Consensus 35 ~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 35 LDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHhc
Confidence 567999999999999999998753
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.17 E-value=0.096 Score=47.20 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.+.|+|-|+|||||||....|..
T Consensus 3 ~i~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 3 TIQIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.02 E-value=0.14 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
+-.+.|.|+||+|||++++.+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~ 65 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWE 65 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998874
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.00 E-value=0.11 Score=47.90 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
....+.|.|.||+|||++++.+...
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.75 E-value=0.14 Score=46.96 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+.+.|.|+||+||||++.++.+.
T Consensus 52 ~~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 52 FRAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999865
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.71 E-value=0.12 Score=47.02 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCchhHHHHHhhcc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..+.+.|.|.||+||||++..+...
T Consensus 44 ~~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 44 SMPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3577999999999999999998764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.38 E-value=0.12 Score=45.61 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+|-|..||||||+++.|...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999753
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.29 E-value=0.14 Score=44.73 Aligned_cols=28 Identities=36% Similarity=0.498 Sum_probs=22.9
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeec
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVY 149 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~ 149 (607)
-|+|.|.+|+|||||.-.|.......++
T Consensus 16 gvl~~G~sG~GKStlal~l~~~g~~lv~ 43 (176)
T d1kkma_ 16 GVLITGDSGVGKSETALELVQRGHRLIA 43 (176)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHcCCeEEe
Confidence 5899999999999999998876544443
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.27 E-value=0.26 Score=45.04 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
..+.+.|+||+||||++.++...
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999865
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.09 E-value=0.12 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=19.4
Q ss_pred CCEEEEecCCCCchhHHHHHhh
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI 141 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~ 141 (607)
...|+|.|.+||||||+.+.|.
T Consensus 3 p~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999884
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=87.96 E-value=0.13 Score=49.13 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.2
Q ss_pred cCCceEEEEcCCCCchhHHHHHhh
Q 007334 322 KLPLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 322 ~~~~~v~ivG~~nvGKSslin~l~ 345 (607)
+.|+-|+|.|.++|||||+.+.|.
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~ 101 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHH
Confidence 457889999999999999988875
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=87.67 E-value=0.14 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.6
Q ss_pred CCEEEEecCCCCchhHHHHHhhc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
...|-|.|.||+|||||.+.|..
T Consensus 24 g~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 24 GLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999974
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.58 E-value=0.13 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.2
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+|.|.+|+|||||+++++..
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Confidence 57899999999999999998753
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=87.39 E-value=0.18 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.1
Q ss_pred CCEEEEecCCCCchhHHHHHhhc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
.+.|+|.|.+|+||||..+.|..
T Consensus 3 k~iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 3 RYIVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 45899999999999999998753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=87.38 E-value=0.13 Score=49.76 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.|+|+|.+|+||||++|+|++.
T Consensus 168 nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEeeccccchHHHHHHhhh
Confidence 5899999999999999999964
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=87.35 E-value=0.16 Score=44.37 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=23.3
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeecc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYN 150 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~ 150 (607)
=|+|.|.+|+|||||.-.|.......++|
T Consensus 17 gvli~G~sG~GKS~lal~l~~~G~~lvaD 45 (177)
T d1knxa2 17 GVLLTGRSGIGKSECALDLINKNHLFVGD 45 (177)
T ss_dssp EEEEEESSSSSHHHHHHHHHTTTCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCCceecC
Confidence 48999999999999999998765444443
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.13 E-value=0.18 Score=43.59 Aligned_cols=29 Identities=38% Similarity=0.531 Sum_probs=23.6
Q ss_pred EEEEecCCCCchhHHHHHhhccceeeecc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRRREALVYN 150 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~~~~~v~~ 150 (607)
=|+|.|.+|+|||||.-.|.......++|
T Consensus 17 gvli~G~sg~GKS~la~~l~~~g~~li~D 45 (169)
T d1ko7a2 17 GVLITGDSGIGKSETALELIKRGHRLVAD 45 (169)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTTCEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHcCCeEEeC
Confidence 59999999999999999988765544444
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=86.74 E-value=0.24 Score=45.78 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
.-|.+.|+||+|||++++++.+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 35899999999999999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.69 E-value=0.14 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+++|+||||||.|.++|.+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 46899999999999999999763
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.64 E-value=0.17 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+|+|-|.|||||||+...|...
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.49 E-value=0.13 Score=48.68 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=17.7
Q ss_pred CCEEEEecCCCCchhHHHHHhhc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
-|.|+|.|.+||||||+.++|..
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 47899999999999999998854
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.39 E-value=0.17 Score=45.84 Aligned_cols=24 Identities=29% Similarity=0.621 Sum_probs=21.2
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+.+.|.|.||+||||++..++..
T Consensus 33 ~~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 33 LPHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChHHHHHHHHHH
Confidence 567999999999999999999864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=86.37 E-value=0.18 Score=45.23 Aligned_cols=24 Identities=33% Similarity=0.324 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCchhHHHHHhhc
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~~ 346 (607)
++.-|-+.|.||+|||||.+.|..
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999863
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=85.96 E-value=0.18 Score=44.95 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.5
Q ss_pred CCEEEEecCCCCchhHHHHHhh
Q 007334 120 LPTVMIIGRPNVGKSALFNRLI 141 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~ 141 (607)
...|+|.|.+|+||||+.+.|-
T Consensus 2 ~~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 2 TYIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp CEEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999998774
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=85.85 E-value=0.18 Score=48.19 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCCchhHHHHHhhc
Q 007334 119 LLPTVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 119 ~~~~V~ivG~~nvGKSSL~n~L~~ 142 (607)
..+.|+|.|.++|||||+.+.|..
T Consensus 79 ~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHH
Confidence 356899999999999999988853
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.78 E-value=0.11 Score=48.40 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=18.4
Q ss_pred EEEEecCCCCchhHHHHHhhcc
Q 007334 122 TVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+.|.|.||+|||++++++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 3456799999999999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.77 E-value=0.16 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
--+.++|+||||||.|.+++...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 45889999999999999999753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.49 E-value=0.2 Score=45.27 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.+.+.|.|.||+||||+.+.|...
T Consensus 36 ~~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 36 MPHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCchhhHHHHHHH
Confidence 567999999999999999988753
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.38 E-value=0.18 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
..|.+.|+||+|||++++++.+.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 46899999999999999999754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.19 E-value=0.21 Score=44.97 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.3
Q ss_pred CCEEEEecCCCCchhHHHHHhhcc
Q 007334 120 LPTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 120 ~~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.|.+.|.|.||+||||++..+...
T Consensus 35 ~~~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 35 LPHLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHH
Confidence 567899999999999999999864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.08 E-value=0.19 Score=46.34 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhHHHHHhhc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~ 346 (607)
-|+|.|++|+|||||+.+++.
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 478899999999999998874
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.69 E-value=0.23 Score=43.92 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEecCCCCchhHHHHHhhc
Q 007334 122 TVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~ 142 (607)
.|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.20 E-value=0.21 Score=45.16 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.+.+.|+||+||||++..+...
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999988753
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=83.96 E-value=0.075 Score=46.62 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=18.3
Q ss_pred EEEEecCCCCchhHHHHHhh
Q 007334 122 TVMIIGRPNVGKSALFNRLI 141 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~ 141 (607)
..+|+|..|+|||||+.+|.
T Consensus 26 ~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57889999999999999985
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.89 E-value=0.15 Score=47.28 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhHHHHHhhcC
Q 007334 327 LAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 327 v~ivG~~nvGKSslin~l~~~ 347 (607)
+.+.|+||+|||++++++...
T Consensus 49 l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHH
Confidence 345699999999999998753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=83.83 E-value=0.24 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.6
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
.-|.+.|.||+|||+|.+++.+.
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHH
Confidence 45999999999999999999863
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=83.80 E-value=0.28 Score=43.82 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=19.6
Q ss_pred CceEEEEcCCCCchhHHHHHhhc
Q 007334 324 PLQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~~ 346 (607)
.+-|+|+|.+|+||||+.+.|..
T Consensus 3 k~iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 3 RYIVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 34589999999999999998763
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=83.76 E-value=0.28 Score=43.70 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
-|+|.|+||+||||+...|...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5788899999999999988743
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.61 E-value=0.32 Score=45.82 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCchhHHHHHhh
Q 007334 323 LPLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 323 ~~~~v~ivG~~nvGKSslin~l~ 345 (607)
.|+-|+|.|.+|+|||||...|.
T Consensus 26 ~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 26 CPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEeECCCCCCHHHHHHHHH
Confidence 47889999999999999988774
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=83.56 E-value=0.28 Score=43.65 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.3
Q ss_pred CceEEEEcCCCCchhHHHHHhh
Q 007334 324 PLQLAIVGRPNVGKSTLLNALL 345 (607)
Q Consensus 324 ~~~v~ivG~~nvGKSslin~l~ 345 (607)
.+-|+|.|..|+||||+.+.|.
T Consensus 2 ~~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 2 TYIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp CEEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999775
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=83.28 E-value=0.31 Score=42.35 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQED 348 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~ 348 (607)
.-|+++|++|+||||+.-.|....
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcC
Confidence 458999999999999999988654
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.06 E-value=0.28 Score=43.33 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchhHHHHHhhc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~ 346 (607)
-|+|-|..||||||++..|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.00 E-value=0.26 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
..|+|-|..||||||+++.|...
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.56 E-value=0.51 Score=42.92 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.4
Q ss_pred EEEEecCCCCchhHHHHHhhc
Q 007334 122 TVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~ 142 (607)
.+.|.|.+|+||||+...+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999998764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.56 E-value=0.32 Score=42.68 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.1
Q ss_pred CEEEEecCCCCchhHHHHHhhcc
Q 007334 121 PTVMIIGRPNVGKSALFNRLIRR 143 (607)
Q Consensus 121 ~~V~ivG~~nvGKSSL~n~L~~~ 143 (607)
-.+.|.|.||+|||+|...++..
T Consensus 24 ~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 24 SITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 47999999999999999988753
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=82.47 E-value=0.36 Score=41.94 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQED 348 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~ 348 (607)
.-|.+.|++|+||||+.-.|....
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999988653
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=82.44 E-value=0.46 Score=42.06 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCchhHHHHHhhc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~ 346 (607)
-.+++.|+||+|||.++++|++
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~ 75 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIH 75 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999998874
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.01 E-value=0.35 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCchhHHHHHhhcC
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~ 347 (607)
.-+.+.|+||+|||++++++.+.
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEecCCCCCchHHHHHHHHH
Confidence 45899999999999999999864
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=81.81 E-value=0.43 Score=41.15 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCchhHHHHHhhcCCc
Q 007334 325 LQLAIVGRPNVGKSTLLNALLQEDR 349 (607)
Q Consensus 325 ~~v~ivG~~nvGKSslin~l~~~~~ 349 (607)
.-|.+.|++|+||||+.-.|+....
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~g~ 40 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKRGH 40 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence 4689999999999999988886543
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=81.25 E-value=0.33 Score=43.22 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEecCCCCchhHHHHHhhc
Q 007334 122 TVMIIGRPNVGKSALFNRLIR 142 (607)
Q Consensus 122 ~V~ivG~~nvGKSSL~n~L~~ 142 (607)
-|+|-|..||||||+++.|..
T Consensus 4 fIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999875
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.64 E-value=0.34 Score=44.17 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.8
Q ss_pred eEEEEcCCCCchhHHHHHhhc
Q 007334 326 QLAIVGRPNVGKSTLLNALLQ 346 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~ 346 (607)
.+.+.|+||+||||++..+..
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~ 55 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLE 55 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998874
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.27 E-value=0.38 Score=43.32 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.0
Q ss_pred eEEEEcCCCCchhHHHHHhhcC
Q 007334 326 QLAIVGRPNVGKSTLLNALLQE 347 (607)
Q Consensus 326 ~v~ivG~~nvGKSslin~l~~~ 347 (607)
.+.+.|+||+||||++..++..
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHH
Confidence 3789999999999999988743
|