Citrus Sinensis ID: 007400
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKQ4 | 597 | Pentatricopeptide repeat- | yes | no | 0.958 | 0.971 | 0.586 | 0.0 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.922 | 0.709 | 0.354 | 1e-108 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.854 | 0.661 | 0.342 | 1e-101 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.902 | 0.783 | 0.326 | 1e-100 | |
| O23169 | 691 | Pentatricopeptide repeat- | no | no | 0.874 | 0.765 | 0.326 | 3e-97 | |
| Q9FRI5 | 790 | Pentatricopeptide repeat- | no | no | 0.834 | 0.639 | 0.359 | 7e-97 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.856 | 0.701 | 0.324 | 2e-95 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.958 | 0.763 | 0.305 | 6e-92 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.866 | 0.707 | 0.338 | 1e-90 | |
| Q56XI1 | 705 | Pentatricopeptide repeat- | no | no | 0.831 | 0.713 | 0.330 | 1e-87 |
| >sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/583 (58%), Positives = 445/583 (76%), Gaps = 3/583 (0%)
Query: 19 CLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
C+ QSFLS +K +LS+A+S L+ L Q+GIRLP + LA +LQQC ++KSLK GK +H H
Sbjct: 12 CVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRH 71
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
LK+T K P T LSNHLI MY KCG +DA KVFD++ ++NL+S+NNM+SGY GM+
Sbjct: 72 LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVR 131
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
AR +FD+M ERDVVSWNTM+IGYA+ G + E L FYK RR I NEFSFAG+LT CVK
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVK 191
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
+L+L RQ HGQVLV GFLSNVV+S SI+DAYAKCG++ A+R FDE +D+ WTT+
Sbjct: 192 SRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTL 251
Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
+SGYAKLGDME+A KLF EMPEKNPVSWT LIAGY R G G +AL+LF +M+ L ++P Q
Sbjct: 252 ISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQ 311
Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
TFSSCLCA ASI SL+HGK++HG++IRTN R N IV+SSLIDMYSK G L +VF +
Sbjct: 312 FTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRI 371
Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
D+K + + WNTMISAL QHG +A+R+ DM++ V+P++ TL VILNAC+HSGLV+E
Sbjct: 372 CDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEE 431
Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
GL +FESMT GI+P+QEH+ACLI+LL +AGC +LM ++E+MP+E D ++WNA+ GVC
Sbjct: 432 GLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVC 491
Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
RIHGN ++G+K D+LI +P+SSA + LLSSIY+ GK LVEK+R ++ +R+ KE+A
Sbjct: 492 RIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKA 551
Query: 558 ISWIEIENKVHAFSVSDS--LHPMRDVLYSVLEQLAGQMGEDA 598
+SWIEIE KV AF+VSD H ++ +Y +L LA + E+A
Sbjct: 552 VSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEEEA 594
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/564 (35%), Positives = 340/564 (60%), Gaps = 6/564 (1%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTF 89
GQ +AI + + + GI TL +L A ++ ++ GK+VH +KL R +
Sbjct: 125 GQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS-- 182
Query: 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
+SN L++MY KCG + A+ VFD++ V+++ S+N M++ + +G M A F+ MAERD
Sbjct: 183 VSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242
Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
+V+WN+MI G+ + G L F K+LR +S + F+ A +L+ C LE+L + +Q+H
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302
Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKLGD 266
++ TGF + ++ ++++ Y++CG + ARRL ++ +D + +T ++ GY KLGD
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362
Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
M A +F + +++ V+WT +I GY ++G +A+ LF M+ RPN +T ++ L
Sbjct: 363 MNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSV 422
Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
+S+ SL HGKQ+HG +++ + V ++LI MY+K G + + FDL + +++
Sbjct: 423 ASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVS 482
Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
W +MI AL QHG+ E+A+ LF M+ ++PD IT + +ACTH+GLV +G YF+ M
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542
Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
IIP H+AC+++L +AG + +EKMP E D W +L CR+H NID+G
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLG 602
Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
+ ++L+ P++S + L+++YSA GK K+R+ + + + KKEQ SWIE+++K
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662
Query: 567 VHAFSVSDSLHPMRDVLYSVLEQL 590
VH F V D HP ++ +Y ++++
Sbjct: 663 VHVFGVEDGTHPEKNEIYMTMKKI 686
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/560 (34%), Positives = 318/560 (56%), Gaps = 43/560 (7%)
Query: 66 KSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNM 125
++ LGK L + +R + N ++S Y + G DAR VFD++P KN S+N +
Sbjct: 138 RNRNLGKARELFEIMPERDVCSW---NTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNAL 194
Query: 126 LSGYANLGMMKHA-------------------------------RNLFDNMAERDVVSWN 154
LS Y M+ A R FD+M RDVVSWN
Sbjct: 195 LSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWN 254
Query: 155 TMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT 214
T+I GYA+SG ++E + + S + F++ +++ ++ ++ R++ ++
Sbjct: 255 TIITGYAQSGKIDEARQLFDE----SPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE- 309
Query: 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF 274
N V ++++ Y + + A+ LFD R+V TW TM++GYA+ G + A LF
Sbjct: 310 ---RNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 366
Query: 275 NEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334
++MP+++PVSW +IAGY+++G +AL LF +M R N+ +FSS L CA +V+L+
Sbjct: 367 DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALE 426
Query: 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISAL 394
GKQ+HG L++ + + V ++L+ MY KCG + + +F K+ + WNTMI+
Sbjct: 427 LGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD-IVSWNTMIAGY 485
Query: 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454
++HG+ E A+R F M R +KPD T+ +L+AC+H+GLV +G YF +MT D G++PN
Sbjct: 486 SRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPN 545
Query: 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514
+H+AC+++LL +AG + N ++ MP+E D+ +W L G R+HGN ++ D++
Sbjct: 546 SQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 605
Query: 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD 574
P++S + LLS++Y++ G+ V K+R + ++ KK SWIEI+NK H FSV D
Sbjct: 606 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665
Query: 575 SLHPMRDVLYSVLEQLAGQM 594
HP +D +++ LE+L +M
Sbjct: 666 EFHPEKDEIFAFLEELDLRM 685
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/595 (32%), Positives = 330/595 (55%), Gaps = 49/595 (8%)
Query: 13 KNLP--NNCLIQSFLSLISK-GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLK 69
+++P + C S +S ++ + EA+ ++ + G L + A +L C+ +
Sbjct: 110 RSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMN 169
Query: 70 LGKRVHLHLKLTQRKTP---TTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNML 126
G +VH + K+P ++ + L+ MY KCG+ DA++VF
Sbjct: 170 KGVQVHSLIA----KSPFLSDVYIGSALVDMYSKCGNVNDAQRVF--------------- 210
Query: 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF 186
D M +R+VVSWN++I + ++G E L ++++ + +E
Sbjct: 211 ----------------DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEV 254
Query: 187 SFAGILTICVKLEELKLTRQVHGQVLVTGFLSN-VVISSSIVDAYAKCGELSDARRLFDE 245
+ A +++ C L +K+ ++VHG+V+ L N +++S++ VD YAKC + +AR +FD
Sbjct: 255 TLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDS 314
Query: 246 TDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305
R+V+ T+M+SGYA ++A +F +M E+N VSW LIAGYT+NG ++AL LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 306 TRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH------GFLIRTNFRSNTIVMSSLI 359
+ + P ++F++ L ACA + L G Q H GF ++ + V +SLI
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419
DMY KCGC+ +G VF ++ + WN MI Q+GY +A+ LF +M+ S KPD
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERD-CVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDH 493
Query: 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLE 479
IT+ +L+AC H+G V+EG YF SMT D G+ P ++H+ C+++LL +AG ++ + +E
Sbjct: 494 ITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIE 553
Query: 480 KMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539
+MP + DS +W +L C++H NI +G+ V ++L++ P +S + LLS++Y+ LGK
Sbjct: 554 EMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWED 613
Query: 540 VEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
V VR+ + + K+ SWI+I+ H F V D HP + ++S+L+ L +M
Sbjct: 614 VMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEM 668
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 185/567 (32%), Positives = 320/567 (56%), Gaps = 38/567 (6%)
Query: 33 LSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92
L EA+ L R + PA T ++Q C+++++L+ GK+VH H++ T P + N
Sbjct: 70 LREAVQ----LLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIR-TSGFVPGIVIWN 124
Query: 93 HLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVS 152
L+ MY KCGS VDARKVFD++P ++L S+N M++GYA +G+++ AR LFD M E+D S
Sbjct: 125 RLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYS 184
Query: 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSIS-CNEFSFAGILTICVKLEELKLTRQVHGQV 211
W M+ GY K EE L Y +++R S N F+ + + ++ ++ +++HG +
Sbjct: 185 WTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHI 244
Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
+ G S+ V+ W++++ Y K G ++ A
Sbjct: 245 VRAGLDSDEVL-------------------------------WSSLMDMYGKCGCIDEAR 273
Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
+F+++ EK+ VSWT++I Y ++ ++ LF+ ++ RPN++TF+ L ACA +
Sbjct: 274 NIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLT 333
Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
+ + GKQVHG++ R F + SSL+DMY+KCG + + V D K + + W ++I
Sbjct: 334 TEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCP-KPDLVSWTSLI 392
Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
Q+G ++A++ F +++S KPD +T +L+ACTH+GLV++GL +F S+T +
Sbjct: 393 GGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRL 452
Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
+H+ CL++LLA++G +QL + + +MP + +LW ++ G C +GNID+ +
Sbjct: 453 SHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQ 512
Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
+L P++ T+ +++IY+A GK K+R+ + E K SW EI+ K H F
Sbjct: 513 ELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFI 572
Query: 572 VSDSLHPMRDVLYSVLEQLAGQMGEDA 598
+D+ HPM + + L +L +M E+
Sbjct: 573 AADTSHPMYNQIVEFLRELRKKMKEEG 599
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 184/512 (35%), Positives = 300/512 (58%), Gaps = 7/512 (1%)
Query: 88 TFLSNHLISMYFKCGSDVD----ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
T +SN L+S+Y KC S ARKVFD+I K+ S+ M++GY G L +
Sbjct: 184 TSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLE 243
Query: 144 NMAER-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
M + +V++N MI GY G +E L+ + + I +EF++ ++ C L+
Sbjct: 244 GMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQ 303
Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
L +QVH VL S +S+V Y KCG+ +AR +F++ A+D+++W ++SGY
Sbjct: 304 LGKQVHAYVLRREDFS-FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 362
Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
G + A +F EM EKN +SW +I+G NG G++ L+LF+ M P + FS
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422
Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
+ +CA + + +G+Q H L++ F S+ ++LI MY+KCG + + RQVF T
Sbjct: 423 AIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR-TMPCL 481
Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
+S+ WN +I+AL QHG+ +A+ ++ +M++ ++PD+ITL +L AC+H+GLV +G YF
Sbjct: 482 DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYF 541
Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
+SM I P +H+A LI+LL ++G + +E +P++ + +W AL CR+HGN
Sbjct: 542 DSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGN 601
Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
+++G D+L P+ T+ LLS++++A G+ V +VR+L+ +R KKE A SWIE
Sbjct: 602 MELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIE 661
Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
+E +VH F V D+ HP + +Y L+ L +M
Sbjct: 662 METQVHTFLVDDTSHPEAEAVYIYLQDLGKEM 693
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 179/552 (32%), Positives = 308/552 (55%), Gaps = 34/552 (6%)
Query: 40 LDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99
LD++++ T F+++ AE SL LG+ +H + + F++N LI YF
Sbjct: 119 LDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLH-GMAVKSAVGSDVFVANSLIHCYF 177
Query: 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIG 159
CG D+D+ A +F + E+DVVSWN+MI G
Sbjct: 178 SCG-DLDS------------------------------ACKVFTTIKEKDVVSWNSMING 206
Query: 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219
+ + G+ ++ L+ +K + + + + G+L+ C K+ L+ RQV + N
Sbjct: 207 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVN 266
Query: 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279
+ ++++++D Y KCG + DA+RLFD + +D +TWTTM+ GYA D E+A ++ N MP+
Sbjct: 267 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQ 338
K+ V+W LI+ Y +NG +AL +F + + + ++ NQ T S L ACA + +L+ G+
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG 398
+H ++ + R N V S+LI MYSKCG L R+VF+ + K + +W+ MI L HG
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHG 445
Query: 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458
+A+ +F+ M ++VKP+ +T + AC+H+GLV E + F M + GI+P ++H+
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505
Query: 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518
AC++++L ++G ++ + +E MP + +W AL G C+IH N+++ +L++ P
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565
Query: 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHP 578
++ H LLS+IY+ LGK V ++R+ + KKE S IEI+ +H F D+ HP
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625
Query: 579 MRDVLYSVLEQL 590
M + +Y L ++
Sbjct: 626 MSEKVYGKLHEV 637
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 182/596 (30%), Positives = 325/596 (54%), Gaps = 16/596 (2%)
Query: 21 IQSFLSLI---SKGQL-SEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHL 76
I SF SLI +K +L +++I + G+ + L + + CAE + K+GK++H
Sbjct: 81 IYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHC 140
Query: 77 HLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
+ F+ + MY +CG DARKVFD++ K++ + + +L YA G ++
Sbjct: 141 -VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLE 199
Query: 137 HARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192
+ M E ++VSWN ++ G+ +SG +E + ++ + ++ + + +L
Sbjct: 200 EVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVL 259
Query: 193 TICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL 252
E L + R +HG V+ G L + + S+++D Y K G + LF++ + +
Sbjct: 260 PSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG 319
Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRM 308
++G ++ G ++ A ++F E+ N VSWT++IAG +NG +ALELF M
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM 379
Query: 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368
+ ++PN T S L AC +I +L HG+ HGF +R + N V S+LIDMY+KCG +
Sbjct: 380 QVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRI 439
Query: 369 NDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
N + VF++ K N + WN++++ + HG ++ + +F ++R+ +KPD I+ +L+A
Sbjct: 440 NLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498
Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488
C GL EG YF+ M+ + GI P EH++C++ LL +AG + + +++MP+E DS
Sbjct: 499 CGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSC 558
Query: 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548
+W AL CR+ N+D+ ++L P++ T+ LLS+IY+A G V+ +R +
Sbjct: 559 VWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKME 618
Query: 549 ERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLD 602
KK SWI+++N+V+ D HP D + +++++ +M + P+LD
Sbjct: 619 SLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLD 674
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 190/562 (33%), Positives = 310/562 (55%), Gaps = 38/562 (6%)
Query: 34 SEAISSLDL---LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
S+ +S+L L + G+ + T F+L+ CA+SK+ K G+++H H+ L ++
Sbjct: 113 SDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHV-LKLGCDLDLYV 171
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
LISMY + G DA KVFDK P +++ SY ++ GYA+ G +++A+ LFD + +DV
Sbjct: 172 HTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 231
Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
VSWN MI GYA++G +E L+ +K + + ++ +E + +++ C + ++L RQVH
Sbjct: 232 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLW 291
Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
+ GF SN+ I ++++D Y+KCGEL E+A
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGEL-------------------------------ETA 320
Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
LF +P K+ +SW TLI GYT L ++AL LF M+ PN T S L ACA +
Sbjct: 321 CGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL 380
Query: 331 VSLKHGKQVHGFLIR--TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN 388
++ G+ +H ++ + + + + +SLIDMY+KCG + QVF+ +K S WN
Sbjct: 381 GAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WN 439
Query: 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448
MI HG + + LF M + ++PD IT +L+AC+HSG++ G F +MT D
Sbjct: 440 AMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQD 499
Query: 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRK 508
+ P EH+ C+I+LL +G + + M E D +W +L C++HGN+++G
Sbjct: 500 YKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGES 559
Query: 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVH 568
+ LI P++ ++ LLS+IY++ G+ V K R L+N++ KK S IEI++ VH
Sbjct: 560 FAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVH 619
Query: 569 AFSVSDSLHPMRDVLYSVLEQL 590
F + D HP +Y +LE++
Sbjct: 620 EFIIGDKFHPRNREIYGMLEEM 641
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410 OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 186/562 (33%), Positives = 304/562 (54%), Gaps = 59/562 (10%)
Query: 92 NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
N +++ YF DARK+FD++P +N+ S+N ++SGY G + AR +FD M ER+VV
Sbjct: 52 NSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVV 111
Query: 152 SWNTMIIGYAKSGAVE--EGLKFYKVLRRFSISCN----EFSFAGILTICVKLEEL---- 201
SW ++ GY +G V+ E L F+K+ + +S F G + KL E+
Sbjct: 112 SWTALVKGYVHNGKVDVAESL-FWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK 170
Query: 202 ---KLTRQVHG-----------QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247
T +HG ++ +V+ +++V Y + + DAR++FD
Sbjct: 171 DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230
Query: 248 ARDVLTWTTMVSGYAKLGDMESASKLFNEMP----------------------------- 278
+ ++WT+M+ GY + G +E A +LF MP
Sbjct: 231 EKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDS 290
Query: 279 --EKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336
E+N SW T+I + RNG +AL+LF M +RP T S L CAS+ SL HG
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHG 350
Query: 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
KQVH L+R F + V S L+ MY KCG L + +FD +K + ++WN++IS
Sbjct: 351 KQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYAS 409
Query: 397 HGYDEQAIRLFHDMVRS-SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ 455
HG E+A+++F +M S S KP+++T L+AC+++G+V+EGL +ESM G+ P
Sbjct: 410 HGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPIT 469
Query: 456 EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515
H+AC++++L +AG ++ M ++ M E D+ +W +L G CR H +D+ +LI+
Sbjct: 470 AHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIE 529
Query: 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSD- 574
P++S T+ LLS++Y++ G+ V ++R+L+ R +K SW E+ENKVHAF+
Sbjct: 530 IEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGI 589
Query: 575 SLHPMRDVLYSVLEQLAGQMGE 596
+ HP ++ + +L++L G + E
Sbjct: 590 NSHPEQESILKILDELDGLLRE 611
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| 225427963 | 612 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.988 | 0.653 | 0.0 | |
| 255574750 | 602 | pentatricopeptide repeat-containing prot | 0.981 | 0.986 | 0.640 | 0.0 | |
| 449530628 | 611 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.975 | 0.588 | 0.0 | |
| 449438554 | 611 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.975 | 0.587 | 0.0 | |
| 15226463 | 597 | pentatricopeptide repeat-containing prot | 0.958 | 0.971 | 0.586 | 0.0 | |
| 297824945 | 599 | pentatricopeptide repeat-containing prot | 0.958 | 0.968 | 0.577 | 0.0 | |
| 297744641 | 516 | unnamed protein product [Vitis vinifera] | 0.833 | 0.976 | 0.655 | 0.0 | |
| 297821407 | 786 | pentatricopeptide repeat-containing prot | 0.922 | 0.709 | 0.361 | 1e-112 | |
| 242050732 | 802 | hypothetical protein SORBIDRAFT_02g03796 | 0.922 | 0.695 | 0.357 | 1e-108 | |
| 224096249 | 747 | predicted protein [Populus trichocarpa] | 0.890 | 0.721 | 0.366 | 1e-108 |
| >gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/612 (65%), Positives = 496/612 (81%), Gaps = 7/612 (1%)
Query: 1 MPS------NFSPRGIN-RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE 53
MPS NFSP N RK CL+++ + L K +L+EA+SSL+ LA+RG+RL +
Sbjct: 1 MPSLSSPNLNFSPFRTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSR 60
Query: 54 TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
TLA +LQ CA+S++L+ GKRVHLHLKLT K P TFLSNHLI+MY KCG +V+ARKVFDK
Sbjct: 61 TLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDK 120
Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
+ +NL+S+NNMLSGYA LGM+K AR LFD M E+DVVSWNTM+I +A+ G +E L+FY
Sbjct: 121 MSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFY 180
Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
R+ I CN FSFAG+LT+CVKL+E+ LTRQVHGQ+LV GFLSNVV+SSS++DAY KC
Sbjct: 181 SEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKC 240
Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
G + DAR+LFDE ARDVL WTTMVSGYAK GDM+SA++LF EMPEKNPVSWT LI+GY
Sbjct: 241 GLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYA 300
Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
RNG+G KALELFT+MM+ +RP+Q TFSSCLCACASI SLKHGKQ+H +L+R NF+ NTI
Sbjct: 301 RNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTI 360
Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
V+S+LIDMYSKCG L GR+VFDL NK + +LWNT+ISAL QHG E+AI++ DMVRS
Sbjct: 361 VVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRS 420
Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
KPDKIT VILNAC+HSGLVQ+GL +FESM+ D GI+P+QEH+ACLI+LL +AGC ++
Sbjct: 421 GAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEE 480
Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533
+M+QLEKMPY+ D +WNAL GVCRIHG+I++GRK ++LI+ PQSS + LLSSIY+
Sbjct: 481 VMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAV 540
Query: 534 LGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQ 593
LG+ V+KVRQL+NERQ KKE+AISW+EIENKVH+FSVSDS HP+++ +YSVLEQLAGQ
Sbjct: 541 LGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSVLEQLAGQ 600
Query: 594 MGEDAPSLDADR 605
M EDA A R
Sbjct: 601 MEEDASLFIAQR 612
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/596 (64%), Positives = 481/596 (80%), Gaps = 2/596 (0%)
Query: 1 MPSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQ 60
MP++ K +P C+++S L L S+GQL +AISSL LL++ GIRLP++TLA++LQ
Sbjct: 1 MPTSSKFHSNRTKRVP--CIVKSLLHLSSQGQLFQAISSLGLLSRNGIRLPSKTLAYLLQ 58
Query: 61 QCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
QCA +KSLKLGK VHLHLK+T K P TFL+NHLI+MY KCG A KVFD++ +NL+
Sbjct: 59 QCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLY 118
Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180
S+N MLSGYA LG +K AR LFD M E+DVVSWNTM+I YAKSG + L+FY+ LRR
Sbjct: 119 SWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLG 178
Query: 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDAR 240
I NE+SFAG+L ICVK++EL+L++Q HGQVLV GFLSN+VISSS++DAYAKC E+ DAR
Sbjct: 179 IGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDAR 238
Query: 241 RLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300
RLFDE RDVL WTTMVSGYA+ GD+E+A +LF+ MPEKNPV+WT+LIAGY R+ LG K
Sbjct: 239 RLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHK 298
Query: 301 ALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
ALELFT+MM L IRP+Q TFSSCLCA ASI SL HGKQ+HG+LIRTN R NTIV+SSLID
Sbjct: 299 ALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLID 358
Query: 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420
MYSKCGCL GR VFDL +K + +LWNT+IS+L QHG ++AI++F DMVR +KPD+I
Sbjct: 359 MYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRI 418
Query: 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480
TL V+LNAC+HSGLVQEGL +ES+T G+IPNQEH+ACLI+LL +AG D LMNQLEK
Sbjct: 419 TLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEK 478
Query: 481 MPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540
MP + + +WNAL GVCR+HGNI+ GR+V +++I+ +PQSSA + LLSSI++A+G+ LV
Sbjct: 479 MPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELV 538
Query: 541 EKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
E VRQL+NER +K++AISWIEIENKVH+F+ SD LHP+++V+Y L+QLAG M E
Sbjct: 539 ENVRQLMNERHVRKDRAISWIEIENKVHSFTASDRLHPLKEVIYLALKQLAGHMEE 594
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/596 (58%), Positives = 460/596 (77%)
Query: 2 PSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
P++F P+ R + C+ QS L L S+G+L EA+S LD LAQRGIRLP +L+
Sbjct: 12 PASFGPKSKQRPDSTGLCIAQSLLDLSSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRL 71
Query: 62 CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
CA++K K GK VHLHLK T K PTT ++NHLI MYF+CG DV+ARKVFDK+ V+NL+S
Sbjct: 72 CAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYS 131
Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
+N+ML+GYA LG + +AR LFD M E+DVVSWNT+++ YAK G E + Y+ RR +
Sbjct: 132 WNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDM 191
Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
N FSFAG+L +CVKL+EL+L +QVHGQVLV GFLSN+V+SSSIVDAY+KCGE+ AR
Sbjct: 192 GFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCART 251
Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
LFDE +D+ WTT+VSGYAK GDM SAS+LF++MPEKNPVSW+ LI+GY RN LG +A
Sbjct: 252 LFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEA 311
Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
L+ FT+MM I P Q+TFSSCLCACASI +LKHGKQVHG+LIRT FR NTIV+SSLIDM
Sbjct: 312 LDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDM 371
Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
YSKCG L VF L NK++ ++WNTMISAL Q+G+ E+A+++F+DMV S +KPD+IT
Sbjct: 372 YSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRIT 431
Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
VIL+AC+HSGLVQEGL +F++MT+D G+ P+QEH+ACLI+LL +AGC +L+N+LE M
Sbjct: 432 FIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENM 491
Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
+ D +W+AL GVCRIH NI++GRKV +++I+ PQSSA + L+S+Y+ LGK VE
Sbjct: 492 SCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVE 551
Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
KVR+L++E+ +KE+ ISWI++ NK H+F SD LHP+++ +Y +LEQLA ED
Sbjct: 552 KVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARHTEED 607
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/596 (58%), Positives = 461/596 (77%)
Query: 2 PSNFSPRGINRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQ 61
P++F P+ R + + C+ QS L L S+G+L EA+S LD LAQRG+RLP +L+
Sbjct: 12 PASFGPKSKQRPDSTSLCIAQSLLDLSSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRL 71
Query: 62 CAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFS 121
CA++K K GK VHLHLK T K PTT ++NHLI MYF+CG DV+ARKVFDK+ V+NL+S
Sbjct: 72 CAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYS 131
Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
+N+ML+GYA LG + +AR LFD M E+DVVSWNT+++ YAK G E + Y+ RR +
Sbjct: 132 WNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDM 191
Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
N FSFAG+L +CVKL+EL+L +QVHGQVLV GFLSN+V+SSSIVDAYAKCGE+ AR
Sbjct: 192 GFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCART 251
Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
LFDE +D+ WTT+VSGYAK GDM SAS+LF++MPEKNPVSW+ LI+GY RN LG +A
Sbjct: 252 LFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEA 311
Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
L+ FT+MM I P Q+TFSSCLCACASI +LKHGKQVHG+LIRT FR NTIV+SSLIDM
Sbjct: 312 LDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDM 371
Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
YSKCG L VF L NK++ ++WNTMISAL Q+G+ E+A+++F+DMV S +KPD+IT
Sbjct: 372 YSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRIT 431
Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
VIL+AC+HSGLVQEGL +F++MT+D G+ P+QEH++CLI+LL +AGC +L+N+LE M
Sbjct: 432 FIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENM 491
Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
+ D +W+AL GVCRIH NI++GRKV +++I+ PQSSA + L+S+Y+ LGK VE
Sbjct: 492 SCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYAFLGKWESVE 551
Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597
KVR+L++E+ +KE+ ISWI++ NK H+F SD LHP+++ +Y +LEQLA ED
Sbjct: 552 KVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLARHTEED 607
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/583 (58%), Positives = 445/583 (76%), Gaps = 3/583 (0%)
Query: 19 CLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
C+ QSFLS +K +LS+A+S L+ L Q+GIRLP + LA +LQQC ++KSLK GK +H H
Sbjct: 12 CVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRH 71
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
LK+T K P T LSNHLI MY KCG +DA KVFD++ ++NL+S+NNM+SGY GM+
Sbjct: 72 LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVR 131
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
AR +FD+M ERDVVSWNTM+IGYA+ G + E L FYK RR I NEFSFAG+LT CVK
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVK 191
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
+L+L RQ HGQVLV GFLSNVV+S SI+DAYAKCG++ A+R FDE +D+ WTT+
Sbjct: 192 SRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTL 251
Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
+SGYAKLGDME+A KLF EMPEKNPVSWT LIAGY R G G +AL+LF +M+ L ++P Q
Sbjct: 252 ISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQ 311
Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
TFSSCLCA ASI SL+HGK++HG++IRTN R N IV+SSLIDMYSK G L +VF +
Sbjct: 312 FTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRI 371
Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
D+K + + WNTMISAL QHG +A+R+ DM++ V+P++ TL VILNAC+HSGLV+E
Sbjct: 372 CDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEE 431
Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
GL +FESMT GI+P+QEH+ACLI+LL +AGC +LM ++E+MP+E D ++WNA+ GVC
Sbjct: 432 GLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVC 491
Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
RIHGN ++G+K D+LI +P+SSA + LLSSIY+ GK LVEK+R ++ +R+ KE+A
Sbjct: 492 RIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKA 551
Query: 558 ISWIEIENKVHAFSVSDS--LHPMRDVLYSVLEQLAGQMGEDA 598
+SWIEIE KV AF+VSD H ++ +Y +L LA + E+A
Sbjct: 552 VSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEEEA 594
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/585 (57%), Positives = 446/585 (76%), Gaps = 5/585 (0%)
Query: 19 CLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
C+ +S LS +K +LS+A+S L+ L Q+GIRLP + LA +LQQC ++KSLK GK +H H
Sbjct: 12 CVARSLLSRHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRH 71
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
LK+T K P T LSNHLI MY KCG +DA KVFD++ ++NL+S+NNM+SG+ GM+
Sbjct: 72 LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVR 131
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
AR +FD+M ERDVVSWNTM+IGYA+ G + E L F+K LRR I NEFSFAG+LT CVK
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVK 191
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
+L+L +Q HGQVLV GFLSNVV+S SI+DAYAKCG++ A+R FDE +D+ WTT+
Sbjct: 192 SRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTL 251
Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
+SGYAKLGDME+A KLF EMPEKNPVSWT LIAGY R G G AL+LF +M+ +R++P Q
Sbjct: 252 ISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQ 311
Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
TFSSCLCA ASI SL+HGKQ+HG++IRTN R N IV SSLIDMYSK G L +VF +
Sbjct: 312 FTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRI 371
Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
+K++ +LWNTMISAL QHG +A+++ DM++ V P++ TL VILNAC+HSGLV+E
Sbjct: 372 CYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEE 431
Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
G+ +FESMT GI+P+QEH+ACLI+LL +AGC +LM+++E+MP+E D ++WNA+ GVC
Sbjct: 432 GVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVC 491
Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
RIHGN ++G+K ++LI +P+SSA + LLSSIY+ GK LVEK+R ++ +R+ KE+A
Sbjct: 492 RIHGNEELGKKAAEELIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNKEKA 551
Query: 558 ISWIEIENKVHAFSVSDS----LHPMRDVLYSVLEQLAGQMGEDA 598
+SWIEIENKV AF+VSD H ++ +Y +L LA M E+A
Sbjct: 552 VSWIEIENKVKAFTVSDGSHAHAHARKEEIYFILHNLAALMEEEA 596
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/511 (65%), Positives = 415/511 (81%), Gaps = 7/511 (1%)
Query: 1 MPS------NFSPRGIN-RKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAE 53
MPS NFSP N RK CL+++ + L K +L+EA+SSL+ LA+RG+RL +
Sbjct: 1 MPSLSSPNLNFSPFRTNPRKPRRRPCLVEAIVKLCKKNKLNEAVSSLENLARRGLRLDSR 60
Query: 54 TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDK 113
TLA +LQ CA+S++L+ GKRVHLHLKLT K P TFLSNHLI+MY KCG +V+ARKVFDK
Sbjct: 61 TLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDK 120
Query: 114 IPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY 173
+ +NL+S+NNMLSGYA LGM+K AR LFD M E+DVVSWNTM+I +A+ G +E L+FY
Sbjct: 121 MSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFY 180
Query: 174 KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233
R+ I CN FSFAG+LT+CVKL+E+ LTRQVHGQ+LV GFLSNVV+SSS++DAY KC
Sbjct: 181 SEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKC 240
Query: 234 GELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYT 293
G + DAR+LFDE ARDVL WTTMVSGYAK GDM+SA++LF EMPEKNPVSWT LI+GY
Sbjct: 241 GLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYA 300
Query: 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353
RNG+G KALELFT+MM+ +RP+Q TFSSCLCACASI SLKHGKQ+H +L+R NF+ NTI
Sbjct: 301 RNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTI 360
Query: 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS 413
V+S+LIDMYSKCG L GR+VFDL NK + +LWNT+ISAL QHG E+AI++ DMVRS
Sbjct: 361 VVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRS 420
Query: 414 SVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473
KPDKIT VILNAC+HSGLVQ+GL +FESM+ D GI+P+QEH+ACLI+LL +AGC ++
Sbjct: 421 GAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEE 480
Query: 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNID 504
+M+QLEKMPY+ D +WNAL GVCRIHG+I+
Sbjct: 481 VMDQLEKMPYKPDDRVWNALLGVCRIHGHIE 511
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/564 (36%), Positives = 343/564 (60%), Gaps = 6/564 (1%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTF 89
GQ +AI + + + GI TL +L A ++ L+ GK+VH +KL R +
Sbjct: 125 GQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVS-- 182
Query: 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
+SN L++MY KCG + A+ VFD++ VK++ S+N M++ + +G M A F+ MAERD
Sbjct: 183 VSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242
Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
+V+WN+MI GY + G L F K+LR +S + F+ A +L+ C LE+L + Q+H
Sbjct: 243 IVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIH 302
Query: 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKLGD 266
++ TGF + ++ ++++ Y++CG + ARRL ++ +D + +T ++ GY KLGD
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362
Query: 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326
M A +F+ + +++ V+WT +I GY ++GL +A+ LF M+ RPN +T ++ L
Sbjct: 363 MNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSV 422
Query: 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386
+S+ SL HGKQ+HG +++ + V ++LI MY+K G + + FDL + +++
Sbjct: 423 ASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVS 482
Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446
W +MI AL QHG+ E+A+ LF M+ ++PD IT + +ACTH+GLV +G YF+ M
Sbjct: 483 WTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMK 542
Query: 447 HDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMG 506
IIP H+AC+++L +AG + +EKMP E D W +L CR++ NID+G
Sbjct: 543 DVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLG 602
Query: 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENK 566
+ ++L+ P++S + L+++YSA GK K+R+ + + + KKEQ SWIE+++K
Sbjct: 603 KVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHK 662
Query: 567 VHAFSVSDSLHPMRDVLYSVLEQL 590
VHAF V D +HP ++ +Y ++++
Sbjct: 663 VHAFGVEDGIHPQKNEIYITMKKI 686
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor] gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/582 (35%), Positives = 324/582 (55%), Gaps = 24/582 (4%)
Query: 21 IQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQ-QCAESKSLKLGKRVHLHLK 79
+ F SL++ G L S L LP ++ Q QC+ KS G
Sbjct: 141 VAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGG-------- 192
Query: 80 LTQRKTPTTFLSNHLISMYFKCGS---DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136
+SN L+++Y KC + DARKV D++P K+ ++ M+ GY G +
Sbjct: 193 -------VLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVG 245
Query: 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICV 196
AR++F+ + + V WN MI GY SG V E + ++ + + +EF+F +L+ C
Sbjct: 246 AARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACA 305
Query: 197 KLEELKLTRQVHGQV--LVTGFLSNVV--ISSSIVDAYAKCGELSDARRLFDETDARDVL 252
+ VHGQ+ L F+ +++++V Y+KCG ++ ARR+FD ++DV+
Sbjct: 306 NAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVV 365
Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312
+W T++SGY + ++ A ++F EMP KN +SW +++GY G + AL+LF RM
Sbjct: 366 SWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAED 425
Query: 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372
++P +T++ + AC + SLKHGKQ+HG L++ F + ++LI MY++CG + +
Sbjct: 426 VKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEAN 485
Query: 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432
+F + N + S+ WN MISAL QHG+ +A+ LF MV + PD+I+ +L AC HS
Sbjct: 486 LMFLVMPNID-SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHS 544
Query: 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492
GLV EG YFESM D GIIP ++H+ LI+LL +AG + + ++ MP+E +W A
Sbjct: 545 GLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEA 604
Query: 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552
+ CR G++++G DQL PQ T+ LLS+ YSA G+ +VR+L+ +R
Sbjct: 605 ILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGV 664
Query: 553 KKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
KKE SWIE NKVH F V D+ HP +Y LE + +M
Sbjct: 665 KKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARM 706
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa] gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/546 (36%), Positives = 330/546 (60%), Gaps = 7/546 (1%)
Query: 50 LPAE-TLAFILQQCAESKSLKLGKRVH-LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDA 107
LP + TL +L CA + S +GK+VH +KL ++N L++MY K G A
Sbjct: 104 LPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVP--VANSLLNMYAKTGDLKMA 161
Query: 108 RKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVE 167
+ VFD++ ++N S+N M+S + N G + A F+ ++ERD+VSWN+MI G + G
Sbjct: 162 KVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDN 221
Query: 168 EGLKFYK-VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226
E L+F+ +L+ S+ + FS A L+ C LE+L +Q+HG ++ T F ++ + +++
Sbjct: 222 EALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNAL 281
Query: 227 VDAYAKCGELSDARRLFDETDARD--VLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284
+ YAK G + ARR+ +++ D V+ +T +++GY KLGD+ A ++FN + + + V+
Sbjct: 282 ISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVA 341
Query: 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
WT +I GY +NGL A+E+F M+ RPN T ++ L A +S+ SL HGKQ+H I
Sbjct: 342 WTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAI 401
Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAI 404
R+ + V ++L MY+K G +N R+VF+L +++ W +MI AL QHG E+AI
Sbjct: 402 RSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAI 461
Query: 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464
LF M+ +KPD IT +L+ACTH GLV++G +YF+ M + I P H+AC+++L
Sbjct: 462 ELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDL 521
Query: 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524
+AG + +E MP E D W +L C+++ N+D+ + ++L+ P +S +
Sbjct: 522 FGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAY 581
Query: 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLY 584
L+++YS+ GK K+R+L+ R KKEQ +SW++I+NK H F V D LHP +D +Y
Sbjct: 582 SALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIY 641
Query: 585 SVLEQL 590
+++++
Sbjct: 642 KMMDKI 647
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| TAIR|locus:2047017 | 597 | AT2G21090 "AT2G21090" [Arabido | 0.958 | 0.971 | 0.586 | 6.2e-188 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.920 | 0.708 | 0.357 | 3.2e-104 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.808 | 0.701 | 0.351 | 5e-92 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.834 | 0.639 | 0.359 | 1.5e-90 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.809 | 0.627 | 0.356 | 2.5e-90 | |
| TAIR|locus:2198546 | 760 | AT1G20230 "AT1G20230" [Arabido | 0.983 | 0.782 | 0.300 | 8.6e-88 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.780 | 0.639 | 0.341 | 6e-87 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.557 | 0.393 | 0.353 | 2.4e-86 | |
| TAIR|locus:2025242 | 695 | AT1G77010 [Arabidopsis thalian | 0.885 | 0.771 | 0.324 | 1e-82 | |
| TAIR|locus:2027589 | 611 | PGN "AT1G56570" [Arabidopsis t | 0.565 | 0.559 | 0.355 | 1.3e-82 |
| TAIR|locus:2047017 AT2G21090 "AT2G21090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1822 (646.4 bits), Expect = 6.2e-188, P = 6.2e-188
Identities = 342/583 (58%), Positives = 445/583 (76%)
Query: 19 CLIQSFLSL-ISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
C+ QSFLS +K +LS+A+S L+ L Q+GIRLP + LA +LQQC ++KSLK GK +H H
Sbjct: 12 CVAQSFLSKHATKAELSQAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRH 71
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
LK+T K P T LSNHLI MY KCG +DA KVFD++ ++NL+S+NNM+SGY GM+
Sbjct: 72 LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVR 131
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
AR +FD+M ERDVVSWNTM+IGYA+ G + E L FYK RR I NEFSFAG+LT CVK
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVK 191
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
+L+L RQ HGQVLV GFLSNVV+S SI+DAYAKCG++ A+R FDE +D+ WTT+
Sbjct: 192 SRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTL 251
Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
+SGYAKLGDME+A KLF EMPEKNPVSWT LIAGY R G G +AL+LF +M+ L ++P Q
Sbjct: 252 ISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQ 311
Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
TFSSCLCA ASI SL+HGK++HG++IRTN R N IV+SSLIDMYSK G L +VF +
Sbjct: 312 FTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRI 371
Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
D+K + + WNTMISAL QHG +A+R+ DM++ V+P++ TL VILNAC+HSGLV+E
Sbjct: 372 CDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEE 431
Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
GL +FESMT GI+P+QEH+ACLI+LL +AGC +LM ++E+MP+E D ++WNA+ GVC
Sbjct: 432 GLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVC 491
Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
RIHGN ++G+K D+LI +P+SSA + LLSSIY+ GK LVEK+R ++ +R+ KE+A
Sbjct: 492 RIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKA 551
Query: 558 ISWIEIENKVHAFSVSDS--LHPMRDVLYSVLEQLAGQMGEDA 598
+SWIEIE KV AF+VSD H ++ +Y +L LA + E+A
Sbjct: 552 VSWIEIEKKVEAFTVSDGSHAHARKEEIYFILHNLAAVIEEEA 594
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 202/565 (35%), Positives = 342/565 (60%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHL-KLTQRKTPTTF 89
GQ +AI + + + GI TL +L A ++ ++ GK+VH + KL R +
Sbjct: 125 GQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS-- 182
Query: 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD 149
+SN L++MY KCG + A+ VFD++ V+++ S+N M++ + +G M A F+ MAERD
Sbjct: 183 VSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242
Query: 150 VVSWNTMIIGYAKSGAVEEGLK-FYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208
+V+WN+MI G+ + G L F K+LR +S + F+ A +L+ C LE+L + +Q+H
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302
Query: 209 GQVLVTGF-LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT--WTTMVSGYAKLG 265
++ TGF +S +V+++ ++ Y++CG + ARRL ++ +D+ +T ++ GY KLG
Sbjct: 303 SHIVTTGFDISGIVLNA-LISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLG 361
Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
DM A +F + +++ V+WT +I GY ++G +A+ LF M+ RPN +T ++ L
Sbjct: 362 DMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLS 421
Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
+S+ SL HGKQ+HG +++ + V ++LI MY+K G + + FDL + +++
Sbjct: 422 VASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTV 481
Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
W +MI AL QHG+ E+A+ LF M+ ++PD IT + +ACTH+GLV +G YF+ M
Sbjct: 482 SWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMM 541
Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
IIP H+AC+++L +AG + +EKMP E D W +L CR+H NID+
Sbjct: 542 KDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDL 601
Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
G+ ++L+ P++S + L+++YSA GK K+R+ + + + KKEQ SWIE+++
Sbjct: 602 GKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKH 661
Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQL 590
KVH F V D HP ++ +Y ++++
Sbjct: 662 KVHVFGVEDGTHPEKNEIYMTMKKI 686
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
Identities = 175/498 (35%), Positives = 297/498 (59%)
Query: 105 VDARKVFDKIP-VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKS 163
V + K P + +++ + ++ Y+ G + A+ +FD M +R+VVSWN++I + ++
Sbjct: 172 VQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQN 231
Query: 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN-VVI 222
G E L ++++ + +E + A +++ C L +K+ ++VHG+V+ L N +++
Sbjct: 232 GPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIIL 291
Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282
S++ VD YAKC + +AR +FD R+V+ T+M+SGYA ++A +F +M E+N
Sbjct: 292 SNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNV 351
Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH-- 340
VSW LIAGYT+NG ++AL LF + + P ++F++ L ACA + L G Q H
Sbjct: 352 VSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVH 411
Query: 341 ----GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ 396
GF ++ + V +SLIDMY KCGC+ +G VF ++ + WN MI Q
Sbjct: 412 VLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERD-CVSWNAMIIGFAQ 470
Query: 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456
+GY +A+ LF +M+ S KPD IT+ +L+AC H+G V+EG YF SMT D G+ P ++
Sbjct: 471 NGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRD 530
Query: 457 HHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516
H+ C+++LL +AG ++ + +E+MP + DS +W +L C++H NI +G+ V ++L++
Sbjct: 531 HYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEV 590
Query: 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSL 576
P +S + LLS++Y+ LGK V VR+ + + K+ SWI+I+ H F V D
Sbjct: 591 EPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKS 650
Query: 577 HPMRDVLYSVLEQLAGQM 594
HP + ++S+L+ L +M
Sbjct: 651 HPRKKQIHSLLDILIAEM 668
|
|
| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 184/512 (35%), Positives = 300/512 (58%)
Query: 88 TFLSNHLISMYFKCGSDVD----ARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFD 143
T +SN L+S+Y KC S ARKVFD+I K+ S+ M++GY G L +
Sbjct: 184 TSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLE 243
Query: 144 NMAER-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
M + +V++N MI GY G +E L+ + + I +EF++ ++ C L+
Sbjct: 244 GMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQ 303
Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
L +QVH VL S +S+V Y KCG+ +AR +F++ A+D+++W ++SGY
Sbjct: 304 LGKQVHAYVLRREDFS-FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYV 362
Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
G + A +F EM EKN +SW +I+G NG G++ L+LF+ M P + FS
Sbjct: 363 SSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSG 422
Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
+ +CA + + +G+Q H L++ F S+ ++LI MY+KCG + + RQVF T
Sbjct: 423 AIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR-TMPCL 481
Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
+S+ WN +I+AL QHG+ +A+ ++ +M++ ++PD+ITL +L AC+H+GLV +G YF
Sbjct: 482 DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYF 541
Query: 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGN 502
+SM I P +H+A LI+LL ++G + +E +P++ + +W AL CR+HGN
Sbjct: 542 DSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGN 601
Query: 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIE 562
+++G D+L P+ T+ LLS++++A G+ V +VR+L+ +R KKE A SWIE
Sbjct: 602 MELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIE 661
Query: 563 IENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
+E +VH F V D+ HP + +Y L+ L +M
Sbjct: 662 METQVHTFLVDDTSHPEAEAVYIYLQDLGKEM 693
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 178/499 (35%), Positives = 298/499 (59%)
Query: 92 NHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
N L+S Y + +A +F L S+N +L G+ + AR FD+M RDVV
Sbjct: 192 NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVV 251
Query: 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQV 211
SWNT+I GYA+SG ++E + + S + F++ +++ ++ ++ R++ ++
Sbjct: 252 SWNTIITGYAQSGKIDEARQLFDE----SPVQDVFTWTAMVSGYIQNRMVEEARELFDKM 307
Query: 212 LVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESAS 271
N V ++++ Y + + A+ LFD R+V TW TM++GYA+ G + A
Sbjct: 308 PER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAK 363
Query: 272 KLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331
LF++MP+++PVSW +IAGY+++G +AL LF +M R N+ +FSS L CA +V
Sbjct: 364 NLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVV 423
Query: 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391
+L+ GKQ+HG L++ + + V ++L+ MY KCG + + +F K+ + WNTMI
Sbjct: 424 ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD-IVSWNTMI 482
Query: 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451
+ ++HG+ E A+R F M R +KPD T+ +L+AC+H+GLV +G YF +MT D G+
Sbjct: 483 AGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGV 542
Query: 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511
+PN +H+AC+++LL +AG + N ++ MP+E D+ +W L G R+HGN ++ D
Sbjct: 543 MPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAAD 602
Query: 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFS 571
++ P++S + LLS++Y++ G+ V K+R + ++ KK SWIEI+NK H FS
Sbjct: 603 KIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFS 662
Query: 572 VSDSLHPMRDVLYSVLEQL 590
V D HP +D +++ LE+L
Sbjct: 663 VGDEFHPEKDEIFAFLEEL 681
|
|
| TAIR|locus:2198546 AT1G20230 "AT1G20230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 184/612 (30%), Positives = 333/612 (54%)
Query: 5 FSPRGINRKNLPNNCLIQSFLSLI---SKGQL-SEAISSLDLLAQRGIRLPAETLAFILQ 60
F+ + +++P+ I SF SLI +K +L +++I + G+ + L + +
Sbjct: 66 FNDADLVLQSIPDPT-IYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFK 124
Query: 61 QCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLF 120
CAE + K+GK++H + F+ + MY +CG DARKVFD++ K++
Sbjct: 125 VCAELSAFKVGKQIHC-VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVV 183
Query: 121 SYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176
+ + +L YA G ++ + M E ++VSWN ++ G+ +SG +E + ++ +
Sbjct: 184 TCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243
Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
++ + + +L E L + R +HG V+ G L + + S+++D Y K G +
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303
Query: 237 SDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGY 292
LF++ + + ++G ++ G ++ A ++F E+ N VSWT++IAG
Sbjct: 304 YGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363
Query: 293 TRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT 352
+NG +ALELF M + ++PN T S L AC +I +L HG+ HGF +R + N
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423
Query: 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412
V S+LIDMY+KCG +N + VF++ K N + WN++++ + HG ++ + +F ++R
Sbjct: 424 HVGSALIDMYAKCGRINLSQIVFNMMPTK-NLVCWNSLMNGFSMHGKAKEVMSIFESLMR 482
Query: 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472
+ +KPD I+ +L+AC GL EG YF+ M+ + GI P EH++C++ LL +AG
Sbjct: 483 TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQ 542
Query: 473 QLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532
+ + +++MP+E DS +W AL CR+ N+D+ ++L P++ T+ LLS+IY+
Sbjct: 543 EAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYA 602
Query: 533 ALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAG 592
A G V+ +R + KK SWI+++N+V+ D HP D + +++++
Sbjct: 603 AKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISK 662
Query: 593 QMGEDA--PSLD 602
+M + P+LD
Sbjct: 663 EMRKSGHRPNLD 674
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 162/474 (34%), Positives = 283/474 (59%)
Query: 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177
++F N+++ Y + G + A +F + E+DVVSWN+MI G+ + G+ ++ L+ +K +
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS 237
+ + + G+L+ C K+ L+ RQV + N+ ++++++D Y KCG +
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 238 DARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGL 297
DA+RLFD + +D +TWTTM+ GYA D E+A ++ N MP+K+ V+W LI+ Y +NG
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344
Query: 298 GQKALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS 356
+AL +F + + + ++ NQ T S L ACA + +L+ G+ +H ++ + R N V S
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTS 404
Query: 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416
+LI MYSKCG L R+VF+ + K + +W+ MI L HG +A+ +F+ M ++VK
Sbjct: 405 ALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVK 463
Query: 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMN 476
P+ +T + AC+H+GLV E + F M + GI+P ++H+AC++++L ++G ++ +
Sbjct: 464 PNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVK 523
Query: 477 QLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
+E MP + +W AL G C+IH N+++ +L++ P++ H LLS+IY+ LGK
Sbjct: 524 FIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGK 583
Query: 537 GRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQL 590
V ++R+ + KKE S IEI+ +H F D+ HPM + +Y L ++
Sbjct: 584 WENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEV 637
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 2.4e-86, Sum P(2) = 2.4e-86
Identities = 120/339 (35%), Positives = 201/339 (59%)
Query: 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
++ YAK G M A ++F + +++ VSW ++I ++ A+++F +M + I +
Sbjct: 482 VIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYD 541
Query: 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376
+ S+ L ACA++ S GK +HGF+I+ + S+ S+LIDMY+KCG L VF
Sbjct: 542 CVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFK 601
Query: 377 LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLV 435
T ++N + WN++I+A HG + ++ LFH+MV +S ++PD+IT I+++C H G V
Sbjct: 602 -TMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDV 660
Query: 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHG 495
EG+ +F SMT D GI P QEH+AC+++L +AG + ++ MP+ D+ +W L G
Sbjct: 661 DEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLG 720
Query: 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555
CR+H N+++ +L+D +P +S + L+S+ ++ + V KVR L+ ER+ +K
Sbjct: 721 ACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKI 780
Query: 556 QAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQM 594
SWIEI + H F D HP +YS+L L G++
Sbjct: 781 PGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGEL 819
|
|
| TAIR|locus:2025242 AT1G77010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 177/545 (32%), Positives = 308/545 (56%)
Query: 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLH 77
N L+ + I G EA L L + A TL +L+ CAE ++LK GK++H
Sbjct: 159 NSLLHGY---ILNGYAEEA---LRLFKELNFSADAITLTTVLKACAELEALKCGKQIHAQ 212
Query: 78 LKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKH 137
+ + + + +++ L+++Y KCG A + ++I + S + ++SGYAN G +
Sbjct: 213 ILIGGVECDSK-MNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNE 271
Query: 138 ARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197
+R LFD + R V+ WN+MI GY + E L + +R + + + A ++ C+
Sbjct: 272 SRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETREDSR-TLAAVINACIG 330
Query: 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTM 257
L L+ +Q+H G + ++V++S+++D Y+KCG +A +LF E ++ D + +M
Sbjct: 331 LGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSM 390
Query: 258 VSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317
+ Y G ++ A ++F + K+ +SW ++ G+++NG + LE F +M L + ++
Sbjct: 391 IKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDE 450
Query: 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377
+ SS + ACASI SL+ G+QV S+ +V SSLID+Y KCG + GR+VFD
Sbjct: 451 VSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFD- 509
Query: 378 TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437
T K + + WN+MIS +G +AI LF M + ++P +IT V+L AC + GLV+E
Sbjct: 510 TMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEE 569
Query: 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVC 497
G FESM D G +P++EH +C+++LLA+AG ++ +N +E+MP++ D +W+++ C
Sbjct: 570 GRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSILRGC 629
Query: 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQA 557
+G MG+K +++I+ P++S + LS+I++ G VR+L+ E K
Sbjct: 630 VANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTKNPG 689
Query: 558 ISWIE 562
SW +
Sbjct: 690 SSWTD 694
|
|
| TAIR|locus:2027589 PGN "AT1G56570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 602 (217.0 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
Identities = 123/346 (35%), Positives = 203/346 (58%)
Query: 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320
Y + G + A F+EM +K+ ++W TLI+ R+ +AL +F R PN +TF
Sbjct: 258 YCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSD-SSEALLMFQRFESQGFVPNCYTF 316
Query: 321 SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN 380
+S + ACA+I +L G+Q+HG + R F N + ++LIDMY+KCG + D ++VF +
Sbjct: 317 TSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVD 376
Query: 381 KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
+ N + W +M+ HGY +A+ LF MV S ++PD+I +L+AC H+GLV++GL
Sbjct: 377 RRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLK 436
Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500
YF M + GI P+++ + C+++LL +AG + +E+MP++ D W A+ G C+ H
Sbjct: 437 YFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAH 496
Query: 501 GNIDM-GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559
+ + R ++++ P+ T+ +LS IY+A GK +VR+++ KKE +S
Sbjct: 497 KHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMS 556
Query: 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDA--PSLDA 603
WI +EN+V +F+VSD + P +YSVL L + E P LD+
Sbjct: 557 WILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPELDS 602
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SKQ4 | PP167_ARATH | No assigned EC number | 0.5866 | 0.9586 | 0.9715 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 605 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-101 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-96 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-59 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-57 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 326 bits (836), Expect = e-101
Identities = 148/475 (31%), Positives = 257/475 (54%), Gaps = 34/475 (7%)
Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
N+++ Y +LG A +F M +D VSW MI GY K+G ++ L+ Y ++ + ++
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385
Query: 182 SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARR 241
S +E + A +L+ C L +L + ++H G +S VV+++++++ Y+KC +
Sbjct: 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC------KC 439
Query: 242 LFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301
+ + A ++F+ +PEK+ +SWT++IAG N +A
Sbjct: 440 I-------------------------DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474
Query: 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361
L +F R M+L ++PN T + L ACA I +L GK++H ++RT + + ++L+D+
Sbjct: 475 L-IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533
Query: 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421
Y +CG +N F+ ++++ + WN +++ HG A+ LF+ MV S V PD++T
Sbjct: 534 YVRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT 591
Query: 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481
+L AC+ SG+V +GL YF SM I PN +H+AC+++LL +AG + N + KM
Sbjct: 592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
Query: 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541
P D +W AL CRIH ++++G + + +P S + LL ++Y+ GK V
Sbjct: 652 PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVA 711
Query: 542 KVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596
+VR+ + E + SW+E++ KVHAF D HP + +VLE +M
Sbjct: 712 RVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 308 bits (790), Expect = 6e-96
Identities = 163/565 (28%), Positives = 280/565 (49%), Gaps = 65/565 (11%)
Query: 27 LISKGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKT 85
L++ G+ EA+ ++L LPA T +++ C KS++ K V+ H+ +
Sbjct: 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFE 155
Query: 86 PTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNM 145
P ++ N ++ M+ KCG +DAR++FD++P +NL S+ ++ G + G + A LF M
Sbjct: 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 146 AERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTR 205
W E+G +F +L L + +
Sbjct: 216 -------W-------------EDG-----------SDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265
Q+H VL TG + + +S +++D Y+KCG++ DAR +FD
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG-------------------- 284
Query: 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLC 325
MPEK V+W +++AGY +G ++AL L+ M + +Q TFS +
Sbjct: 285 -----------MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385
+ + L+H KQ H LIRT F + + ++L+D+YSK G + D R VFD K N +
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLI 392
Query: 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445
WN +I+ HG +A+ +F M+ V P+ +T +L+AC +SGL ++G F+SM
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452
Query: 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDM 505
+ + I P H+AC+IELL + G D+ + + P++ +W AL CRIH N+++
Sbjct: 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512
Query: 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIEN 565
GR ++L P+ + +L ++Y++ G+ KV + + + A +WIE++
Sbjct: 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572
Query: 566 KVHAFSVSDSLHPMRDVLYSVLEQL 590
+ H+F D LHP +Y L++L
Sbjct: 573 QDHSFFSGDRLHPQSREIYQKLDEL 597
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 8e-59
Identities = 135/497 (27%), Positives = 219/497 (44%), Gaps = 84/497 (16%)
Query: 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90
G EA+ + G+R T +L+ C L G+ VH H+ + +
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 91 SNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
N LI+MY KCG V AR VFD++P RD
Sbjct: 226 -NALITMYVKCGDVVSARLVFDRMPR-------------------------------RDC 253
Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQ 210
+SWN MI GY ++G EGL+ + +R S+ + + +++ C L + +L R++HG
Sbjct: 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313
Query: 211 VLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESA 270
V+ TGF +V + +S++ Y G +A ++F + +D ++WT M+SGY K
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEK------- 366
Query: 271 SKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330
NGL KALE + M + P++ T +S L ACA +
Sbjct: 367 ------------------------NGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTM 390
L G ++H R S +V ++LI+MYSKC C++ +VF K + + W ++
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSI 461
Query: 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL- 449
I+ L + +A+ F M+ ++KP+ +TL L+AC G + G E H L
Sbjct: 462 IAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGK---EIHAHVLR 517
Query: 450 ------GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNI 503
G +PN L++L + G + NQ +E D WN L HG
Sbjct: 518 TGIGFDGFLPN-----ALLDLYVRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKG 570
Query: 504 DMGRKVVDQLI--DQNP 518
M ++ ++++ NP
Sbjct: 571 SMAVELFNRMVESGVNP 587
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 4e-57
Identities = 124/480 (25%), Positives = 222/480 (46%), Gaps = 88/480 (18%)
Query: 25 LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFI--LQQCAESKSLKLGKRVHLHLKLTQ 82
+L S GQL +A+ L+ + + +R+P + A++ + C ++++ G RV L+
Sbjct: 59 RALCSHGQLEQALKLLESMQE--LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA-LSS 115
Query: 83 RKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLF 142
+ L N ++SM+ + G V A VF K
Sbjct: 116 HPSLGVRLGNAMLSMFVRFGELVHAWYVFGK----------------------------- 146
Query: 143 DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202
M ERD+ SWN ++ GYAK+G +E L Y + + + ++F +L C + +L
Sbjct: 147 --MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204
Query: 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262
R+VH V+ GF +V + ++++ Y KC
Sbjct: 205 RGREVHAHVVRFGFELDVDVVNALITMYVKC----------------------------- 235
Query: 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSS 322
GD+ SA +F+ MP ++ +SW +I+GY NG + LELF M L + P+ T +S
Sbjct: 236 --GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 323 CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382
+ AC + + G+++HG++++T F + V +SLI MY G + +VF + K+
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKD 353
Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442
++ W MIS ++G ++A+ + M + +V PD+IT+A +L+AC G + G+
Sbjct: 354 -AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV--- 409
Query: 443 ESMTHDLG---------IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL 493
H+L ++ N LIE+ ++ C D+ + +P E D W ++
Sbjct: 410 --KLHELAERKGLISYVVVANA-----LIEMYSKCKCIDKALEVFHNIP-EKDVISWTSI 461
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 7e-10
Identities = 66/342 (19%), Positives = 153/342 (44%), Gaps = 30/342 (8%)
Query: 122 YNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAK-------SGAVEEGLKFYK 174
YN +L G +K +L ++M +R ++ I +AK AV+E +F K
Sbjct: 377 YNRLLRD----GRIKDCIDLLEDMEKRGLLD--MDKIYHAKFFKACKKQRAVKEAFRFAK 430
Query: 175 VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG 234
++R ++S +F ++++C +++ +V V G ++ + ++++ AK G
Sbjct: 431 LIRNPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 235 ELSDARRLFDETDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPEKN--P--VSWT 286
++ +F E +V T+ ++ G A+ G + A + M KN P V +
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 287 TLIAGYTRNGLGQKALELFTRMM--ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344
LI+ ++G +A ++ M I P+ T + + ACA+ + K+V+ +
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606
Query: 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVF-DLT--DNKENSMLWNTMISALTQHGYDE 401
N + V + ++ S+ G + ++ D+ K + + ++ ++ G +
Sbjct: 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666
Query: 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443
+A + D + +K ++ + ++ AC+++ ++ L +E
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 12/47 (25%), Positives = 30/47 (63%)
Query: 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC 429
+ + +NT+I + G E+A++LF++M + +KP+ T +++++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGY 292
DV+T+ T++ GY K G +E A KLFNEM ++ N +++ LI G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 117 KNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYAK 162
++ +YN ++ GY G ++ A LF+ M +R +V +++ +I G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 6e-08
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA 328
+ V++ TLI GY + G ++AL+LF M I+PN +T+S +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 88/435 (20%), Positives = 165/435 (37%), Gaps = 93/435 (21%)
Query: 54 TLAFILQQCAESKSLKLGKRVHLHLKLTQRK--TPTTFLSNHLISMYFKCGSDVDAR-KV 110
T ++ CA S+ + RV L+L Q L LIS K G VDA +V
Sbjct: 439 TFNMLMSVCASSQDIDGALRV---LRLVQEAGLKADCKLYTTLISTCAKSGK-VDAMFEV 494
Query: 111 FDKIPVK----NLFSYNNMLSGYANLGMMKHARNLFDNMAERDV----VSWNTMIIGYAK 162
F ++ N+ ++ ++ G A G + A + M ++V V +N +I +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 163 SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI 222
SGAV+ R F + L E+K + +
Sbjct: 555 SGAVD---------RAFDV----------------LAEMKAE--------THPIDPDHIT 581
Query: 223 SSSIVDAYAKCGELSDARRLFDETDARDV----LTWTTMVSGYAKLGDMESASKLFNEMP 278
+++ A A G++ A+ ++ ++ +T V+ ++ GD + A ++++M
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 279 EK----NPVSWTTLI--AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332
+K + V ++ L+ AG+ G KA E+ I+ ++SS + AC++ +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS 392
K +++ + R M++LI L +G Q+
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALIT------ALCEGNQL------------------ 735
Query: 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGII 452
+A+ + +M R + P+ IT +++L A GL D GI
Sbjct: 736 --------PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIK 786
Query: 453 PNQEHHACLIELLAQ 467
PN C+ L +
Sbjct: 787 PNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKN 281
T+ +++SGY K G +E A +LF EM EK
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 4e-06
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF 188
DVV++NT+I GY K G VEE LK + +++ I N +++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 250 DVLTWTTMVSGYAKLGDMESASKLFNEMP 278
DV+T+ T++ G + G ++ A +L +EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418
+ +NT+I L + G E+A+ LF +M ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 219 NVVISSSIVDAYAKCGELSDARRLFDETDAR----DVLTWTTMVSGYAK 263
+VV ++++D Y K G++ +A +LF+E R +V T++ ++ G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMM 309
V++ +LI+GY + G ++ALELF M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 253 TWTTMVSGYAKLGDMESASKLFNEMPEKN 281
T+ T++ G K G +E A +LF EM E+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN 316
V++ TLI G + G ++ALELF M I P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDV 150
+YN+++SGY G ++ A LF M E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181
V++N++I GY K+G +EE L+ +K ++ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 387 WNTMISALTQHGYDEQAIRLFHDMVRSSV 415
+N++IS + G E+A+ LF +M V
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVV 151
+YN ++ G G ++ A LF M ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.69 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.67 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.59 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.43 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.37 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.35 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.23 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.22 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.2 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.2 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.02 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.02 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.96 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.82 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.81 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.81 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.81 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.78 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.71 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.61 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.58 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.55 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.52 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.49 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.37 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.35 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.33 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.19 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.19 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.12 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.12 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.11 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.1 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.1 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.09 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.03 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.02 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.01 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.01 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.0 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.99 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.97 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.86 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.85 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.84 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.83 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.79 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.78 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.78 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.72 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.69 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.68 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.62 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.6 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.57 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.54 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.52 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.51 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.5 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.48 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.45 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.43 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.39 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.38 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.36 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.33 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.32 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.31 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.31 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.31 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.25 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.21 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.17 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.16 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.16 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.16 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.14 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.12 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.04 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.0 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.85 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.82 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.82 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.82 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.82 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.71 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.62 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.58 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.55 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.55 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.51 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.51 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.49 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.41 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.33 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.32 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.28 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.19 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.19 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.17 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.14 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.02 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.95 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.94 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.87 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.68 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.49 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.44 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.43 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.41 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.36 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.33 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.27 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.2 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.2 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.19 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.12 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.03 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.01 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.9 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.89 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.77 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 94.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.54 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.51 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 94.5 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.48 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.47 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.33 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.29 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.27 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.25 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.97 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.96 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.93 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.75 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.47 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.43 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.31 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.26 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.1 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.09 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.79 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.78 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.76 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 92.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.42 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.32 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.98 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.96 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.9 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.68 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.68 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.61 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.59 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.53 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.45 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.33 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.3 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.2 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 91.19 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.93 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.89 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.87 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 90.48 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.03 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.9 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.88 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.86 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 89.79 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.78 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.77 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.74 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 89.47 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.21 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 89.2 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.9 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.85 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.11 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 87.83 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.76 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.34 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.05 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.93 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.73 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 86.7 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.64 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.57 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.34 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.79 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.69 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.41 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 85.39 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 85.36 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 85.32 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.05 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.69 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.46 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.17 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.0 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 83.2 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 83.02 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 82.61 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.56 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 82.15 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.14 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 81.59 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.23 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.88 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 80.74 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 80.74 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.73 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.52 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 80.24 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-83 Score=691.89 Aligned_cols=588 Identities=28% Similarity=0.505 Sum_probs=531.3
Q ss_pred CCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchh
Q 007400 10 INRKNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTF 89 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 89 (605)
..|+..+|+.++.+ +.+.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|..++..
T Consensus 148 ~~~d~~~~n~li~~---~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 223 (857)
T PLN03077 148 PERDLFSWNVLVGG---YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD- 223 (857)
T ss_pred CCCCeeEHHHHHHH---HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc-
Confidence 45788888887775 56789999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCceeHHHHHHHHHhcCC
Q 007400 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGA 165 (605)
Q Consensus 90 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~ 165 (605)
++++++.+|+++|++++|..+|++|..+|..+||++|.+|++.|++++|.++|++|. .||..||+.++.+|++.|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999995 3677777777777766666
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh-------------------------------HHHHHHHHHHHHh
Q 007400 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL-------------------------------KLTRQVHGQVLVT 214 (605)
Q Consensus 166 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-------------------------------~~a~~~~~~~~~~ 214 (605)
.+.+.+++..|.+.|+.||..+|+.++.+|++.|++ ++|.++|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 666666666666666666665555555555555554 4555555555555
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHH
Q 007400 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIA 290 (605)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 290 (605)
|+.||..+|+.++.+|++.|+++.|.++++.+.+ ++..+++.++.+|++.|++++|.++|++|.++|..+|+.++.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 5555555555555555555555555555555543 256678889999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007400 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370 (605)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (605)
+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~ 542 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence 99999999999999999986 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhC
Q 007400 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450 (605)
Q Consensus 371 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 450 (605)
|.++|+.+ .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.++.|
T Consensus 543 A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 543 AWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 99999999 5699999999999999999999999999999999999999999999999999999999999999997789
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 451 IIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
+.|+..+|++++++|.+.|++++|.+++++|+.+||..+|.+|+.+|..+|+.+.++...+++++++|++...|..|+++
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q 007400 531 YSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604 (605)
Q Consensus 531 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 604 (605)
|...|+|++|.++++.|.+.|++|.|++||+++.+.+|.|..+|.+||+.++|+.+|+++..+|++.||+||++
T Consensus 701 ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999964
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-76 Score=621.13 Aligned_cols=524 Identities=29% Similarity=0.513 Sum_probs=499.4
Q ss_pred CCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC----CCCchHHHH
Q 007400 49 RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP----VKNLFSYNN 124 (605)
Q Consensus 49 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 124 (605)
..+..+++.++..+.+.|++++|.++|+.|...++..++..+|+.++.+|++.++++.+..++..|. .||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456689999999999999999999999998776444444499999999999999999999998886 478899999
Q ss_pred HHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 007400 125 MLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204 (605)
Q Consensus 125 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 204 (605)
++..|++.|++++|.++|++|.+||..+|+.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|.+.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhh
Q 007400 205 RQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS 284 (605)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 284 (605)
.+++..+.+.|+.||..+++.|+.+|+++|++++|. ++|++|.++|+.+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~-------------------------------~vf~~m~~~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR-------------------------------CVFDGMPEKTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH-------------------------------HHHHhCCCCChhH
Confidence 999999999999999999999999999999888888 6666666778889
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|++++..+++.|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007400 365 CGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 444 (605)
+|++++|.++|+.|..+ |..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.
T Consensus 373 ~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 373 WGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred CCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999876 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 445 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
|.++.++.|+..+|+.++++|++.|++++|.+++++++..|+..+|+.++.+|..+|+++.|..+++++++..|++..+|
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 98778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q 007400 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDAD 604 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 604 (605)
..|+.+|.+.|+|++|.++++.|.+.|+++.|++||+++.+.+|.|..+|..||..++++++|.++..+|++.||+||++
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999974
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-68 Score=571.27 Aligned_cols=520 Identities=26% Similarity=0.402 Sum_probs=489.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
.+++.|++++|..+|+.|.+.|++|+..+|..++++|...+..+.+.+++..+.+.+..++.. .+++++..|++.|+++
T Consensus 60 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~n~li~~~~~~g~~~ 138 (857)
T PLN03077 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR-LGNAMLSMFVRFGELV 138 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHhCCChH
Confidence 788899999999999999999999999999999999999999999999999999999887776 9999999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCc-------------------------------
Q 007400 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDV------------------------------- 150 (605)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~------------------------------- 150 (605)
.|.++|++|.++|..+|+.+|.+|++.|++++|.++|++|. .||.
T Consensus 139 ~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred HHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999985 2544
Q ss_pred ----eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007400 151 ----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226 (605)
Q Consensus 151 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (605)
.+|+.||.+|++.|+++.|.++|+.|.+ ||..+|+++|.+|++.|++++|.++|.+|.+.|+.||..+|+.+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 4556777777888888888888888864 78888999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHH
Q 007400 227 VDAYAKCGELSDARRLFDETDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 302 (605)
+.++++.|+.+.+.+++..+.. +|..+|+.++.+|++.|++++|.++|++|..+|..+||.++.+|.+.|++++|+
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~ 374 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL 374 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999988865 488999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 007400 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE 382 (605)
Q Consensus 303 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 382 (605)
++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+++|++.|++++|.++|+.|..+
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~- 453 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK- 453 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 462 (605)
|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+. +.|+.++..+++.|+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi 531 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALL 531 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHH
Confidence 999999999999999999999999999986 599999999999999999999999999999999 669999999999999
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
++|.++|++++|.++|+++ ++|..+|+.++.+|.++|+.++|.++|++|.+. .| |..+|..++.+|.+.|++++|
T Consensus 532 ~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHH
Confidence 9999999999999999998 699999999999999999999999999999986 67 889999999999999999999
Q ss_pred HHHHHHHH-hCCCcCCC
Q 007400 541 EKVRQLIN-ERQFKKEQ 556 (605)
Q Consensus 541 ~~~~~~~~-~~~~~~~~ 556 (605)
.++|+.|. +.|+.|..
T Consensus 609 ~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 609 LEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHhCCCCch
Confidence 99999998 67877654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=524.89 Aligned_cols=506 Identities=14% Similarity=0.185 Sum_probs=469.5
Q ss_pred CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHH
Q 007400 48 IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLS 127 (605)
Q Consensus 48 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 127 (605)
..++...|..++..|++.|++++|.++++.|.+.+..++....++.++..|.+.|.+++|..+|+.|..|+..+|+.++.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34677889999999999999999999999999999877666578889999999999999999999999999999999999
Q ss_pred HHHccCChHHHHHHHhhcC----CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHH
Q 007400 128 GYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKL 203 (605)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 203 (605)
+|++.|+++.|.++|+.|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999997 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC------CCCcchHHHHHHHHHhcCChHHHHHHHhhC
Q 007400 204 TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD------ARDVLTWTTMVSGYAKLGDMESASKLFNEM 277 (605)
Q Consensus 204 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 277 (605)
|.++|+.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 358899999999999999999999999999
Q ss_pred CC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChh
Q 007400 278 PE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI 353 (605)
Q Consensus 278 ~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 353 (605)
.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 75 57799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC---CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDN---KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 430 (605)
+|+.|+.+|++.|++++|.++|+.|.. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999998863 58999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----c-------------------CChHHHHHHHHhC---CCC
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----A-------------------GCSDQLMNQLEKM---PYE 484 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~ 484 (605)
+.|+++.|..++.+|. +.|+.||..+|+.++..+.+ + +..++|..+|++| +..
T Consensus 766 k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999 66999999999999876432 2 2246789999988 478
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCc-hHHHHHHHHHHhCCCcCCCc
Q 007400 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-NPQSSATHGLLSSIYSALGKG-RLVEKVRQLINERQFKKEQA 557 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ 557 (605)
||..+|..++.++...+..+.+..+++.+... .+.+..+|..+++.+ |++ ++|..++++|...|+.|...
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcc
Confidence 99999999998877888899888888876544 455788999999987 443 58999999999999987764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-62 Score=511.99 Aligned_cols=494 Identities=16% Similarity=0.245 Sum_probs=454.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 007400 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGI-RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLIS 96 (605)
Q Consensus 18 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (605)
...+..+..+++.|++++|+++|+.|.+.|+ .++..++..++.+|.+.|..++|..++..|.. ++.. +|+.++.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~-Tyn~LL~ 445 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS-TFNMLMS 445 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH-HHHHHHH
Confidence 3445555577789999999999999999995 46777888899999999999999999887753 5555 9999999
Q ss_pred HHHhcCChhHHHHHhccCC----CCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCceeHHHHHHHHHhcCChHH
Q 007400 97 MYFKCGSDVDARKVFDKIP----VKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEE 168 (605)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~ 168 (605)
+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999997 4789999999999999999999999999998 4899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 007400 169 GLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLV--TGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246 (605)
Q Consensus 169 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (605)
|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 578999999999999999999999999999999
Q ss_pred CCC----CcchHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH
Q 007400 247 DAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH 318 (605)
Q Consensus 247 ~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 318 (605)
.+. +..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 865 668999999999999999999999999974 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCCcchHHHHHHHHH
Q 007400 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN---KENSMLWNTMISALT 395 (605)
Q Consensus 319 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~ 395 (605)
+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.. .||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998863 489999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c-------------------CcHHHHHHHHHHchHhhCCC
Q 007400 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH----S-------------------GLVQEGLTYFESMTHDLGII 452 (605)
Q Consensus 396 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~ 452 (605)
+.|+.++|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|. +.|+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~-~~Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI-SAGTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH-HCCCC
Confidence 999999999999999999999999999999876532 1 12467999999999 66999
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Q 007400 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMP---YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQ 519 (605)
Q Consensus 453 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 519 (605)
||..+|+.++.++.+.+..+.+..+++.+. ..|+..+|+.++.++.+. .++|..++++|.+. .|+
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999884 557789999999988432 46899999999987 553
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=471.64 Aligned_cols=442 Identities=21% Similarity=0.336 Sum_probs=381.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCh
Q 007400 26 SLISKGQLSEAISSLDLLAQRG-IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 104 (605)
.+.+.|++++|+++|+.|...+ +.|+..+|+.++.+|.+.++.+.+.+++..+.+.|..++.. +|+.++.+|++.|++
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~-~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY-MMNRVLLMHVKCGML 174 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHhcCCCH
Confidence 6778899999999999998765 78999999999999999999999999999999999988877 999999999999999
Q ss_pred hHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcC----CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007400 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMA----ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFS 180 (605)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 180 (605)
++|.++|++|.+||..+|+++|.+|++.|++++|.++|++|. .||..+|+.++.++++.|..+.+.+++..+.+.|
T Consensus 175 ~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999996 4788888888888888888888888888888888
Q ss_pred CCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC----CCCcchHHH
Q 007400 181 ISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD----ARDVLTWTT 256 (605)
Q Consensus 181 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 256 (605)
+.||..+|+.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|.++|++|. .+|..+|+.
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 88888888888888888888888888888773 4678888888888888888888888888884 357788888
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccc
Q 007400 257 MVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS 332 (605)
Q Consensus 257 li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 332 (605)
++.+|++.|++++|.+++..|.+ +|..+|++|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCC
Confidence 88888888888888888887763 577888888888888888888888888876 4678888888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 007400 333 LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN----KENSMLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 333 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
.++|.++|++|.+.|+.||..+|+.++.+|.+.|..++|.++|+.|.. .|+..+|+.++.+|++.|++++|.++++
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888753 3778888888888888888888888877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 409 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
+| ++.|+..+|+.++.+|...|+++.|..+++++. ++.|+ ..+|..|+..|.+.|++++|.+++++|.
T Consensus 487 ~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 487 RA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 65 467888888888888888888888888888876 66665 6688888888888888888888888773
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=309.34 Aligned_cols=515 Identities=12% Similarity=0.080 Sum_probs=349.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
.+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.+.++.+....+.. ...+..+...+...|+++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 414 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN--AAARTQLGISKLSQGDPS 414 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhCCChH
Confidence 5567788888888888877654 4456677777777888888888888888877665332 225666777777788888
Q ss_pred HHHHHhccCCCC---CchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 106 DARKVFDKIPVK---NLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 106 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
+|...++.+.+. .......++..+.+.|++++|..+++.+.. .+..+|..+...+...|++++|.+.|+++.+.
T Consensus 415 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 415 EAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 888877776532 234555666777777777777777777653 34556777777777777777777777777663
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHH
Q 007400 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTT 256 (605)
Q Consensus 180 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 256 (605)
. +.+...+..+...+...|++++|...++.+....+ .+..++..+...+.+.|+.++|...++++... +...+..
T Consensus 495 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 572 (899)
T TIGR02917 495 E-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALA 572 (899)
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHH
Confidence 2 22344566666777777777777777777776643 35666777777777777777777777766443 3455666
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccch
Q 007400 257 MVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333 (605)
Q Consensus 257 li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 333 (605)
++..+...|++++|..+++.+.. .+...|..++..+...|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 67777777777777777776653 355667777777777777777777777776543 33455566666777777777
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+... .+...+..+...+...|++++|...|+++.
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777776654 445666677777777777777777777766532 244556666667777777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHH
Q 007400 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYL 489 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 489 (605)
.. .|+..++..++.++...|++++|...++++... .+.+...+..++..|...|++++|.+.|+++. .++++.+
T Consensus 731 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 731 KR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred hh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 63 455556666667777777777777777776622 23345666667777777777777777776652 3345666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
+..++..+...|+ ++|+..++++++..|+++..+..++.++...|++++|..+++++.+.+.
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666667766666 6677777777777776766666777777777777777777777666543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=304.87 Aligned_cols=513 Identities=13% Similarity=0.081 Sum_probs=310.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
.+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...+..+....+..+. .+..+...+.+.|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA--ALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHCCCHH
Confidence 4445566666666666666543 334445555556666666666666666666655433222 4556666666666666
Q ss_pred HHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCCC---CceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 106 DARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAER---DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 106 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
+|...|+++.+ .+...+..+...+...|++++|.+.|+.+.+. +......++..+.+.|++++|.++++.+...
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 66666666543 23345555666666666666666666665431 2234445556666666666666666666552
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHH
Q 007400 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTT 256 (605)
Q Consensus 180 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 256 (605)
.+++..++..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.|+++... +..++..
T Consensus 461 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 -QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred -CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 234555666666666666666666666666665432 24445555666666666666666666665432 4455566
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccch
Q 007400 257 MVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSL 333 (605)
Q Consensus 257 li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 333 (605)
+...+.+.|+.++|...++++.. .+...+..++..+...|++++|+.+++.+.+.. +.+...+..+..++...|++
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 66666666666666666666543 234455566666666666666666666665532 44555666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
++|...++.+.+.. +.+...+..+..++.+.|++++|...|+.+.. +.+..++..++..+...|++++|..+++.+.
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666554 34455566666666666666666666665432 1244566666666666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHH
Q 007400 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYL 489 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 489 (605)
+.+ +++...+..+...+...|++++|...|+.+. ...|+..++..++.++.+.|++++|.+.++++. .+.+..+
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 772 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL---KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH---hhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 643 2344556666666666666666666666666 234444555666666666666666666666541 2345556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..++..|...|++++|...|+++++..|+++.++..++.++...|+ ++|+..++++.+.
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666 6666666666543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-25 Score=246.76 Aligned_cols=529 Identities=12% Similarity=0.047 Sum_probs=321.7
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhh---
Q 007400 14 NLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL--- 90 (605)
Q Consensus 14 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--- 90 (605)
+.+-..++....-....++.+.|.+.++++.... +.++..+...+..+...|+.++|.+.++.+.+..+..+....
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~ 103 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT 103 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3345556766667778899999999999998864 456788888889999999999999999999988866544311
Q ss_pred -----------HHHHHHHHHhcCChhHHHHHhccCCCCCchHH----HHHHHHHHccCChHHHHHHHhhcCC--C-Ccee
Q 007400 91 -----------SNHLISMYFKCGSDVDARKVFDKIPVKNLFSY----NNMLSGYANLGMMKHARNLFDNMAE--R-DVVS 152 (605)
Q Consensus 91 -----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~ 152 (605)
...+...+...|++++|...|+++.+.++... ..........|+.++|++.|+++.+ | +...
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~ 183 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGL 183 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHH
Confidence 12334467888999999999999875322111 1111222346899999999999875 3 4556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC----------------CCChh---hHH------------------------
Q 007400 153 WNTMIIGYAKSGAVEEGLKFYKVLRRFSI----------------SCNEF---SFA------------------------ 189 (605)
Q Consensus 153 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------------~p~~~---~~~------------------------ 189 (605)
+..+...+...|++++|++.++++.+... .++.. .+.
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 77888889999999999999998754321 00000 010
Q ss_pred ----------HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc-----hH
Q 007400 190 ----------GILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL-----TW 254 (605)
Q Consensus 190 ----------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~ 254 (605)
.....+...|++++|...+++.++..+ .+..++..+..+|.+.|++++|+..|++..+.++. .|
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 112234456677777777777766543 25566666777777777777777777666543211 11
Q ss_pred H------------HHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 255 T------------TMVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 255 ~------------~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
. .....+.+.|++++|+..|+++.+ .+...+..+...+...|++++|++.|+++.+.. +.+...
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a 421 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA 421 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 1 112345566777777777776654 244456666677777777777777777766642 222334
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-CcchHHH
Q 007400 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFR--------SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE-NSMLWNT 389 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~ 389 (605)
+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++... .| +...+..
T Consensus 422 ~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~ 500 (1157)
T PRK11447 422 VRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYR 500 (1157)
T ss_pred HHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 444444443 34566666666554322100 0112344456667778888888888886542 23 4556777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCC----------------
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGII---------------- 452 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------- 452 (605)
+...|.+.|++++|...++++.+. .| +...+..+...+...++.++|...++.+... ...
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHH
Confidence 778888888888888888888773 45 3444555555566778888888888776411 111
Q ss_pred -----------------------CCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 453 -----------------------PNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 453 -----------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
++...+..+...+.+.|++++|++.|++.. .+.+...+..++.++...|++++|+
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 112233344444444455555554444431 1223444444555555555555555
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.++++++..|++...+..++.++...|++++|.++++.+..
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 555555555554444555555555555555555555554443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-25 Score=243.01 Aligned_cols=508 Identities=11% Similarity=0.050 Sum_probs=382.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAET-LAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 104 (605)
.+...|++++|+..|+.+.+.+ +|+... ...+.......|+.++|.+.++.+++..+..+. .+..+...+...|+.
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~--~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTG--LRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHccCCH
Confidence 4667899999999999998764 444321 111222233468999999999999998765443 677889999999999
Q ss_pred hHHHHHhccCCCCCc-----------------------hHHH----------------------------------HHHH
Q 007400 105 VDARKVFDKIPVKNL-----------------------FSYN----------------------------------NMLS 127 (605)
Q Consensus 105 ~~a~~~~~~~~~~~~-----------------------~~~~----------------------------------~li~ 127 (605)
++|+..++++..... ..+. ....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 999999988642110 0000 1123
Q ss_pred HHHccCChHHHHHHHhhcCC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhH------------HHH
Q 007400 128 GYANLGMMKHARNLFDNMAE--R-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSF------------AGI 191 (605)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~------------~~l 191 (605)
.+...|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..+..... +...+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 45667888999999988764 3 56778888888999999999999999887743221 11111 122
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChH
Q 007400 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDME 268 (605)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 268 (605)
...+.+.|++++|...++++++..+ .+...+..+..++...|++++|++.|++.... +...+..+...+. .++.+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHH
Confidence 3456688899999999999888754 35667777888999999999999999887754 3445556666664 46788
Q ss_pred HHHHHHhhCCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH
Q 007400 269 SASKLFNEMPEKN------------PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336 (605)
Q Consensus 269 ~A~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 336 (605)
+|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888887765321 2235556778889999999999999998853 23455667788889999999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC---Cc---------chHHHHHHHHHHcCCHHHHH
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE---NS---------MLWNTMISALTQHGYDEQAI 404 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~---------~~~~~l~~~~~~~g~~~~a~ 404 (605)
...++.+.+.. +.+...+..+...+...++.++|...++.+.... +. ..+..++..+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 99999998765 4455556666667788999999999999876431 11 11234566788899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 007400 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP- 482 (605)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 482 (605)
.+++. .+++...+..+...+...|++++|+..|+++. ...|+ ...+..++.+|...|++++|++.+++..
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al---~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVL---TREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99871 24456678889999999999999999999998 34555 7889999999999999999999999864
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 483 YE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS------ATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 483 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.. .+...+..++.++...|++++|.+++++++...|+++ ..+..++.++...|++++|+..|+...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23 4566777888899999999999999999999876544 356678999999999999999998885
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-22 Score=214.12 Aligned_cols=503 Identities=10% Similarity=0.016 Sum_probs=360.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
.+...|++++|++.|+...+.. +-+..++..+.+++.+.|+.++|+...++.++..+ .+...+..+ ..+ ++.+
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP--~n~~~~~~L-a~i---~~~~ 125 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP--GDARLERSL-AAI---PVEV 125 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHHHHH-HHh---ccCh
Confidence 4445699999999999999876 44578888899999999999999999999998865 333133333 222 8999
Q ss_pred HHHHHhccCCC--C-CchHHHHHHHH--------HHccCChHHHHHHHhhcCCCC--ceeHHHH-HHHHHhcCChHHHHH
Q 007400 106 DARKVFDKIPV--K-NLFSYNNMLSG--------YANLGMMKHARNLFDNMAERD--VVSWNTM-IIGYAKSGAVEEGLK 171 (605)
Q Consensus 106 ~a~~~~~~~~~--~-~~~~~~~li~~--------~~~~~~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~ 171 (605)
+|..+++++.. | +..++..+... |.+.+...++++ .+...++ ....... ...|.+.|++++|++
T Consensus 126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 99999999974 3 34555555555 666666666665 3333343 4434444 889999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-
Q 007400 172 FYKVLRRFSISCNEFSFAGILTICVK-LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR- 249 (605)
Q Consensus 172 ~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 249 (605)
+++++.+.+. .+..-...+..++.. .++ +.+..+++. .++.+...+..++..|.+.|+.++|.++++++...
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999999764 334445666667776 366 777777543 34467888999999999999999999999887642
Q ss_pred ----CcchHHHH------------------------------HHH-----------------------------------
Q 007400 250 ----DVLTWTTM------------------------------VSG----------------------------------- 260 (605)
Q Consensus 250 ----~~~~~~~l------------------------------i~~----------------------------------- 260 (605)
...+|--. +..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 11111111 111
Q ss_pred ----------------------------HHhcCChHHHHHHHhhCCC-C-----ChhhHHHHHHHHHhCCC---hHHHHH
Q 007400 261 ----------------------------YAKLGDMESASKLFNEMPE-K-----NPVSWTTLIAGYTRNGL---GQKALE 303 (605)
Q Consensus 261 ----------------------------~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~---~~~a~~ 303 (605)
..+.|+.++|.++|+.... + +....+.++..|.+.+. ..+++.
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 3344555566665555443 1 12223345555555544 222222
Q ss_pred H----------------------HHHHHH-CCC-CC--ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHH
Q 007400 304 L----------------------FTRMMI-LRI-RP--NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357 (605)
Q Consensus 304 ~----------------------~~~m~~-~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 357 (605)
+ +..... .+. ++ +...+..+..++.. ++.++|...+....... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 2 111111 111 22 34455555555554 67778888777777654 44433444
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcH
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDNK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLV 435 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~ 435 (605)
+...+...|++++|...|+.+... |+...+..+...+.+.|+.++|...+++.++. .|+. ..+..+.......|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCH
Confidence 455567899999999999976643 45556777788889999999999999999885 3543 3444445555677999
Q ss_pred HHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (605)
++|...+++.. ...|+...+..+..++.+.|++++|+..+++.. .+.+...+..++.++...|++++|++.|+++
T Consensus 593 ~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999998 567788899999999999999999999999862 3456778888999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 514 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++..|+++..+..++.++...|++++|+..+++..+..
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999997654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-24 Score=200.40 Aligned_cols=436 Identities=11% Similarity=0.133 Sum_probs=340.9
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCCc---hHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCC
Q 007400 92 NHLISMYFKCGSDVDARKVFDKIPVKNL---FSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGA 165 (605)
Q Consensus 92 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 165 (605)
..|.+-.-+.|++++|++.-...-+.|+ ...-.+-..+.+..+++....--....+ .-..+|+.+...+-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 3455555566777777665544433221 2222233444555555544333222222 234578888888888888
Q ss_pred hHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHH
Q 007400 166 VEEGLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI-SSSIVDAYAKCGELSDARRLF 243 (605)
Q Consensus 166 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~ 243 (605)
+++|+.+|+.+.+ ++| ....|..+..++...|+.+.|.+.|.+.++.. |+... ...+.......|++.+|...|
T Consensus 132 ~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 8888888888877 334 55678888888888888888888888877654 44333 233445555678888888888
Q ss_pred hhcCCCC---cchHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-
Q 007400 244 DETDARD---VLTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN- 316 (605)
Q Consensus 244 ~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~- 316 (605)
.+....+ ...|+.|...+-.+|+...|+..|++...-| ..+|-.|...|...+.++.|+..|.+.... .|+
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 7766543 3678888888888999999999999887644 347888999999999999999999988774 454
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHH
Q 007400 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISAL 394 (605)
Q Consensus 317 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 394 (605)
...+..+...|..+|.++.|...+++.++.. +.-+..|+.|..++...|+..+|...|..... +....+.+.|...+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4567777788889999999999999999876 55678999999999999999999999987542 22566789999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSD 472 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 472 (605)
...|.+++|..+|....+ +.|.. ..++.|...|-+.|++++|+..|+++. .+.|+ .+.++.+...|...|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999998 78875 489999999999999999999999998 88999 789999999999999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 473 QLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 473 ~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
.|.+.+.+. ...|. ....+.|+..|...|++.+|+..|+.++++.||.+.++-.++.++--..+|.+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999886 44554 66888999999999999999999999999999999999999988877777766
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-20 Score=198.57 Aligned_cols=317 Identities=12% Similarity=0.047 Sum_probs=246.2
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCC---hHHHHHH-----------------------
Q 007400 226 IVDAYAKCGELSDARRLFDETDAR------DVLTWTTMVSGYAKLGD---MESASKL----------------------- 273 (605)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~---~~~A~~~----------------------- 273 (605)
+.-.....|+.++|.++|+..... +......++..|.+.+. ...+..+
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence 334456678899999999887762 12234466777777766 2223222
Q ss_pred --HhhCCC---C--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHc
Q 007400 274 --FNEMPE---K--NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT 346 (605)
Q Consensus 274 --~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 346 (605)
+..... + +...|..+..++.. +++.+|+..+.+.... .|+......+...+...|++++|...++.+...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 111111 2 45677778877776 8999999988887764 467655545556667899999999999997654
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CCc-chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007400 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENS-MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV 424 (605)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (605)
+|+...+..+...+.+.|++++|...|+..... |+. ..+..+.......|++++|...+++.++ +.|+...+..
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~ 614 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVA 614 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 344455667788899999999999999876643 222 2233333344456999999999999998 5788889999
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
+..++.+.|++++|...++++. ...|+ ...+..+..++...|++++|++.+++.. .+.+...+..++.++...|
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999998 55676 7788999999999999999999999862 3456888999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
++++|+..|++++++.|++..+....+++..+..+++.|.+.++......+
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999999999999999999999998887755443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-22 Score=189.90 Aligned_cols=421 Identities=13% Similarity=0.131 Sum_probs=350.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCCCCc---eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMAERDV---VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 198 (605)
...+..-..+.|++.+|++.-...-..|. ...-.+-..+.+..+.+....--....+ ..+.-..+|..+.+.+...
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHh
Confidence 44566777889999999988776654322 2222223445555566665544333333 2334667999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcch---HHHHHHHHHhcCChHHHHHHHh
Q 007400 199 EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLT---WTTMVSGYAKLGDMESASKLFN 275 (605)
Q Consensus 199 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~ 275 (605)
|++++|...++.+++..+. ....|..+..++...|+.+.|.+.|.+..+-|+.. .+.+...+...|++++|...+.
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999999987644 67889999999999999999999999888766533 3445566777899999999998
Q ss_pred hCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCC
Q 007400 276 EMPEKN---PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ-HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN 351 (605)
Q Consensus 276 ~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 351 (605)
+..+.+ .++|+.|...+..+|+...|+..|++..+. .|+. ..|..|...|...+.++.|...+.++.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 876532 457999999999999999999999999874 5654 478888888999999999999999888765 556
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCC-cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KEN-SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNA 428 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 428 (605)
..++..+...|...|.++.|+..|++... .|+ ...|+.|..++-..|++.+|+..|.+.+. +.|+ ..+.+.|..+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 67888899999999999999999997654 344 56899999999999999999999999999 5676 4699999999
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~ 505 (605)
+...|.++.|..+|.... .+.|. ...++.|...|.++|++++|+..+++. .++|+ ...++.++..|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999988 67787 678999999999999999999999886 46666 6689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
|...|.+++..+|.-+.++..|+.+|...|+..+|+.-++..+....
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999876543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-20 Score=192.22 Aligned_cols=419 Identities=11% Similarity=0.017 Sum_probs=296.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHhhcCC--CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHhc
Q 007400 121 SYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC-NEFSFAGILTICVK 197 (605)
Q Consensus 121 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 197 (605)
.+......+.+.|++++|+..|++..+ |+...|..+..+|.+.|++++|++.++...+. .| +...+..+..++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 355667778888899999999988763 67777888888888889999999988888873 34 44577778888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhC
Q 007400 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEM 277 (605)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 277 (605)
.|++++|...+..+...+...+.. ...++..+........+...++.-. .+...+..+...+ .....+....-+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchhhhhcc
Confidence 899988888877665543222222 1222222222111233333333221 2233333333222 211122221112211
Q ss_pred CCCCh---hhHHHHHHH---HHhCCChHHHHHHHHHHHHCC-CCC-ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 007400 278 PEKNP---VSWTTLIAG---YTRNGLGQKALELFTRMMILR-IRP-NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR 349 (605)
Q Consensus 278 ~~~~~---~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 349 (605)
.+.+. ..+..+... ....+++++|++.|++....+ ..| ....+..+...+...|++++|...++..++.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 11111 111111111 123478999999999999865 234 34567777788889999999999999999875 4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 007400 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVIL 426 (605)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~ 426 (605)
.....|..+..++...|++++|...|+.... +.+...|..+...+...|++++|+..|++.++ +.|+ ...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHH
Confidence 4566888899999999999999999997542 23577899999999999999999999999998 4564 56788888
Q ss_pred HHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HH-------HHHHHHHH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD-SY-------LWNALHGV 496 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~-------~~~~l~~~ 496 (605)
.++.+.|++++|+..|++.. ...|+ ...+..+..++...|++++|++.|++. ...|+ .. .++..+..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCK---KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 99999999999999999998 33454 778999999999999999999999885 22232 11 11222223
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+...|++++|..+++++++++|++..++..++.++.+.|++++|+..|++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344699999999999999999999999999999999999999999999988654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-20 Score=180.98 Aligned_cols=514 Identities=12% Similarity=0.071 Sum_probs=329.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC---Chh
Q 007400 29 SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG---SDV 105 (605)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~ 105 (605)
..+++..|+.+|.........--+.....+..++.+.++.+.|+..|...++..| ....++-.|...-.... .+.
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp--~~v~alv~L~~~~l~~~d~~s~~ 253 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP--TCVSALVALGEVDLNFNDSDSYK 253 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHccchHHHH
Confidence 4567777777777654432111112222333455566677777777666666554 11112222222222222 233
Q ss_pred HHHHHhccCC---CCCchHHHHHHHHHHccCChHHHHHHHhhcCCCC------ceeHHHHHHHHHhcCChHHHHHHHHHH
Q 007400 106 DARKVFDKIP---VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERD------VVSWNTMIIGYAKSGAVEEGLKFYKVL 176 (605)
Q Consensus 106 ~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m 176 (605)
.+..++...- ..|+.+.+.|.+.|.-.|+++.++.+...+...+ ..+|..+.++|-..|++++|...|.+.
T Consensus 254 ~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 254 KGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444444332 2466777777777777777777777776665321 245667777777778888887777766
Q ss_pred HhCCCCCChh--hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----ChHHHHHHHhhcCCC-
Q 007400 177 RRFSISCNEF--SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCG----ELSDARRLFDETDAR- 249 (605)
Q Consensus 177 ~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~- 249 (605)
.+. .|+.+ .+..+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+...+
T Consensus 334 ~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 334 LKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred Hcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 653 34433 34456667777778888887777777764 235566666666666654 456666666666654
Q ss_pred --CcchHHHHHHHHHhcCCh------HHHHHHHhhCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCh
Q 007400 250 --DVLTWTTMVSGYAKLGDM------ESASKLFNEMP-EKNPVSWTTLIAGYTRNGLGQKALELFTRMMIL---RIRPNQ 317 (605)
Q Consensus 250 --~~~~~~~li~~~~~~~~~------~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---g~~p~~ 317 (605)
|...|-.+...+-...-+ ..|..++..-. ...+...|.+...+...|++..|...|...... ...++.
T Consensus 411 ~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 344555554444433322 23333333222 245667788888888888888888888877654 122222
Q ss_pred ------HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHH
Q 007400 318 ------HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNT 389 (605)
Q Consensus 318 ------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~ 389 (605)
.+--.+....-..++.+.|.+.|..+.+.. +.-+..|..++.+....++..+|...+..+.. ..++..+..
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 222334455566678888888888887764 33444555555444455677788887776542 236666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHchHhhCCCC-CH
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTH------------SGLVQEGLTYFESMTHDLGIIP-NQ 455 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~p-~~ 455 (605)
+...+.....+..|.+-|....+.- ..+|..+...|.+.|.. .+..+.|+++|.++. ...| |.
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpkN~ 646 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPKNM 646 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcchh
Confidence 7778888888888888666655432 23567777777765542 334677888888887 3344 47
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHH
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIY 531 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~ 531 (605)
..-+.++-+++..|++.+|.++|.+.. ......+|-.++.+|..+|+|-.|+++|+..++. .-++..+...|+.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 778889999999999999999998874 2235578889999999999999999999999987 445677888999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 007400 532 SALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~~~ 551 (605)
.+.|++.+|.+.........
T Consensus 727 y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhC
Confidence 99999999999888776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-19 Score=175.98 Aligned_cols=514 Identities=10% Similarity=0.069 Sum_probs=387.0
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHhh--hcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 007400 33 LSEAISSLDLLAQRGIRLPAETLAFILQQCA--ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110 (605)
Q Consensus 33 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 110 (605)
.+.|...|....+.. +++ ....+.++|. ..+++..|..+|..++...+..... ..-.+..++.+.|+.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD-~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD-VRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC-ccchhhhHHHhccchhhHHHH
Confidence 588999999888764 334 4455556654 5789999999999988887766555 556677888999999999999
Q ss_pred hccCCCCCchHHHHHHHHH------HccCChHHHHHHHhhcC---CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007400 111 FDKIPVKNLFSYNNMLSGY------ANLGMMKHARNLFDNMA---ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181 (605)
Q Consensus 111 ~~~~~~~~~~~~~~li~~~------~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 181 (605)
|.+..+-|+..-++++... .....+..+..++...- ..|+...+.|...|.-.|++..++.+...+.....
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 9999886664444333221 12234555666665543 35788899999999999999999999999876331
Q ss_pred C--CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHH
Q 007400 182 S--CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTT 256 (605)
Q Consensus 182 ~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ 256 (605)
. .-...|..+.+++-..|+++.|...|.+..+....-....+..|..+|.+.|+++.+...|+.+... +..+...
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 2334588899999999999999999998887654333455667889999999999999999998865 4456666
Q ss_pred HHHHHHhcC----ChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCChHHHHHHHH
Q 007400 257 MVSGYAKLG----DMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMM----ILRIRPNQHTFSSCLC 325 (605)
Q Consensus 257 li~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~ll~ 325 (605)
+...|...+ ..+.|..++.+..++ |...|-.+...+.... +..++..|.... ..+..+.....+.+..
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 666676664 567888888887764 5667777766665554 444477776544 4566678889999999
Q ss_pred HHhcccchHHHHHHHHHHHHc---CCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhcCCC-CCc-chHHHHHHHH
Q 007400 326 ACASIVSLKHGKQVHGFLIRT---NFRSNT------IVMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENS-MLWNTMISAL 394 (605)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~l~~~~ 394 (605)
.....|+++.|...|..+... ...++. .+--.+..++-..++++.|.+.|..+... |+- ..|-.++...
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma 540 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMA 540 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHH
Confidence 999999999999999988765 112222 23345677778888999999999988754 443 3455555444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh-------
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ------- 467 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~------- 467 (605)
...+...+|...+....... .-|+..+..+...+.....+.-|..-|..+.++....+|+...-.|+..+.+
T Consensus 541 ~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 541 RDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 45688899999999988753 4456667777778888888888888777776554444677776677776543
Q ss_pred -----cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 468 -----AGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 468 -----~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
.+..++|+++|.+.. .+.|..+-+.++.+++..|++..|..+|.++.+..-+.+.+|..++.+|..+|+|..|
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHH
Confidence 345778999998762 3456777788899999999999999999999998777889999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 007400 541 EKVRQLINERQF 552 (605)
Q Consensus 541 ~~~~~~~~~~~~ 552 (605)
+++|+...+.-.
T Consensus 700 IqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 700 IQMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHHhc
Confidence 999999876544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=178.15 Aligned_cols=287 Identities=12% Similarity=0.095 Sum_probs=205.9
Q ss_pred cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhcccchHHHH
Q 007400 264 LGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN---QHTFSSCLCACASIVSLKHGK 337 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~ 337 (605)
.|++++|...|.++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|.
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3444444444444432 1334566666666777777777777776665432211 134556666667777777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC------cchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 338 QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN------SMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
.++..+.+.. +.+..++..++.++.+.|++++|.+.++.+... |+ ...+..++..+...|++++|...++++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7777776653 445566777777777777777777777765432 11 113456777788899999999999999
Q ss_pred HHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC
Q 007400 411 VRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD 486 (605)
Q Consensus 411 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 486 (605)
.+. .|+ ...+..+...+...|++++|..+++++.. ..|+ ..++..++.+|.+.|++++|...++++. ..|+
T Consensus 207 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 207 LAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 874 454 45778888899999999999999999883 2343 4567888999999999999999998863 4567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCcCCCc
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA---LGKGRLVEKVRQLINERQFKKEQA 557 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 557 (605)
...+..++..+.+.|++++|..+++++++..|++. .+..+...+.. .|+.+++..+++.+.+.+++++|.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 66778889999999999999999999999999655 55555555443 568999999999999999988886
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-18 Score=178.86 Aligned_cols=356 Identities=10% Similarity=0.030 Sum_probs=213.6
Q ss_pred HHccCChHHHHHHHhhcCC------CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChH
Q 007400 129 YANLGMMKHARNLFDNMAE------RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202 (605)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 202 (605)
+.++.+++...-.|....+ .+......++..+.+.|++++|..+++........ +...+..++.++...|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 3455566665555555542 12333444556666667777777776666653322 2233344444455566666
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 007400 203 LTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP 282 (605)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 282 (605)
.|...++.+....+. +...+..+..++...|++++|...+++....+ ..+.
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~----------------------------P~~~ 144 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF----------------------------SGNS 144 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------CCcH
Confidence 666666666655432 34455555566666666666665555443211 1234
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (605)
..+..++..+...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+
T Consensus 145 ~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l 222 (656)
T PRK15174 145 QIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 455566666666666666666666655432 222211111223555666666666666665543223333344445666
Q ss_pred HhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcH
Q 007400 363 SKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQ----AIRLFHDMVRSSVKPD-KITLAVILNACTHSGLV 435 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 435 (605)
...|++++|...|+.... +.+...+..+...+...|++++ |+..|++..+ +.|+ ...+..+...+...|++
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCH
Confidence 677777777777765442 2245566667777777777774 6778888777 4554 45777777888888888
Q ss_pred HHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHDS-YLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
++|...++++. ...|+ ...+..+..+|.+.|++++|.+.++++. ..|+. ..+..++.++...|+.++|...|++
T Consensus 301 ~eA~~~l~~al---~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 301 EKAIPLLQQSL---ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888877 33454 5566677788888888888888887753 33443 3333456677788888888888888
Q ss_pred HHhcCCCCC
Q 007400 513 LIDQNPQSS 521 (605)
Q Consensus 513 ~~~~~p~~~ 521 (605)
+++..|++.
T Consensus 378 al~~~P~~~ 386 (656)
T PRK15174 378 YIQARASHL 386 (656)
T ss_pred HHHhChhhc
Confidence 888877653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-18 Score=179.16 Aligned_cols=394 Identities=10% Similarity=0.015 Sum_probs=219.1
Q ss_pred HHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 007400 124 NMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200 (605)
Q Consensus 124 ~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 200 (605)
-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 344455556666666666666543 122235555566666666666666666655521 1223444455555556666
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhC
Q 007400 201 LKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEM 277 (605)
Q Consensus 201 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~ 277 (605)
+++|...++++++..+ .+.. +..+..++...|+.++|...++++... +...+..+...+...+..+.|+..++..
T Consensus 99 ~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 6666666666655532 2333 555555566666666666555555432 2223333444444444444444444444
Q ss_pred CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH-----hcccch---HHHHHHHHHHHHc-CC
Q 007400 278 PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC-----ASIVSL---KHGKQVHGFLIRT-NF 348 (605)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~ 348 (605)
.. ++.....+ . ......++... ...+++ +.|.+.++.+.+. ..
T Consensus 177 ~~-~p~~~~~l-------------------------~--~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 177 NL-TPAEKRDL-------------------------E--ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred CC-CHHHHHHH-------------------------H--HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 33 11100000 0 00001111111 111122 4555555555543 11
Q ss_pred CCChh-HHH----HHHHHHHhcCChHHHHHHHHhcCCCC-Ccc--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--
Q 007400 349 RSNTI-VMS----SLIDMYSKCGCLNDGRQVFDLTDNKE-NSM--LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-- 418 (605)
Q Consensus 349 ~~~~~-~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 418 (605)
.|+.. .+. ..+..+...|++++|+..|+.+...+ +.. .-..+...|...|++++|+..|+++.+. .|.
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~ 306 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIA 306 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCC
Confidence 12111 111 11223345577777777777765431 111 1122455677777777777777776653 222
Q ss_pred ---HHHHHHHHHHHhccCcHHHHHHHHHHchHhhC----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 419 ---KITLAVILNACTHSGLVQEGLTYFESMTHDLG----------IIPN---QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 419 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
......+..++...|++++|..+++.+..... -.|+ ...+..++..+...|++++|++.++++.
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al 386 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA 386 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23455555667777777777777777762210 1122 2345566777888888888888888752
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 483 --YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 483 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+.+...+..++..+...|++++|++.++++++..|++...+..++.++...|++++|+.+++.+.+.
T Consensus 387 ~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 387 YNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34557777788888888888888888888888888888888888888888888888888888887664
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-17 Score=174.51 Aligned_cols=414 Identities=11% Similarity=0.023 Sum_probs=295.1
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--CCchHHHHHHHHHHccCChHHHHHHHhhcCC--C-CceeHHHHHHHHHhcCC
Q 007400 91 SNHLISMYFKCGSDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAE--R-DVVSWNTMIIGYAKSGA 165 (605)
Q Consensus 91 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 165 (605)
+......+.+.|++++|+..|++... |+...|..+..+|.+.|++++|++.++...+ | +...|..+..++...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34566778889999999999999764 6778888899999999999999999998875 2 45678888899999999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 007400 166 VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245 (605)
Q Consensus 166 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (605)
+++|+..|......+-..+.. ...++..+.. ..+........+.. +++...+..+.. |...........-+.+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 999999887776532211211 1111211111 12222233333322 122223332322 2222222222222222
Q ss_pred cCCCCc---chHHHHHHH---HHhcCChHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007400 246 TDARDV---LTWTTMVSG---YAKLGDMESASKLFNEMPEK------NPVSWTTLIAGYTRNGLGQKALELFTRMMILRI 313 (605)
Q Consensus 246 ~~~~~~---~~~~~li~~---~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 313 (605)
....+. ..+..+... ....+++++|.+.|+...+. ....|+.+...+...|++++|+..|++....
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 211111 112211111 12347899999999887642 4457888888999999999999999999875
Q ss_pred CCC-hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHH
Q 007400 314 RPN-QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTM 390 (605)
Q Consensus 314 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l 390 (605)
.|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...+...|++++|...|+.... +.+...+..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 454 5578888888999999999999999998875 56678899999999999999999999997653 2356678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCH--------HHHHHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ--------EHHACL 461 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~l 461 (605)
...+.+.|++++|+..|++.++. .| +...+..+..++...|++++|+..|++.. .+.|+. ..+...
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccHHHHHHHH
Confidence 89999999999999999999884 56 46789999999999999999999999988 333331 112222
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 462 IELLAQAGCSDQLMNQLEKM-PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
...+...|++++|.+++++. ...| +...+..++..+...|++++|+..|++++++.+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33445579999999999885 3334 4557888999999999999999999999999774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-19 Score=175.51 Aligned_cols=293 Identities=12% Similarity=0.094 Sum_probs=159.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCC
Q 007400 159 GYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGE 235 (605)
Q Consensus 159 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 235 (605)
.+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455666666666666655321 2333555555555666666666666665554322111 1344555556666666
Q ss_pred hHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCCCC--------hhhHHHHHHHHHhCCChHHHHHH
Q 007400 236 LSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKN--------PVSWTTLIAGYTRNGLGQKALEL 304 (605)
Q Consensus 236 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~ 304 (605)
+++|..+|+++... +..++..++..+...|++++|.+.++.+.+.+ ...+..++..+.+.|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 66666655555432 23344444455555555555555555443211 11234455556666666666666
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCC
Q 007400 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KEN 383 (605)
Q Consensus 305 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 383 (605)
|+++.+.. +.+...+..+...+.+.|++++|..+++++.+.+......+++.++.+|...|++++|...++.+.. .|+
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 66666532 2233455555566666666666666666666543222234455666666666666666666665442 245
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHchHhhCCCCCHH
Q 007400 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH---SGLVQEGLTYFESMTHDLGIIPNQE 456 (605)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 456 (605)
...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++++. +.++.|++.
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~-~~~~~~~p~ 354 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV-GEQLKRKPR 354 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH-HHHHhCCCC
Confidence 44556666666666666666666666665 35666666655555442 345666666666666 334455443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-17 Score=173.17 Aligned_cols=343 Identities=13% Similarity=0.055 Sum_probs=205.6
Q ss_pred HHhcCChhHHHHHhccCCCC------CchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHH
Q 007400 98 YFKCGSDVDARKVFDKIPVK------NLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEE 168 (605)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 168 (605)
+.+..+|+.---+|...++. +..-...++..+.+.|++++|..+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 45677888877777777642 334456678889999999999999998864 345567777788888999999
Q ss_pred HHHHHHHHHhCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 007400 169 GLKFYKVLRRFSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETD 247 (605)
Q Consensus 169 a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (605)
|.+.|+++.+ ..| +...+..+...+...|+++.|...++.+++..+ .+...+..+..++...|++++|...++.+.
T Consensus 95 A~~~l~~~l~--~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 95 VLQVVNKLLA--VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999988 345 455778888889999999999999999998743 356778888899999999999998777653
Q ss_pred CC---CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007400 248 AR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324 (605)
Q Consensus 248 ~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 324 (605)
.. +...+..+ ..+...|++++|...++. +.+....++...+..+.
T Consensus 172 ~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~-------------------------------~l~~~~~~~~~~~~~l~ 219 (656)
T PRK15174 172 QEVPPRGDMIATC-LSFLNKSRLPEDHDLARA-------------------------------LLPFFALERQESAGLAV 219 (656)
T ss_pred HhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHH-------------------------------HHhcCCCcchhHHHHHH
Confidence 21 11222121 224444555555555444 43332112222223333
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH----HHHHHHhcCC--CCCcchHHHHHHHHHHcC
Q 007400 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND----GRQVFDLTDN--KENSMLWNTMISALTQHG 398 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~--~~~~~~~~~l~~~~~~~g 398 (605)
.++...|++++|...+..+.+.. +.+...+..+...|...|++++ |...|+.... +.+...+..+...+...|
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 34444444444444444444433 3334444445555555555543 4444544321 113344555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 007400 399 YDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMN 476 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 476 (605)
++++|+..+++..+ ..|+ ...+..+..++...|++++|...++++. ...|+. ..+..+..++...|++++|..
T Consensus 299 ~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al---~~~P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 299 QNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLA---REKGVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCccchHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555 2333 3344445555555555555555555555 123332 222333445555555555555
Q ss_pred HHHhC
Q 007400 477 QLEKM 481 (605)
Q Consensus 477 ~~~~~ 481 (605)
.|++.
T Consensus 374 ~l~~a 378 (656)
T PRK15174 374 VFEHY 378 (656)
T ss_pred HHHHH
Confidence 55543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-17 Score=172.87 Aligned_cols=410 Identities=13% Similarity=0.079 Sum_probs=284.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcC
Q 007400 91 SNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSG 164 (605)
Q Consensus 91 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 164 (605)
..=.+......|+.++|++++.+... .+...+..+...+...|++++|..+|++..+ .+...+..++..+...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34466777889999999999999874 2334689999999999999999999999653 34566778888999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007400 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244 (605)
Q Consensus 165 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (605)
++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+..+. +...+..+..++...|..+.|.+.++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999998742 23444 888888899999999999999999998654 56666678888889999999999998
Q ss_pred hcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh---HHHHHHHHHHHHC-CCCCChH-H
Q 007400 245 ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLG---QKALELFTRMMIL-RIRPNQH-T 319 (605)
Q Consensus 245 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~m~~~-g~~p~~~-~ 319 (605)
.... ++.....+ . ...+...... .+.......+++ ++|++.++.+.+. ...|+.. .
T Consensus 175 ~~~~-~p~~~~~l-~-------~~~~~~~~r~----------~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 175 DANL-TPAEKRDL-E-------ADAAAELVRL----------SFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred hCCC-CHHHHHHH-H-------HHHHHHHHHh----------hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 8775 32210000 0 0000000000 000001111222 5666666666643 1222221 1
Q ss_pred HH----HHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC-----cchHHH
Q 007400 320 FS----SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN-----SMLWNT 389 (605)
Q Consensus 320 ~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~~~~ 389 (605)
+. ..+..+...|++++|...|+.+.+.+.+........+...|...|++++|+..|+.+... |. ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 11 112334455777777777777776542211112222466777778888888877765432 21 123445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRSS-----------VKPDK---ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN- 454 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~~-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 454 (605)
+..++...|++++|..+++++.... -.|+. ..+..+...+...|+.++|+..++++. ...|+
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al---~~~P~n 392 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA---YNAPGN 392 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC
Confidence 5566778888888888888877642 12332 245667778889999999999999998 33454
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
...+..++..+...|++++|++.+++.. ..| +...+...+..+...|++++|+.+++++++..|+++.+..
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 7788999999999999999999999863 334 4677777888899999999999999999999998775443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-16 Score=165.04 Aligned_cols=425 Identities=10% Similarity=0.059 Sum_probs=252.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCCCCch---HHHHHHHHHHccCChHHHHHHHhhcCCCCceeHH-HH--HHHHHhc
Q 007400 90 LSNHLISMYFKCGSDVDARKVFDKIPVKNLF---SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWN-TM--IIGYAKS 163 (605)
Q Consensus 90 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~l--i~~~~~~ 163 (605)
.|...+ ...+.|+++.|+..|++..+.++. ....++..+...|+.++|+..+++...|+...+. .+ ...+...
T Consensus 37 ~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 37 QYDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 444333 356889999999999998754332 1237888888889999999999998876444443 33 3467777
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 007400 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243 (605)
Q Consensus 164 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (605)
|++++|+++|+++.+... -+...+..++..+...++.++|++.++.+.... |+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHH
Confidence 999999999999988442 235566677778888899999999988887764 44445544544554466666688888
Q ss_pred hhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhhHHH----HHHHHHhC---------CC---hHHHHH
Q 007400 244 DETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEK-NPVSWTT----LIAGYTRN---------GL---GQKALE 303 (605)
Q Consensus 244 ~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~----l~~~~~~~---------g~---~~~a~~ 303 (605)
+++... +...+..+..++.+.|-...|.++...-+.- +...+.- .+.-.++. .+ .+.|+.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 888764 4566777788888888888888888775531 1111111 11111111 11 233444
Q ss_pred HHHHHHH-CCCCCCh-HHH----HHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 304 LFTRMMI-LRIRPNQ-HTF----SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377 (605)
Q Consensus 304 ~~~~m~~-~g~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 377 (605)
-++.+.. .+-.|.. ..| .=.+-++...++..++...++.+...+.+....+-..+.++|...+++++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4444443 1111221 111 122334555666666666666666665554455556666666666666666666665
Q ss_pred cCCC--------CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcH
Q 007400 378 TDNK--------ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV-----------KPDK---ITLAVILNACTHSGLV 435 (605)
Q Consensus 378 ~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~g~~ 435 (605)
+... ++......|.-++...+++++|..+++++.+... .||+ ..+..++..+...|+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 4321 0111234555666666666666666666665211 1222 1333444555566666
Q ss_pred HHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
.+|++.++.+. ...| |......+...+...|.+.+|++.++... .+.+..+....+.++...|++++|..+.++
T Consensus 433 ~~Ae~~le~l~---~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 433 PTAQKKLEDLS---STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 66666666665 2233 35555666666666666666666665432 122344444555555566666666666666
Q ss_pred HHhcCCCCC
Q 007400 513 LIDQNPQSS 521 (605)
Q Consensus 513 ~~~~~p~~~ 521 (605)
+++..|+++
T Consensus 510 l~~~~Pe~~ 518 (822)
T PRK14574 510 VISRSPEDI 518 (822)
T ss_pred HHhhCCCch
Confidence 666666555
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-16 Score=164.27 Aligned_cols=409 Identities=9% Similarity=-0.009 Sum_probs=280.0
Q ss_pred hhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCc-hHHHHH--HHHHHccCChHHHH
Q 007400 63 AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNL-FSYNNM--LSGYANLGMMKHAR 139 (605)
Q Consensus 63 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l--i~~~~~~~~~~~A~ 139 (605)
.+.|+++.|+..++++++..+..+.. ++ .++..+...|+.++|+..+++...|+. ..+..+ ...+...|++++|.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~a-v~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQ-VD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhh-HH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 36677777777777777666554433 33 566666666777777777777765432 233333 34566667777777
Q ss_pred HHHhhcCC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 007400 140 NLFDNMAE--R-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216 (605)
Q Consensus 140 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 216 (605)
++|+++.+ | ++..+..++..+...++.++|++.++++.. ..|+...+..++..+...++..+|...++++.+..+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~--~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE--RDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc--cCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 77777664 2 344555566667777777777777777765 335555554443344345555557777777777643
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-Ccch--------HHHHHHHH---H--hcCC---hHHHHHHHhhCCC
Q 007400 217 LSNVVISSSIVDAYAKCGELSDARRLFDETDAR-DVLT--------WTTMVSGY---A--KLGD---MESASKLFNEMPE 279 (605)
Q Consensus 217 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~li~~~---~--~~~~---~~~A~~~~~~~~~ 279 (605)
.+...+..++.+..+.|-...|.++..+-..- +... ....++.- . ...+ .+.|+.-++.+..
T Consensus 201 -~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 -TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred -CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 25666666777777777777777777665432 1111 11111100 0 1122 3344444444432
Q ss_pred -----CCh-----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCC-
Q 007400 280 -----KNP-----VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF- 348 (605)
Q Consensus 280 -----~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 348 (605)
|.. ...--.+-++...|++.+|++.|+.+...|.+....+-..+..+|...+++++|..++..+.....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 211 122234567889999999999999999988765666888999999999999999999999977541
Q ss_pred ----CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-------------Cc---chHHHHHHHHHHcCCHHHHHHHH
Q 007400 349 ----RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE-------------NS---MLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 349 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-------------~~---~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
+++......|.-+|...+++++|..+++.+.. .| |. ..+..++..+...|+..+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23344457889999999999999999998765 22 11 12445677788999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 408 HDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 408 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
+++... .| |......+...+...|.+.+|...++.+. .+.|+ ..+....+.++...|++.+|..+.++.
T Consensus 440 e~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 440 EDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999884 55 77799999999999999999999998877 55776 667788889999999999999988775
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-17 Score=150.29 Aligned_cols=473 Identities=13% Similarity=0.097 Sum_probs=298.1
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC------chHHH
Q 007400 52 AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV--KN------LFSYN 123 (605)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~ 123 (605)
-.++..+..-|..+....+|+..|+.+.+....++.-..---+...+.+.+.+.+|++.++-... |+ +...+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 33444444555555666667777766666655555442223344556666666666666554432 11 12333
Q ss_pred HHHHHHHccCChHHHHHHHhhcCC--CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH--------HHHHH
Q 007400 124 NMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSF--------AGILT 193 (605)
Q Consensus 124 ~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--------~~ll~ 193 (605)
.+.-.+.+.|.++.|+..|+...+ |+..+-..|+-++..-|+-++..+.|.+|..-...||..-| ..++.
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 334456777888888888877653 66665555566666678888888889888875555554433 11221
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcC---ChHHHHHHHhhcCCC--CcchHHHHHHHHHhc
Q 007400 194 ICVKLEELKLTRQVHGQVLVTGFLSNV----VISSSIVDAYAKCG---ELSDARRLFDETDAR--DVLTWTTMVSGYAKL 264 (605)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~ 264 (605)
-..+.. .++.|.+.. +.+. .|-..++.--..-. -.+-..+.++.-... ....--.-...+.+.
T Consensus 361 eai~nd-------~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~ 432 (840)
T KOG2003|consen 361 EAIKND-------HLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKN 432 (840)
T ss_pred HHHhhH-------HHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhc
Confidence 111111 111121111 0010 01111111000000 001111111110000 000000112237899
Q ss_pred CChHHHHHHHhhCCCCChhhHHHHHH-----HHHh-CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHH
Q 007400 265 GDMESASKLFNEMPEKNPVSWTTLIA-----GYTR-NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQ 338 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~~~~~~~~~l~~-----~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 338 (605)
|+++.|.+++.-..+.|..+-.+... -|.+ -.++..|.++-+...... +-+....+.-.......|++++|..
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999999998887765443322221 2222 346777777766655432 2333333333334456799999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007400 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416 (605)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 416 (605)
.+++.+...-......|+ +.-.+...|++++|++.|-.+.. ..+......+...|....+...|++++.+... +-
T Consensus 512 ~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--li 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LI 588 (840)
T ss_pred HHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cC
Confidence 999998765333333443 34457788999999999987652 23777888888899999999999999988776 45
Q ss_pred C-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 007400 417 P-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALH 494 (605)
Q Consensus 417 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~ 494 (605)
| |+..+..|...|-+.|+-.+|.+++-.-- + -++-+.++...|...|....-+++++..|++. ..+|+..-|..++
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsy-r-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSY-R-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcc-c-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 5 67799999999999999999998876544 1 34556889999999999999999999999997 3689999998876
Q ss_pred HHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 495 GVC-RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 495 ~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
..| .+.|++.+|+++|+.+.+..|.+..++..|.+++...|..+
T Consensus 667 asc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 655 67899999999999999999999999999999998888643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.3e-16 Score=138.91 Aligned_cols=425 Identities=12% Similarity=0.121 Sum_probs=294.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhh--hcCChhHH-HHHHHHHHHhCCCCCchhhHHHHHHHHHh
Q 007400 24 FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCA--ESKSLKLG-KRVHLHLKLTQRKTPTTFLSNHLISMYFK 100 (605)
Q Consensus 24 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 100 (605)
++.++++|..+++.-+|+.|+..|+..+...-..+++.-+ .+.++.-| .+.|-.+...|..... + .+
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~--s--------WK 191 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS--S--------WK 191 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc--c--------cc
Confidence 3456778999999999999999999888888777776433 33333322 2233334333333322 2 24
Q ss_pred cCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC----CCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 007400 101 CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176 (605)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m 176 (605)
.|++.+ ++-+..-.+..++..+|.++++--..+.|.+++++... -+..+||.+|.+-.-. .-.+++.+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EM 264 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEM 264 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHH
Confidence 565544 44555556778999999999999999999999999874 3667788887664433 237889999
Q ss_pred HhCCCCCChhhHHHHHHHHhccCChHH----HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH-HHHHHhhcCC---
Q 007400 177 RRFSISCNEFSFAGILTICVKLEELKL----TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD-ARRLFDETDA--- 248 (605)
Q Consensus 177 ~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~--- 248 (605)
.+..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 999999999999999999999998865 55788899999999999999999999999888754 4444444332
Q ss_pred -C--------CcchHHHHHHHHHhcCChHHHHHHHhhCCCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 007400 249 -R--------DVLTWTTMVSGYAKLGDMESASKLFNEMPEK-----------NPVSWTTLIAGYTRNGLGQKALELFTRM 308 (605)
Q Consensus 249 -~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 308 (605)
+ |...|...+..|....+.+.|.++..-+... ...-|..+....++....+.-..+|+.|
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 4456778888888999999998887665431 2234666777888889999999999999
Q ss_pred HHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcch--
Q 007400 309 MILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML-- 386 (605)
Q Consensus 309 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 386 (605)
.-.-+-|+..+...++++....+.++-..+++..++..|.......-.-++..+++. ...|+...
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~-------------k~hp~tp~r~ 491 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD-------------KLHPLTPERE 491 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC-------------CCCCCChHHH
Confidence 988889999999999999999999999999999998887544443333333333322 11222221
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH---HHHH
Q 007400 387 -WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH---ACLI 462 (605)
Q Consensus 387 -~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---~~l~ 462 (605)
+.....-|+ ..-.+.....-.+|.+..+ .....+..+..+.+.|..++|.+++..+.++..-.|..... ..++
T Consensus 492 Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 492 QLQVAFAKCA-ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHH-HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 111111111 1111222223334554333 34455666666778888888888888876444433433333 3556
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 007400 463 ELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~ 481 (605)
+.-.+....-.|...++-+
T Consensus 569 d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 6666777788888777766
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.9e-15 Score=134.01 Aligned_cols=425 Identities=14% Similarity=0.152 Sum_probs=294.7
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHH--hcCChhH-HHHHhccCCC---CCchHHHHHH
Q 007400 53 ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF--KCGSDVD-ARKVFDKIPV---KNLFSYNNML 126 (605)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~-a~~~~~~~~~---~~~~~~~~li 126 (605)
.+=+.+++. ..+|....+.-+|+.|...+.+.... .-..|+...+ ...++-- -.+.|-.|.. .+..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 455666665 46788899999999999998877666 5445544333 2223222 2334444442 344444
Q ss_pred HHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHH
Q 007400 127 SGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQ 206 (605)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 206 (605)
+.|.+.+ ++-+...++..+|..||.++++-...+.|.++|++-.....+.+..+||.+|.+-+-. ..++
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 3444443 4444555567899999999999999999999999999988999999999999875432 2388
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHH
Q 007400 207 VHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286 (605)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 286 (605)
++.+|......||..|+|+++.+..+.|+++.|.
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar---------------------------------------------- 293 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDAR---------------------------------------------- 293 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHH----------------------------------------------
Confidence 9999999999999999999999999999998887
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH-HHHHHHHH----HcCC----CCChhHHHH
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG-KQVHGFLI----RTNF----RSNTIVMSS 357 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~----~~~~----~~~~~~~~~ 357 (605)
..|++++.+|++.|+.|...+|..+|..+++.++..+. ..++..+. ...+ +.+...|..
T Consensus 294 ------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 294 ------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred ------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 45667777888888888888888888877777766442 23333332 1222 223445666
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC-------CC---cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDNK-------EN---SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~~-------~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 427 (605)
.+..|.+..+.+-|.++-.-+... |+ ..-|..+....++....+.-..+|+.|+-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 677777777777777766544322 11 12345566667777788888888888887777788888888888
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcC-Ch---H----------HHHHHHHh-------C-CCCC
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG-CS---D----------QLMNQLEK-------M-PYEH 485 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~---~----------~A~~~~~~-------~-~~~~ 485 (605)
+..-.|.++-.-++|..+. .+|...+......+...+++.. +. + -|..+++. + ....
T Consensus 442 A~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 8888888888888888887 5566666555555555555544 21 1 01122221 1 1234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCc--hHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ---NPQSSA--THGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
.....+.++..+.+.|..++|-+++.-..+. .|..+. +...+.+.-.+.+....|..+++.+...+..
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 5667777888889999999999999988654 443332 3346667777788888999999988776543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-13 Score=129.01 Aligned_cols=451 Identities=12% Similarity=0.121 Sum_probs=279.1
Q ss_pred hcCChhHHHHHhccCCC--C-CchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHH
Q 007400 100 KCGSDVDARKVFDKIPV--K-NLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFY 173 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 173 (605)
...+.++|.-++.+..+ | +.. |.-++++..-++.|..+++...+ .+...|-+-...--.+|+.+.+.+++
T Consensus 388 elE~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred hccChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 34444445555555443 1 111 22233444445555555554442 34444444444444555555555554
Q ss_pred HH----HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHH----
Q 007400 174 KV----LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN--VVISSSIVDAYAKCGELSDARRLF---- 243 (605)
Q Consensus 174 ~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~---- 243 (605)
.+ +...|+..+...|..=...|-..|..-.+..+....+..|+... ..+|..-...|.+.+.++-|..+|
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 43 23345555555555555555555555555555555554443221 234444444444444444444444
Q ss_pred ------------------------------hhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHH
Q 007400 244 ------------------------------DETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPE---KNPVSWTT 287 (605)
Q Consensus 244 ------------------------------~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 287 (605)
++.... ....|-.....+-..|+...|..++....+ .+...|-+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 444332 223344444445555666666666655543 13445666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 288 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
.+.......+++.|..+|.+... ..|+...|.--+....-.++.++|.+++++.++.- +.-...|..+.+.+-+.++
T Consensus 624 avKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHH
Confidence 66666666677777777766554 34566666555555555677777777777766652 4445667777777777777
Q ss_pred hHHHHHHHHhcCCC-CC-cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 007400 368 LNDGRQVFDLTDNK-EN-SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESM 445 (605)
Q Consensus 368 ~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 445 (605)
++.|++.|..-... |+ +..|-.+...--+.|..-+|..++++..-.+ +-|...|...++.-.+.|+.+.|..++.++
T Consensus 701 ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777654432 43 3456666666666777777888887777653 225567777777777788888887777777
Q ss_pred hHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 446 THDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 446 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.+ ..+.+...|..-+....+.++-....+.+.++. .|+.+...++..+....+++.|++-|.+++..+|++..+|.
T Consensus 780 LQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 780 LQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence 63 334445667777777777777777777777766 67777888888888889999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEEC
Q 007400 526 LLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIE 564 (605)
Q Consensus 526 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~ 564 (605)
.+...+.+.|.-++-.+++++.... .|.-|..|+.+.
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 9999999999999999999988764 344566676553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-13 Score=123.63 Aligned_cols=491 Identities=14% Similarity=0.118 Sum_probs=322.5
Q ss_pred CChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc-hHHHHHH
Q 007400 50 LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV--KNL-FSYNNML 126 (605)
Q Consensus 50 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li 126 (605)
.+...|..-.+-=..++++..|+.+|+..+...... .. .+...+.+=.++..+..|..++++... |-+ ..|--.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~-it-LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN-IT-LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc-ch-HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 344455555555456667777777777766544222 22 566666666667777777777776653 222 2344444
Q ss_pred HHHHccCChHHHHHHHhhcC--CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHH
Q 007400 127 SGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLT 204 (605)
Q Consensus 127 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 204 (605)
..--..|++..|.++|++-. +|+...|.+.|..-.+-+.++.|..+|+...- +.|+..+|.-..+.-.+.|+...+
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 44455677777777777644 47777777777777777777777777777765 557777777777777777777777
Q ss_pred HHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-----CcchHHHHHHHHHhcCCh---HHHHHHH
Q 007400 205 RQVHGQVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDAR-----DVLTWTTMVSGYAKLGDM---ESASKLF 274 (605)
Q Consensus 205 ~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~---~~A~~~~ 274 (605)
..+|+...+.-- ..+...+.+....-.++..++.|.-+|+-.... ....|..+...--+.|+. ++++--=
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 777776655311 112334444555555566677777776544332 123333333333333443 3333222
Q ss_pred hhC-----CCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH-------HHHHHHHHH---hcccchHHH
Q 007400 275 NEM-----PEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH-------TFSSCLCAC---ASIVSLKHG 336 (605)
Q Consensus 275 ~~~-----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a 336 (605)
+++ ... |-.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+--+| ....+++.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 222 222 4556666777777789999999999998875 566331 222222222 356789999
Q ss_pred HHHHHHHHHcCCCCChhHHHHH----HHHHHhcCChHHHHHHHHhcC-CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSL----IDMYSKCGCLNDGRQVFDLTD-NKENSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
.++++..++. +|....+|..+ .....++.++..|++++.... .-|-..+|...|..-.+.++++.+..+|++.+
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999883 46666666654 344457889999999998644 55788899999999999999999999999999
Q ss_pred HCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHH
Q 007400 412 RSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEHDSYL 489 (605)
Q Consensus 412 ~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 489 (605)
+. .| |..+|......-...|+.+.|..+|+-+.....+......+...++.-...|.+++|..+++++. ..+-..+
T Consensus 465 e~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 465 EF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred hc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 94 55 67899998888888999999999999998554444456677778888889999999999999873 3344557
Q ss_pred HHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhc----CCCCC--chHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 490 WNALHGVCR-----IHG-----------NIDMGRKVVDQLIDQ----NPQSS--ATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 490 ~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~----~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
|-..+..-. ..+ +...|..+|+++... .|... ..+..+-++-...|.-.+...+-.+|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 776665443 334 678899999998765 23111 22334455555667777776666666
Q ss_pred H
Q 007400 548 N 548 (605)
Q Consensus 548 ~ 548 (605)
.
T Consensus 623 P 623 (677)
T KOG1915|consen 623 P 623 (677)
T ss_pred c
Confidence 4
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-12 Score=122.21 Aligned_cols=386 Identities=11% Similarity=0.082 Sum_probs=285.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHh
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVL----VTGFLSNVVISSSIVDAYAK 232 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 232 (605)
..++.+..-++.|..++++.++ .++-+...|.+....--..|+.+...+++++-+ ..|+..+..-|-.=...+-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3455666677888888888776 455677777777777777788887777765543 45677777777777777777
Q ss_pred cCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHH
Q 007400 233 CGELSDARRLFDETDAR------DVLTWTTMVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALE 303 (605)
Q Consensus 233 ~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~ 303 (605)
.|..-.+..+......- -..+|..-...|.+.+.++-|..+|....+ .+...|...+..--..|..+....
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 77777776666655432 235777777888888888888888887765 255567777777677788888888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC
Q 007400 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE 382 (605)
Q Consensus 304 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 382 (605)
+|++.... ++-....+.......-..|+...|..++..+.+.+ +.+..++-.-+.......+++.|+.+|.+... .|
T Consensus 572 llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 572 LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 88888875 23344455555566677789999999998888876 55778888888888888999999999987664 36
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
+...|.--+....-.++.++|.+++++.++ .-|+.. .|..+...+.+.++.+.|...|..=. ..-|+ +..|-.
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~---k~cP~~ipLWll 724 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT---KKCPNSIPLWLL 724 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccCCCCchHHHH
Confidence 777887777777778888999999988888 567754 78888888888888888888887655 23344 677888
Q ss_pred HHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----------------
Q 007400 461 LIELLAQAGCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA---------------- 522 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------------- 522 (605)
|.+.-.+.|.+.+|..++++. ..+.+...|...+..-.+.|+.+.|..+..++++..|.+..
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence 888888888999999999876 34567788888888888999999999888888877665443
Q ss_pred --------------hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 523 --------------THGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 523 --------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.....+..+....++++|.+-|.+....
T Consensus 805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445555555666666666666655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-12 Score=127.97 Aligned_cols=520 Identities=13% Similarity=0.091 Sum_probs=275.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHH
Q 007400 29 SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108 (605)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 108 (605)
-.|++++|.+++.+..+.. +-....|..|...|-+.|+.+++...+-.+....+. +...|..+.......|.++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcccHHHHH
Confidence 3499999999999999876 667889999999999999999998876555544433 3347888888888899999999
Q ss_pred HHhccCCCCCc---hHHHHHHHHHHccCChHHHHHHHhhcCCCCc--------eeHHHHHHHHHhcCChHHHHHHHHHHH
Q 007400 109 KVFDKIPVKNL---FSYNNMLSGYANLGMMKHARNLFDNMAERDV--------VSWNTMIIGYAKSGAVEEGLKFYKVLR 177 (605)
Q Consensus 109 ~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~ 177 (605)
-+|.+..+.++ ..+---...|-+.|+...|.+.|.++..-++ ..-...+..+...++.+.|++.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99998875333 3333445667777877777777777653211 111122334444454455555555544
Q ss_pred hC-CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHH-------------------------------------------
Q 007400 178 RF-SISCNEFSFAGILTICVKLEELKLTRQVHGQVLV------------------------------------------- 213 (605)
Q Consensus 178 ~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------------------------------------- 213 (605)
.. +-..+...++.++..+.+...++.+.........
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 31 1112333444444444444444444444333332
Q ss_pred ------------------hC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC----CcchHHHHHHHHHhcCChHH
Q 007400 214 ------------------TG--FLSNVVISSSIVDAYAKCGELSDARRLFDETDAR----DVLTWTTMVSGYAKLGDMES 269 (605)
Q Consensus 214 ------------------~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~ 269 (605)
.. +.-+...|.-+..+|...|++.+|..+|..+... +...|-.+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 22 1222334444455555555555555555555432 33445555555555555555
Q ss_pred HHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHH--------CCCCCChHHHHHHHHHHhcccchHHHHH
Q 007400 270 ASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMI--------LRIRPNQHTFSSCLCACASIVSLKHGKQ 338 (605)
Q Consensus 270 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 338 (605)
|...+..+... +...--.|...+.+.|++++|.+++..+.. .+..|+..........+...|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55555554432 222333344445555555555555554321 1122233333333334444455444444
Q ss_pred HHHHHHHcCC-----CC-----------------ChhHHHHHHHHHHhcCChHHHHHHHHhcC------CC-CCc----c
Q 007400 339 VHGFLIRTNF-----RS-----------------NTIVMSSLIDMYSKCGCLNDGRQVFDLTD------NK-ENS----M 385 (605)
Q Consensus 339 ~~~~~~~~~~-----~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-~~~----~ 385 (605)
+...++.... -| .......++.+-.+.++......-...-. .. -+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 3333332110 00 00000111111111111111000000000 00 011 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH---H-HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC---HHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKI---T-LAVILNACTHSGLVQEGLTYFESMTHDLGIIPN---QEH 457 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~---~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~ 457 (605)
.+.-++..+++.+++++|+.+...+.....-- +.. . -...+.++...+++..|...++.+....+...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 23446667888899999999888887654211 221 2 233445666788899999888888755333322 223
Q ss_pred HHHHHHHHHh-----------------------------------cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH--
Q 007400 458 HACLIELLAQ-----------------------------------AGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCR-- 498 (605)
Q Consensus 458 ~~~l~~~~~~-----------------------------------~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~-- 498 (605)
|+.....+.+ ++.+..|+..+-+. ...|| +.+-..++.++.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 3422222222 33444555444332 12233 222222222221
Q ss_pred --------hcCCHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 499 --------IHGNIDMGRKVVDQLIDQNP--QSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 499 --------~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++-.+-+++.++.+-.++.. +...+++.+|.+|-..|-..-|..+|+++++..
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 12234566777776666632 245788899999999999999999999998653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=153.72 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=114.2
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF-SSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (605)
.+...+.+.|++++|++++++......+|+...| ..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 3466778889999999999665544323444444 444556667889999999999998776 3366677777777 788
Q ss_pred CChHHHHHHHHhcCC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 366 GCLNDGRQVFDLTDN-KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 366 g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
+++++|.+++...-. .+++..+...+..+...++++++..+++++.... ..++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998876543 3567778888899999999999999999987643 23466788889999999999999999999
Q ss_pred HchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 444 SMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 444 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
++. ...|+ ......++..+...|+.+++.++++... .+.|+..|..++.++...|+.++|+..|+++.+..|+|
T Consensus 171 ~al---~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KAL---ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHH---HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHH---HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 998 44675 7788899999999999999888877652 24566778899999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 521 SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.....+++++...|+.++|.++++++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.6e-14 Score=128.65 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=177.6
Q ss_pred hcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHH
Q 007400 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIR 405 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 405 (605)
.-.|+.-.+..-|+..++.. +.+...|--+..+|....+.++....|+... .+.|+.+|.--.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34678889999999998876 3344447788889999999999999998765 23478889888888889999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 007400 406 LFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PY 483 (605)
Q Consensus 406 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 483 (605)
-|++.++ +.|+ ...|..+.-+..+.+.+++++..|++..+ .++-.++.|+.....+..++++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999 6775 46888888888899999999999999984 44445889999999999999999999999875 23
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 484 EHD---------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 484 ~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+|+ +.+...++..- -.+++.+|..++.++++++|....+|..|+.+..+.|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333 22333333322 34899999999999999999999999999999999999999999998764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-11 Score=113.55 Aligned_cols=449 Identities=12% Similarity=0.086 Sum_probs=336.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCC--CCc-eeHHHHHHHHHhc
Q 007400 90 LSNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDV-VSWNTMIIGYAKS 163 (605)
Q Consensus 90 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~ 163 (605)
.+-....-=...+++..|.++|++... .++..|.-.+..-.+...+..|..+|++... |-+ ..|...+..--..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 344444445567899999999999875 5677888899999999999999999998764 322 3455555555567
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 007400 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243 (605)
Q Consensus 164 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (605)
|+...|.++|+...+ ..|+...|.+.|+.-.+-...+.|..+++..+- +.|++..|-.....-.++|+...|..+|
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 999999999999987 779999999999999999999999999999875 4689999999999999999999999999
Q ss_pred hhcCCC--C----cchHHHHHHHHHhcCChHHHHHHHhhCCC--C---ChhhHHHHHHHHHhCCChHHHHHH--------
Q 007400 244 DETDAR--D----VLTWTTMVSGYAKLGDMESASKLFNEMPE--K---NPVSWTTLIAGYTRNGLGQKALEL-------- 304 (605)
Q Consensus 244 ~~~~~~--~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~-------- 304 (605)
+..... | ...+.++..--.++..++.|.-+|+-..+ | ....|..+...--+-|+.......
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 887653 2 23444555555567778888888776543 1 234455555444455665544433
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChh-HHHHHHH--------HHHhcCChHHHHHHH
Q 007400 305 FTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTI-VMSSLID--------MYSKCGCLNDGRQVF 375 (605)
Q Consensus 305 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~--------~~~~~g~~~~A~~~~ 375 (605)
|+.+... -+-|-.++--.++.-...|+.+...++++.++..-.+.+.. .|...|- .-....+.+.+.++|
T Consensus 311 YE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333 25566777777888888899999999999998764332211 1211111 113467889999999
Q ss_pred HhcCCC-C-Ccch----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhh
Q 007400 376 DLTDNK-E-NSML----WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449 (605)
Q Consensus 376 ~~~~~~-~-~~~~----~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 449 (605)
+...+- | ...| |-.......+..+...|.+++...+. ..|-..+|...|..-.+.++++.+..+|++..
T Consensus 390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl--- 464 (677)
T KOG1915|consen 390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL--- 464 (677)
T ss_pred HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH---
Confidence 864421 2 2333 44444455678899999999988775 78999999999999999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMPYEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
...|. -.+|......-...|+.++|..+|+-...+|. ...|.+.+..-...|.++.|..+|++.++..+ +...|
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvW 543 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVW 543 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHH
Confidence 56665 67888888888899999999999998754553 34677777777889999999999999999988 66688
Q ss_pred HHHHHHHH-----hcC-----------CchHHHHHHHHHHh
Q 007400 525 GLLSSIYS-----ALG-----------KGRLVEKVRQLINE 549 (605)
Q Consensus 525 ~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~ 549 (605)
...+..-. ..| +...|..+|+.+..
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 88877666 344 55578888887743
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-13 Score=135.36 Aligned_cols=312 Identities=13% Similarity=0.127 Sum_probs=187.5
Q ss_pred CChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhC---CCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007400 234 GELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEM---PEKNPVSWTTLIAGYTRNGLGQKALELFTR 307 (605)
Q Consensus 234 g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 307 (605)
|++++|.+++.++... +...|..|...|-..|+.+++...+-.. ...|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4444444444444432 2234444444444444444444433222 122445555555555555666666666655
Q ss_pred HHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhcCC---
Q 007400 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS----SLIDMYSKCGCLNDGRQVFDLTDN--- 380 (605)
Q Consensus 308 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~--- 380 (605)
..+.. +++...+---...|-+.|+...|..-+.++.....+.+..-+. ..++.+...++-+.|.+.++....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 55542 3333333334445555566666665555555544322222222 223444455555666665554332
Q ss_pred -CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHHHHhcc
Q 007400 381 -KENSMLWNTMISALTQHGYDEQAIRLFHDMVRS---------------------------SVKPDKITLAVILNACTHS 432 (605)
Q Consensus 381 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---------------------------~~~p~~~~~~~l~~~~~~~ 432 (605)
..+...+++++..+.+...++.|......+... ++.++... ..+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 123345666666666666666666666555541 12223223 1222333344
Q ss_pred CcHHHHHHHHHHchHhhCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHH
Q 007400 433 GLVQEGLTYFESMTHDLGIIP--NQEHHACLIELLAQAGCSDQLMNQLEKMPYE---HDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 433 g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
...+....+..... +..+.| +...|..+.++|...|++..|+.++..+... .+..+|..++.+|...|.+++|.
T Consensus 391 ~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 44344444444343 335444 3789999999999999999999999987422 34678999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+.|++++...|++..+...|+.++.+.|+.++|.+++..+.
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999998765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-12 Score=121.26 Aligned_cols=262 Identities=11% Similarity=0.042 Sum_probs=209.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
++.....-..-+...+++.+..++.+...+.. +++...+..-|.++...|+..+-..+-..+++.- |..+.+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 55556666777888899999999999888753 5666666666677888888777777777777664 667788889998
Q ss_pred HHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQE 437 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 437 (605)
.|.-.|+..+|++.|.+... +.-...|-.+...|+-.|..++|+..+...-+. -|. ...+..+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence 89889999999999986543 224568999999999999999999998887763 332 2344455566888899999
Q ss_pred HHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 007400 438 GLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--------YEH-DSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 438 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
|..+|.++. ++.|+ +...+.+.-.....+.+.+|..+|+... ..+ -..+++.|+.+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999988 77776 6678888888888899999999887642 111 2446788999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..+++++.+.|.++.++..++-+|...|+++.|++.|.+.+-
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-13 Score=133.99 Aligned_cols=398 Identities=11% Similarity=0.060 Sum_probs=225.2
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007400 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227 (605)
Q Consensus 148 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (605)
+++.+|..++.+-..+|+.+.|..++..|++.|.+.+.+-|..++-+ .++...+..++.-|...|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 67888999999999999999999999999999999999988888765 788999999999999999999999987766
Q ss_pred HHHHhcCChHHHH------------------------HHHhh---------cCCC-------CcchHHHHHHHHHhcCCh
Q 007400 228 DAYAKCGELSDAR------------------------RLFDE---------TDAR-------DVLTWTTMVSGYAKLGDM 267 (605)
Q Consensus 228 ~~~~~~g~~~~a~------------------------~~~~~---------~~~~-------~~~~~~~li~~~~~~~~~ 267 (605)
..+..+|....+. +.++. .+++ ...+|...+.. ..+|+-
T Consensus 279 ip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~ 357 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKG 357 (1088)
T ss_pred HhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCC
Confidence 6555543321111 00000 0000 00111111111 001111
Q ss_pred HHH--------------------------HHHHhhCC---------------------------------CCCh------
Q 007400 268 ESA--------------------------SKLFNEMP---------------------------------EKNP------ 282 (605)
Q Consensus 268 ~~A--------------------------~~~~~~~~---------------------------------~~~~------ 282 (605)
++. ...|.+.. .||.
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv 437 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLV 437 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHh
Confidence 111 11111110 0000
Q ss_pred ----------------------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHH
Q 007400 283 ----------------------VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340 (605)
Q Consensus 283 ----------------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 340 (605)
..-+.++..++..-+..+++..-+.....-+ + ..|..++.-+......+.|..+.
T Consensus 438 ~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~ 514 (1088)
T KOG4318|consen 438 GLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFV 514 (1088)
T ss_pred hhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhch
Confidence 0123344445554444555543333332211 1 45667777777777777777776
Q ss_pred HHHHHc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCc-chHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007400 341 GFLIRT--NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENS-MLWNTMISALTQHGYDEQAIRLFHDMVRS 413 (605)
Q Consensus 341 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 413 (605)
++.... .+..+..-+..+.+.+.+.+...++..++.++.+. |+. .++.-++......|+.+...++.+-+...
T Consensus 515 ~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl 594 (1088)
T KOG4318|consen 515 DEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL 594 (1088)
T ss_pred hhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 666432 23345555666666666666666666666655421 111 12222223333333333333333222221
Q ss_pred C------------------------------CCCCHHHHHHHH---------------------HHHhccCcHHHHHHHH
Q 007400 414 S------------------------------VKPDKITLAVIL---------------------NACTHSGLVQEGLTYF 442 (605)
Q Consensus 414 ~------------------------------~~p~~~~~~~l~---------------------~~~~~~g~~~~a~~~~ 442 (605)
| .+|.+.....+. ..|.+.|++.+|.++.
T Consensus 595 gl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~ 674 (1088)
T KOG4318|consen 595 GLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDIT 674 (1088)
T ss_pred hhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcc
Confidence 1 122221111111 1244455555554444
Q ss_pred HHch-----------HhhCCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 007400 443 ESMT-----------HDLGIIP---------NQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG- 501 (605)
Q Consensus 443 ~~~~-----------~~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g- 501 (605)
+.-- ....+.| +......|+..|.+.|++++|..+|.++++.|+......++..+.+..
T Consensus 675 etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~ 754 (1088)
T KOG4318|consen 675 ETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNE 754 (1088)
T ss_pred ccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhch
Confidence 3210 0000111 111223477789999999999999999998899988888888877654
Q ss_pred --CHHHHHHHHHHHHhc---CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 502 --NIDMGRKVVDQLIDQ---NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 502 --~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
+..++...-+++.+. .|-+...+...+.+..+......|.+.+....+..+
T Consensus 755 evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 755 EVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred hccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 566777777777776 444445555666777777777789999999887744
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-13 Score=124.42 Aligned_cols=449 Identities=10% Similarity=0.060 Sum_probs=267.8
Q ss_pred HHHHHHhcCChhHHHHHhccCCC----CCc-hHHHHHHHHHHccCChHHHHHHHhhcCC--CC------ceeHHHHHHHH
Q 007400 94 LISMYFKCGSDVDARKVFDKIPV----KNL-FSYNNMLSGYANLGMMKHARNLFDNMAE--RD------VVSWNTMIIGY 160 (605)
Q Consensus 94 l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~------~~~~~~li~~~ 160 (605)
|.+-|.......+|+..++.+.+ |+. ..-..+...+.+.+.+.+|+..++.... |+ ....+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33445555666777777776653 221 1111233455666677777777665442 21 12344444456
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH--------HHHHHHHHh
Q 007400 161 AKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVIS--------SSIVDAYAK 232 (605)
Q Consensus 161 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~ 232 (605)
.+.|+++.|+..|+...+ ..|+-.+-..++-++...|+.+...+.|..+......+|..-| ..|+.--.+
T Consensus 287 iq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 677777777777777666 3466665555555555667777777777777665433333211 112211111
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHh---cCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007400 233 CGELSDARRLFDETDARDVLTWTTMVSGYAK---LGDMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTR 307 (605)
Q Consensus 233 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 307 (605)
...+....+--+.+.+.-..+-..+|.-... .-..+-+.+.+..-... -...--.-...+.+.|+++.|+++++-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 1111111100000000000000000000000 00011111111111100 000001123457899999999999998
Q ss_pred HHHCCCCCChHHHHHH--HHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcc
Q 007400 308 MMILRIRPNQHTFSSC--LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM 385 (605)
Q Consensus 308 m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 385 (605)
..+..-+.-+..-+.| +..+....++..|.++-...+... ..+......-...-...|++++|.+.|.+.... |..
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-das 522 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN-DAS 522 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-chH
Confidence 8765433333333322 222222347777777777766543 333333333334455679999999999988766 544
Q ss_pred hHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHH
Q 007400 386 LWNTM---ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACL 461 (605)
Q Consensus 386 ~~~~l---~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 461 (605)
+-.+| .-.+...|+.++|++.|-++..- +..+...+..+...|.-..+..+|++++-+.. .+.|+ +.+.+.|
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~---slip~dp~ilskl 598 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN---SLIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc---ccCCCCHHHHHHH
Confidence 33333 33467789999999999988763 34466788899999999999999999998887 55565 8899999
Q ss_pred HHHHHhcCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 462 IELLAQAGCSDQLMNQLEK-MP-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
...|-+.|+-..|.+..-. .. ++.+..+..-|+..|....=+++|+.+|+++.-+.|.-......++.++.+.|+|.+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 9999999999999987644 33 445666666677777777778999999999999999555555567888899999999
Q ss_pred HHHHHHHHHhC
Q 007400 540 VEKVRQLINER 550 (605)
Q Consensus 540 a~~~~~~~~~~ 550 (605)
|.++++...+.
T Consensus 679 a~d~yk~~hrk 689 (840)
T KOG2003|consen 679 AFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHh
Confidence 99999988654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-14 Score=135.40 Aligned_cols=276 Identities=14% Similarity=0.082 Sum_probs=225.9
Q ss_pred CChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCChHHHHHHHHHHhcccchHHHHHH
Q 007400 265 GDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPNQHTFSSCLCACASIVSLKHGKQV 339 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 339 (605)
=+..+|...|.++.+. ...+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+ +-+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3577888999886542 33456778899999999999999999998742 12255677777766532 223333
Q ss_pred HH-HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007400 340 HG-FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-E-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416 (605)
Q Consensus 340 ~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 416 (605)
+. .+.+.. +..+.+|.++..+|.-+++.+.|++.|++...- | ...+|+.+..-+....++|.|+..|+..+. +.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 33 333333 778899999999999999999999999976543 2 667888888889999999999999999987 66
Q ss_pred CCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 007400 417 PDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNA 492 (605)
Q Consensus 417 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 492 (605)
|.. ..|..+...|.+.++++.|.-.|+++. .+.|. ......++..+.+.|+.++|+++++++- .+.|+..-..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 654 488889999999999999999999998 77887 6677888999999999999999999972 3456666667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+..+...+++++|+..++++.+..|++...+..++.+|.+.|+.+.|+.-|--+.+.
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 7788888999999999999999999999999999999999999999999988877654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-13 Score=132.89 Aligned_cols=276 Identities=12% Similarity=0.106 Sum_probs=194.2
Q ss_pred cCChHHHHHHHhhCCCC--Chh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH--HHHHHHhcccchHHHHH
Q 007400 264 LGDMESASKLFNEMPEK--NPV-SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS--SCLCACASIVSLKHGKQ 338 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 338 (605)
.|+++.|++.+....+. ++. .|.....+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666654432 222 2333344457778888888888887763 45543332 33556677788888888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC--Cc--------chHHHHHHHHHHcCCHHHHHHHHH
Q 007400 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--NS--------MLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--------~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.... +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887776 5667777788888888888888888887766431 11 123333443444555666677777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC
Q 007400 409 DMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHD 486 (605)
Q Consensus 409 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 486 (605)
.+.+. .+.++.....+..++...|+.++|...+++..+ ..|+.... ++.+....++.+++.+.++++. .+.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66543 344677888899999999999999999988882 34555332 2223335589999999888762 3456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+..+..++..|...|++++|.+.|+++++..| +...+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77788899999999999999999999999999 567788999999999999999999987654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-12 Score=118.80 Aligned_cols=328 Identities=14% Similarity=0.081 Sum_probs=251.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhh-HHHHHHHHH
Q 007400 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVS-WTTLIAGYT 293 (605)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l~~~~~ 293 (605)
+...|...+-.....+.+.|..+.|+..|......-+..|.+.+....-.-+.+.+..+...+...+... ---+..++.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 3445666666666677888999999999999888777778777766655556665555554444332221 122345666
Q ss_pred hCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCChH-H
Q 007400 294 RNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR--SNTIVMSSLIDMYSKCGCLN-D 370 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~-~ 370 (605)
...+.+++++-.......|++.+...-+....+.....++++|+.+|+++.+...- .|..+|..++-.--...++. -
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 66788999998888888887777666666666777889999999999999987421 24566665543322222221 2
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhh
Q 007400 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDL 449 (605)
Q Consensus 371 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 449 (605)
|..+++- .+--+.|..++..-|...++.++|...|++.++ +.|.. ..|+.+..-|....+...|...++++.
T Consensus 319 A~~v~~i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv--- 391 (559)
T KOG1155|consen 319 AQNVSNI--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV--- 391 (559)
T ss_pred HHHHHHh--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---
Confidence 3333322 222455677788889999999999999999999 56754 588888899999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
.+.| |-..|..|+++|.-.+...=|+-.|++.. .+.|...|.+|+.+|.+.++.++|++.|++++...-.+..++..
T Consensus 392 di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 392 DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 5566 47799999999999999999999999873 45689999999999999999999999999999997668899999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007400 527 LSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
|+++|.+.++.++|...+++..+
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999988765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-11 Score=104.17 Aligned_cols=480 Identities=13% Similarity=0.075 Sum_probs=286.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH-HHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC
Q 007400 24 FLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFIL-QQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102 (605)
Q Consensus 24 ~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 102 (605)
+-.++.+.++..|+.+++--...+- -........+ .++.+.|++++|...|..+.... .+|.. ..--+...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~e-l~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAE-LGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcc-cchhHHHHHHHHH
Confidence 4467788999999999987764442 2223455555 45568999999999999888744 33444 5555666667789
Q ss_pred ChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 007400 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182 (605)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 182 (605)
.+.+|..+-....+ ++..-..+...--+.++-++-..+-+.+... ...--+|.......-.+.+|+++|+.....+
T Consensus 106 ~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn-- 181 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN-- 181 (557)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 99999998877764 2333344455555666666555554444332 2233345555555668899999999998744
Q ss_pred CChhhHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 007400 183 CNEFSFAGILTI-CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261 (605)
Q Consensus 183 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 261 (605)
|+....|..+.. |.+..-++-+.++++..++.- +.+....|.......+.=+-..|..-.+++...-... -..+.-+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-~~f~~~l 259 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-YPFIEYL 259 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-chhHHHH
Confidence 566666665554 467788888888888877753 2233444444433333222122222222222110000 1112222
Q ss_pred Hhc-----CChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH
Q 007400 262 AKL-----GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336 (605)
Q Consensus 262 ~~~-----~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 336 (605)
++. .+-+.|++++-.+...=+.+--.|+--|.++++..+|..+.+++.- ..|-......+.. ..
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aa------- 328 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AA------- 328 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HH-------
Confidence 222 3345566666555443334444555566777777777766655431 1222111111111 11
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
+..-........-|.+.|+-.... .++..-.++...+.-..++++++-.+.....
T Consensus 329 ---------------------lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 329 ---------------------LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred ---------------------hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111112233444444433322 1333455666666667778888888877766
Q ss_pred CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH-
Q 007400 413 SSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN- 491 (605)
Q Consensus 413 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 491 (605)
- +..|...-..+..+.+..|++.+|.++|-++. ...++-+..-...|.++|.++|+++-|++++-++..+.+..+..
T Consensus 388 Y-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLq 465 (557)
T KOG3785|consen 388 Y-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQ 465 (557)
T ss_pred H-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHH
Confidence 4 33344444557788999999999999998887 22333333344677889999999999999999887444555444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCC
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQ 556 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 556 (605)
.++..|.+.+++--|-+.|+.+-.++| +++-|. |+......+|..+......+.|
T Consensus 466 lIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnWe---------GKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 466 LIANDCYKANEFYYAAKAFDELEILDP-TPENWE---------GKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHccCC-CccccC---------CccchHHHHHHHHHcCCCCCCc
Confidence 456789999999999999998888888 666554 5555556667766554444444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-13 Score=129.69 Aligned_cols=247 Identities=12% Similarity=0.118 Sum_probs=198.0
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChH-HHH
Q 007400 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RSNTIVMSSLIDMYSKCGCLN-DGR 372 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~-~A~ 372 (605)
-+..+|+..|...... +.-+......+..+|...+++++|+++|+.+.+... -.+..+|.+.+-.+-+.=.+. -|.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 4678999999995443 444456667788999999999999999999987531 234566666554332211111 122
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCC
Q 007400 373 QVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451 (605)
Q Consensus 373 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 451 (605)
.+.+.. +..+.+|.++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..=+.....+|.|...|+.+. ++
T Consensus 412 ~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~ 484 (638)
T KOG1126|consen 412 DLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GV 484 (638)
T ss_pred HHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cC
Confidence 222222 22578999999999999999999999999999 778 46799999888999999999999999988 67
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 452 IPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 452 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
.|. -..|..|+-.|.++++++.|+-.|+++ ...| +....-.++..+-+.|+.++|+.++++++.++|.|+-.-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 776 457788888999999999999999997 3445 5566667888899999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007400 529 SIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++...+++++|...++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-10 Score=107.22 Aligned_cols=385 Identities=16% Similarity=0.191 Sum_probs=241.1
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC----------------------ChHHHHHHH
Q 007400 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE----------------------ELKLTRQVH 208 (605)
Q Consensus 151 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------------~~~~a~~~~ 208 (605)
..|.+|..-|.+.|.+++|.++|++..+.- .+..-|..+.++|+... +++-....|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 368888889999999999999998877632 34444444444443211 111222223
Q ss_pred HHHHHhC-----------CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-C--------cchHHHHHHHHHhcCChH
Q 007400 209 GQVLVTG-----------FLSNVVISSSIVDAYAKCGELSDARRLFDETDAR-D--------VLTWTTMVSGYAKLGDME 268 (605)
Q Consensus 209 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--------~~~~~~li~~~~~~~~~~ 268 (605)
+.+.... -+.++..|..-+.. ..|+..+-...|.+.... | ...|..+...|-..|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 3332221 11233333333332 245566666666555432 1 245888888999999999
Q ss_pred HHHHHHhhCCCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-----------------ChHHHHHHH
Q 007400 269 SASKLFNEMPEKN-------PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP-----------------NQHTFSSCL 324 (605)
Q Consensus 269 ~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-----------------~~~~~~~ll 324 (605)
.|..+|++..+-+ ..+|..-...-.++.+++.|+++.+......-.| +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 9999999987632 2356666666677889999999888876421111 112344444
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCCc-chHHHHHHHHHH---c
Q 007400 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD---NKENS-MLWNTMISALTQ---H 397 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~~l~~~~~~---~ 397 (605)
...-..|-++....+++.+++..+ .++.+.....-.+-...-++++.++|++-. +.|++ ..|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 555567888899999999998764 334443444445566677899999999644 33554 367776655544 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHHHhcCChHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKPDKIT--LAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 473 (605)
...+.|..+|++.++ |++|...- |......-.+-|-...|+.+++++. . ++++. ...|+.++.-....=-+..
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat-~-~v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT-S-AVKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 468999999999999 67776542 2222222335688889999999986 3 55554 4567766654443333444
Q ss_pred HHHHHHhC-CCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhc-CCC-CCchHHHHHHHHHhcCCchHHHHH
Q 007400 474 LMNQLEKM-PYEHDSYLWN---ALHGVCRIHGNIDMGRKVVDQLIDQ-NPQ-SSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 474 A~~~~~~~-~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
...+|+++ ..=|+..+-. ..+..-.+.|..++|+.+|...-+. +|. +...|...-..-.+.|+-+-..+.
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 45555553 1124443333 3445567889999999999999887 554 456777888888888985544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-11 Score=111.13 Aligned_cols=194 Identities=13% Similarity=0.086 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007400 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYS 363 (605)
Q Consensus 284 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (605)
|...+.+-|.-.++.++|...|++.++.+ +-....++.+.+-|....+...|.+.++.+++.+ |.|-..|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 33444444444455555555555554432 1222334444444455555555555555555444 444445555555555
Q ss_pred hcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 007400 364 KCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTY 441 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 441 (605)
-.+...-|+-.|++.. .+.|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++.++|...
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 5555555555555432 12245555555555555555555555555555543 22344555555555555555555555
Q ss_pred HHHchHhh---C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 442 FESMTHDL---G-IIPN-QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 442 ~~~~~~~~---~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
|++..... | +.|. .....-|...+.+.+++++|......
T Consensus 489 yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 489 YEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 55444211 1 2221 22222344445555555555554433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-12 Score=125.18 Aligned_cols=278 Identities=10% Similarity=0.053 Sum_probs=151.3
Q ss_pred cCChHHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhcccchHHHHH
Q 007400 264 LGDMESASKLFNEMPE--KN-PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQH--TFSSCLCACASIVSLKHGKQ 338 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~ 338 (605)
.|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+++.+..+. .|+.. ........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3444444444444332 11 122233344555556666666666665442 23322 22223445555666666666
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHH----HHHHHHHcCCHHHHHHHHHHHHH
Q 007400 339 VHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNT----MISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~----l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
.++.+.+.. |.++.+...+...+...|++++|.+.++.+.+. .+...+.. ........+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666554 444455556666666666666666666554432 12221210 11111222222223334444443
Q ss_pred CCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH-HHHHHH--HHhcCChHHHHHHHHhCC--CC
Q 007400 413 SSV---KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH-ACLIEL--LAQAGCSDQLMNQLEKMP--YE 484 (605)
Q Consensus 413 ~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~--~~~~g~~~~A~~~~~~~~--~~ 484 (605)
... +.+...+..++..+...|+.++|...+++..+ ..|+.... ..++.. ....++.+.+.+.+++.. .+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 211 12556667777777777777777777777762 23332210 001222 223456677777776642 23
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 485 HDS--YLWNALHGVCRIHGNIDMGRKVVD--QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 485 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.|+ ....+++..|.+.|++++|.+.|+ .+++..| ++..+..++.++.+.|+.++|.++|++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344 566788888888888888888888 5666778 45556788888888888888888888753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.7e-12 Score=123.56 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=137.8
Q ss_pred cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHH
Q 007400 264 LGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 340 (605)
.|++++|...++++.+ .++..+..+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------------- 228 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------------- 228 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------------
Confidence 3333344344444433 25566677777788888888888888888776543221 111000
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007400 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418 (605)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 418 (605)
...|..++.......+.+...++++.++. +.++.....+...+...|+.++|.+++++..+. .|+
T Consensus 229 -----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~ 295 (398)
T PRK10747 229 -----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYD 295 (398)
T ss_pred -----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 00111122222222344555555555542 236667777788888888888888888888773 445
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 007400 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGV 496 (605)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~ 496 (605)
.... ++.+....++.+++....+...+. .|+ +..+..+.+.+.+.|++++|.+.|++. ...|+...+..+..+
T Consensus 296 ~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~ 370 (398)
T PRK10747 296 ERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADA 370 (398)
T ss_pred HHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5322 223334557888888888887732 344 566778888888888888888888876 456888887788888
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 007400 497 CRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~ 516 (605)
+.+.|+.++|..+|++.+.+
T Consensus 371 ~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 371 LDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 88888888888888888775
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-10 Score=109.27 Aligned_cols=280 Identities=11% Similarity=0.064 Sum_probs=218.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 326 (605)
++........-+...+++.+..++++.+.+.+ ...+..-|..+...|+..+-..+=.++.+. .+-...+|-.+..-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 45555556666777788888888888887643 445566677888889988888888888875 35567788888888
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHH
Q 007400 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAI 404 (605)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~ 404 (605)
|...|+..+|++.|.+....+ +.-...|-.+.+.|.-.|..+.|+..|.....- .....+--+.--|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 889999999999999988765 444567888999999999999999988754321 12222333444578899999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhh-CC---CC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 007400 405 RLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDL-GI---IP-NQEHHACLIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 405 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 478 (605)
+.|.+... +.| |+..++-+.-.....+.+.+|..+|+...... .+ .+ -..+++.|+.+|.+.+++++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999888 667 56688888777778899999999999876211 11 11 3457899999999999999999999
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 479 EKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 479 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
++. ..+.+..++.+++-.|...|+++.|.+.|.+++-+.|++..+-..|..+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 986 2467889999999999999999999999999999999887766666655543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-11 Score=120.90 Aligned_cols=253 Identities=9% Similarity=-0.018 Sum_probs=161.1
Q ss_pred HHhcCChHHHHHHHhhCCC--CCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH
Q 007400 261 YAKLGDMESASKLFNEMPE--KNP--VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336 (605)
Q Consensus 261 ~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 336 (605)
+...|+.+.|.+.+.+..+ |+. .........+...|+++.|...++.+.+.. +-+...+..+...+...|+++.|
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHH
Confidence 3344444444455544322 221 222334556666677777777777766653 33444566666666777777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHH---H----hcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHH
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSLIDMY---S----KCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
.+.+..+.+.+..+.......-..++ . .....+...+.++..+.. .++..+..++..+...|+.++|.+++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 207 DDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 77777777665332222111111111 1 122233444445554421 37778888889999999999999999
Q ss_pred HHHHHCCCCCCHHH---HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh--C-
Q 007400 408 HDMVRSSVKPDKIT---LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK--M- 481 (605)
Q Consensus 408 ~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~- 481 (605)
++..+. .||... ...........++.+.+...++...+...-.|+.....++.+.+.+.|++++|.+.|++ .
T Consensus 287 ~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~ 364 (409)
T TIGR00540 287 FDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC 364 (409)
T ss_pred HHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh
Confidence 999984 455442 12222223445788888888888874322223226677899999999999999999994 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 482 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
...|+...+..++..+.+.|+.++|.++|++.+..
T Consensus 365 ~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 365 KEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45789888889999999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.1e-11 Score=109.06 Aligned_cols=387 Identities=12% Similarity=0.020 Sum_probs=253.0
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCC--CC-ceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhc
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMAE--RD-VVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEF-SFAGILTICVK 197 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~ 197 (605)
+-...+-|.+.|.+++|+..+..... || +..|.....+|...|+|+++.+--.+..+ +.|+.. .+..-.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHh
Confidence 44556678888999999999998764 77 77888888899999999999888877776 445433 33444445566
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---Ccc----------------------
Q 007400 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVL---------------------- 252 (605)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~---------------------- 252 (605)
.|++++|..=..-..-.+---+..+--.+=+.+-+.| ...+.+-+.+-..+ ...
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 6777666532222111111111111110111111111 11122222211111 000
Q ss_pred -hHHHHHHHH----Hh-cCChHHHHHHHhhCC-------CCC---------hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007400 253 -TWTTMVSGY----AK-LGDMESASKLFNEMP-------EKN---------PVSWTTLIAGYTRNGLGQKALELFTRMMI 310 (605)
Q Consensus 253 -~~~~li~~~----~~-~~~~~~A~~~~~~~~-------~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 310 (605)
....+..++ .. ...+..|...+.+-. ..+ ..+.......+.-.|+...|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 111111111 10 112333333333221 111 22233333345567899999999999998
Q ss_pred CCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHH
Q 007400 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWN 388 (605)
Q Consensus 311 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 388 (605)
....++. .|-.+...|....+.++....|..+.+.+ +.++.+|..-..++.-.+++++|..-|++...- .+...|-
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 6533333 27777888999999999999999999987 778888888899999999999999999976642 2566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC---------HHHHH
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN---------QEHHA 459 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---------~~~~~ 459 (605)
.+..+..+.+++++++..|++..+. ++--+..|+.....+...++++.|.+.|+..+ .+.|+ +.+..
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai---~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI---ELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH---hhccccccccccchhhhhh
Confidence 7777778899999999999999985 33345699999999999999999999999988 34443 22222
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.++. +.-.+++..|.+++.+.. ..| ....+..++..-.++|+.++|+++|++...+..
T Consensus 509 a~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 509 ALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3332 223489999999999873 333 355788899999999999999999999988744
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=129.12 Aligned_cols=217 Identities=17% Similarity=0.191 Sum_probs=89.7
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHH
Q 007400 226 IVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQK 300 (605)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 300 (605)
+.......++.+.|.+.++++... ++..+..++.. ...+++++|.+++...-+ +++..+..++..+.+.+++++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence 333334444444444444444332 12223333333 344444444455444322 345556666677777777777
Q ss_pred HHHHHHHHHHCC-CCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 301 ALELFTRMMILR-IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 301 a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
+..+++.+.... .+.+...|..+...+.+.|+.++|...++++++.. |.+..+...++..+...|+.+++.+++....
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 777777766432 23455566666677777777777777777777765 4456667777777777777777666665443
Q ss_pred C--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 380 N--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 380 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
. +.|+..|..+..++...|+.++|+.+|++..+. .| |+.....+..++...|+.++|..+.+++.
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT----------------
T ss_pred HHCcCHHHHHHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 2 235566777777888888888888888887773 34 56677777788888888888887777664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-11 Score=108.46 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=168.7
Q ss_pred CChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHH
Q 007400 265 GDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 341 (605)
|++.+|++...+-.+. ....|..-+.+.-+.|+.+.+-.++.+..+.--.++...+.+........|+++.|..-+.
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 4444444444443221 2223333344445555555555555555543223333344444445555555555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC----------CcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE----------NSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
.+.+.+ +-.+.+.....++|.+.|++.....++..+.+.. ...+|+.+++-....+..+.-...|+...
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 555554 3444555555566666666666666655554320 12356666665555555555555666655
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHH
Q 007400 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM--PYEHDSYL 489 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~ 489 (605)
.. .+-++..-..++.-+..+|+.++|.++.++.. +.+.+|+... .-...+-++...-++..++. ..+.++..
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 44 45556666777777788888888888888887 4466665111 11234455655555555543 12355678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.+|+..|.+++.+.+|.+.|+.+++..| +...|..++.++.+.|+..+|.+++++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 88889999999999999999999998888 888899999999999999999988887763
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-09 Score=101.80 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=96.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc---cCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHHHhcCC
Q 007400 397 HGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTH---SGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELLAQAGC 470 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 470 (605)
+.-++++.++|++-+..=..|+.. .|+..+.-+.+ ...++.|..+|+++. + +.+|. ...|-.....-.+-|-
T Consensus 524 h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL-~-~Cpp~~aKtiyLlYA~lEEe~GL 601 (835)
T KOG2047|consen 524 HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL-D-GCPPEHAKTIYLLYAKLEEEHGL 601 (835)
T ss_pred hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHHHHHhhH
Confidence 344555555555554432234442 55555444332 345788888888888 4 66665 2233333344455677
Q ss_pred hHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chHHHHHHHHHhcCCchHHHHHH
Q 007400 471 SDQLMNQLEKMPYEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS--ATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 471 ~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
...|+.++++....-. ...|+.++.-....=-....+.+|+++++.-|++. ......+++-.+.|..+.|..++
T Consensus 602 ar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 602 ARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 8888888888742222 23555555443333345667889999999988543 34456788889999999999999
Q ss_pred HHHHhCCCcC
Q 007400 545 QLINERQFKK 554 (605)
Q Consensus 545 ~~~~~~~~~~ 554 (605)
....+-..+.
T Consensus 682 a~~sq~~dPr 691 (835)
T KOG2047|consen 682 AHGSQICDPR 691 (835)
T ss_pred HhhhhcCCCc
Confidence 8776554333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-09 Score=94.04 Aligned_cols=273 Identities=12% Similarity=0.046 Sum_probs=191.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhH---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSW---TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 326 (605)
|......+...+...|+.++|+..|++...-|+.+. ....-.+.+.|+.+....+...+.... .-+...|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 444445555555555555555566655544333222 122333456677777776666665421 1222223233333
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHH
Q 007400 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAI 404 (605)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 404 (605)
....+++..|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+... .+-+..+|..|+.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 445667777777777777655 4455555555677888899999999898655 2347789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 405 RLFHDMVRSSVKPDKITLAVIL-NACT-HSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
.+-+...+. +..+..+...+. ..|. ...--++|..+++... .+.|+ ......+...+...|..++++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 888776664 344566666663 3333 3344588999999877 67888 678888999999999999999999986
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 482 -PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 482 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
...||....+.|+..++..+.+.+|.+.|..+++++|++..+...|-
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 46789999999999999999999999999999999998776655443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-11 Score=110.00 Aligned_cols=198 Identities=14% Similarity=0.066 Sum_probs=162.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 428 (605)
....+..+...+...|++++|.+.++.... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355677788888899999999999886542 2246677888889999999999999999998853 2355678888889
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMG 506 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 506 (605)
+...|++++|...++++............+..+..++...|++++|...+++.. .+.+...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998332222335677788899999999999999998862 234567888899999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 507 RKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888889999999999999999999887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-09 Score=99.35 Aligned_cols=203 Identities=12% Similarity=0.081 Sum_probs=136.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 280 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
.++........+|.+.|++..+..++..|.+.|+-.+...-. ....++..++
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------le~~a~~glL 236 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------LEQQAWEGLL 236 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------HHHHHHHHHH
Confidence 466677777788888888888888888888877554432210 0112333344
Q ss_pred HHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 007400 360 DMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQE 437 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 437 (605)
+-....+..+.-...++..+. +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ....-.+.+.++...
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~ 312 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEP 312 (400)
T ss_pred HHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchH
Confidence 333333444444445555542 23566666777778888888888888888888776666 222234556677666
Q ss_pred HHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 438 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
-++..+.-.+..+..| ..+..|+..|.+.+.+.+|...|+.. ...|+...|+-++.++.+.|+..+|.+..++.+..
T Consensus 313 l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 313 LIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6666666654434444 67788888888888888888888864 46788888888888888888888888888888754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-10 Score=101.97 Aligned_cols=263 Identities=12% Similarity=0.107 Sum_probs=161.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQ------HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
+|.+.|.+.|..+.|+.+-+.+... ||. .....|..-|...|-++.|+.+|..+.+.+ ..-......|+.
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~ 149 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLN 149 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHH
Confidence 3444455555555555555444432 221 112223333444555555555555555433 223334455666
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc
Q 007400 361 MYSKCGCLNDGRQVFDLTDN---KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHS 432 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~ 432 (605)
.|-...++++|+++-+++.. .+. ...|.-+...+....+.+.|..++.+..+. .|+. ..-..+.+.....
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~ 227 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAK 227 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhc
Confidence 66666666666666554332 111 123555666667778888999999988884 4544 3555667788888
Q ss_pred CcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007400 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511 (605)
Q Consensus 433 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (605)
|+++.|.+.|+.+. +.+..--..+...|..+|...|+.++....+.++ ...+....-..+...-....-.+.|...+.
T Consensus 228 g~y~~AV~~~e~v~-eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 228 GDYQKAVEALERVL-EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred cchHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 99999999999888 3233333677888889999999999999888775 344555555666665566666788888888
Q ss_pred HHHhcCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCcCCCc
Q 007400 512 QLIDQNPQSSATHGLLSSIYSA---LGKGRLVEKVRQLINERQFKKEQA 557 (605)
Q Consensus 512 ~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 557 (605)
+-+...| +...+..+++.... .|.+.+-...++.|....++..|.
T Consensus 307 ~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 307 RQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 8888888 45555555544432 345666677777776665655554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6e-09 Score=99.32 Aligned_cols=252 Identities=13% Similarity=0.168 Sum_probs=149.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH---HHHhcccch-H-------------HHHHHHHHHHHcCC
Q 007400 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL---CACASIVSL-K-------------HGKQVHGFLIRTNF 348 (605)
Q Consensus 286 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~~-~-------------~a~~~~~~~~~~~~ 348 (605)
..|..++...|+..+|..+|...++.. .+|........ -++..-.++ + .+...+..+....
T Consensus 228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q- 305 (652)
T KOG2376|consen 228 VQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ- 305 (652)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-
Confidence 345556777888888888888888764 34432221111 111111111 1 1111111111110
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCC--HHHHHH
Q 007400 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALT--QHGYDEQAIRLFHDMVRSSVKPD--KITLAV 424 (605)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ 424 (605)
......-+.++..|. +.-+.+.++...++..-....+.+++..+. +......+.+++...-+. .|. ......
T Consensus 306 k~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~ 381 (652)
T KOG2376|consen 306 KQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLL 381 (652)
T ss_pred HHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHH
Confidence 111111223333333 455667777777665422344455554432 333577888888887774 343 345566
Q ss_pred HHHHHhccCcHHHHHHHHH--------HchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-H
Q 007400 425 ILNACTHSGLVQEGLTYFE--------SMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM--------PYEHD-S 487 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-~ 487 (605)
.+......|+++.|..++. .+. +.+. .+.+...+...+.+.++.+-|.+++.+. ...+. .
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~-~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSIL-EAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhh-hhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 6667788999999999999 554 3233 3456667888888888777666666543 11211 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
..+..++..-.++|+.++|..+++++++.+|++......+..+|.+. +.+.|..+-+.+
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 23344455556789999999999999999999999999999999875 456666655443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-10 Score=98.40 Aligned_cols=286 Identities=10% Similarity=0.123 Sum_probs=133.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHH
Q 007400 162 KSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGELSD 238 (605)
Q Consensus 162 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 238 (605)
-+++.++|.++|-+|.+.. +-+..+..++.+.|.+.|..++|..+++.+.++.--+. ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3467777777777776611 11223345555666666666666666666655421111 1122233333444444444
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 007400 239 ARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315 (605)
Q Consensus 239 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 315 (605)
|+ .+|..+.+. -..+...|+..|-+..+|++|+++-+++.+.+-.+
T Consensus 126 AE-------------------------------~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 126 AE-------------------------------DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HH-------------------------------HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 44 444444332 12234445566666666666666666666544333
Q ss_pred ChH----HHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHH
Q 007400 316 NQH----TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMI 391 (605)
Q Consensus 316 ~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 391 (605)
... .|.-+...+....+.+.|...++++.+.+ +. .+..--.+.
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~--------------------------------cvRAsi~lG 221 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KK--------------------------------CVRASIILG 221 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-cc--------------------------------ceehhhhhh
Confidence 221 12222222222333333333333333322 11 222333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCCh
Q 007400 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471 (605)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 471 (605)
+.+...|+++.|++.|+...+.+..--+.+...|..+|...|+.++...++.++. ...+....-..+.+.-....-.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~---~~~~g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM---ETNTGADAELMLADLIELQEGI 298 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HccCCccHHHHHHHHHHHhhCh
Confidence 4555556666666666665554322223355555566666666666666666555 2223333333333333333333
Q ss_pred HHHHHHH-HhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 007400 472 DQLMNQL-EKMPYEHDSYLWNALHGVCRI---HGNIDMGRKVVDQLID 515 (605)
Q Consensus 472 ~~A~~~~-~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 515 (605)
+.|...+ +.+..+|+...+..++..-.. -|...+.+..+++|+.
T Consensus 299 ~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 299 DAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333333 334445666666655554322 2334444555555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-08 Score=99.40 Aligned_cols=490 Identities=11% Similarity=0.037 Sum_probs=272.8
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhh---hcCChhHHHHHHHHHHHhCCCCCchhhHHHHH-----HHHHhcC
Q 007400 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCA---ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLI-----SMYFKCG 102 (605)
Q Consensus 31 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g 102 (605)
++++.++.-+......+.+.++.++..+...+. -.++.+++ .++..+...-..... .+.+++ .-..+.+
T Consensus 241 ~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es~i~Re~--~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 241 SGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEESLIPREN--IEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhhcccccc--HHHHHHHHHHHHHHHHHh
Confidence 556666666666666666666666666555443 33444444 222222222222111 222222 2222222
Q ss_pred ChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 103 SDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 103 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
++ +.+...|..+.-++...|+++.+.+.|++... .....|+.+...+...|.-..|+.+++.-...
T Consensus 318 ~~-----------qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 318 KF-----------QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred hh-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 22 23556777888888888999999999988764 34467888888888888888888888876653
Q ss_pred CCCCC-hhhHHHHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhcC-----------ChHHHHHH
Q 007400 180 SISCN-EFSFAGILTICV-KLEELKLTRQVHGQVLVTG--F--LSNVVISSSIVDAYAKCG-----------ELSDARRL 242 (605)
Q Consensus 180 ~~~p~-~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~ 242 (605)
.-.|+ ...+-..-+.|. +.+.++++..+..++.+.. . ......|..+.-+|...- ...++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 33343 333443444444 5677777777777766622 1 122334444444443321 11234444
Q ss_pred HhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 007400 243 FDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPE----KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315 (605)
Q Consensus 243 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 315 (605)
+++..+. |+.+...+.--|+..++++.|.+..++..+ .+...|..++-.+...+++.+|+.+.+.....- .-
T Consensus 467 le~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~ 545 (799)
T KOG4162|consen 467 LEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GD 545 (799)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hh
Confidence 4444332 333333333445555555555555554332 244555555555555556666655555544320 11
Q ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CC-C-cchHHHH
Q 007400 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN---KE-N-SMLWNTM 390 (605)
Q Consensus 316 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~-~~~~~~l 390 (605)
|......-+..-..-++.+++......+...= -+.. ..-..++-....+....+.- .| + ..++..+
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~-------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEY-------GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHH--Hhhh-------hHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 11111111112222344444443333332210 0000 00011112222223322221 11 1 1222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDK--------ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACL 461 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 461 (605)
....... ...+..-.. +....+.|.+ ..|......+.+.+..++|...+.++. ++.|- ...|...
T Consensus 617 s~l~a~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 617 SSLVASQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLR 690 (799)
T ss_pred HHHHHhh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHh
Confidence 2221111 111110000 2222233322 245556677888899999998988887 45554 6788888
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 007400 462 IELLAQAGCSDQLMNQLEKM-PYE-HDSYLWNALHGVCRIHGNIDMGRK--VVDQLIDQNPQSSATHGLLSSIYSALGKG 537 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 537 (605)
+..+...|..++|.+.|... ... .++.+..+++..+.+.|+...|.. ++..+++.+|.++.+|..++.++.+.|+.
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence 88999999999999999875 233 457788999999999998888888 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 007400 538 RLVEKVRQLINER 550 (605)
Q Consensus 538 ~~a~~~~~~~~~~ 550 (605)
++|.+.|+...+.
T Consensus 771 ~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 771 KQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988664
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=107.09 Aligned_cols=226 Identities=13% Similarity=0.133 Sum_probs=124.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007400 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365 (605)
Q Consensus 286 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (605)
+.+..+|.+.|.+.+|...++..++. .|-..||..+-..|.+..++..|..++.+-++.- +.++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45666666666666666666665553 3444455555555555555555555555544432 22222223333444444
Q ss_pred CChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007400 366 GCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFES 444 (605)
Q Consensus 366 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 444 (605)
++.++|.++|+...+. .| +......+...|...++++-|+.+|++
T Consensus 304 --------------------------------~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 304 --------------------------------EQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred --------------------------------HhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 4444444444444442 22 223344444444444444445544444
Q ss_pred chHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP---YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 445 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
+. ..|+ -+++.|..+.-+|.-.++++-++.-|++.. -+| -..+|..+.......||+..|.+.|+-++..+|+
T Consensus 350 iL-qmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 IL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HH-HhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 44 2232 123444444444444444444444444431 112 2456777777777777888888888877777777
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 520 SSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 520 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..+++.|+..-.+.|+.++|..++....+.
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7888888887777888888888777766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.4e-11 Score=99.74 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIE 463 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 463 (605)
+...|.-+|...|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+++. .+.|+ -++.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345566778999999999999999998 56754 588888889999999999999999988 66776 678899999
Q ss_pred HHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 464 LLAQAGCSDQLMNQLEKMPYEH----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
.++..|++++|...|++....| -..+|..++.+..+.|+.+.|...|++.++.+|+.+.....++......|++..
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999998874333 356788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 007400 540 VEKVRQLINERQF 552 (605)
Q Consensus 540 a~~~~~~~~~~~~ 552 (605)
|...++.....+.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-10 Score=109.26 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=133.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC-------CC--C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCCH-
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTD-------NK--E-NSMLWNTMISALTQHGYDEQAIRLFHDMVR-----SSV-KPDK- 419 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~-------~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~~- 419 (605)
.+...|...+++.+|..+|+++. .. | -..+++.|..+|.+.|++++|...+++..+ .|. .|..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 34555666666666666665432 11 1 123566666677777777776666655442 111 2222
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhC--CCC---C-HHHHHHHHHHHHhcCChHHHHHHHHhCC-------C--C
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLG--IIP---N-QEHHACLIELLAQAGCSDQLMNQLEKMP-------Y--E 484 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~ 484 (605)
..++.+...|...+++++|..+++...+-.. +.+ . ..+++.|...|...|++++|.++++++- . .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2566667778888888888888887654322 222 2 4688999999999999999999998761 1 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C---CCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 485 H-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ----N---PQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 485 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+ ....++.++..|.+.+++.+|.++|.+.... . |+...+|..|+.+|.+.|++++|.++.+.+.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 2456778899999999999999999988765 3 4445678899999999999999999988875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.4e-08 Score=92.42 Aligned_cols=213 Identities=14% Similarity=0.061 Sum_probs=118.0
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC---CchHHHHHHHHHHccCChHHHHH
Q 007400 64 ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK---NLFSYNNMLSGYANLGMMKHARN 140 (605)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~ 140 (605)
..+.+...++..+.+++..+..... .....-.+...|+-++|......-... +.+.|..+.-.+-...++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHges--lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGES--LAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchh--HHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 4455666666666666654444432 222222334456666666555554432 33455555555555666677777
Q ss_pred HHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 007400 141 LFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN-EFSFAGILTICVKLEELKLTRQVHGQVLVTGF 216 (605)
Q Consensus 141 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 216 (605)
.|..... .|...|.-+.-.-++.++++...+....+.+ ..|+ ...|..+..+..-.|+...|..++++..+...
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7666542 3445555555555566666666666666655 2233 33455566666666777777777777766542
Q ss_pred -CCChhHHHHHH------HHHHhcCChHHHHHHHhhcCCC--Ccch-HHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007400 217 -LSNVVISSSIV------DAYAKCGELSDARRLFDETDAR--DVLT-WTTMVSGYAKLGDMESASKLFNEMPEK 280 (605)
Q Consensus 217 -~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~ 280 (605)
.|+...+.... ....+.|..+.|.+.+...... |-.. -..-...+.+.+++++|..++..+..+
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 34444443222 2345567777777666655443 2222 223344566667777777777766653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-08 Score=95.40 Aligned_cols=466 Identities=12% Similarity=0.103 Sum_probs=277.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHH
Q 007400 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISM 97 (605)
Q Consensus 18 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (605)
+.++.-.+.+.+.+++...+.+.+..++. .+-...|+....-.+...|+-++|.......++..+..+. +|..+.-.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v--CwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV--CWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch--hHHHHHHH
Confidence 46677777888999999999999988773 3444555555544555668999999988877776544444 78888777
Q ss_pred HHhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHH
Q 007400 98 YFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLK 171 (605)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 171 (605)
+....++++|+++|..... .|...+.-+.-.-++.|+++..........+ ..-..|..+..++.-.|++..|..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999998763 3556666666566667777777766666553 244678888889999999999999
Q ss_pred HHHHHHhCCC-CCChhhHHHHHH------HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007400 172 FYKVLRRFSI-SCNEFSFAGILT------ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244 (605)
Q Consensus 172 ~~~~m~~~~~-~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (605)
+++...+... .|+...|.-... .....|.++.|.+.+...... +......-..-...+.+.+++++|..++.
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 9999987553 466665543332 334677778887776655433 22123333455677889999999999999
Q ss_pred hcCCCCcc---hHHHHHHHHHhcCChHHHH-HHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh
Q 007400 245 ETDARDVL---TWTTMVSGYAKLGDMESAS-KLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ 317 (605)
Q Consensus 245 ~~~~~~~~---~~~~li~~~~~~~~~~~A~-~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 317 (605)
.+..+++. .|-.+..++.+..+.-++. .+|....+. ....-..=+.......-.+..-.++..+.+.|+++-.
T Consensus 244 ~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf 323 (700)
T KOG1156|consen 244 RLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF 323 (700)
T ss_pred HHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh
Confidence 99887553 3334445554333333333 555554431 1101111111111122234445666777777766544
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCcchHH--HHHHHH
Q 007400 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT-DNKENSMLWN--TMISAL 394 (605)
Q Consensus 318 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~--~l~~~~ 394 (605)
..+.++-. ... ... ++++.. ..|...-.........+.- .++|....|+ .++..+
T Consensus 324 ~dl~SLyk---~p~---k~~-~le~Lv---------------t~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 324 KDLRSLYK---DPE---KVA-FLEKLV---------------TSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred hhhHHHHh---chh---HhH-HHHHHH---------------HHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 43332221 111 110 222211 1111100000000000000 2334444443 355666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCC-CCCHHHHHHHHHHHHhcCChH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGI-IPNQEHHACLIELLAQAGCSD 472 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 472 (605)
-..|+++.|..+++..+. -.|+.+ -|..-.+.+...|+++.|..++++.. ++ .||..+-...++...++.+.+
T Consensus 382 D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~---elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ---ELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH---hccchhHHHHHHHHHHHHHccccH
Confidence 777778888877777776 356654 56666677777778888887777776 33 234444445666677777777
Q ss_pred HHHHHHHhCCCCC-C--------HHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 007400 473 QLMNQLEKMPYEH-D--------SYLWNAL--HGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 473 ~A~~~~~~~~~~~-~--------~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 514 (605)
+|.++........ + ..+|..+ +.+|.++|++..|++-|..+-
T Consensus 457 eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 457 EAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 7777766553111 1 1234333 456667777776666555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.6e-10 Score=114.56 Aligned_cols=246 Identities=11% Similarity=0.080 Sum_probs=178.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHh---------cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007400 296 GLGQKALELFTRMMILRIRPNQ-HTFSSCLCACA---------SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (605)
+..++|+..|++..+. .|+. ..+..+..++. ..+++++|...++++.+.+ +.+...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3467888999888874 4544 34444443332 2345789999999999886 66778888888999999
Q ss_pred CChHHHHHHHHhcCC-CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHH
Q 007400 366 GCLNDGRQVFDLTDN-KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYF 442 (605)
Q Consensus 366 g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~ 442 (605)
|++++|...|++... .| +...+..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999997553 23 566788889999999999999999999999 566543 3344455566789999999999
Q ss_pred HHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 443 ESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 443 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
+++... ..|+ +..+..+..++...|++++|...++++. ..|+ ...++.+...+...| +.|...++++++..-.
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 998722 2343 5567788899999999999999998863 3344 344555666666666 5888888887775222
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 520 SSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 520 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
.+.....+..+|.-.|+.+.+... +++.+.|
T Consensus 506 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222233377777778888888776 7776654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.2e-11 Score=103.70 Aligned_cols=196 Identities=10% Similarity=0.064 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHh-cCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDL-TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACT 430 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~ 430 (605)
.--+.+..+|.+.|.+.+|...++. +...|-+.||..|-+.|.+.+++..|+.++.+-++ ..|-.+ ......+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence 3345678889999999999998885 44567888999999999999999999999999888 456554 4556778888
Q ss_pred ccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRK 508 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 508 (605)
..++.++|.++|+...+ ....+++...++...|.-.++++-|+..+.++. ---++..|..++-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999999982 223347777788888889999999999998752 13577889999999999999999999
Q ss_pred HHHHHHhc--CCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 509 VVDQLIDQ--NPQ-SSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 509 ~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
.|++++.. +|+ -+..|+.++.+....|++..|.+.|+.....+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 99999987 343 457899999999999999999999998876553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-08 Score=98.95 Aligned_cols=420 Identities=14% Similarity=0.071 Sum_probs=265.3
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHHHHHHhhcCC----CCceeHHHHH
Q 007400 85 TPTTFLSNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHARNLFDNMAE----RDVVSWNTMI 157 (605)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li 157 (605)
.+.. +|..+.-++.++|+++.+.+.|++... .....|..+...+...|.--.|..+++.... |+..+--.++
T Consensus 321 nd~a-i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAA-IFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 3444 888888899999999999999999874 3457788888889999998999999988653 2222222222
Q ss_pred -HHHH-hcCChHHHHHHHHHHHhCC--C--CCChhhHHHHHHHHhcc----C-------ChHHHHHHHHHHHHhCCCCCh
Q 007400 158 -IGYA-KSGAVEEGLKFYKVLRRFS--I--SCNEFSFAGILTICVKL----E-------ELKLTRQVHGQVLVTGFLSNV 220 (605)
Q Consensus 158 -~~~~-~~~~~~~a~~~~~~m~~~~--~--~p~~~~~~~ll~~~~~~----~-------~~~~a~~~~~~~~~~~~~~~~ 220 (605)
..|. +.|..++++++-.+..... . ...+..|..+.-+|... . ...++.+.+++.++.+.. |.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 3343 3477788887777766511 1 12333444444444321 1 234667777887776644 33
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHH---HHHHHHH
Q 007400 221 VISSSIVDAYAKCGELSDARRLFDETDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT---TLIAGYT 293 (605)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~ 293 (605)
.+...+.--|+..++++.|.+..++... .+...|..+.-.+...+++.+|+.+.+...+....-|+ .-+..-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 3333345567778899999888877654 36788999999999999999999998877653222121 1122223
Q ss_pred hCCChHHHHHHHHHHHHC--CCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---Ch
Q 007400 294 RNGLGQKALELFTRMMIL--RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG---CL 368 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 368 (605)
.-++.++++.....+... ...+-..+.. .|....-..-+..... ...-.+.++..+.......+ ..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhhccc
Confidence 357777777776666541 0000000000 1111110000010111 11112223332222221111 11
Q ss_pred HHHHHHHHhcCCCCCc------chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 007400 369 NDGRQVFDLTDNKENS------MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTY 441 (605)
Q Consensus 369 ~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 441 (605)
+.....+..... |+. ..|......+.+.+..++|...+.+... +.| ....|......+...|..++|.+.
T Consensus 630 e~~Lp~s~~~~~-~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 630 ELKLPSSTVLPG-PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred ccccCcccccCC-CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 111111111111 221 2455666778888999999988888877 455 455788888888999999999999
Q ss_pred HHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHH--HHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 442 FESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMN--QLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 442 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
|.... .+.|+ +.....+..++.+.|+..-|.. ++..+ . .+.+...|..++..+.+.|+.++|.+.|..++++
T Consensus 707 f~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 707 FLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99887 77887 7789999999999998777776 77665 3 3457899999999999999999999999999999
Q ss_pred CCCCC
Q 007400 517 NPQSS 521 (605)
Q Consensus 517 ~p~~~ 521 (605)
.+.+|
T Consensus 784 e~S~P 788 (799)
T KOG4162|consen 784 EESNP 788 (799)
T ss_pred ccCCC
Confidence 76554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-08 Score=91.30 Aligned_cols=411 Identities=11% Similarity=0.064 Sum_probs=235.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
...+-|++++|+..|+.+.+.. .++......+.-+..-.|.+.+|..+-... +.+...-..+++.-.+.|+-+
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHH
Confidence 3446799999999999988765 466666666666666678888888774432 223313445555666677766
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC--CCceeHHHHH-HHHHhcCChHHHHHHHHHHHhCCCC
Q 007400 106 DARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMI-IGYAKSGAVEEGLKFYKVLRRFSIS 182 (605)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~ 182 (605)
+-....+.+.. ....-.++.+...-.-.+.+|++++.++.. |+-...|.-+ -+|.+..-++-+.+++.-..+. +
T Consensus 139 ~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~- 215 (557)
T KOG3785|consen 139 RILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-F- 215 (557)
T ss_pred HHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-C-
Confidence 66655555443 334455566666666679999999999875 4445555544 5677888888888998887762 2
Q ss_pred CCh-hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-----cCChHHHHHHHhhcCCCCcchHHH
Q 007400 183 CNE-FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK-----CGELSDARRLFDETDARDVLTWTT 256 (605)
Q Consensus 183 p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~ 256 (605)
||+ ...|.......+.-+-..|++-.+.+...+-..-. .+.-.++ ..+-+.|++++-.+...=+..--.
T Consensus 216 pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 216 PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 443 33443333333433444455544554444321111 1122222 234467777766655555555566
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHh
Q 007400 257 MVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNG-------LGQKALELFTRMMILRIRPNQH-TFSSCLCACA 328 (605)
Q Consensus 257 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 328 (605)
++--|.++++..+|..+.+.+...++.-|-.-.-.++..| +..-|.+.|+-.-..+...|.. .-..+..++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 6777889999999999999987655554433333333433 3455556665554444433322 1223334444
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHH-HHHHHHHcCCHHHHHH
Q 007400 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNT-MISALTQHGYDEQAIR 405 (605)
Q Consensus 329 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~-l~~~~~~~g~~~~a~~ 405 (605)
-..+++...-++..+...-...|...+ .+..+++..|++.+|+++|-.+..+ .|..+|.+ |.++|.+.+.++.|..
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH
Confidence 455666666666666554333333322 3566777777777777777665532 14444444 4456666777776665
Q ss_pred HHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH
Q 007400 406 LFHDMVRSSVKPDKITL-AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH 458 (605)
Q Consensus 406 ~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 458 (605)
++-++.. +.+..+. ..+..-|.+.+.+--|-..|+.+. ...|+++.|
T Consensus 450 ~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 450 MMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 5433321 1122222 233344566666666666666655 445555544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.2e-10 Score=115.49 Aligned_cols=212 Identities=11% Similarity=0.038 Sum_probs=167.4
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCC
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK---------CGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGY 399 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 399 (605)
++.++|...++++.+.. +.+...+..+..+|.. .+++++|...+++... +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45689999999999876 4455666666665542 2447899999987553 2367788888889999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 007400 400 DEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQ 477 (605)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 477 (605)
+++|+..|++.++ +.|+ ...+..+..++...|++++|...++++. ...|+. ..+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 5675 5578888999999999999999999998 456653 3334455567778999999999
Q ss_pred HHhCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 478 LEKMP--YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 478 ~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+++.. .+| ++..+..++.++...|++++|...++++....|.+......++..|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98863 234 45567778888999999999999999998889988888888888988888 4888877777553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.9e-10 Score=109.18 Aligned_cols=91 Identities=10% Similarity=0.173 Sum_probs=66.3
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCC
Q 007400 171 KFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD 250 (605)
Q Consensus 171 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 250 (605)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|.....+.+...++.++......++.+.+. .+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35566677778888888888888888888877777 7777777666667777777777777777766655 556
Q ss_pred cchHHHHHHHHHhcCChHH
Q 007400 251 VLTWTTMVSGYAKLGDMES 269 (605)
Q Consensus 251 ~~~~~~li~~~~~~~~~~~ 269 (605)
+.+|..+..+|...|++..
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 6777777777777777544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-09 Score=98.63 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 282 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...+++..+.. +.+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~------- 101 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDV------- 101 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH-------
Confidence 3456666666777777777777777666532 2233444455555555556666655555555443 223333
Q ss_pred HHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLT 440 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 440 (605)
+..+...+...|++++|...+++.......| ....+..+..++...|++++|..
T Consensus 102 -------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 102 -------------------------LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK 156 (234)
T ss_pred -------------------------HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444445555555555555544422111 12344444555555555555555
Q ss_pred HHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 441 YFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 441 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.+++.. ...|+ ...+..+...+...|++++|...+++.. .+.+...+..++..+...|+.+.|..+.+.+...
T Consensus 157 ~~~~~~---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 157 YLTRAL---QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHH---HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555554 11222 3445555555555556555555555431 1233444444555555666666666666555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-07 Score=87.59 Aligned_cols=448 Identities=10% Similarity=0.038 Sum_probs=261.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCC-CCCchhhHHHHHH
Q 007400 18 NCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQR-KTPTTFLSNHLIS 96 (605)
Q Consensus 18 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~ 96 (605)
..++.-+..+..+|++++|+....++...+ +.+...+.+=+-++.+.+.++.|+.+.+. .+. ..... .+..-.-
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~-~~fEKAY 87 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINS-FFFEKAY 87 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcch-hhHHHHH
Confidence 456666667888999999999999999876 66777888888888899999999865432 221 11111 1112223
Q ss_pred HHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 007400 97 MYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVL 176 (605)
Q Consensus 97 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 176 (605)
+.-+.+..++|+..++.....+..+...-...+.+.|++++|..+|+.+.+.+...+...+++-+..--.....+ .+
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~---~~ 164 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ---LL 164 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH---HH
Confidence 334789999999999977666766777888899999999999999999987766666665554332111111111 23
Q ss_pred HhCCCCCChhhHHHHHH---HHhccCChHHHHHHHHHHHHhCC-------------CCCh-hHHHHHHHHHHhcCChHHH
Q 007400 177 RRFSISCNEFSFAGILT---ICVKLEELKLTRQVHGQVLVTGF-------------LSNV-VISSSIVDAYAKCGELSDA 239 (605)
Q Consensus 177 ~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~g~~~~a 239 (605)
......| ..+|..+.+ .+...|++.+|+++++...+.+. .... .+-..|.-++...|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3333334 445555554 34578999999999988844321 0011 1223455567788999999
Q ss_pred HHHHhhcCCC---Ccch----HHHHHHHHHhcCChH-HHHHHHhhCCCC--------------ChhhH-HHHHHHHHhCC
Q 007400 240 RRLFDETDAR---DVLT----WTTMVSGYAKLGDME-SASKLFNEMPEK--------------NPVSW-TTLIAGYTRNG 296 (605)
Q Consensus 240 ~~~~~~~~~~---~~~~----~~~li~~~~~~~~~~-~A~~~~~~~~~~--------------~~~~~-~~l~~~~~~~g 296 (605)
..++..+... |... -|.++..-....-.+ .++..++..... ..+.. +.++..|. +
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 9999887754 2211 122222211111111 122222222111 11111 22222222 2
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007400 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASI--VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374 (605)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 374 (605)
.-+.+.++-.... +..|. ..+..++..+.+. .....+..++....+.....+..+.-..+......|+++.|.++
T Consensus 322 k~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 322 KMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3334433333222 12333 3344444444322 24666777777766654333455666677788888888888888
Q ss_pred HH--------hcCCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHH----HHHHHHHHHhccCcHHHHH
Q 007400 375 FD--------LTDNK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSS--VKPDKI----TLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 375 ~~--------~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~----~~~~l~~~~~~~g~~~~a~ 439 (605)
+. .+.+- -.+.+...+...+.+.++-+.|..++.+.+..- -.+... ++.-++.--.+.|+-++|.
T Consensus 399 l~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 399 LSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 87 33321 133344555556666666666666665544210 011112 3333344445668888999
Q ss_pred HHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
..++++. + -.+++..+...++.+|++. +++.|..+-..+.
T Consensus 479 s~leel~-k-~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 479 SLLEELV-K-FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHH-H-hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 9999888 2 2455678888888888765 5678888777765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-07 Score=85.70 Aligned_cols=264 Identities=10% Similarity=0.015 Sum_probs=195.4
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHH
Q 007400 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT-FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL 358 (605)
Q Consensus 280 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 358 (605)
.|+.....+...+...|+.++|+..|++.+.. .|+..+ .....-.+...|+.+....+...+.... ..+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 48888899999999999999999999998763 344322 1112223356677777777766665533 2333344444
Q ss_pred HHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH
Q 007400 359 IDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLV 435 (605)
Q Consensus 359 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 435 (605)
+......++++.|+.+-++.... .++..+-.-...+...|+.++|.-.|+..+. +.| +..+|..|+.+|...|..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 55566778899998888765432 2555666666778899999999999999888 676 567999999999999999
Q ss_pred HHHHHHHHHchHhhCCCCCHHHHHHHH-HHH-HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIPNQEHHACLI-ELL-AQAGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNIDMGRKVVD 511 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (605)
.+|...-+...+. +.-+..+.+.+. ..+ .....-++|..++++. ..+|+ ....+.++..|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998877766622 233344444442 222 2233457899999885 45666 5567788899999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 512 QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 512 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
+.+...| |......|++++...+.+.+|.+.|....+.+
T Consensus 463 ~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 463 KHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999 78899999999999999999999999887643
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-10 Score=104.22 Aligned_cols=188 Identities=17% Similarity=0.086 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 007400 355 MSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTH 431 (605)
Q Consensus 355 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 431 (605)
|..+...|...|+.+.|...|+.... +.+...|+.+...+...|++++|...|++.++ +.|+ ..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 44444445555555555555543321 11344555555555555555555555555555 3443 3345555555555
Q ss_pred cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVD 511 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 511 (605)
.|++++|.+.+++.. ...|+..........+...+++++|.+.+++.....+...|. ........|+...+ ..++
T Consensus 145 ~g~~~eA~~~~~~al---~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~ 219 (296)
T PRK11189 145 GGRYELAQDDLLAFY---QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLME 219 (296)
T ss_pred CCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHH
Confidence 555555555555555 223332211111112233445555555554321010111111 11111222332222 1222
Q ss_pred HHH-------hcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 512 QLI-------DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 512 ~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+. ++.|....+|..++.++.+.|++++|+..|++..+
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222 22344445556666666666666666666665554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-11 Score=79.59 Aligned_cols=50 Identities=34% Similarity=0.636 Sum_probs=44.3
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 007400 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197 (605)
Q Consensus 148 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 197 (605)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888999999999999999999999999999999999999999988864
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-06 Score=84.94 Aligned_cols=502 Identities=12% Similarity=0.120 Sum_probs=284.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC
Q 007400 23 SFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG 102 (605)
Q Consensus 23 ~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 102 (605)
+...+.+.|++++++-+. .+-|.+|+ |..+++...+ -+++.+.++...+....+ +.. -.+.+...+...+
T Consensus 487 Vi~cfAE~Gqf~KiilY~---kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~-die~I~DlFme~N 556 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILYA---KKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLA-DIEQIVDLFMELN 556 (1666)
T ss_pred HHHHHHHhcchhHHHHHH---HHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCC--Ccc-cHHHHHHHHHHHH
Confidence 334555666666665543 34566676 5566666654 467778887776665443 222 3556666666655
Q ss_pred ChhHHHHHhccCCCC---------------------------------CchHHHHHHHHHHccCChHHHHHHHhhcCC--
Q 007400 103 SDVDARKVFDKIPVK---------------------------------NLFSYNNMLSGYANLGMMKHARNLFDNMAE-- 147 (605)
Q Consensus 103 ~~~~a~~~~~~~~~~---------------------------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-- 147 (605)
....+...+-.+.+. +..-+..+.+.|.+.|-...|++.+..+..
T Consensus 557 ~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIK 636 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIK 636 (1666)
T ss_pred hhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHH
Confidence 555555544333221 112366677788888888888887776642
Q ss_pred C-----CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh--------
Q 007400 148 R-----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVT-------- 214 (605)
Q Consensus 148 ~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------- 214 (605)
+ +...=..++ .|.-.-.++.+.+.++.|...++..|..+...+..-|...=..+...++|+...+.
T Consensus 637 R~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLg 715 (1666)
T KOG0985|consen 637 RVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLG 715 (1666)
T ss_pred HHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHH
Confidence 1 111111222 23334467888888888888787777777666666555554455555555554331
Q ss_pred ---CCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC------------------------CcchHHHHHHHHHhcCCh
Q 007400 215 ---GFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR------------------------DVLTWTTMVSGYAKLGDM 267 (605)
Q Consensus 215 ---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------------~~~~~~~li~~~~~~~~~ 267 (605)
.+..|..+.-.-+.+.++.|++.+.+++.++-.-- |..-+-.=+..|.-.++.
T Consensus 716 Sivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~ 795 (1666)
T KOG0985|consen 716 SIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNL 795 (1666)
T ss_pred HHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhH
Confidence 23456666667788888888888888877654321 211222222223333333
Q ss_pred HHHHHHHhhCCCC-----------C----h-------------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 268 ESASKLFNEMPEK-----------N----P-------------VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 268 ~~A~~~~~~~~~~-----------~----~-------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
.+=++++-.-..| | . ..-.-|+.-.-+.++..--+.+++.....| .-|..|
T Consensus 796 ~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~ 874 (1666)
T KOG0985|consen 796 QKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPAT 874 (1666)
T ss_pred HHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHH
Confidence 3333333322211 0 0 112223334445566666677777777777 467888
Q ss_pred HHHHHHHHhcccchHHHH---------HHHHH-HHHc-----------C--------CCCChhHHHHHHHHHHhcCChHH
Q 007400 320 FSSCLCACASIVSLKHGK---------QVHGF-LIRT-----------N--------FRSNTIVMSSLIDMYSKCGCLND 370 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~---------~~~~~-~~~~-----------~--------~~~~~~~~~~l~~~~~~~g~~~~ 370 (605)
++++...|...++-.+-. .+..+ ..++ | +......|....+.+.+..+.+-
T Consensus 875 hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~L 954 (1666)
T KOG0985|consen 875 HNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDL 954 (1666)
T ss_pred HhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHH
Confidence 888888887655433211 01111 1111 1 01122334445555555555554
Q ss_pred HHHHHHh----------------cCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhc-
Q 007400 371 GRQVFDL----------------TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP--DKITLAVILNACTH- 431 (605)
Q Consensus 371 A~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~- 431 (605)
-.+++.+ +++..|+.....-..++...+-+.+-++++++.+-.+-.. +...-+.|+-...+
T Consensus 955 W~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika 1034 (1666)
T KOG0985|consen 955 WAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA 1034 (1666)
T ss_pred HHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc
Confidence 4444421 2222366666777788888888888888888877432111 11122222222222
Q ss_pred --------------------------cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 007400 432 --------------------------SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEH 485 (605)
Q Consensus 432 --------------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 485 (605)
.+-+++|..+|++.. .+......|+ ..-+..++|.++-+++.
T Consensus 1035 d~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLi---e~i~~ldRA~efAe~~n--- 1102 (1666)
T KOG0985|consen 1035 DRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLI---ENIGSLDRAYEFAERCN--- 1102 (1666)
T ss_pred ChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHH---HHhhhHHHHHHHHHhhC---
Confidence 233344444443321 1222222222 23455566666655554
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
.+.+|..++.+..+.|...+|.+-|-++ +|+..|....++..+.|+|++-.+++...++..-+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 5678999999999999999998877653 57889999999999999999999999888766443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-09 Score=98.15 Aligned_cols=228 Identities=11% Similarity=-0.002 Sum_probs=150.1
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 007400 296 GLGQKALELFTRMMILR-IRPN--QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR 372 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 372 (605)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.+.|...|.++.+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 1222 2345566667777788888888888887765 556778888888888889999998
Q ss_pred HHHHhcCC-CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhC
Q 007400 373 QVFDLTDN-KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLG 450 (605)
Q Consensus 373 ~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 450 (605)
..|+.... .| +..+|..+...+...|++++|++.+++..+ ..|+..........+...++.++|...+.+.. . .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~-~-~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRY-E-K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH-h-h
Confidence 88887543 22 566788888888899999999999999988 45654422222333455678999999997655 2 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHH--HHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C
Q 007400 451 IIPNQEHHACLIELLAQAGCSDQ--LMNQLEKM-PY-----EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-S 521 (605)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~ 521 (605)
..|+... ..+. ....|+... +.+.+.+. .. +....+|..++..+...|++++|+..|+++++.+|.+ .
T Consensus 195 ~~~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 2333222 2222 333454433 33333321 11 1234678899999999999999999999999998743 3
Q ss_pred chHHHHHHHH
Q 007400 522 ATHGLLSSIY 531 (605)
Q Consensus 522 ~~~~~l~~~~ 531 (605)
.....+....
T Consensus 272 e~~~~~~e~~ 281 (296)
T PRK11189 272 EHRYALLELA 281 (296)
T ss_pred HHHHHHHHHH
Confidence 3333344433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-07 Score=89.86 Aligned_cols=373 Identities=11% Similarity=0.105 Sum_probs=220.4
Q ss_pred HHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHH
Q 007400 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVH 208 (605)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 208 (605)
+...|.++.|..-|-+.. ..-..+.+....++|.+|+.+++.+.... .-..-|..+...|+..|+++.|+++|
T Consensus 716 l~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHH
Confidence 334445555544443321 12233556667788999999998887633 33445777888899999999999988
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC--CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHH
Q 007400 209 GQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR--DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWT 286 (605)
Q Consensus 209 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 286 (605)
.+. ..++-.+.+|.+.|+++.|.++-++...+ ....|-+-..-+-..|++.+|++++-.+..|+.
T Consensus 789 ~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~---- 855 (1636)
T KOG3616|consen 789 TEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK---- 855 (1636)
T ss_pred Hhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH----
Confidence 543 34566788999999999999999988877 345566666778889999999999999888864
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (605)
.|+.|-+.|..+..+++..+-... .-..|...+..-+...|++..|+..|-+.-+ |.+-+++|...+
T Consensus 856 -aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 856 -AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASE 922 (1636)
T ss_pred -HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhh
Confidence 467888999999988887764321 1224555667777788888888877655433 456677788888
Q ss_pred ChHHHHHHHHhcCCCCCc-----chHH-------------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007400 367 CLNDGRQVFDLTDNKENS-----MLWN-------------------TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422 (605)
Q Consensus 367 ~~~~A~~~~~~~~~~~~~-----~~~~-------------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 422 (605)
-+++|.++-+.-... |. ..|. .-+...+.++-++-|.++-+-..+.. .|. ..
T Consensus 923 lw~dayriaktegg~-n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vh 998 (1636)
T KOG3616|consen 923 LWEDAYRIAKTEGGA-NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VH 998 (1636)
T ss_pred hHHHHHHHHhccccc-cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--ch
Confidence 888888777643321 11 1111 11122233444444444443333221 121 22
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCC-------CCCHHHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGI-------IPNQEHH---------ACLIELLAQAGCSDQLMNQLEKMPYEHD 486 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~p~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 486 (605)
..+..-+...|++++|...|-+.++-.-. .|+..-. ..-+..+.+..++..|.++-+.-....-
T Consensus 999 lk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l 1078 (1636)
T KOG3616|consen 999 LKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLL 1078 (1636)
T ss_pred hHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhh
Confidence 23333456778888887777666521100 0110000 0011223333444444444333220111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
+.++..-+......|++-+|..++-++ ..|+ ....-|...+.|.+|+++.+.
T Consensus 1079 ~dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1079 ADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred HHHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 223333344445567777777665432 2342 233445667788887776553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.8e-07 Score=88.08 Aligned_cols=201 Identities=13% Similarity=0.089 Sum_probs=92.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHH-------------HhhhcCChhHHHHHHHHHH-------HhCCC
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAET-LAFILQ-------------QCAESKSLKLGKRVHLHLK-------LTQRK 84 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~ll~-------------~~~~~~~~~~a~~~~~~~~-------~~~~~ 84 (605)
+.+..|++.+|..+++.... .|+..+ |..+.. ++..-|+..+++.+.+.+. +.|..
T Consensus 453 aaid~~df~ra~afles~~~---~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggd 529 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLEM---GPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGD 529 (1636)
T ss_pred cccccCchHHHHHHHHhhcc---CccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC
Confidence 34567888888888776542 244433 333322 2333444444444433221 22322
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCce-eHHHHHHHHHhc
Q 007400 85 TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVV-SWNTMIIGYAKS 163 (605)
Q Consensus 85 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~ 163 (605)
... .|..-.....-..++.+|..+|-+-. .-...|..|....++++|+.+-+....|-.. .-.+.++++...
T Consensus 530 gt~--fykvra~lail~kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 530 GTD--FYKVRAMLAILEKKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred Cch--HHHHHHHHHHHHhhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhc
Confidence 222 23322222222345556655543321 1223455666666777777666655444221 112334444555
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 007400 164 GAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLF 243 (605)
Q Consensus 164 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 243 (605)
|+-++|-++-. +..--.+.|..|.+.|.+..|......- ..+..|......+..++.+..-+++|-.+|
T Consensus 603 ~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~--~~l~~de~il~~ia~alik~elydkagdlf 671 (1636)
T KOG3616|consen 603 GQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALND--EELLADEEILEHIAAALIKGELYDKAGDLF 671 (1636)
T ss_pred Cchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCH--HHhhccHHHHHHHHHHHHhhHHHHhhhhHH
Confidence 55555543311 1111223456666666665555432111 112234444444555555555555555555
Q ss_pred hhcC
Q 007400 244 DETD 247 (605)
Q Consensus 244 ~~~~ 247 (605)
+++.
T Consensus 672 eki~ 675 (1636)
T KOG3616|consen 672 EKIH 675 (1636)
T ss_pred HHhh
Confidence 5544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-08 Score=86.18 Aligned_cols=297 Identities=12% Similarity=0.098 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHH---HHHHhcCChHHHHHHHhhCCCCChhhHHHH---HHHHH
Q 007400 220 VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMV---SGYAKLGDMESASKLFNEMPEKNPVSWTTL---IAGYT 293 (605)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~ 293 (605)
+.-...+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+.++.+..+..+.+- ...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 333444566666777778888777777777776666654 346677777777777777665333333332 34567
Q ss_pred hCCChHHHHHHHHHHHHCCCCCChHH----------------HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHH
Q 007400 294 RNGLGQKALELFTRMMILRIRPNQHT----------------FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS 357 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~p~~~~----------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 357 (605)
++|.+++|..-|+.+++.. |+..+ ....+..+...|+...+......+++.. +-+...+..
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 7888888888888877653 22111 1122334455677777777777777765 556677777
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHH---HH------
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLA---VI------ 425 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~---~l------ 425 (605)
-..+|...|++..|+.-+..... ..+..++.-+-..+...|+.+.++...++.++ +.||.. +|. .|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHH
Confidence 77777777777777766654332 12555666666667777777777777777777 566653 111 11
Q ss_pred ---HHHHhccCcHHHHHHHHHHchHhhCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007400 426 ---LNACTHSGLVQEGLTYFESMTHDLGIIPN-----QEHHACLIELLAQAGCSDQLMNQLEKM-PYEH-DSYLWNALHG 495 (605)
Q Consensus 426 ---~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 495 (605)
+......++|.+++.-.+... ...|. ...+..+..++...|++.+|++...+. ...| |+.++-.-+.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vl---k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVL---KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH---hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 011223445555555555554 12222 223444555555666666666665553 2223 3555555566
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
+|..-..++.|+.-|+++.+.+|+|..+-
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 66666666666666666666666554433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-07 Score=90.62 Aligned_cols=282 Identities=11% Similarity=0.021 Sum_probs=190.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcC--
Q 007400 25 LSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCG-- 102 (605)
Q Consensus 25 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 102 (605)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..++..+|.... -|..+..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~--Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD--YYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHhhhccc
Confidence 3567889999999999886543 4455566777788899999999999999999999864433 4667777663332
Q ss_pred ---ChhHHHHHhccCCC--CCchHHHHHHHHHHccCChH-HHHHHHhhcCCCCc-eeHHHHHHHHHhcCChHHHHHHHHH
Q 007400 103 ---SDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMK-HARNLFDNMAERDV-VSWNTMIIGYAKSGAVEEGLKFYKV 175 (605)
Q Consensus 103 ---~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~ 175 (605)
+.+....+++++.. |...+...+.-.+.....+. .+...+..+.++.+ .+|+.|-..|.......-..+++..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 45666777777753 22222212211122212222 23333344444444 4455555555545555555566665
Q ss_pred HHhC----C----------CCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 176 LRRF----S----------ISCNE--FSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239 (605)
Q Consensus 176 m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (605)
.... + -.|+. .++..+...+...|+++.|..+++..++..+. .+..|..-.+.+-+.|++.+|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHH
Confidence 5431 1 12333 24455667788999999999999999887532 477888889999999999999
Q ss_pred HHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChh----------h--HHHHHHHHHhCCChHHHHHH
Q 007400 240 RRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPV----------S--WTTLIAGYTRNGLGQKALEL 304 (605)
Q Consensus 240 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~----------~--~~~l~~~~~~~g~~~~a~~~ 304 (605)
.+.++....- |...-+..+..+.+.|+.++|.+++.....++.. . ......+|.+.|++..|+..
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999887764 5667777888899999999999999888765411 1 24456788999999999888
Q ss_pred HHHHHH
Q 007400 305 FTRMMI 310 (605)
Q Consensus 305 ~~~m~~ 310 (605)
|..+.+
T Consensus 328 ~~~v~k 333 (517)
T PF12569_consen 328 FHAVLK 333 (517)
T ss_pred HHHHHH
Confidence 877654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.3e-11 Score=76.95 Aligned_cols=50 Identities=30% Similarity=0.573 Sum_probs=47.0
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007400 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431 (605)
Q Consensus 382 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 431 (605)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-07 Score=86.72 Aligned_cols=235 Identities=9% Similarity=0.019 Sum_probs=113.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHH-------
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSS------- 357 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 357 (605)
...+.++..+..++..|++-+....... -+..-++....++...|.+......-....+.|- ....-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 3445556666666666666666666542 3333334444555555555555554444444331 11111111
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcH
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDNK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLV 435 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~ 435 (605)
+..+|.+.++++.++..|.+.... .++ ....+....+++....+...- +.|... -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~-------~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTP-------DLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCH-------HHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 222444445555555555543211 010 111222333444443333333 233221 122224445566666
Q ss_pred HHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-Y-EHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
..|+..|.++++ ..|+ ...|....-+|.+.|.+..|+.-.+... . ++....|..-+.++....+++.|.+.|++
T Consensus 375 ~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666662 2243 5566666666666666666665555432 1 22233444444455555566666666666
Q ss_pred HHhcCCCCCchHHHHHHHHHhc
Q 007400 513 LIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 513 ~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
+++.+|.+......+.++....
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 6666666665555555555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-07 Score=81.92 Aligned_cols=407 Identities=11% Similarity=0.051 Sum_probs=214.2
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCCC---CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH-HHHHhc
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMAER---DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI-LTICVK 197 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~ 197 (605)
+.+.+..+.+..++++|++++..-.++ +....+.|..+|....++..|.+.|+++-. ..|...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence 556666677777888888877766543 344566667777777788888888887766 44555555332 334556
Q ss_pred cCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHHhhcCC-CCcchHHHHHHHHHhcCChHHHHHHH
Q 007400 198 LEELKLTRQVHGQVLVTGFLSNVV--ISSSIVDAYAKCGELSDARRLFDETDA-RDVLTWTTMVSGYAKLGDMESASKLF 274 (605)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~ 274 (605)
.+.+..|..+...|... ++.. +...-.......+++..+..++++... .+..+.+...-...+.|+++.|.+-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 66677777776666432 1111 111111122334555566655555553 33333333333444455555555555
Q ss_pred hhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHHhcccchHHHHHHHHHHHHcCCC
Q 007400 275 NEMPEK----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF-SSCLCACASIVSLKHGKQVHGFLIRTNFR 349 (605)
Q Consensus 275 ~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 349 (605)
+...+- ....||..+ +..+.|+++.|++...++...|++..+..- .....+- ....+.....+. .+
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~lh----~S--- 238 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLVLH----QS--- 238 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchHHHH----HH---
Confidence 544331 222333322 233445555555555555555443221100 0000000 000000000000 00
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 007400 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAV 424 (605)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ 424 (605)
.-+..+|.-...+.+.|+++.|.+.+-.|+.+ .|++|...+.-.= ..+++....+-+.-++.. .| ...||..
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFAN 315 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFAN 315 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHH
Confidence 00122344445567889999999999999865 4677766654322 245555556666666664 44 4569999
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCC-CCHHHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGII-PNQEHHACLIELLA-QAGCSDQLMNQLEKMPYEHDSYLWNALHGVC-RIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~~~g 501 (605)
++-.|++..-++.|-.++.+-. +.-+. .+...|+ |++++. -.-..++|.+-++.+............+..- .+..
T Consensus 316 lLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988886543 11111 1223333 334443 3346666666655542111111111111111 1111
Q ss_pred C----HHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 502 N----IDMGRKVVDQLIDQ-NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 502 ~----~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
+ ...|++-|++.+++ -| .....+++|++..++..+.+.|..-.+..
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~YLP----VlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKYLP----VLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 1 23455556666666 34 67788999999999999999998766543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-08 Score=84.14 Aligned_cols=191 Identities=14% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-C-CCCcchHHHHHHHHHHcCCHHH
Q 007400 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD-N-KENSMLWNTMISALTQHGYDEQ 402 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~ 402 (605)
..|...|+...|..-+++++++. +.+..++..+...|-+.|+.+.|.+.|+... . +.+-...|.....+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 34444444444444444444443 3333444444444444455555544444322 1 1133444445555555555555
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 403 AIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 403 a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
|...|++....-.-|. ..+|..+..+..+.|+.+.|...|++.. ...|+ ....-.+.+...+.|++..|...+++
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL---ELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH---HhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 5555555554322222 2355555555555555555555555554 23333 33444455555555555555555554
Q ss_pred CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 481 MP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 481 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.. ..++..++...+..-...|+.+.+-+.=.++.+..|.
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 31 2234444443444444555555555555555555553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-07 Score=92.08 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=123.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 007400 31 GQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKV 110 (605)
Q Consensus 31 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 110 (605)
.+...|+..|-+..+... -=...|..+...|+...+...|.+.|+...+.. +............|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHH
Confidence 346667777776666542 124578888888887778889999999887665 33333677888999999999999888
Q ss_pred hccCCCCCc-----hHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 007400 111 FDKIPVKNL-----FSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSIS 182 (605)
Q Consensus 111 ~~~~~~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 182 (605)
.-...+.++ ..|....-.|.+.++..+|...|+...+ .|...|..++.+|...|++..|.++|.+... +.
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LR 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cC
Confidence 444433222 3344455567778888888888888775 3566777888999999999999999988766 44
Q ss_pred CChhhHHHHHH--HHhccCChHHHHHHHHHHHH
Q 007400 183 CNEFSFAGILT--ICVKLEELKLTRQVHGQVLV 213 (605)
Q Consensus 183 p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~ 213 (605)
|+. +|...-. .-+..|.+.++...+..+..
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 443 2222222 23456788888877776654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.2e-08 Score=96.65 Aligned_cols=245 Identities=13% Similarity=0.107 Sum_probs=123.0
Q ss_pred HHHHHhcCChHHHHHHHhhcCCC--Cc-chHHHHHHHHHhcCChHHHHHHHhhCCCCC---hhhHHHHHHHHHhC-----
Q 007400 227 VDAYAKCGELSDARRLFDETDAR--DV-LTWTTMVSGYAKLGDMESASKLFNEMPEKN---PVSWTTLIAGYTRN----- 295 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~----- 295 (605)
..++...|++++|++.+++.... |. .........+.+.|+.++|..++..+.+.| ..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 44566778888888777665543 33 234445566667777777777777766532 22334444443222
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchH-HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007400 296 GLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK-HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 374 (605)
.+.+...++|+++... -|.......+.-.+.....+. .+..++..+...|+| .+|+.|-..|....+..-..++
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 2345556666666553 244444433333333322332 333445555555543 2455555555544444433333
Q ss_pred HHhcC-----------------CCCCcc--hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCc
Q 007400 375 FDLTD-----------------NKENSM--LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGL 434 (605)
Q Consensus 375 ~~~~~-----------------~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 434 (605)
+.... ..|... ++.-+...|-..|++++|++++++.++ ..|+ ...|..-.+.+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCC
Confidence 33211 011221 223344455555666666666666555 2444 3355555555566666
Q ss_pred HHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 435 VQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
+.+|...++.+. .+.+ |..+-+..+..+.|+|++++|.+.+...
T Consensus 244 ~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 244 LKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 666666665555 2332 2333444455555666666665555544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-07 Score=93.12 Aligned_cols=239 Identities=15% Similarity=0.159 Sum_probs=116.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCChhh-HHHHHHHHhccCChHHHHHHHHHHHHh-----CC-CC-
Q 007400 153 WNTMIIGYAKSGAVEEGLKFYKVLRRF-----SI-SCNEFS-FAGILTICVKLEELKLTRQVHGQVLVT-----GF-LS- 218 (605)
Q Consensus 153 ~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~- 218 (605)
...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+.++.. |. .|
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333556666666666666666665442 10 122222 222444455555555555555555442 10 11
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCh-hhHHHHHHHHHh
Q 007400 219 NVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE---KNP-VSWTTLIAGYTR 294 (605)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~-~~~~~l~~~~~~ 294 (605)
-..+++.|..+|.+.|++++|...+++ |.++++.... +.+ ..++.++..+..
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~------------------------Al~I~~~~~~~~~~~v~~~l~~~~~~~~~ 337 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCER------------------------ALEIYEKLLGASHPEVAAQLSELAAILQS 337 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHH------------------------HHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 123344444455555555555544433 2234443221 122 235556666777
Q ss_pred CCChHHHHHHHHHHHHC---CCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 295 NGLGQKALELFTRMMIL---RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371 (605)
Q Consensus 295 ~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 371 (605)
.+++++|..+++...+. -..++. ..-..+++.|...|...|++++|
T Consensus 338 ~~~~Eea~~l~q~al~i~~~~~g~~~-------------------------------~~~a~~~~nl~~l~~~~gk~~ea 386 (508)
T KOG1840|consen 338 MNEYEEAKKLLQKALKIYLDAPGEDN-------------------------------VNLAKIYANLAELYLKMGKYKEA 386 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhhccccc-------------------------------hHHHHHHHHHHHHHHHhcchhHH
Confidence 77777777777755431 011111 11123444555555555555555
Q ss_pred HHHHHhcCC-------C---CCcchHHHHHHHHHHcCCHHHHHHHHHHHH----HCCC-CCCH-HHHHHHHHHHhccCcH
Q 007400 372 RQVFDLTDN-------K---ENSMLWNTMISALTQHGYDEQAIRLFHDMV----RSSV-KPDK-ITLAVILNACTHSGLV 435 (605)
Q Consensus 372 ~~~~~~~~~-------~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~-~p~~-~~~~~l~~~~~~~g~~ 435 (605)
.++|+++.. + .....++-+...|.+.+++.+|.++|.+.. ..|. .|+. .+|..|...|...|++
T Consensus 387 ~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 387 EELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred HHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 555543221 0 012234555556666666666666655432 2221 2232 4677777777777777
Q ss_pred HHHHHHHHHch
Q 007400 436 QEGLTYFESMT 446 (605)
Q Consensus 436 ~~a~~~~~~~~ 446 (605)
+.|.++.+.+.
T Consensus 467 e~a~~~~~~~~ 477 (508)
T KOG1840|consen 467 EAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-07 Score=80.54 Aligned_cols=307 Identities=14% Similarity=0.083 Sum_probs=204.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc
Q 007400 22 QSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC 101 (605)
Q Consensus 22 ~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 101 (605)
..+..+++..++.+|++++....+.. +-+...++.+..+|....++..|...|+++-...|.......| -.+.+-+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--QAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--HHHHHHHh
Confidence 33446678899999999999988865 3477788888889999999999999999998776554443233 34566688
Q ss_pred CChhHHHHHhccCCCC-CchHHHHHHH--HHHccCChHHHHHHHhhcC-CCCceeHHHHHHHHHhcCChHHHHHHHHHHH
Q 007400 102 GSDVDARKVFDKIPVK-NLFSYNNMLS--GYANLGMMKHARNLFDNMA-ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLR 177 (605)
Q Consensus 102 g~~~~a~~~~~~~~~~-~~~~~~~li~--~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 177 (605)
+.+.+|+++...|... +...-..-+. .....+++..+..++++.+ +.+..+.+.......+.|+++.|++-|+...
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 9999999999998863 3322222222 3345788999999999998 4677777777777789999999999999998
Q ss_pred hCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH----HHHHHHHHHhcCCh-HHHHHHHhhcCCCCcc
Q 007400 178 RFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVI----SSSIVDAYAKCGEL-SDARRLFDETDARDVL 252 (605)
Q Consensus 178 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~ 252 (605)
+-+---....|+..+. ..+.++++.|.+...++++.|++..... -...+++- ..|+. ..+..- =..
T Consensus 172 qvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sa-------l~e 242 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSA-------LVE 242 (459)
T ss_pred hhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchHHHHHHH-------HHH
Confidence 8554445567776654 4567899999999999999886422211 00001100 00100 000000 011
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007400 253 TWTTMVSGYAKLGDMESASKLFNEMPEK-----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327 (605)
Q Consensus 253 ~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 327 (605)
.+|.-...+.+.|+++.|.+.+..|+.+ |+++...+.-. -..+++....+-+.-+...+ +....||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 2333344467788888888888888753 66665544322 12344555555555555543 34456888888888
Q ss_pred hcccchHHHHHHHHH
Q 007400 328 ASIVSLKHGKQVHGF 342 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~ 342 (605)
|+..-++.|..++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 888888888777654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.7e-07 Score=86.60 Aligned_cols=436 Identities=10% Similarity=-0.007 Sum_probs=248.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChh
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDV 105 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 105 (605)
..++.|+++.|+..|.+..... +++...|..-..++...|++++|++=-.+-++..+..+. .|+....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k--gy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK--GYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh--HHHHhHHHHHhcccHH
Confidence 4567899999999999998876 557778888888999999999998877777766655544 6999999999999999
Q ss_pred HHHHHhccCCCC---CchHHHHHHHHHHccCChHHH-HHHHhhcCCCCceeHHHHH-----HHHHhcCChHHHHHHHHHH
Q 007400 106 DARKVFDKIPVK---NLFSYNNMLSGYANLGMMKHA-RNLFDNMAERDVVSWNTMI-----IGYAKSGAVEEGLKFYKVL 176 (605)
Q Consensus 106 ~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m 176 (605)
+|+..|.+-.+. |...++-+..++ ..+.+ .+.|. ++..|..+. +.+...-.+... ++..
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~---l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKI---LEII 155 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHH---HHHh
Confidence 999999887653 345566666555 11111 11111 111121111 111111111111 1111
Q ss_pred HhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC-------
Q 007400 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR------- 249 (605)
Q Consensus 177 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 249 (605)
.+ .|+. . ..+.. .+...+..-.+...+.. .+...-......+.... .....+
T Consensus 156 ~~---~p~~--l----~~~l~---d~r~m~a~~~l~~~~~~----~~~~~~~~~~~~~~~p~-----~~~~~~~~~~~d~ 214 (539)
T KOG0548|consen 156 QK---NPTS--L----KLYLN---DPRLMKADGQLKGVDEL----LFYASGIEILASMAEPC-----KQEHNGFPIIEDN 214 (539)
T ss_pred hc---CcHh--h----hcccc---cHHHHHHHHHHhcCccc----cccccccccCCCCCCcc-----cccCCCCCccchh
Confidence 11 0110 0 00000 11111111111000000 00000000000000000 000000
Q ss_pred --------CcchHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 250 --------DVLTWTTMVSGYAKLGDMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 250 --------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
-......+.++..+..+++.|++.+....+- ++.-++....+|...|.+.++...-....+.|- -...-
T Consensus 215 ~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad 293 (539)
T KOG0548|consen 215 TEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRAD 293 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHH
Confidence 1123455667777778888888888776553 444567777888888888887777776665542 11222
Q ss_pred HHH-------HHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCc-chHHHH
Q 007400 320 FSS-------CLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENS-MLWNTM 390 (605)
Q Consensus 320 ~~~-------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~l 390 (605)
|+. +..++.+.++++.+...|.+.+.....|+ ...+....+++....+...- .|.. .-...-
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~k 364 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREK 364 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 222 33456667888999999988776543432 22333445555555543321 1222 112223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA 468 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 468 (605)
...+.+.|++..|+..|.+++... | |...|.....+|.+.|.+..|+.-.+..+ ...|+ ...|..=+.++...
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i---eL~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCI---ELDPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHH
Confidence 566888999999999999999964 5 66799999999999999999999888877 45666 55666666667777
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 007400 469 GCSDQLMNQLEKMP-YEHDSYLWNALHGVCRIH-GNIDMGRKVVDQ 512 (605)
Q Consensus 469 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~ 512 (605)
.++++|.+.|++.. ..|+..-+..-+.-|..+ .......++.++
T Consensus 440 k~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 440 KEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 78999999998863 344443333333333332 223334444444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-05 Score=81.86 Aligned_cols=358 Identities=12% Similarity=0.086 Sum_probs=191.2
Q ss_pred CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 007400 148 RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI--SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSS 225 (605)
Q Consensus 148 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 225 (605)
.|+...+..+.++...+-+.+-++++++..-.+- .-+...-+.++-...+ -+..+..++.+++-..+. |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------
Confidence 4666667777888888888888888887653111 1111122223322222 233333344333322111 11
Q ss_pred HHHHHHhcCChHHHHHHHhhcCC-------------------------CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007400 226 IVDAYAKCGELSDARRLFDETDA-------------------------RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280 (605)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 280 (605)
+.......+-+++|..+|++..- ..+..|+.+..+-.+.|...+|++-|-+. .
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--d 1131 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--D 1131 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--C
Confidence 22233334444455544444321 02344555555555555555555554333 2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
|+..|.-++....+.|.+++-..++....+..-.|... +.++-+|++.+++.+.+.++ ..|+..-...+.+
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGD 1202 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhH
Confidence 33445555555555555555555555554444344333 23455555555544433332 1344444445555
Q ss_pred HHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLT 440 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 440 (605)
-+...|.++.|.-+|. ++..|..|...+...|++..|...-++. .+..||..+-.+|...+.+.-|.
T Consensus 1203 rcf~~~~y~aAkl~y~------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ- 1269 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYS------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ- 1269 (1666)
T ss_pred HHhhhhhhHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-
Confidence 5555555555555554 5555677777777777777776654432 24557777777777766654442
Q ss_pred HHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 007400 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-- 516 (605)
Q Consensus 441 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 516 (605)
|- -.++....+-...|+..|...|.+++.+.+++.. +. +.....|.-|+-.|.+- +.++-.+.++-....
T Consensus 1270 ----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvN 1343 (1666)
T KOG0985|consen 1270 ----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVN 1343 (1666)
T ss_pred ----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc
Confidence 22 1122334556677888888888888888888764 21 23344555565555543 355555555544443
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 517 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
-| .+.+++..+-.|.+..-++.+..+.
T Consensus 1344 ip-------KviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1344 IP-------KVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred hH-------HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 23 4667777777888887777766554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.9e-09 Score=97.84 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=162.5
Q ss_pred hcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHH
Q 007400 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIR 405 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~ 405 (605)
.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+ +.|......|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566777777777777665 55667777777777777777777777765442 2256677777778888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHH-----------HHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHH
Q 007400 406 LFHDMVRSSVKPDKITLAVIL-----------NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 406 ~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 474 (605)
.++.-+... |- |..+. ..+..........++|-.+....+..+|+++...|.-.|.-.|++++|
T Consensus 375 ~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 888776532 11 00110 122223334555666666654556668889999999999999999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 475 MNQLEKM-PYE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 475 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+.|+.. .++ .|...|+.|+..++...+.++|+..|.+++++.|.-..+.+.|+..|...|.|.+|...|=.+..
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999986 344 46789999999999999999999999999999999999999999999999999999998876654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-05 Score=85.68 Aligned_cols=323 Identities=11% Similarity=0.025 Sum_probs=205.7
Q ss_pred HHHhcCChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCC----C----C----hhhHHHHHHHH
Q 007400 229 AYAKCGELSDARRLFDETDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPE----K----N----PVSWTTLIAGY 292 (605)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~----~----~~~~~~l~~~~ 292 (605)
.....|+++.+...++.+.. .++.........+...|++++|..++..... . + ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 44556778877777776632 2333334445556678888888887765421 1 1 11222334456
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhcccchHHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHH
Q 007400 293 TRNGLGQKALELFTRMMILRIRPNQ----HTFSSCLCACASIVSLKHGKQVHGFLIRTNF---RS--NTIVMSSLIDMYS 363 (605)
Q Consensus 293 ~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 363 (605)
...|++++|...+++....-...+. .....+...+...|+++.|...+.+.....- .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987763111121 2334455566778999999998888764311 11 1234455677788
Q ss_pred hcCChHHHHHHHHhcCC------CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHH
Q 007400 364 KCGCLNDGRQVFDLTDN------KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSS--VKPD--KITLAVILNAC 429 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~~------~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~l~~~~ 429 (605)
..|+++.|...+++... .++ ...+..+...+...|++++|...+++..... ..+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999888775321 111 1234455566777899999999988876531 1122 23455566677
Q ss_pred hccCcHHHHHHHHHHchHhhCCC-CCHH--HH--HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHH
Q 007400 430 THSGLVQEGLTYFESMTHDLGII-PNQE--HH--ACLIELLAQAGCSDQLMNQLEKMPYE--HDS----YLWNALHGVCR 498 (605)
Q Consensus 430 ~~~g~~~~a~~~~~~~~~~~~~~-p~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~ 498 (605)
...|+++.|...++.+..-.... .... .. ......+...|+.+.|..++...... ... ..+..++.++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999988875221111 1111 10 11224455688999999998775311 111 11345677788
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 499 IHGNIDMGRKVVDQLIDQN------PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..|++++|...++++++.. +....++..++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999998762 1123467788999999999999999998887643
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-08 Score=93.63 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=93.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH----Hhc
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL----AQA 468 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~ 468 (605)
.+...|++++|++++++. .+.......+.++.+.++++.|.+.++.|. .+..|. +...|..++ .-.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcH-HHHHHHHHHHHHHhCc
Confidence 344556777766665431 244555666667777777777777777766 334442 222233322 222
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc-hHHHHHHH
Q 007400 469 GCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG-RLVEKVRQ 545 (605)
Q Consensus 469 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 545 (605)
+.+.+|..+|+++. ..+++.+.+.++.+....|++++|.++++++++.+|.++.++..++.+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 35777777777763 3466777777888888888888888888888888888888888888888888887 55666777
Q ss_pred HHHh
Q 007400 546 LINE 549 (605)
Q Consensus 546 ~~~~ 549 (605)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-05 Score=75.89 Aligned_cols=158 Identities=13% Similarity=0.140 Sum_probs=84.4
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCC-chHHHHHHHHHHccCChHHHHHHH
Q 007400 64 ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKN-LFSYNNMLSGYANLGMMKHARNLF 142 (605)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~ 142 (605)
..|.+++|..+|.+-. -|..|-..|-..|.+++|.++-+.-.+-. ..||-.....+-..++++.|++.|
T Consensus 812 eLgMlEeA~~lYr~ck----------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCK----------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHH----------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 3455555555555443 23333444455566666666554443211 235555566666666777777777
Q ss_pred hhcCC-----------------------CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 007400 143 DNMAE-----------------------RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199 (605)
Q Consensus 143 ~~~~~-----------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 199 (605)
++... +|...|..-...+-..|+.+.|+.+|...+. |-++.+..+-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 66432 1333333333333444555555555554443 444555555566
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 007400 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246 (605)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (605)
+.++|-++-++- -|......|.+.|-..|++.+|...|.+.
T Consensus 953 k~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 953 KTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred CchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666666655432 24445555667777777777777666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-06 Score=77.08 Aligned_cols=307 Identities=12% Similarity=0.074 Sum_probs=186.3
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH---HHHhccCChHHHHHHHHHHHHhCCCCChhHH-HHHH
Q 007400 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL---TICVKLEELKLTRQVHGQVLVTGFLSNVVIS-SSIV 227 (605)
Q Consensus 152 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 227 (605)
-..-+...+..+|++..|+..|....+ .|+..|.++. ..|...|+...|..=+..+++. +||-..- -.-.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 334455566666777777777766655 3334444433 3455556666666655555543 3443221 1123
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007400 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307 (605)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 307 (605)
..+.+.|.++.|..-|+.+...++.. |...+|..-+..+. ........+..+...|+...|++....
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~-----------~~~~eaqskl~~~~--e~~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSN-----------GLVLEAQSKLALIQ--EHWVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHHhHH--HHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 34556666666666665554432210 00000000000000 001122234455667888888888888
Q ss_pred HHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCcch
Q 007400 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENSML 386 (605)
Q Consensus 308 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 386 (605)
+++. .+.|...|..-..+|...|.+..|..-++...+.. ..+...+--+-..+...|+.+.++...++... .||...
T Consensus 181 llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 181 LLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 8774 25677777777788888888888887777776654 34455555666777788888888777776443 233321
Q ss_pred ----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHchHhhC
Q 007400 387 ----WNTM---------ISALTQHGYDEQAIRLFHDMVRSSVKPDK---ITLAVILNACTHSGLVQEGLTYFESMTHDLG 450 (605)
Q Consensus 387 ----~~~l---------~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 450 (605)
|..+ +......++|.++++..+...+....... ..+..+-.++...|++.+|++...++. .
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~ 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---D 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---h
Confidence 1111 12245578888888888888875322112 245556667788899999999999988 7
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 451 IIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 451 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
+.|+ +.++..-..+|.-...++.|+.-|++..
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7887 8888888899999999999999998874
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-05 Score=78.24 Aligned_cols=183 Identities=9% Similarity=0.041 Sum_probs=96.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239 (605)
Q Consensus 160 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (605)
....|.+++|..+|++.++ |..+=+.|-..|.+++|.++-+.--.. . =..||..-..-+-..++.+.|
T Consensus 810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHH
Confidence 3455666777777766665 233334455566666666654422111 1 123444444445556667777
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 240 RRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 240 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
++.|++...+-...+..|. .+........+++.+ ...|.-..+.+-..|+.+.|+.+|....+
T Consensus 878 leyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------- 940 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSSAKD--------- 940 (1416)
T ss_pred HHHHHhcCChHHHHHHHHH------hChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence 7766665433221111111 111222233333332 23344444455566777777777776553
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 377 (605)
|-.+++..|-+|+.++|.++-++ .-|....-.|.+.|...|++.+|...|.+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34455556666777777666443 22444555667777777777777777653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-06 Score=83.16 Aligned_cols=260 Identities=10% Similarity=-0.054 Sum_probs=153.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHh----cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACA----SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 289 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
...+...|++++|...+++..+.. +.+...+.. ...+. ..+....+.+.+.. .....+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 345566788888888888877642 223323331 11222 23444444444443 111112223344456667888
Q ss_pred cCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHHH
Q 007400 365 CGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV-KPDK--ITLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 439 (605)
.|++++|.+.++.... +.+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888886543 22456677788888888999999988888776422 1222 24556777888889999999
Q ss_pred HHHHHchHhhCCCCCHHHH-H--HHHHHHHhcCChHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007400 440 TYFESMTHDLGIIPNQEHH-A--CLIELLAQAGCSDQLMNQ---LEKM----PYEHDSYLWNALHGVCRIHGNIDMGRKV 509 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 509 (605)
.+++++.......+..... . .+...+...|....+.++ .... ............+.++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9998875221111222111 1 233334444533322222 1111 1111112222456677788999999999
Q ss_pred HHHHHhcC-C--------CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 510 VDQLIDQN-P--------QSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 510 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++.+.... . .........+.++...|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 98887642 1 123455677888899999999999999887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-07 Score=84.18 Aligned_cols=181 Identities=11% Similarity=0.073 Sum_probs=120.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC-c---chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----
Q 007400 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN-S---MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI---- 420 (605)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---- 420 (605)
.....+..++..+...|+++.|...|+.+... |+ . .++..+..++...|++++|...++++++. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 34556666777777888888888888765432 22 1 35566777778888888888888888773 34321
Q ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 007400 421 TLAVILNACTHS--------GLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWN 491 (605)
Q Consensus 421 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 491 (605)
++..+..++... |+++.|...++.+.. ..|+. .....+..... .... . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~~~~----~~~~---~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKRMDY----LRNR---L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHHHHH----HHHH---H--------HHHHH
Confidence 455555555543 667778888877772 23432 22211111100 0000 0 01123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++..+...|++++|...++++++..|+++ ..+..++.++...|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566778899999999999999999977654 68899999999999999999999988654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.1e-07 Score=87.84 Aligned_cols=226 Identities=15% Similarity=0.091 Sum_probs=147.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CChhHHHHHHHHH
Q 007400 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR-SNTIVMSSLIDMY 362 (605)
Q Consensus 284 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 362 (605)
....+.+++...|+++.++. ++.... .|.......+...+...++-+.+..-++........ .+..+......++
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 34455667777787765543 332222 566666655555555444444444444433333322 2333333444567
Q ss_pred HhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCcHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT----HSGLVQEG 438 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~~a 438 (605)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++. ..+.+.+|
T Consensus 113 ~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~e~~~~A 186 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGGEKYQDA 186 (290)
T ss_dssp CCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTTTCCCHH
T ss_pred HHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCchhHHHH
Confidence 7789999988888765 2566677788889999999999999999987 3444 34444444433 23468999
Q ss_pred HHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 007400 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNI-DMGRKVVDQLID 515 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 515 (605)
..+|+++. + ...+++.+.+.+..+....|++++|.+++++. . .+.++.++..++.+....|+. +.+.+++.++..
T Consensus 187 ~y~f~El~-~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 187 FYIFEELS-D-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHH-C-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHH-h-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999987 3 45678888999999999999999999999875 2 334566777788777788877 677888888888
Q ss_pred cCCCCC
Q 007400 516 QNPQSS 521 (605)
Q Consensus 516 ~~p~~~ 521 (605)
..|+++
T Consensus 265 ~~p~h~ 270 (290)
T PF04733_consen 265 SNPNHP 270 (290)
T ss_dssp HTTTSH
T ss_pred hCCCCh
Confidence 888644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.7e-08 Score=79.24 Aligned_cols=121 Identities=10% Similarity=0.035 Sum_probs=78.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 007400 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP- 482 (605)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 482 (605)
.++++.++ +.|+. +..+..++...|++++|...|+.+. ...|+ ...+..+..++.+.|++++|...|++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44555555 34443 3345566667777777777777766 34443 5666677777777777777777776652
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 483 -YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 483 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
.+.+...+..++.++...|++++|...|+++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 23456667777777777777777777777777777777777766666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-07 Score=79.32 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=110.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCC
Q 007400 392 SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGC 470 (605)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 470 (605)
..|...|+++.+....+.+.. |. ..+...++.+++...++... ...| +...|..|...|...|+
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L---~~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKI---RANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCCC
Confidence 457788888876544433221 11 01223566777777777776 3344 47888899999999999
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007400 471 SDQLMNQLEKMP--YEHDSYLWNALHGVC-RIHGN--IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 471 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
+++|...+++.. .+.+...+..++.++ ...|+ .++|.++++++++.+|++..++..++.++.+.|++++|+..|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998862 345677888888864 67677 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 007400 546 LINERQ 551 (605)
Q Consensus 546 ~~~~~~ 551 (605)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997753
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.4e-06 Score=80.55 Aligned_cols=194 Identities=13% Similarity=0.072 Sum_probs=105.8
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCc--chHHHHHHHHH
Q 007400 322 SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENS--MLWNTMISALT 395 (605)
Q Consensus 322 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~l~~~~~ 395 (605)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++..... ++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 44455566677777777777776655 444556666777777777777777777754421 121 23445667777
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhccCcHHHHHHH--HHHchHhhCC-CCCHHHHHHHHHHHHhc
Q 007400 396 QHGYDEQAIRLFHDMVRSSV-KPDKITL-A--VILNACTHSGLVQEGLTY--FESMTHDLGI-IPNQEHHACLIELLAQA 468 (605)
Q Consensus 396 ~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~--~~~~~~~~~~-~p~~~~~~~l~~~~~~~ 468 (605)
..|++++|..++++...... .+..... . .++.-+...|....+.++ +......... ............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 78888888888877754321 1111111 1 222223333322222222 1111101000 11111222456667788
Q ss_pred CChHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 469 GCSDQLMNQLEKMP--YEH---D------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 469 g~~~~A~~~~~~~~--~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
|+.++|..+++.+. ... . .........++...|+.+.|.+.+..++..
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888887652 011 1 122223344566889999999999988875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.7e-05 Score=85.45 Aligned_cols=253 Identities=14% Similarity=0.104 Sum_probs=116.6
Q ss_pred HHHhcCChHHHHHHHhhcCC--C--Cc----chHHHHHHHHHhcCChHHHHHHHhhCCC-------C--ChhhHHHHHHH
Q 007400 229 AYAKCGELSDARRLFDETDA--R--DV----LTWTTMVSGYAKLGDMESASKLFNEMPE-------K--NPVSWTTLIAG 291 (605)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~--~--~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~ 291 (605)
.+...|++++|...+++... + +. ...+.+...+...|++++|...+.+... + ...++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 34455555555555544322 1 11 1223333444555666665555554431 1 11233444555
Q ss_pred HHhCCChHHHHHHHHHHHH----CCCC--C-ChHHHHHHHHHHhcccchHHHHHHHHHHHHcC--CCC--ChhHHHHHHH
Q 007400 292 YTRNGLGQKALELFTRMMI----LRIR--P-NQHTFSSCLCACASIVSLKHGKQVHGFLIRTN--FRS--NTIVMSSLID 360 (605)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~----~g~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 360 (605)
+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 5666666666666655443 1111 1 11223333444455566666666665554321 111 1223333455
Q ss_pred HHHhcCChHHHHHHHHhcC----CCCCcchHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTD----NKENSMLWN-----TMISALTQHGYDEQAIRLFHDMVRSSVKPDK---ITLAVILNA 428 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~----~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~ 428 (605)
.+...|+++.|.+.++... .......+. ..+..+...|+.+.|..++............ .....+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 5666666666666555432 110111110 1122334456666666665554331111110 113345555
Q ss_pred HhccCcHHHHHHHHHHchHh---hCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 429 CTHSGLVQEGLTYFESMTHD---LGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
+...|++++|...++++... .+..++ ..+...+..++.+.|+.++|...+.+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666665421 122222 334555566666667766666666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-05 Score=82.19 Aligned_cols=176 Identities=11% Similarity=-0.011 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC---CchHHHHHHHHHHccCChHHHHHHHhh
Q 007400 68 LKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK---NLFSYNNMLSGYANLGMMKHARNLFDN 144 (605)
Q Consensus 68 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~ 144 (605)
...+...+-+.++.. +.-...|..|...|...-+...|...|+...+- +..++....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444555444444443 333336778888888888888888888887753 456778888889999999988888443
Q ss_pred cCCCCc-----eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 007400 145 MAERDV-----VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN 219 (605)
Q Consensus 145 ~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 219 (605)
..+.+. ..|-...-.|...+++..++.-|+...+..+ -|...|..+..+|.+.|.+..|.++|.+.....+. +
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-S 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-h
Confidence 333211 2233344456677888888888888877332 36667888888999999999999988877654322 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhcC
Q 007400 220 VVISSSIVDAYAKCGELSDARRLFDETD 247 (605)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 247 (605)
...--......+..|.+.+|...+..+.
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111223334566788888887776654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=78.27 Aligned_cols=107 Identities=8% Similarity=-0.031 Sum_probs=92.7
Q ss_pred HHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.++++.. .+.|+. +..+...+...|++++|...|+... .+.+...|..++.++...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4555555 445553 5567888999999999999999862 34578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 518 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
|+++..+..++.++...|++++|+..++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987753
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.4e-07 Score=85.82 Aligned_cols=246 Identities=15% Similarity=0.102 Sum_probs=173.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007400 291 GYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370 (605)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (605)
-+.+.|+..+|.-.|+...+.. +-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 4566777777777777766653 3455567777777777777777777777777765 5566777777777888888888
Q ss_pred HHHHHHhcCC-CC----------CcchHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007400 371 GRQVFDLTDN-KE----------NSMLWNTMISALTQHGYDEQAIRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 371 A~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a 438 (605)
|...++.... +| +...-.. ..+..........++|-++. ..+..+|+.....|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 8877775321 10 0000000 11111122334445555544 444447888888888889999999999
Q ss_pred HHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 439 LTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
...|+.+. .+.|+ ..+|+.|+..++...+.++|++.|.++ ..+|. +.++..|+..|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 67887 679999999999999999999999986 45665 66888899999999999999999999998
Q ss_pred cCCC-----C-----CchHHHHHHHHHhcCCchHHHHH
Q 007400 516 QNPQ-----S-----SATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 516 ~~p~-----~-----~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
+.+. . ..+|..|=.++...++.|-+.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 7443 1 24666676777777777655444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-06 Score=92.35 Aligned_cols=201 Identities=10% Similarity=0.140 Sum_probs=164.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007400 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKIT 421 (605)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 421 (605)
|.+...|-..|......++.+.|++++++....- -...|.+++.....-|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 5566778888888899999999999988755331 2346888888888888888999999999883 222347
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 007400 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEH---DSYLWNALHGVC 497 (605)
Q Consensus 422 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~ 497 (605)
|..|...|.+.+.+++|.++++.|.++.+ -....|..++..+.++.+-++|..++++. ..-| -.......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88889999999999999999999997666 45678888999999999999999999875 2222 344556667777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
.+.|+.++++.+|+..+...|.....|..+++.-.+.|+.+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 88999999999999999999999999999999999999999999999999887654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.4e-07 Score=72.59 Aligned_cols=96 Identities=7% Similarity=-0.043 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
.+....+...+...|++++|..+|+-.. .+.+...|..|+.+|...|++++|+..|.++..++|+++.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4566677778889999999999998763 34578889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007400 533 ALGKGRLVEKVRQLINER 550 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~~ 550 (605)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988664
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-06 Score=90.43 Aligned_cols=136 Identities=11% Similarity=0.086 Sum_probs=113.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
++..+..|.....+.|+.++|..+++...+ +.|+.. ....++.++.+.+++++|....++.. ...|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 577888888899999999999999999998 678654 77888888999999999999999988 55676 667788
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
+..++.+.|++++|.++|++.. .+.+..++..++.++...|+.++|...|+++++...+-...
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 8889999999999999999873 33447888889999999999999999999999985433333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00039 Score=66.66 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=119.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCChHHHHHHH
Q 007400 297 LGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS-NTIVMSSLIDMYSKCGCLNDGRQVF 375 (605)
Q Consensus 297 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 375 (605)
..+.....+++++..-..--..+|...+....+...+..|+.+|.++.+.+..+ ++.+.++++..||. ++.+.|.++|
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 366667777777653322233466777777788888899999999998877665 77778888887775 7788889998
Q ss_pred HhcC-CCCCcchH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchHhhC-
Q 007400 376 DLTD-NKENSMLW-NTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLG- 450 (605)
Q Consensus 376 ~~~~-~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 450 (605)
+.-. .-+|...| ...+..+...|+-..+..+|++.+..++.|+. ..|..++.--..-|+...+..+-++......
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 8533 33455443 45667777888888899999998888666654 5888888888888888888888777653222
Q ss_pred -CCCCHHHHHHHHHHHHhcCCh
Q 007400 451 -IIPNQEHHACLIELLAQAGCS 471 (605)
Q Consensus 451 -~~p~~~~~~~l~~~~~~~g~~ 471 (605)
..+....-..+++.|.-.+.+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 222222333344445444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-06 Score=85.95 Aligned_cols=221 Identities=12% Similarity=-0.011 Sum_probs=166.7
Q ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-CCCCcchHHHHHH
Q 007400 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD-NKENSMLWNTMIS 392 (605)
Q Consensus 314 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~ 392 (605)
+|--..-..+...+.+.|-...|..++++.. .+..++.+|...|+..+|..+..... .+|++..|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3333344455666777788888888877653 45567888888888888888776544 4678888888887
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCCh
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCS 471 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 471 (605)
......-+++|.++.+..... .-..+.......++++++...|+.-. .+.|- ..+|..+.-+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhh
Confidence 777766777787777654332 11222222344688899999888766 34443 67888888889999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 472 DQLMNQLEKM-PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 472 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..|.+.|... ...| +...|+.+..+|.+.|+-.+|...++++++.+-++..+|.....+..+.|.|++|.+.++.+..
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999876 2344 5779999999999999999999999999999888899999999999999999999999998876
Q ss_pred CCCc
Q 007400 550 RQFK 553 (605)
Q Consensus 550 ~~~~ 553 (605)
....
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 5443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.8e-06 Score=76.04 Aligned_cols=210 Identities=10% Similarity=0.056 Sum_probs=128.6
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCH--HHHHHH
Q 007400 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG-CLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYD--EQAIRL 406 (605)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~--~~a~~~ 406 (605)
..++|.....++++.+ +-+..+|+....++...| ++++++..++.+... .+..+|+-....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444433 223333443333444444 356666666554321 1444555544444455542 566777
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc---CCh----HHHHHH
Q 007400 407 FHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA---GCS----DQLMNQ 477 (605)
Q Consensus 407 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~----~~A~~~ 477 (605)
++++++ ..| |..+|.....++...|+++++++.++++++ ..|+ ...|+....++.+. |.. +++++.
T Consensus 131 ~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 131 TRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 777777 344 556777777777778888888888888872 2333 55566555555444 222 355555
Q ss_pred HHhC-C-CCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC----------------
Q 007400 478 LEKM-P-YEHDSYLWNALHGVCRIH----GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG---------------- 535 (605)
Q Consensus 478 ~~~~-~-~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 535 (605)
..++ . .+.|...|+.+.+.+... ++..+|.+.+.++++..|.++.++..|+++|....
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 5443 2 345677888888888763 45577999999998889989999999999998643
Q ss_pred --CchHHHHHHHHH
Q 007400 536 --KGRLVEKVRQLI 547 (605)
Q Consensus 536 --~~~~a~~~~~~~ 547 (605)
..++|..+++.+
T Consensus 286 ~~~~~~a~~~~~~l 299 (320)
T PLN02789 286 LSDSTLAQAVCSEL 299 (320)
T ss_pred cccHHHHHHHHHHH
Confidence 236688888877
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-06 Score=73.01 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=109.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 467 (605)
..+...+...|+-+....+....... ..-|.......+....+.|++..|...++++. . .-++|...++.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~-l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R-LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c-cCCCChhhhhHHHHHHHH
Confidence 45556666677777776666664432 12244455557777777788888888887776 2 334457778888888888
Q ss_pred cCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007400 468 AGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 468 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
.|+++.|..-|.+. . ...++...+.++..+.-.|+.+.|+.++..+....+.+..+-..|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888887777664 2 234566777787788888888888888888887777777888888888888888888877664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-06 Score=73.35 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=117.1
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007400 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 359 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 438 (605)
+-.|...|+++.+....+.+..+.. .+...++.+++...+++.++.+ +.|...|..+...|...|+++.|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4467788888776555443332211 1223567788888888888842 33667999999999999999999
Q ss_pred HHHHHHchHhhCCCCC-HHHHHHHHHHH-HhcCC--hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 439 LTYFESMTHDLGIIPN-QEHHACLIELL-AQAGC--SDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
...|++.. .+.|+ ...+..+..++ .+.|+ .++|.+++++.. .+.+..++..++..+...|++++|+..|++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998 55665 77888888864 67777 599999999863 345778889999999999999999999999
Q ss_pred HHhcCCCCCchHH
Q 007400 513 LIDQNPQSSATHG 525 (605)
Q Consensus 513 ~~~~~p~~~~~~~ 525 (605)
+++..|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999876655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.3e-06 Score=72.49 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=114.3
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 007400 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM--PYEHDSYLWNA 492 (605)
Q Consensus 415 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~ 492 (605)
..|+......+..++...|+-+....+..... . ....+......+++...+.|++..|...+.+. ..++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~-~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSA-I-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhh-c-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 35643333667777888888888888887764 1 33344667777999999999999999999997 35789999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++.+|.+.|+++.|...|.+++++.|.++.....++..|.-.|++++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999886654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0011 Score=67.79 Aligned_cols=511 Identities=11% Similarity=0.046 Sum_probs=273.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh--hhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHH
Q 007400 22 QSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQC--AESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYF 99 (605)
Q Consensus 22 ~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 99 (605)
.-+...+..+++..|+.-.+++.+.. |+. .|..++.++ .+.|..++|..+++.....++. +.. +...+-.+|.
T Consensus 14 rpi~d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~-tLq~l~~~y~ 88 (932)
T KOG2053|consen 14 RPIYDLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDL-TLQFLQNVYR 88 (932)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chH-HHHHHHHHHH
Confidence 44456677899999999999988754 443 366666665 4789999999998888766655 444 8999999999
Q ss_pred hcCChhHHHHHhccCCC--CCchHHHHHHHHHHccCCh----HHHHHHHhhcCCCCceeHHHHHHHHHhc-CCh------
Q 007400 100 KCGSDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMM----KHARNLFDNMAERDVVSWNTMIIGYAKS-GAV------ 166 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~------ 166 (605)
+.|..++|..+|++..+ |+..-...+..+|.+.+.+ ..|.+++...++.--..|+. ++...+. ...
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDP 167 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccc
Confidence 99999999999999986 4444444555666666655 45777777666543334433 3333222 122
Q ss_pred ---HHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCChHHHHHHHHHH-HHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007400 167 ---EEGLKFYKVLRRFS-ISCNEFSFAGILTICVKLEELKLTRQVHGQV-LVTGFLSNVVISSSIVDAYAKCGELSDARR 241 (605)
Q Consensus 167 ---~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 241 (605)
.-|...++.+.+.+ ---+..-...-+..+...+++++|..++.-- .+.-..-+...-+.-+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 23444555555443 1122222333344556788899999998433 333333445555667788888999988888
Q ss_pred HHhhcCCCCcchHHHHHHH----------------HHhcCChHHHHHHHhhCCCC-ChhhHHHHHHHHH---hCCChHHH
Q 007400 242 LFDETDARDVLTWTTMVSG----------------YAKLGDMESASKLFNEMPEK-NPVSWTTLIAGYT---RNGLGQKA 301 (605)
Q Consensus 242 ~~~~~~~~~~~~~~~li~~----------------~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~g~~~~a 301 (605)
+..++...+..-|...+.. +...+..+...+...+.... ....|-+-+.... .-|+.+++
T Consensus 248 l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~ 327 (932)
T KOG2053|consen 248 LSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEM 327 (932)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHH
Confidence 8777766533224433332 22223333333333333221 2223333333333 33677766
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC--Ch---hHHHHHHHHHHhcCCh-----HHH
Q 007400 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS--NT---IVMSSLIDMYSKCGCL-----NDG 371 (605)
Q Consensus 302 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~l~~~~~~~g~~-----~~A 371 (605)
...|-+- -|..|-. ..=+..|...=..+.-..++.......... +. ..+.+.+..-.-.|.+ +.-
T Consensus 328 ~~~y~~k--fg~kpcc---~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 328 LSYYFKK--FGDKPCC---AIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred HHHHHHH--hCCCcHh---HhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHH
Confidence 5444321 2222211 111111111111122222222222111000 00 0011122222222211 111
Q ss_pred HHHHHh----cCC------C--CCcc---------hHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCC-CHHHHHHHH
Q 007400 372 RQVFDL----TDN------K--ENSM---------LWNTMISALTQHGYDE---QAIRLFHDMVRSSVKP-DKITLAVIL 426 (605)
Q Consensus 372 ~~~~~~----~~~------~--~~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~p-~~~~~~~l~ 426 (605)
...+.+ ... . |+.. +-+.|+..+.+.++.. +|+-+++.-... .| |..+-..++
T Consensus 403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLi 480 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHH
Confidence 222211 110 0 1111 3456777788887766 455555555553 33 556777788
Q ss_pred HHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP---YEHDSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~ 503 (605)
+.|.-.|-...|...|+.+.-+ .+..|...| .+...+...|++..+...+.... ...-..+-..++.+| +.|.+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~y 557 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIK-NIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAY 557 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchH-HhhhccchH-HHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCch
Confidence 8898889999999999888633 666664433 24455667778887777776542 011122222333343 55666
Q ss_pred HHHHHHHHHHHhcCC----CCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 504 DMGRKVVDQLIDQNP----QSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.+-.++..-=-++.- .-..+-....+.+...++.++-...+..+.
T Consensus 558 SkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 558 SKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 655544322112211 112233356666677777777777776554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-06 Score=83.83 Aligned_cols=190 Identities=12% Similarity=0.132 Sum_probs=160.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007400 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVIL 426 (605)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 426 (605)
+++|-...-..+...+...|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+..+ -+|++..|..++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 34566666778889999999999999999954 4567788899999999999999998888 478999999999
Q ss_pred HHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PY-EHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~ 504 (605)
+......-++.|.++.+....+ .-..+.....+.+++.++.+.++.- .. +....+|..++.+..+.+++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 9988888899999998876522 2223334445689999999999874 33 346789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
.|...|...+.++|++...|+.+..+|.+.|+..+|...+++..+.+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999999988763
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-06 Score=72.40 Aligned_cols=101 Identities=18% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
...|+ ......++..+...|++++|.+.+++.. .+.+...|..++..+...|++++|...++++++..|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34454 4455666777777888888888777752 24467777788888888888888888888888888888888888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007400 527 LSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.+|...|++++|...++...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888889988888888877764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.7e-06 Score=75.98 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=129.3
Q ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC-cc---
Q 007400 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT---IVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN-SM--- 385 (605)
Q Consensus 314 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~--- 385 (605)
......+..+...+...|+++.|...++.+.+.. +.+. ..+..+..++...|++++|...++.+... |+ ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3445677778888999999999999999998865 2222 46677889999999999999999987532 32 22
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHH
Q 007400 386 LWNTMISALTQH--------GYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456 (605)
Q Consensus 386 ~~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 456 (605)
++..+..++... |+.++|.+.++++... .|+.. ....+..... ... ... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH---------H
Confidence 455566666654 7889999999999984 56543 2222211100 000 000 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP----YE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
....+...|.+.|++++|...+++.. .. .....+..++.++...|++++|..+++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 12256677889999999999888762 12 2356888899999999999999999988877666
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-05 Score=67.04 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCC-CCcchHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENSMLWNT-MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 431 (605)
+|..++-+....|+.+.|..+++.+..+ |.+.-... -.-.+-..|++++|+++++.+++.+ +.|..++..-+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3445555666677777777777765543 22221111 1223556789999999999998864 3355677766666667
Q ss_pred cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC---CHHHH
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-Y-EHDSYLWNALHGVCRIHG---NIDMG 506 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g---~~~~A 506 (605)
.|+.-+|++-+.... + .+.-|.+.|..+...|...|++++|.-.++++. . +.++..+..++..+.-.| +.+.|
T Consensus 133 ~GK~l~aIk~ln~YL-~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYL-D-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHH-H-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777778888887777 3 567789999999999999999999999999873 3 345666666776655443 78899
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 507 RKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+++|.+++++.|.+...+..+..++
T Consensus 211 rkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHHHHHH
Confidence 9999999999997666666554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-05 Score=81.51 Aligned_cols=143 Identities=8% Similarity=0.028 Sum_probs=115.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 007400 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLA 423 (605)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~ 423 (605)
..+.+...+..|.....+.|.+++|..+++.+.. .| +...+..++..+.+.+++++|+..+++... ..|+ .....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3466788889999999999999999999997663 34 456778888899999999999999999998 4665 45777
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALH 494 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 494 (605)
.+..++.+.|++++|..+|+++.. ..|+ ..++..+..++...|+.++|...|++.- ..+....|+.++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 888888999999999999999983 3444 7788999999999999999999998862 234455554443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-05 Score=81.94 Aligned_cols=216 Identities=14% Similarity=0.160 Sum_probs=144.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhcCCC--------CcchHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhhHHHH
Q 007400 219 NVVISSSIVDAYAKCGELSDARRLFDETDAR--------DVLTWTTMVSGYAKLGDMESASKLFNEMPEK--NPVSWTTL 288 (605)
Q Consensus 219 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l 288 (605)
....|-.-|......+++++|+++.++.... -...|.++++.....|.-+...++|++..+- ....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3456666777777778888888777776543 2245777777766677777777778777653 23467777
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCC
Q 007400 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR-SNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 289 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 367 (605)
...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++++.-.+ .........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 88888888888888888888764 2345567777777777777778888888777765322 134445555666677777
Q ss_pred hHHHHHHHHhcCCC-C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcH
Q 007400 368 LNDGRQVFDLTDNK-E-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLV 435 (605)
Q Consensus 368 ~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~ 435 (605)
.+.++.+|+..... | -...|+..|+.-.++|+.+.+..+|++.+..++.|-. ..|...+..--..|+-
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 77777777765422 1 4556777777777777777777777777777766643 2444444433333443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-05 Score=73.07 Aligned_cols=187 Identities=12% Similarity=0.067 Sum_probs=140.7
Q ss_pred HHHHhcCChHHHHHHHHhcCCC-C-CcchHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH
Q 007400 360 DMYSKCGCLNDGRQVFDLTDNK-E-NSMLWNTMISALTQHG-YDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLV 435 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 435 (605)
..+...+..++|+.+++.+... | +..+|+.....+...| ++++++..++++.+. .| +..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 3344557788888888875532 2 4556777777777777 679999999999985 44 445777666666666653
Q ss_pred --HHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CC----H
Q 007400 436 --QEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH---GN----I 503 (605)
Q Consensus 436 --~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~----~ 503 (605)
+.+..+++++. ...|. ..+|+....++.+.|+++++++.++++- ...+..+|+....++... |. .
T Consensus 123 ~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 67888888888 44554 7889999999999999999999999872 345677888777666554 22 3
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhc----CCchHHHHHHHHHHhCC
Q 007400 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSAL----GKGRLVEKVRQLINERQ 551 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~ 551 (605)
++++.+..++++.+|+|..+|..+..++... ++..+|.+.+..+...+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 5788889999999999999999999999883 45567888887765533
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-05 Score=80.81 Aligned_cols=128 Identities=9% Similarity=0.132 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 464 (605)
++..++.+|-+.|+.++|..+|+++++. .| |..+.+.+...|... +.++|.+++.++...
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------
Confidence 4455555555555555555555555553 23 344555555555555 555555555554411
Q ss_pred HHhcCChHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 465 LAQAGCSDQLMNQLEKMP----------------------YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
|...+++.++.++++++. ..--+.++.-+-..|...++++++..+++.+++.+|.|..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 223333334444333321 1112233444456677888999999999999999999999
Q ss_pred hHHHHHHHHH
Q 007400 523 THGLLSSIYS 532 (605)
Q Consensus 523 ~~~~l~~~~~ 532 (605)
+...++.+|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 9999999998
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-07 Score=52.93 Aligned_cols=32 Identities=38% Similarity=0.685 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 007400 215 GFLSNVVISSSIVDAYAKCGELSDARRLFDET 246 (605)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (605)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-05 Score=66.38 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=89.7
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 007400 406 LFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKM-P 482 (605)
Q Consensus 406 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 482 (605)
.+++.+. ..|+ ......+...+...|++++|...++.+.. ..| +...+..+..++...|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666 4554 34666777788888999999999988872 234 4778888899999999999999988876 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 483 -YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 483 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
.+.+...+..++..+...|++++|...++++++..|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 345677888889999999999999999999999999766543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.38 E-value=8e-06 Score=78.11 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=96.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCR 498 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 498 (605)
....|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+.- .+.+...+...+..|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4445555666677788888888887722 354 33456777777777778888777652 2346777777788899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
..++++.|+.+.+++.+..|++..+|..|+.+|.+.|+++.|+..+..+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=63.87 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=105.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHH----
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA---- 466 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~---- 466 (605)
+..|+..|++++|++..+... +......=+..+.+..+.+-|.+.+++|. .+. +..+.+.|..++.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq---~id-ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ---QID-EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccc-hHHHHHHHHHHHHHHhc
Confidence 345777888888887776511 22233333445566677788888888887 222 2344554555443
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH-H
Q 007400 467 QAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK-V 543 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~-~ 543 (605)
..+++.+|.-+|+++. .+|++.+.+..+.++...|++++|..+++.++..++.++.++..+..+-...|+-.++.+ .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3457888888888884 568888888888899999999999999999999999999999999888888898877644 3
Q ss_pred HHHHH
Q 007400 544 RQLIN 548 (605)
Q Consensus 544 ~~~~~ 548 (605)
+..+.
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00023 Score=61.98 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=84.3
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCc
Q 007400 359 IDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH----SGL 434 (605)
Q Consensus 359 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~ 434 (605)
...|+..|++++|++...... +......=...+.+..+.+-|...+++|.+ +. +..|.+.|..++.+ .+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~---~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE---NLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchh
Confidence 445556666666666655411 111222222334455566666667777665 22 44455555555432 345
Q ss_pred HHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007400 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNI-DMGRKVVD 511 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 511 (605)
+.+|.-+|+++. + ...|+..+.+....++...|++++|..++++.. ...++.+...++..-...|.. +--.+...
T Consensus 189 ~qdAfyifeE~s-~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELS-E-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHh-c-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 666777777765 2 356666666666666677777777777766652 234455555555444444433 33445555
Q ss_pred HHHhcCCCCC
Q 007400 512 QLIDQNPQSS 521 (605)
Q Consensus 512 ~~~~~~p~~~ 521 (605)
+.....|.++
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 6555566433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.8e-05 Score=70.02 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=106.8
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLI 462 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 462 (605)
..+......+...|++++|+..++.++.. .|+ ..........+...++.++|.+.++++. ...|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHH
Confidence 34444455566778888888888888874 554 4455566677888888888888888887 55666 55666778
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
.+|.+.|++.+|+..+++.. .+.|+..|..|+.+|...|+..++... .+..|.-.|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 88888888888888887752 456788888888888888887776544 34466677888888
Q ss_pred HHHHHHHHhCC
Q 007400 541 EKVRQLINERQ 551 (605)
Q Consensus 541 ~~~~~~~~~~~ 551 (605)
+..+....+..
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 88888776653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.7e-07 Score=51.57 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=15.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 007400 347 NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378 (605)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 378 (605)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=5e-05 Score=79.60 Aligned_cols=201 Identities=13% Similarity=0.024 Sum_probs=134.2
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCC
Q 007400 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGY 399 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 399 (605)
+..|+..+...+++++|.++.+...+.. +.....|-.+...+.+.++..++..+ .++.......+
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--------------~~l~~~~~~~~ 98 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--------------NLIDSFSQNLK 98 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--------------hhhhhcccccc
Confidence 3334444444444444444444333332 22333333344455555554444333 33344444555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 007400 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 478 (605)
+.-+..+...|.. ..-+...+..++.+|.+.|+.++|..+|+++. .+.|+ +.+.+.++..|... ++++|.+++
T Consensus 99 ~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L---~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 99 WAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLV---KADRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred hhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 6555555556666 23355689999999999999999999999999 34465 88999999999999 999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH--------------------HHHHHHHHhcCCch
Q 007400 479 EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH--------------------GLLSSIYSALGKGR 538 (605)
Q Consensus 479 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--------------------~~l~~~~~~~g~~~ 538 (605)
.+.. ..+...+++..+.++++++++.+|++...+ ..+-..|...++|+
T Consensus 173 ~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~ 240 (906)
T PRK14720 173 KKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWD 240 (906)
T ss_pred HHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhh
Confidence 8753 236666788888999999998888765542 23336777788999
Q ss_pred HHHHHHHHHHhCCCc
Q 007400 539 LVEKVRQLINERQFK 553 (605)
Q Consensus 539 ~a~~~~~~~~~~~~~ 553 (605)
++..+++.+.+...+
T Consensus 241 ~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 241 EVIYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHHHhcCCc
Confidence 999999999876543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0001 Score=69.90 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=105.3
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhc
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD-SYLWNALHGVCRIH 500 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~ 500 (605)
.....+...|.++.|+..++.+. .-.|+ +.......+.+.+.++.++|.+.++++. ..|+ ...+..++.++.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~---~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLI---AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence 33344566789999999999988 33555 6667778889999999999999999973 3455 67788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
|+..+|+..++.....+|+++..|..|+.+|...|+..++.....+...
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877643
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00019 Score=61.94 Aligned_cols=162 Identities=16% Similarity=0.241 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIE 463 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 463 (605)
.|..++-+....|+.+.|...++++... + |.+ ..-..-..-+...|++++|+++++.+..+ .|+ ..++..=+.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlA 128 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLA 128 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHH
Confidence 3555666777889999999999999886 4 544 34333344456679999999999999843 354 667766677
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---Cch
Q 007400 464 LLAQAGCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG---KGR 538 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~ 538 (605)
.....|+.-+|++.+.+. .+..|...|.-+...|...|++++|.-.+++++=..|.++..+..++.++.-.| +..
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 777888888888777665 255899999999999999999999999999999999999999999999988776 455
Q ss_pred HHHHHHHHHHhCCC
Q 007400 539 LVEKVRQLINERQF 552 (605)
Q Consensus 539 ~a~~~~~~~~~~~~ 552 (605)
-+.++|.+..+...
T Consensus 209 ~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhCh
Confidence 67888887776544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.7e-05 Score=72.35 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTH 431 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 431 (605)
.....|+..+...++++.|.++|+++... ++.....+++.+...++..+|++++++.+.. .| +...+..-...|..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 34455666777778888888888888876 5556666788888888888899999888874 34 55566666777888
Q ss_pred cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
.++++.|+.+.+++. ...|+ ..+|..|+.+|.+.|+++.|+..++.++
T Consensus 247 k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 889999999999888 56776 6688899999999999999998888876
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.1e-05 Score=62.36 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP-YEHDS----YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 535 (605)
+...+...|++++|...|+... ..|+. .....++..+...|++++|+..++.. ...+..+..+...+++|.+.|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCC
Confidence 3344444455555555444431 11221 12333445555555555555555442 122223444555566666666
Q ss_pred CchHHHHHHHH
Q 007400 536 KGRLVEKVRQL 546 (605)
Q Consensus 536 ~~~~a~~~~~~ 546 (605)
++++|+..|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 66666555553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-06 Score=59.10 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG-KGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 550 (605)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788899999999999999999999999999999999999999999999 799999999988653
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00011 Score=60.74 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK----ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEHHAC 460 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 460 (605)
|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... ...|+ ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44444444 478888888888888875 3332 24444567788889999999999988833 32332 234556
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007400 461 LIELLAQAGCSDQLMNQLEKMPY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (605)
|..++...|++++|+..++.... ...+..+...+.++...|+.++|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77888889999999999987642 2345566677888999999999999998764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.7e-06 Score=57.20 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++..+...|++++|+..|+++++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667888899999999999999999999999999999999999999999999888654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.4e-05 Score=60.41 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP-YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS---SATHGLLS 528 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 528 (605)
++..++..+.+.|++++|.+.++++. ..|+ ...+..++.++...|++++|...|++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666666777777777666652 1122 3455567777777777777777777777776654 45567777
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007400 529 SIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++.+.|++++|...++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777664
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.3e-05 Score=72.48 Aligned_cols=102 Identities=10% Similarity=0.030 Sum_probs=60.7
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN 502 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 502 (605)
...+...|+++.|+..|+++. ...|+ ...+..+..+|.+.|++++|+..++++. .+.+...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 344555666777777776666 33443 4556666666666666666666666541 22345556666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 503 IDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
+++|+..|++++++.|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666666666666665555544444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.1e-05 Score=58.19 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 535 (605)
+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4556677778888888888887752 23344677778888888899999999999999998888888889999999999
Q ss_pred CchHHHHHHHHHHhC
Q 007400 536 KGRLVEKVRQLINER 550 (605)
Q Consensus 536 ~~~~a~~~~~~~~~~ 550 (605)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998877653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00029 Score=65.27 Aligned_cols=161 Identities=9% Similarity=-0.033 Sum_probs=117.4
Q ss_pred chHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH----
Q 007400 385 MLWNTM-ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH---- 458 (605)
Q Consensus 385 ~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---- 458 (605)
.+|..+ ..++...|++++|...-...++. .+ +......-..++...++.+.|...|++.. ...|+...-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHh
Confidence 344433 23566789999998887777763 33 22333333334556788899999998887 556653221
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHhC-C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007400 459 ---------ACLIELLAQAGCSDQLMNQLEKM-P-----YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 459 ---------~~l~~~~~~~g~~~~A~~~~~~~-~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
..=..-..+.|.+..|.+.|.+. . .+++...|.....+..+.|+.++|+.-.+.+++++|.-...
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 11123355789999999999875 2 34556677777788889999999999999999999988888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 524 HGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 524 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..-+.++...++|++|++.++...+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988664
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.6e-06 Score=62.12 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=47.3
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH
Q 007400 468 AGCSDQLMNQLEKMP-YEH---DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 468 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
.|+++.|+.+++++. ..| +...+..++.++.+.|++++|..++++ .+..|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355555555555541 111 344555566777777777777777777 555565656666667777777777777777
Q ss_pred HHH
Q 007400 544 RQL 546 (605)
Q Consensus 544 ~~~ 546 (605)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0085 Score=55.49 Aligned_cols=247 Identities=13% Similarity=0.098 Sum_probs=168.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007400 291 GYTRNGLGQKALELFTRMMILRIRPNQH--TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368 (605)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (605)
+-.-.|+++.|.+-|+.|.. .|... ....|.-...+.|+.+.|..+-+..-... +.-.......+...+..|++
T Consensus 129 aal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 129 AALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 34456888888888888875 23222 22233334456788888888777776654 44567778888999999999
Q ss_pred HHHHHHHHhcCCC----CCcc--hHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHH
Q 007400 369 NDGRQVFDLTDNK----ENSM--LWNTMISALT---QHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEG 438 (605)
Q Consensus 369 ~~A~~~~~~~~~~----~~~~--~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a 438 (605)
+.|+++.+.-... +++. .-..|+.+-. -..+...|...-.+..+ +.||.. .-.....++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhh
Confidence 9999998853311 1332 1122222211 13456667666666666 788864 555667789999999999
Q ss_pred HHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHH--H--HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007400 439 LTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL--M--NQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A--~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (605)
-.+++.+- ...|.+.+...+ .+.+.|+.... . +-++.|. +.+......+..+....|++..|..-.+.+.
T Consensus 283 ~~ilE~aW---K~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 283 SKILETAW---KAEPHPDIALLY--VRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hhHHHHHH---hcCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 99999998 345555544322 23455543221 1 2233444 4567777888888899999999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007400 515 DQNPQSSATHGLLSSIYSAL-GKGRLVEKVRQLINER 550 (605)
Q Consensus 515 ~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 550 (605)
...| ....|..|+++-... |+-.++...+-+....
T Consensus 357 r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 REAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9999 788999999998877 9999999888776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.5e-05 Score=69.28 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=78.5
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~ 505 (605)
+.+.+++++|+..|.+++ .+.|+ +..|..-..+|.+.|.++.|++-.+... ..| -..+|..|+.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456677888888888877 56665 5566666777888888888887777653 233 35677888888888888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
|++.|+++++++|++......|-.+-.+.+...
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 888888888888888866666666655555444
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.4e-06 Score=48.59 Aligned_cols=35 Identities=37% Similarity=0.572 Sum_probs=30.1
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 007400 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNE 185 (605)
Q Consensus 151 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 185 (605)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37888999999999999999999999988888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.6e-05 Score=67.10 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=78.1
Q ss_pred HHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 463 ELLAQAGCSDQLMNQLEKM-PY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
.-+.+.+++.+|+..|.+. .. +.|++.|..-+.+|.+.|+++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4466789999999999886 33 456777777899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 007400 541 EKVRQLINER 550 (605)
Q Consensus 541 ~~~~~~~~~~ 550 (605)
++.|++.++.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999988763
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00022 Score=63.89 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 453 PNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH---GNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 453 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
-|...|..|...|.+.|++..|...|.+.. ..+++..+..++.++..+ ....++..++++++..+|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 347889999999999999999999888762 346777787777776543 356789999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCCC
Q 007400 528 SSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSL 601 (605)
Q Consensus 528 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 601 (605)
+..+...|++.+|...|+.|.+.... ..|...-+.+.+.+........|..|
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~----------------------~~~rr~~ie~~ia~~~~~~~~~~~~~ 285 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA----------------------DDPRRSLIERSIARALAQRSAQGPAA 285 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC----------------------CCchHHHHHHHHHHHHhcccccCCCC
Confidence 99999999999999999999886432 34455556666666666666655544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.4e-05 Score=60.43 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=84.2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
|+.++ .........-+...|++++|..+|.-+. ...+...|..|+.++...+++++|...|..+..+.++|+.....
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 3334445555678899999999998752 34677888999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007400 527 LSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+.+|...|+.+.|+..|+.+.+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998876
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.6e-06 Score=47.68 Aligned_cols=33 Identities=15% Similarity=0.411 Sum_probs=25.9
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007400 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183 (605)
Q Consensus 151 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 183 (605)
.+|+.+|.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467788888888888888888888888777766
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.7e-05 Score=55.76 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=46.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
...|++++|++.|+++++..|++...+..++.+|.+.|++++|..+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999977653
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00012 Score=58.49 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH----DSYLWNALH 494 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~ 494 (605)
++..++..+...|++++|...|+.+.....-.+ ....+..++.++.+.|++++|...++++. ..| ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555666666666666666652211111 13345556666667777777776666542 112 245677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.++...|+.++|...++++++..|++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888889999999999999999887765444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.6e-05 Score=47.08 Aligned_cols=35 Identities=34% Similarity=0.680 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 419 (605)
.+|++++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0013 Score=53.95 Aligned_cols=151 Identities=11% Similarity=0.050 Sum_probs=110.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 474 (605)
.+.=+++...+-..+-.+ ..|+...-..|..+....|++.+|...|++.. ..-+.-|....-.+.++....+++..|
T Consensus 67 ~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 67 QQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 333344444433333333 56777777778888888999999999998887 434455677778888888888999999
Q ss_pred HHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 475 MNQLEKMP-YEH---DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 475 ~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
...++++. .+| ++.....++..+...|.+.+|+..|+.+++..| .+..-..++..+.++|+.+++..-+..+.+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88888752 122 223344567888899999999999999999999 788888899999999988888665555443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00013 Score=70.33 Aligned_cols=97 Identities=11% Similarity=0.001 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHH
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLA 466 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 466 (605)
.....+...|++++|+..|+++++ ..| +...+..+..+|...|++++|+..++++. .+.|+ ...|..++.+|.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHH
Confidence 345567788999999999999998 456 45688888999999999999999999998 45665 778889999999
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHH
Q 007400 467 QAGCSDQLMNQLEKM-PYEHDSYLW 490 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~-~~~~~~~~~ 490 (605)
..|++++|+..|++. ...|+....
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999986 334443333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.9e-05 Score=46.37 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRP 315 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 315 (605)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0002 Score=61.35 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP-Y---EHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
..+..++..+...|++++|...+++.. . .++ ...+..++..+...|++++|...++++++..|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345556666666677777766666541 1 111 35677788888889999999999999999999888888888888
Q ss_pred HHhcCC
Q 007400 531 YSALGK 536 (605)
Q Consensus 531 ~~~~g~ 536 (605)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00069 Score=58.02 Aligned_cols=129 Identities=11% Similarity=0.144 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD--KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
...+..+...+...|++++|...|++.++.+..+. ...+..+..++.+.|++++|...+++.. ...|+ ...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL---ELNPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcccHHHHHH
Confidence 34566666777777888888888877776432222 2466677777777777888877777776 33443 455566
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
++.++...|+...+..-++... ..+++|.++++++++.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666666555443332211 12677888899988888865 4444444444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00093 Score=67.41 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.++..++......|++++|...++++++++| +...|..++.++...|+.++|.+.+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444445555555555555555555 445555555555555555555555555544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=6e-05 Score=53.86 Aligned_cols=58 Identities=9% Similarity=0.048 Sum_probs=52.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
...|.+.++++.|.++++++++.+|+++..+...+.++...|++++|.+.++.+.+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4567889999999999999999999999999999999999999999999999988654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=66.62 Aligned_cols=129 Identities=10% Similarity=0.048 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHc---hHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESM---THDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-------P-YEHDS 487 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~~ 487 (605)
..|..|...|.-.|+++.|+...+.= .+++|-... ...+..|..++.-.|+++.|.+.|+.. . ..-..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 46677777777788999988766532 223343333 457888899999999999999988764 1 11233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQ------NPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.+-.+|+..|....+++.|++++.+=+.+ .-....++..|+.++...|..++|..+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556788888888899999888776554 22356788899999999999999887766543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0002 Score=61.12 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP-YEH----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 529 (605)
...+..++..+...|++++|...+++.. ..+ ...++..++.++...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5566777777888888888888887752 112 23578889999999999999999999999999999998888898
Q ss_pred HHH-------hcCCchHHHHHHHHH
Q 007400 530 IYS-------ALGKGRLVEKVRQLI 547 (605)
Q Consensus 530 ~~~-------~~g~~~~a~~~~~~~ 547 (605)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666655544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.6e-05 Score=52.47 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=49.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 521 (605)
+...+.+.|++++|.+.|++.. .+.+...+..++.++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888888888888762 234677888899999999999999999999999999764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0031 Score=57.04 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.++..|.+.|.+..|..-++.+++..|+.+ .+...+..+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 356678899999999999999999988655 566688899999999999999887664
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.9e-05 Score=54.61 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHH
Q 007400 397 HGYDEQAIRLFHDMVRSSVK-PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 474 (605)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..++++ . ...|+ ......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555666666665553210 1223334455555555666666555555 2 11221 23333445555555555555
Q ss_pred HHHHH
Q 007400 475 MNQLE 479 (605)
Q Consensus 475 ~~~~~ 479 (605)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00089 Score=67.54 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=102.6
Q ss_pred CCcchHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHchH
Q 007400 382 ENSMLWNTMISALTQ--HG---YDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHS--------GLVQEGLTYFESMTH 447 (605)
Q Consensus 382 ~~~~~~~~l~~~~~~--~g---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 447 (605)
.+...|...+++... .+ +...|..+|++.++ ..|+. ..+..+..++... .+...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 477888888887544 33 36789999999999 67875 4666655554332 123444555554431
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 448 DLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 448 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
......++..+..+.-.+...|++++|...+++. ...|+...|..++..+...|+.++|.+.|++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123334677888877777889999999999986 35678889999999999999999999999999999997664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0061 Score=55.15 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH---HHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHH
Q 007400 16 PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETL---AFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92 (605)
Q Consensus 16 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (605)
+..............|++++|++.|+.+.... +-+..+. ..+..++.+.++++.|...++..++..|..+.. .+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 34444444445666778888888887777643 1122222 334456667777788888887777777776665 554
Q ss_pred HHHHHHH
Q 007400 93 HLISMYF 99 (605)
Q Consensus 93 ~l~~~~~ 99 (605)
..+.+.+
T Consensus 109 ~Y~~g~~ 115 (243)
T PRK10866 109 LYMRGLT 115 (243)
T ss_pred HHHHHHh
Confidence 4554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.044 Score=53.28 Aligned_cols=206 Identities=11% Similarity=0.111 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhcCCCC---CcchHHHHHHHHHHcCCHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG---CLNDGRQVFDLTDNKE---NSMLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
+++..+++..++.-...+..+|..+.+.--..- ..+...+.++++...+ -..+|..++..-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455566665554433334444444443222211 2555556666544321 3456888888888888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC---C
Q 007400 408 HDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP---Y 483 (605)
Q Consensus 408 ~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 483 (605)
.+..+.+..+ +....++++.-++ .++.+-|.++|+.=.+++|- ++......++.+...++-..|..+|++.. .
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988777 5567777777665 47889999999987744433 34455677888999999999999999873 1
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----chHHHHHHHHHhcCCchHHHH
Q 007400 484 EH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS----ATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 484 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~a~~ 542 (605)
.+ ...+|..++..-..-|+...+.++-++.....|.+. ..-..+.+-|.-.+.+.--..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHH
Confidence 22 357899999999999999999999999888776321 233345566655565554333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0005 Score=51.52 Aligned_cols=79 Identities=16% Similarity=0.073 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhHHH
Q 007400 154 NTMIIGYAKSGAVEEGLKFYKVLRRFSI-SCNEFSFAGILTICVKLE--------ELKLTRQVHGQVLVTGFLSNVVISS 224 (605)
Q Consensus 154 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (605)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+.. ..-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999877543 2346778999999999999999999
Q ss_pred HHHHHHHh
Q 007400 225 SIVDAYAK 232 (605)
Q Consensus 225 ~l~~~~~~ 232 (605)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00045 Score=52.24 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=48.2
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
+...+...|++++|...++++. ...|+ ...+..+...+...|++++|.+.+++.. .+.+..++..++..+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKAL---ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHH---hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3334444455555555555444 11222 2344445555555555555555555431 1223345666666667777
Q ss_pred CHHHHHHHHHHHHhcCC
Q 007400 502 NIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p 518 (605)
+++.|...+.++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777766655
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.046 Score=54.68 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=93.4
Q ss_pred cCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCC-----CceeHHHHHHHHHhcCChHHHHHHHHH
Q 007400 101 CGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER-----DVVSWNTMIIGYAKSGAVEEGLKFYKV 175 (605)
Q Consensus 101 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~ 175 (605)
.|++++|++++-.+.++|. .|....+.|++-...++++.-... -...|+.+...++....|++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888888777776654 355666677777766666653321 124577777777777777777777765
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHH
Q 007400 176 LRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWT 255 (605)
Q Consensus 176 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 255 (605)
-.. -...+.++.+..++++-+.+... ++.+....-.+..++.+.|.-++|.+.+-+...+ .
T Consensus 822 ~~~---------~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----k 882 (1189)
T KOG2041|consen 822 CGD---------TENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----K 882 (1189)
T ss_pred ccc---------hHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCc-----H
Confidence 432 11234444444444444333222 3445555666777777777777777666554433 2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChh
Q 007400 256 TMVSGYAKLGDMESASKLFNEMPEKNPV 283 (605)
Q Consensus 256 ~li~~~~~~~~~~~A~~~~~~~~~~~~~ 283 (605)
..+..|...++|.+|.++-++..-|.+.
T Consensus 883 aAv~tCv~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 2344555566677777766666555433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.019 Score=53.69 Aligned_cols=98 Identities=12% Similarity=0.199 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----hH-HHHHHHHHHhcccchHHHHHHHHHHHHcC--CCCC--hh
Q 007400 284 SWTTLIAGYTRNGLGQKALELFTRMMILRIRPN-----QH-TFSSCLCACASIVSLKHGKQVHGFLIRTN--FRSN--TI 353 (605)
Q Consensus 284 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~ 353 (605)
.+..++..+.+.|++++|+++|++....-...+ .. .|...+-++...|++..|...++...... +..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 455667778888888888888888776432221 11 22233335555677777777777766432 2222 23
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhcCCC
Q 007400 354 VMSSLIDMYSK--CGCLNDGRQVFDLTDNK 381 (605)
Q Consensus 354 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 381 (605)
+...|+.++-. ...++.+..-|+.+..-
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 34445555543 23455555566555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0021 Score=59.81 Aligned_cols=132 Identities=11% Similarity=0.122 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA-CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...+.. +...++.+.|..+|+...+. +..+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357778888888888899999999988542 2244555555555 33356777799999998854 4445677888889
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 464 LLAQAGCSDQLMNQLEKMP-YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+.+.|+.+.|..+|++.. .-+. ..+|...+..-.+.|+.+....+.+++.+..|+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999863 1222 358999999999999999999999999999885
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.7e-05 Score=42.58 Aligned_cols=30 Identities=37% Similarity=0.721 Sum_probs=22.1
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007400 152 SWNTMIIGYAKSGAVEEGLKFYKVLRRFSI 181 (605)
Q Consensus 152 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 181 (605)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=53.79 Aligned_cols=86 Identities=8% Similarity=-0.116 Sum_probs=38.5
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 504 (605)
.+...|++++|..+|+-+. .+.|. ..-|..|.-++...|++++|++.|.... .+.|+..+..++.++...|+.+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~---~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLT---IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHCCCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 3334444444444444443 22333 3334444444444444444444444431 1233444444455555555555
Q ss_pred HHHHHHHHHHhc
Q 007400 505 MGRKVVDQLIDQ 516 (605)
Q Consensus 505 ~A~~~~~~~~~~ 516 (605)
.|++.|+.++..
T Consensus 121 ~A~~aF~~Ai~~ 132 (157)
T PRK15363 121 YAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=8.3e-05 Score=52.19 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=34.1
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 467 QAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
..|++++|++.|+++. .+.+..++..++.+|.+.|++++|.++++++....|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4455555555555541 233555555666666666666666666666666666544444433
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00023 Score=50.08 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG-NIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 518 (605)
+..|..++..+...|++++|+..|++.. .+.++.+|..++.++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567777777888888888888887752 2346778888888999998 79999999999999887
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.074 Score=49.75 Aligned_cols=107 Identities=9% Similarity=0.108 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHhccCcHHHHHHHHHHchHh-hCCCCC--HH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-----DKI-TLAVILNACTHSGLVQEGLTYFESMTHD-LGIIPN--QE 456 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~p~--~~ 456 (605)
++..++..+.+.|++++|.++|++.....+.. +.. .|...+-++...||+..|...+++.... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34556666777888888888888776543221 111 3334444666678888888888877621 123223 33
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCCCCCCHHHHHHH
Q 007400 457 HHACLIELLAQ--AGCSDQLMNQLEKMPYEHDSYLWNAL 493 (605)
Q Consensus 457 ~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~l 493 (605)
....|+.++.. ...+++++.-|+.+. +.|..--..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 55666666644 335677777777776 4454433333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00014 Score=45.46 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 529 (605)
.+|..++.+|...|++++|+++|+++++..|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999999999999999999999999999999988875
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.086 Score=50.24 Aligned_cols=426 Identities=13% Similarity=0.082 Sum_probs=207.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChh------hHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHH-
Q 007400 26 SLISKGQLSEAISSLDLLAQRGIRLPAE------TLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY- 98 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~- 98 (605)
.+-+++++.+|..+|.+.-..- .-++. ..+.++++|.. .+.+.....+..+.+..+.. .|-.+..++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s----~~l~LF~~L~ 88 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKS----AYLPLFKALV 88 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCc----hHHHHHHHHH
Confidence 4567899999999999986542 22222 23456677754 45676666666666655432 344444433
Q ss_pred -HhcCChhHHHHHhccCCCC------------------CchHHHHHHHHHHccCChHHHHHHHhhcCC--------CCce
Q 007400 99 -FKCGSDVDARKVFDKIPVK------------------NLFSYNNMLSGYANLGMMKHARNLFDNMAE--------RDVV 151 (605)
Q Consensus 99 -~~~g~~~~a~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~~~ 151 (605)
-+.+.+.+|.+.+...... +...-+..+..+...|++.+++.+++++.. -++.
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 3678888888877665421 122334567788999999999999998862 4778
Q ss_pred eHHHHHHHHHhc--------CCh-------HHHHHHHHHHHhC------CCCCChhhHHHHHHHHhc--cCChHHHHHHH
Q 007400 152 SWNTMIIGYAKS--------GAV-------EEGLKFYKVLRRF------SISCNEFSFAGILTICVK--LEELKLTRQVH 208 (605)
Q Consensus 152 ~~~~li~~~~~~--------~~~-------~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~ 208 (605)
+|+.++-.+.++ ... +.+.-..++|... .+.|-...+..++....- .....--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 888766555442 111 1222222222211 122333333333322211 11112222222
Q ss_pred HHHHHhCCCCChh-HHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHH--hhCCCCChhhH
Q 007400 209 GQVLVTGFLSNVV-ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLF--NEMPEKNPVSW 285 (605)
Q Consensus 209 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~--~~~~~~~~~~~ 285 (605)
+.....-+.|+-. +...|..-+.. +.+++..+.+.+ ..+ +.+.+.=+.++
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i-------------------------a~~~i~~Lke~li~~F 301 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI-------------------------ASSKIEKLKEELIDRF 301 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH-------------------------HHHhHHHHHHHHHHHH
Confidence 2222222333221 11222222222 222222222221 111 11112234456
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH-------HHHh-cccch---HHHHHHHHHHHHcCCCCChhH
Q 007400 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL-------CACA-SIVSL---KHGKQVHGFLIRTNFRSNTIV 354 (605)
Q Consensus 286 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-------~~~~-~~~~~---~~a~~~~~~~~~~~~~~~~~~ 354 (605)
..++....+.++...|-+.+.-+... .|+...-.-++ ...+ ...+. ..-..+|..+...++.. ...
T Consensus 302 ~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQL 378 (549)
T PF07079_consen 302 GNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQL 378 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHH
Confidence 67777777788888877777666552 34333211111 1111 11111 11222333333332211 111
Q ss_pred HHHH---HHHHHhcCC-hHHHHHHHHhcCC--CCCcchHHHHH----HHHHH---cCCHHHHHHHHHHHHHCCCCCCH--
Q 007400 355 MSSL---IDMYSKCGC-LNDGRQVFDLTDN--KENSMLWNTMI----SALTQ---HGYDEQAIRLFHDMVRSSVKPDK-- 419 (605)
Q Consensus 355 ~~~l---~~~~~~~g~-~~~A~~~~~~~~~--~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~m~~~~~~p~~-- 419 (605)
..-| ..-+.+.|. -++|.++++.+.. .-|..+-|... ..|.+ ...+.+-..+-.-..+.|++|-.
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 1122 223444454 6667777765542 11333222221 12222 12233333444444556666532
Q ss_pred --HHHHHHHHH--HhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 007400 420 --ITLAVILNA--CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNA 492 (605)
Q Consensus 420 --~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 492 (605)
..-+.|.+| +...|++..+.-.-.-+. .+.|++.+|..++-++....++++|.+.+.+++ |+..+++.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 344444444 345677777765554444 567777777777777777778888888887777 45555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=5.9e-05 Score=43.80 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 007400 509 VVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 542 (605)
+|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0011 Score=51.85 Aligned_cols=89 Identities=12% Similarity=0.073 Sum_probs=61.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHH
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP---YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ---SSATHGLLSSIY 531 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 531 (605)
.+..++-..|+.++|+.+|++.. ... -...+-.++..+...|++++|+.++++.+...|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34556666777777777776541 111 1335556777888888888888888888887776 566666777888
Q ss_pred HhcCCchHHHHHHHHHH
Q 007400 532 SALGKGRLVEKVRQLIN 548 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~ 548 (605)
...|+.++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 88888888877765443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0016 Score=48.83 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHhccc--------chHHHHHHHHHHHHcCCCCChhH
Q 007400 284 SWTTLIAGYTRNGLGQKALELFTRMMILRI-RPNQHTFSSCLCACASIV--------SLKHGKQVHGFLIRTNFRSNTIV 354 (605)
Q Consensus 284 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 354 (605)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +......+|+.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345567777788999999999999999999 999999999999887643 34566789999999999999999
Q ss_pred HHHHHHHHHh
Q 007400 355 MSSLIDMYSK 364 (605)
Q Consensus 355 ~~~l~~~~~~ 364 (605)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.016 Score=54.86 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCCcc------hHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM------LWNTMISALTQ---HGYDEQAIRLFHDMVRSSVKPDKITLAV 424 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 424 (605)
+...++-.|....+++..+++++.+...|+.. .-...+-++-+ .|+.++|+.++..++...-.+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455556777888888888888777554321 11223344555 7888889988888666556777888888
Q ss_pred HHHHHhc---------cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChH----HHHHHH---H----h-C--
Q 007400 425 ILNACTH---------SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD----QLMNQL---E----K-M-- 481 (605)
Q Consensus 425 l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~----~-~-- 481 (605)
+.+.|-. ....+.|+..|.+.- .+.|+...--.++..+.-.|... +..++- . + -
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7776532 234677888887765 45566443333333444444322 222221 1 1 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 482 PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 482 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
....+-..+.+++.++.-.|+++.|.+.+++++.+.|+...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 12244555567899999999999999999999999875443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.037 Score=54.80 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
+...+..-+.+...+..|-++|..|- + ...+++.....+++++|..+-++.+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~g-D---------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMG-D---------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhc-c---------HHHHhhheeecccchHhHhhhhhCc
Confidence 44444444444555566666666654 1 1235556666677777777766664
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00016 Score=41.29 Aligned_cols=31 Identities=26% Similarity=0.518 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 415 (605)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677788888888888888888888777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.024 Score=53.07 Aligned_cols=86 Identities=7% Similarity=-0.001 Sum_probs=55.9
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH---HHHHHHHHHHhc
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-----QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY---LWNALHGVCRIH 500 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~l~~~~~~~ 500 (605)
..+.|++..|.+.|.+.+ ++.|+ ...|.....+..+.|+..+|+.-.++.. ..|.. .+..-+.++...
T Consensus 259 ~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHH
Confidence 345677777777777776 44443 4556666667777888888887776654 23332 233334455666
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 007400 501 GNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p 518 (605)
+++++|++-|+++.+...
T Consensus 335 e~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 788888888888887744
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.1 Score=49.72 Aligned_cols=190 Identities=11% Similarity=0.034 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCC-CCcch-------HHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHH
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENSML-------WNTMISALT----QHGYDEQAIRLFHDMVRSSVKPDKI 420 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-------~~~l~~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~ 420 (605)
.++..++....+.++...|.+.+.-+..- |+... -..+-+..+ ..-+...-+.+|+...... .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 34566666667777777776666543311 11110 111111111 1112233345566665532 3332
Q ss_pred -HHHHHHH---HHhccCc-HHHHHHHHHHchHhhCCCCC-HHHHHHHH----HHHHhc---CChH---HHHHHHHhCCCC
Q 007400 421 -TLAVILN---ACTHSGL-VQEGLTYFESMTHDLGIIPN-QEHHACLI----ELLAQA---GCSD---QLMNQLEKMPYE 484 (605)
Q Consensus 421 -~~~~l~~---~~~~~g~-~~~a~~~~~~~~~~~~~~p~-~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~ 484 (605)
....++. -+.+.|. -+.|+.+++.+. .+.|. ...-+.+. .+|... ..+. +-...+++.+.+
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 2222322 2444554 778888888877 33443 22222221 222221 1222 223344455443
Q ss_pred C----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 485 H----DSYLWNALHGV--CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 485 ~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
| +...-+.|..+ +..+|++.++.-.-.-..+..| ++.+|..+|-++....+|++|..++..+.
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3 34455666554 4678999999988888888899 99999999999999999999999998663
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00062 Score=65.02 Aligned_cols=67 Identities=7% Similarity=-0.061 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT---HGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+.+...|+.++.+|...|++++|+..|+++++++|++... |+.++.+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457788888888888888888888888888888877744 888888888888888888888888774
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0012 Score=60.09 Aligned_cols=93 Identities=14% Similarity=0.096 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKMP-YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS---SATHGLLSS 529 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 529 (605)
|..-...+.+.|++++|...|+.+. ..|+ +.++.-++.+|...|++++|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344566666666665541 1122 2355556777777777777777777777776654 344555677
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007400 530 IYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 530 ~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++...|++++|..+++.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.028 Score=46.49 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=57.3
Q ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C---CcchHHH
Q 007400 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-E---NSMLWNT 389 (605)
Q Consensus 314 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~~~ 389 (605)
.|+...-..+..++...|+..+|...|++...--+-.|..+...+.++....+++..|...++.+.+- | ++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 44444444455555555555555555555554444444444444555555555555555555443321 1 2223334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 438 (605)
+.+.+...|++..|..-|+.... ..|+...-......+.+.|+.+++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHH
Confidence 44445555555555555555554 344443333333334444443333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00027 Score=51.21 Aligned_cols=61 Identities=21% Similarity=0.149 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC----CCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQ---NP----QSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.+++.++.+|...|++++|++.|+++++. .+ .-..++..++.++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777888888888888877765 22 124566678888888888888888877664
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0042 Score=52.98 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD--KITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.|..++..+...|++++|+..|++.......|. ..++..+..++...|++++|+..+++..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445555555555555555544211111 1244444455555555555555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0054 Score=57.03 Aligned_cols=141 Identities=15% Similarity=0.211 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA-CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356777777777777888888888877532 3344445444444 22345666688888887765 36677777888888
Q ss_pred HHhcCChHHHHHHHHhcCCC-CCc----chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDNK-ENS----MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 427 (605)
+.+.|+.+.|+.+|+..... +.. ..|...+..-.+.|+.+.+..+.+++.+ ..|+...+..++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 88888888888888875543 222 3677788877888888888888888777 4555444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.003 Score=61.11 Aligned_cols=122 Identities=11% Similarity=0.048 Sum_probs=86.9
Q ss_pred CCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCCcc
Q 007400 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT--NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD---NKENSM 385 (605)
Q Consensus 311 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 385 (605)
.+.+.+...+..++..+....+++.+..++-..... ....-+.+..++++.|.+.|..+.+.++++.=. -=||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667777888888888888888888888877765 333334555678888888888888887776433 226778
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS 432 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 432 (605)
+++.++..+.+.|++..|.++.-.|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888777777666666666666666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.15 Score=48.11 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 433 (605)
+.+..+.-+...|+...|.++-.+...+ +..-|...+.+++..++|++-..+... +-++.-|..++.+|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~-dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVP-DKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 3344456667778888888888777665 888888899999999999877665432 224577888888888889
Q ss_pred cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007400 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGV 496 (605)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 496 (605)
+..+|..+..++. +..-+..|.++|++.+|.+.--+.. |...+..+...
T Consensus 252 ~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~ 300 (319)
T PF04840_consen 252 NKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKR 300 (319)
T ss_pred CHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 9888888887643 1344677888888888887766544 44444444333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.28 Score=51.01 Aligned_cols=449 Identities=11% Similarity=0.124 Sum_probs=215.1
Q ss_pred hcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHH--HhcCChhHHHHHhccCCC---CCchHHHHHHHHHHccCChHHH
Q 007400 64 ESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMY--FKCGSDVDARKVFDKIPV---KNLFSYNNMLSGYANLGMMKHA 138 (605)
Q Consensus 64 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A 138 (605)
..+++..|.+....+.+..|.. .|...+.++ .+.|+.++|..+++.... .|..|...+-..|...+..++|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 5567888999888888886444 344555544 577888998888887753 3566777788888888888888
Q ss_pred HHHHhhcCC--CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC-C---------hHHHHH
Q 007400 139 RNLFDNMAE--RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE-E---------LKLTRQ 206 (605)
Q Consensus 139 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~---------~~~a~~ 206 (605)
..+|++... |+......+..+|.+-+++.+-.+.--+|-+ ..+-++..|=++++...... . ..-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 888888775 4433444445566666666544433333332 22234444445554433211 1 123344
Q ss_pred HHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHhh-cCC----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007400 207 VHGQVLVTG-FLSNVVISSSIVDAYAKCGELSDARRLFDE-TDA----RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK 280 (605)
Q Consensus 207 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 280 (605)
..+.+++.+ ..-+..-...-...+...|++++|.+++.. ..+ .+...-+.-+..+...+++.+..++-.++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 444444433 111111112222334445666666655521 111 12222233334444444544444444433322
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
+..-|...+.. +++-+......|-... ....+..+...+......... ....|-+-+.
T Consensus 256 ~~Ddy~~~~~s------------v~klLe~~~~~~a~~~-------~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~le 313 (932)
T KOG2053|consen 256 GNDDYKIYTDS------------VFKLLELLNKEPAEAA-------HSLSKSLDECIEKAQKNIGSK---SRGPYLARLE 313 (932)
T ss_pred CCcchHHHHHH------------HHHHHHhcccccchhh-------hhhhhhHHHHHHHHHHhhccc---ccCcHHHHHH
Confidence 11112211111 0000000000000000 000111111111111111110 1111111122
Q ss_pred HH---HhcCChHHHHHHH-HhcCCCC------------------------------Ccc-------hHHHHHHHHHHcC-
Q 007400 361 MY---SKCGCLNDGRQVF-DLTDNKE------------------------------NSM-------LWNTMISALTQHG- 398 (605)
Q Consensus 361 ~~---~~~g~~~~A~~~~-~~~~~~~------------------------------~~~-------~~~~l~~~~~~~g- 398 (605)
++ ..-|+.+++...| +....+| +.. .+...+..-...|
T Consensus 314 l~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~ 393 (932)
T KOG2053|consen 314 LDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGL 393 (932)
T ss_pred HHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhc
Confidence 21 1234444433222 2222111 111 0111111111223
Q ss_pred ----CHHHHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHhccCcHH---HHHHHHHHchHhhCCCC
Q 007400 399 ----YDEQAIRLFHDMV---RSS------VKPDKI---------TLAVILNACTHSGLVQ---EGLTYFESMTHDLGIIP 453 (605)
Q Consensus 399 ----~~~~a~~~~~~m~---~~~------~~p~~~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~p 453 (605)
..+....++++.. +.| +-|+.. +.+.++..+.+.++.. +|+-+++... ...|
T Consensus 394 ~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~gl---t~s~ 470 (932)
T KOG2053|consen 394 YEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGL---TKSP 470 (932)
T ss_pred cccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---hcCC
Confidence 1233333333322 222 333332 3456677788887765 4555555544 2233
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007400 454 -NQEHHACLIELLAQAGCSDQLMNQLEKMP---YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529 (605)
Q Consensus 454 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 529 (605)
|..+--.+++.|.-.|-+..|.++|+.+. ++.|...+. +...+...|++..+...+...+...-++..-.-.++.
T Consensus 471 hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~ 549 (932)
T KOG2053|consen 471 HNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIA 549 (932)
T ss_pred ccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 34555678888999999999999999885 334444443 3345566789999999999988874434333334444
Q ss_pred HHHhcCCchHHHHH
Q 007400 530 IYSALGKGRLVEKV 543 (605)
Q Consensus 530 ~~~~~g~~~~a~~~ 543 (605)
.-.+.|.+.+..+.
T Consensus 550 ~AYr~g~ySkI~em 563 (932)
T KOG2053|consen 550 LAYRRGAYSKIPEM 563 (932)
T ss_pred HHHHcCchhhhHHH
Confidence 44566777776654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0048 Score=48.31 Aligned_cols=110 Identities=14% Similarity=0.027 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--hhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCc-hhhHHHHHHH
Q 007400 21 IQSFLSLISKGQLSEAISSLDLLAQRGIRLP--AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPT-TFLSNHLISM 97 (605)
Q Consensus 21 ~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 97 (605)
+..-..+-..|+.++|+.+|++..+.|...+ ...+..+...+...|++++|..+++......+..+. ......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3333455567999999999999999886554 346667778888999999999999999887654211 1122234446
Q ss_pred HHhcCChhHHHHHhccCCCCCchHHHHHHHHHH
Q 007400 98 YFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYA 130 (605)
Q Consensus 98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 130 (605)
+...|+.++|.+++-...-++...|..-|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999988776554444444544444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0038 Score=56.90 Aligned_cols=102 Identities=10% Similarity=0.098 Sum_probs=66.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-----YEHDSYLWNALH 494 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~ 494 (605)
.|...+....+.|++++|...|+.+.+.+.-.+- ...+..++.+|...|++++|...|+++. .+.....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444443344556777777777777633211110 2456667777777777777777776652 112345566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
..+...|+.+.|..+|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7888899999999999999999996554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=55.22 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=77.1
Q ss_pred HHHHhhc--CCCCceeHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc-------------
Q 007400 139 RNLFDNM--AERDVVSWNTMIIGYAK-----SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL------------- 198 (605)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 198 (605)
...|+.. ..+|-.+|..++..|.+ .|..+-....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 34666777777777764 478888888999999999999999999999887542
Q ss_pred ---CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007400 199 ---EELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235 (605)
Q Consensus 199 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (605)
.+-+-|.+++++|...|+.||..++..|++++++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788999999999999999999999999977665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0039 Score=60.35 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=89.0
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcCC-C-----CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 007400 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAE-R-----DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI 191 (605)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 191 (605)
+......+++.+....+++.+..++-+... | -..|.+++|+.|.+.|..+.++++++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 334555666666666777777777776653 1 2346678899999999999999999888889999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 007400 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKC 233 (605)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (605)
|..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999988888877666666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=47.15 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=52.6
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 462 IELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
...|.+.+++++|.++++++- .+.++..|...+.++...|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356788889999998888862 34567788888999999999999999999999999976665443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.2 Score=47.22 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
+.+..+.-+...|+...|.++-.+. --|+..-|...+.+++..++|++-..+-.. .-++..|...+.++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHH
Confidence 4455566677788888777775554 236778888888888888888877665432 12345677778888
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
.+.|+..+|..++.+++ +..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888865 13345566777888877665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.36 Score=49.23 Aligned_cols=335 Identities=12% Similarity=0.090 Sum_probs=194.0
Q ss_pred hCCCCCChhhHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHhhcCC-
Q 007400 178 RFSISCNEFSFAG-----ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE---LSDARRLFDETDA- 248 (605)
Q Consensus 178 ~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~- 248 (605)
.-|++.+..-|.. +|.-+...+.+..|.++-..+...-.. ...+|.....-+.+..+ .+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4567666665544 455566677778888776665321111 14566666666666532 2334444455555
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHhhCCCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHH
Q 007400 249 -RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK--------NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHT 319 (605)
Q Consensus 249 -~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 319 (605)
....+|..+..-....|+.+.|..+++.-... +..-+...+.-+...|+.+-...++-.+... .+...
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~ 580 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSS 580 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHH
Confidence 35677888888888889999998888765432 2333555566677777777777777666542 12222
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC------CCCCcchHHHHHHH
Q 007400 320 FSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD------NKENSMLWNTMISA 393 (605)
Q Consensus 320 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~ 393 (605)
|...+ .+...|..+|.+..+..-.. .+-+.|- .++...+...|..-. ..+-..........
T Consensus 581 l~~~l------~~~p~a~~lY~~~~r~~~~~------~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 581 LFMTL------RNQPLALSLYRQFMRHQDRA------TLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHH------HhchhhhHHHHHHHHhhchh------hhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 22211 23344555555544321111 1111222 222222222221000 00111122223333
Q ss_pred HHHcCCH---HHH-------HHHHHHHH-HCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHH
Q 007400 394 LTQHGYD---EQA-------IRLFHDMV-RSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462 (605)
Q Consensus 394 ~~~~g~~---~~a-------~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 462 (605)
+.+.... ++| +.+.+.+. +.|......+.+--+.-+...|+..+|.++-.+.+ .||...|-.-+
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKL 722 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHH
Confidence 4433321 111 12222222 12222333455666666777899999999888776 68888888888
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 542 (605)
.+++..+++++-+++-++.. .+.-|.-...+|.++|+.++|.+++-+.-.+ .....+|.+.|++.+|.+
T Consensus 723 ~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHH
Confidence 99999999999999888776 2566777888999999999999887765322 168889999999999877
Q ss_pred HHH
Q 007400 543 VRQ 545 (605)
Q Consensus 543 ~~~ 545 (605)
.--
T Consensus 792 ~A~ 794 (829)
T KOG2280|consen 792 LAA 794 (829)
T ss_pred HHH
Confidence 643
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0034 Score=58.66 Aligned_cols=124 Identities=11% Similarity=0.035 Sum_probs=67.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhC----CCC---------CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHH
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLG----IIP---------NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSY 488 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 488 (605)
.-...+.+.|++..|..-|+++..-.. ..+ -..++..|..++.+.+++.+|+...++.. .++|+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 345667788888888888877653211 111 12334455555555555555555555431 234555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH-HHHHHHH
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV-EKVRQLI 547 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~ 547 (605)
.+..-+.+|...|+++.|+..|+++++++|+|..+-..|..+-.+...+.+. .++|..|
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666666666666666665555555555555444443332 4444444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.02 Score=50.43 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=39.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHH
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 542 (605)
++..|.+.|.+..|...++.+++..|++. .+...++.+|.+.|..+.+..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 56778899999999999999999999765 355678899999999885543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.017 Score=52.15 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=80.2
Q ss_pred CC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcC---ChHHHHHHHHhCC--CCCCHH
Q 007400 416 KP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAG---CSDQLMNQLEKMP--YEHDSY 488 (605)
Q Consensus 416 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~--~~~~~~ 488 (605)
.| |...|..|..+|...|+.+.|...|.+.. .+.|+ +..+..+..++..+. ...++.++++++. .+.|+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 44 66789999999999999999999999887 34444 666666776654433 4567888888862 345677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
+...|+..+...|++.+|...++.+++..|.+..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 8888888999999999999999999999774443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.23 Score=46.49 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=40.8
Q ss_pred cCChHHHHHHHhhcCCCC---cchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 007400 233 CGELSDARRLFDETDARD---VLTWTTMVSGYAKLGDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFT 306 (605)
Q Consensus 233 ~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 306 (605)
.|+++.|.+-|+.|...- ..-...|.-..-+.|..+.|..+-++.-.. -...+.+.+...+..|+|+.|+++++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd 212 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVD 212 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHH
Confidence 455555555555554321 011222222233455555555555554332 23356667777777777777777777
Q ss_pred HHHH
Q 007400 307 RMMI 310 (605)
Q Consensus 307 ~m~~ 310 (605)
.-..
T Consensus 213 ~~~~ 216 (531)
T COG3898 213 AQRA 216 (531)
T ss_pred HHHH
Confidence 6554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0067 Score=51.84 Aligned_cols=96 Identities=7% Similarity=0.131 Sum_probs=77.1
Q ss_pred HHHhhC--CCCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc--------------
Q 007400 272 KLFNEM--PEKNPVSWTTLIAGYTRN-----GLGQKALELFTRMMILRIRPNQHTFSSCLCACASI-------------- 330 (605)
Q Consensus 272 ~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 330 (605)
..|+.. ..++-.+|..++..|.+. |+.+-....++.|.+-|+.-|..+|+.|+..+-+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 555555 456777788888777654 78888888999999999999999999999987652
Q ss_pred --cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 331 --VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 331 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
.+-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788999999999999999999999998877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0065 Score=56.88 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=89.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-
Q 007400 390 MISALTQHGYDEQAIRLFHDMVRS-----SVKPD---------KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN- 454 (605)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~m~~~-----~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 454 (605)
-...|.+.|++..|...|++.+.. +..+. ..++..+..++.+.+++..|+..-.+.. ...|+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL---e~~~~N 290 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL---ELDPNN 290 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH---hcCCCc
Confidence 355788999999999999987652 11111 1356777788889999999999999888 44544
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYL-WNALHGVCRIHG-NIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 518 (605)
......-..++...|+++.|+..|+++ ...|+... -..++..-.+.. ..+...++|.+|+...+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 667777788999999999999999987 34555444 444444433333 34455778888887644
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.44 Score=48.11 Aligned_cols=213 Identities=8% Similarity=0.019 Sum_probs=95.5
Q ss_pred hHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC--------ChhhHHHHHHHHhccCChHHHH
Q 007400 135 MKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR-FSISC--------NEFSFAGILTICVKLEELKLTR 205 (605)
Q Consensus 135 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p--------~~~~~~~ll~~~~~~~~~~~a~ 205 (605)
+++|.+..+.- |.+..|..+.......-.++.|...|-+... .|++. +...-.+=+. +--|.+++|+
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence 45555554443 4445666666655555555555555544432 12210 0000001111 1235566666
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCC-----cchHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007400 206 QVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARD-----VLTWTTMVSGYAKLGDMESASKLFNEMPEK 280 (605)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 280 (605)
++|-++-+.+ ..+..+.+.|++-.+.++++.-...+ ...|+.+...+.....|++|.+.+..-...
T Consensus 755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 6655443332 13455555666666665555433321 134555555555555555555555443211
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
...+.++.+..++++-..+... ++-+....-.+...+.+.|.-++|.+.+-+. + .| ...+.
T Consensus 826 -----e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~ 886 (1189)
T KOG2041|consen 826 -----ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVH 886 (1189)
T ss_pred -----HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHH
Confidence 1123333333333333222222 2333344444555556666655555444322 1 11 12344
Q ss_pred HHHhcCChHHHHHHHHhcC
Q 007400 361 MYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~ 379 (605)
.+...+++.+|.++-+...
T Consensus 887 tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5555566666666655443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.045 Score=48.02 Aligned_cols=138 Identities=9% Similarity=0.012 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHH-----H
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMS-----S 357 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 357 (605)
...+.++..+.-.|.+.-....+++..+...+-+......+.+.-.+.|+.+.|...++...+..-..+...++ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566677777788888888888888886656677777788888888899999988888776543333333333 3
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007400 358 LIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422 (605)
Q Consensus 358 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 422 (605)
....|.-.+++..|...|+++... .|+..-|.-.-+..-.|+...|++.++.|+.. .|...+-
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~ 322 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH 322 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence 344566778888888888877643 25555565555566678889999999998884 5554433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.032 Score=49.18 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHH
Q 007400 16 PNNCLIQSFLSLISKGQLSEAISSLDLLAQRGI--RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93 (605)
Q Consensus 16 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (605)
+...++.........|++.+|...|+.+..... +........++.++...|+++.|...++..++..|..+.. .+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHH
Confidence 445566666778899999999999999987531 1223566667788889999999999999999998877765 4544
Q ss_pred HHHHHH
Q 007400 94 LISMYF 99 (605)
Q Consensus 94 l~~~~~ 99 (605)
.+.+.+
T Consensus 83 Y~~g~~ 88 (203)
T PF13525_consen 83 YMLGLS 88 (203)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.053 Score=47.60 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
+.++..+.-.|.+.-.+.++++.++...+-++.....|.+.-.+.||.+.|...|++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 33444444455555555555555554333344555555555556666666666665554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0016 Score=47.12 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP-----YE---HD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.+++.+...|...|++++|++.+++.. .. |+ ..++..++.++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666666666665555431 11 22 446677888888888888888888888764
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.023 Score=54.84 Aligned_cols=142 Identities=13% Similarity=0.064 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhc---------cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHH
Q 007400 399 YDEQAIRLFHDMVR-SSVKPDK-ITLAVILNACTH---------SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLA 466 (605)
Q Consensus 399 ~~~~a~~~~~~m~~-~~~~p~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 466 (605)
..+.|+.+|.+.+. ..+.|+. ..|..+..++.. ..+..+|.+.-++.. .+.|+ +.....+..++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 34567778888871 1256654 466666655432 122344555555554 44443 555666666667
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH--HHHHHHHhcCCchHHHH
Q 007400 467 QAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG--LLSSIYSALGKGRLVEK 542 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~a~~ 542 (605)
-.|+++.|..+|++.. ..| ...+|...+..+.-.|+.++|.+.++++++++|....+-. ...++|+..+ .++|+.
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 7777777777777752 333 3556666666667778888888888888888775443333 3333455444 344444
Q ss_pred HH
Q 007400 543 VR 544 (605)
Q Consensus 543 ~~ 544 (605)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 43
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.32 Score=43.13 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=112.4
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhh
Q 007400 13 KNLPNNCLIQSFLSLISKGQLSEAISSLDLLAQRG--IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFL 90 (605)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 90 (605)
...|-+.+.+..+..+..|++.+|.+.|+.+.... -+....+...++.+..+.++++.|....+..+...|..++. .
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-d 108 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-D 108 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-h
Confidence 34577788888888889999999999999997653 12244566667777889999999999999999999988888 7
Q ss_pred HHHHHHHHHhc-------CChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeH--HHHHHHHH
Q 007400 91 SNHLISMYFKC-------GSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSW--NTMIIGYA 161 (605)
Q Consensus 91 ~~~l~~~~~~~-------g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~li~~~~ 161 (605)
|-..|.+++.. +|...+...+..+ ..++.-|=...=...|..-...+. |.... -.+.+.|.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f--------~~~i~ryPnS~Ya~dA~~~i~~~~--d~LA~~Em~IaryY~ 178 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAF--------KELVQRYPNSRYAPDAKARIVKLN--DALAGHEMAIARYYL 178 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHH--------HHHHHHCCCCcchhhHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 88788877732 1111111111111 111111111111111111111000 11111 12346678
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChh---hHHHHHHHHhccCChHHHHHHHHHHHH
Q 007400 162 KSGAVEEGLKFYKVLRRFSISCNEF---SFAGILTICVKLEELKLTRQVHGQVLV 213 (605)
Q Consensus 162 ~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~ 213 (605)
+.|.+..|..-++.|.+. .+-+.. .+-.+..+|...|-.++|.+.-+-+..
T Consensus 179 kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 179 KRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 888888888888888774 222222 344455566666766666666554433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.16 Score=39.58 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=88.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
..-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+- .| ...+|++.+
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHH
Confidence 44578888888988888763 24455666555444444445555555555422 12 123455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 474 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
...-+-.+. .+.......+.....+|+-++-.+++..+.+....++.....++.+|.+.|+..++.+++.++-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555555554 455566667788899999999999999988664448899999999999999999999999999998874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.73 Score=47.15 Aligned_cols=349 Identities=14% Similarity=0.117 Sum_probs=188.6
Q ss_pred HHHhcCChhHHHHHHHHH--------HHcCCCCChhhHHH-----HHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHH
Q 007400 26 SLISKGQLSEAISSLDLL--------AQRGIRLPAETLAF-----ILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~--------~~~g~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (605)
++.+..++++-..+-..+ .+-|++.+...|.. ++..+...+.+..|.++-..+....... .. +|.
T Consensus 398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~-Vl~ 475 (829)
T KOG2280|consen 398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DR-VLL 475 (829)
T ss_pred cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cH-HHH
Confidence 333445555544444333 35677777666654 5666677788888888876654222222 23 677
Q ss_pred HHHHHHHhcC---ChhHHHHHhccCCC--CCchHHHHHHHHHHccCChHHHHHHHhhcCCC--------CceeHHHHHHH
Q 007400 93 HLISMYFKCG---SDVDARKVFDKIPV--KNLFSYNNMLSGYANLGMMKHARNLFDNMAER--------DVVSWNTMIIG 159 (605)
Q Consensus 93 ~l~~~~~~~g---~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~ 159 (605)
.....+.+.. +-+.+..+-+++.. ....+|..+.+.....|+.+-|..+++.=+.. +..-+...+.-
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 7777666653 23334444444444 34567888888888999999999998865431 34456666777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 160 YAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDA 239 (605)
Q Consensus 160 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 239 (605)
+.+.|+.+-...++-.+... .+...|...+ .+...|..+|.+..+..-. . .|-+.|-...+...+
T Consensus 556 aies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~---~---~l~d~y~q~dn~~~~ 620 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDR---A---TLYDFYNQDDNHQAL 620 (829)
T ss_pred HHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhch---h---hhhhhhhcccchhhh
Confidence 78888888888887776542 1222222222 2334455555554442111 0 011112111111111
Q ss_pred HHHH-hhcC-----CCCcchHHHHHHHHHhcCChHHH----------HHHHhhCCCC-----ChhhHHHHHHHHHhCCCh
Q 007400 240 RRLF-DETD-----ARDVLTWTTMVSGYAKLGDMESA----------SKLFNEMPEK-----NPVSWTTLIAGYTRNGLG 298 (605)
Q Consensus 240 ~~~~-~~~~-----~~~~~~~~~li~~~~~~~~~~~A----------~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~ 298 (605)
-.+. +... ..-........+.+.+.....-. +.+.+.+... .--+.+--+..+..-|+.
T Consensus 621 a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~ 700 (829)
T KOG2280|consen 621 ASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQN 700 (829)
T ss_pred hhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccch
Confidence 1110 0000 00011112222222222221111 1111111111 112344455666777888
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 007400 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT 378 (605)
Q Consensus 299 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 378 (605)
.+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-+.. -++.-|...+..+.+.|+.++|.+.+..+
T Consensus 701 k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 701 KRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 88877776655 577777777777888777777655443322 12455666777888888888888888766
Q ss_pred CCCCCcchHHHHHHHHHHcCCHHHHHHHH
Q 007400 379 DNKENSMLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 379 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
..-+ -...+|.+.|++.+|.++-
T Consensus 771 ~~l~------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 771 GGLQ------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred CChH------HHHHHHHHhccHHHHHHHH
Confidence 6542 4556677777777776654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.63 Score=46.42 Aligned_cols=183 Identities=11% Similarity=0.048 Sum_probs=125.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 428 (605)
+...|...+..-.+.|+.+.+.-+|+....+ --...|-..+.-....|+.+-|..++.+..+-.++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556777788888999999999999887654 12334555566666669999988888777765333333333333333
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCCHHHHHHHH----H-HHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLM---NQLEKMP-YEHDSYLWNALH----G-VCR 498 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~----~-~~~ 498 (605)
+...|++..|..+++.+..+ . |+ ...-..-+....+.|..+.+. +++.... ...+......+. . .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999844 3 66 334444455677888888888 5554432 222322222222 1 345
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
..++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 57899999999999999999999999999988887763
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.5 Score=45.20 Aligned_cols=87 Identities=10% Similarity=-0.044 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC
Q 007400 38 SSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVK 117 (605)
Q Consensus 38 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 117 (605)
++=++..+ .+.|+.+|-.++..+...+..++.+++++++..-.+-.+. ++...+++=....++..++.+|.+....
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~--aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEH--AWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccH--HHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 33344443 3566777778888887777788888887777644333222 5666666666667777777777666532
Q ss_pred --CchHHHHHHHH
Q 007400 118 --NLFSYNNMLSG 128 (605)
Q Consensus 118 --~~~~~~~li~~ 128 (605)
+...|...++.
T Consensus 106 ~l~ldLW~lYl~Y 118 (660)
T COG5107 106 SLNLDLWMLYLEY 118 (660)
T ss_pred hccHhHHHHHHHH
Confidence 34445554443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.2 Score=47.10 Aligned_cols=126 Identities=15% Similarity=0.075 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh-------cCCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDL-------TDNK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVR----SSV-KPDKI 420 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~ 420 (605)
.|..|...|.-.|+++.|+..-+. ...+ .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344444555555666666544331 1111 1223455566666667777777776665432 111 11223
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHh---h-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHD---L-GIIPNQEHHACLIELLAQAGCSDQLMNQLE 479 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 479 (605)
+...|..+|.-..+++.|+.++.+-..- . ...-....+..|..+|...|..++|+.+.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4455555665556666666666543310 0 111123344455555555555555555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.56 Score=44.89 Aligned_cols=133 Identities=11% Similarity=0.145 Sum_probs=92.1
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHH-HHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE-HHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~ 460 (605)
-...|...+..-.+..-.+.|..+|-++.+.| +.++...+++++.-++ .|+..-|..+|+.-.. .-||.. .-..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~---~f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL---KFPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH---hCCCchHHHHH
Confidence 44567777777777777788888888888877 5566677777777554 4677788888876552 234433 3355
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHD--SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+..+.+.++-+.|..+|+... +..+ ..+|..++.--..-|+...+..+-+++.+..|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 6667778888888888887542 1122 456777777777778888888888888887774
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.14 Score=50.98 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=34.0
Q ss_pred HHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 007400 226 IVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELF 305 (605)
Q Consensus 226 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 305 (605)
++......+++++|..+-++..+--+.+|-...+-++...++++|.+ +|.+.|+..+|..++
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk------------------AfhkAGr~~EA~~vL 840 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK------------------AFHKAGRQREAVQVL 840 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH------------------HHHHhcchHHHHHHH
Confidence 44445555555555555555544333333333333444444444433 345566667777777
Q ss_pred HHHHH
Q 007400 306 TRMMI 310 (605)
Q Consensus 306 ~~m~~ 310 (605)
+++..
T Consensus 841 eQLtn 845 (1081)
T KOG1538|consen 841 EQLTN 845 (1081)
T ss_pred HHhhh
Confidence 66654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0095 Score=49.38 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+...++..+...|++++|...+++++..+|.+...+..++.+|...|+..+|.++|+.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455567778899999999999999999999999999999999999999999999998884
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.017 Score=51.36 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=34.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQS---SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
|+.++..+|++++|..+|..+.+..|++ +.++.-|+.+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5556666666666666666666654443 34455566666666666666666666544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.52 Score=41.90 Aligned_cols=158 Identities=18% Similarity=0.222 Sum_probs=95.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh-
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSV-KP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ- 467 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 467 (605)
+..-.+.|++++|...|+.+..... .| ...+...++.++.+.++++.|+...++..+.++-.|+.+ |...+.++..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 3344566777777777777765421 11 234566666666777777777777777765555555543 2222222221
Q ss_pred ------cCChHHHHHH-------HHhCC---CCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 468 ------AGCSDQLMNQ-------LEKMP---YEHDSYLW------------NALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 468 ------~g~~~~A~~~-------~~~~~---~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
..+...+.+. +++.+ ..+|+..- ..++..|.+.|.+..|..-++.+++..|+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 1122222222 22222 11332211 13566788999999999999999999776
Q ss_pred CCc---hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 520 SSA---THGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 520 ~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
... .+..+..+|.+.|..++|...-+-+..
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 554 555678889999999999998776654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.03 Score=43.24 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=70.8
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC---chHHHHHHHHHhcCC
Q 007400 463 ELLAQAGCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-PQSS---ATHGLLSSIYSALGK 536 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~ 536 (605)
-++...|+.+.|++.|.+. ..+.....|+.-+.++.-+|+.++|++-+++++++. |... ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888775 234577889999999999999999999999999983 3322 356677888999999
Q ss_pred chHHHHHHHHHHhCC
Q 007400 537 GRLVEKVRQLINERQ 551 (605)
Q Consensus 537 ~~~a~~~~~~~~~~~ 551 (605)
-++|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999998887766
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.36 Score=46.81 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI----TLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
...|+.+..+|...|++++|+..|++.++ +.|+.. +|..+..+|...|+.++|+..++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555566666666666666666555 345432 35555556666666666666666555
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.074 Score=42.60 Aligned_cols=90 Identities=14% Similarity=0.102 Sum_probs=61.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHH
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP----Y-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA---THGLLSSIY 531 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~ 531 (605)
.-.....+.|++++|.+.|+.+. . +-...+...++.++.+.|+++.|...+++.+++.|.++. ++...|-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 33445567788888888887762 1 223455667888999999999999999999999887764 444455555
Q ss_pred HhcCC---------------chHHHHHHHHHHh
Q 007400 532 SALGK---------------GRLVEKVRQLINE 549 (605)
Q Consensus 532 ~~~g~---------------~~~a~~~~~~~~~ 549 (605)
.++.. ..+|..-|+.+.+
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 55544 5566666666654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.42 Score=45.63 Aligned_cols=72 Identities=15% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC-------ChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 007400 256 TMVSGYAKLGDMESASKLFNEMPEK-------NPVSWTTLIAGYTR---NGLGQKALELFTRMMILRIRPNQHTFSSCLC 325 (605)
Q Consensus 256 ~li~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 325 (605)
.++-+|....+++...++.+.+... ....-...+-++.+ .|+.++|++++..+......++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444455556666666666666542 12222234445555 6788888888877665555677777776665
Q ss_pred HH
Q 007400 326 AC 327 (605)
Q Consensus 326 ~~ 327 (605)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.01 Score=34.44 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
..|..++..+...|++++|++.|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888899999999999999999998864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.092 Score=46.91 Aligned_cols=94 Identities=18% Similarity=0.119 Sum_probs=55.9
Q ss_pred ccCcHHHHHHHHHHchHhhCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHH
Q 007400 431 HSGLVQEGLTYFESMTHDLGII-PNQEHHACLIELLAQAGCSDQLMNQLEKM----PY-EHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 504 (605)
+.|++..|...|....+.+.-. -....+..|..++...|++++|...|..+ +. +.-+..+..|+.+....|+-+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3455666666666555322111 11334445666666666666666665544 21 223466667777777888888
Q ss_pred HHHHHHHHHHhcCCCCCchH
Q 007400 505 MGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~~~~~ 524 (605)
+|..+|+++++..|+.+.+-
T Consensus 233 ~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 233 EACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHHHHHCCCCHHHH
Confidence 88888888888888665543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.2 Score=48.62 Aligned_cols=142 Identities=10% Similarity=0.009 Sum_probs=82.4
Q ss_pred hHHHHHHHHhcC---CC-CC-cchHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007400 368 LNDGRQVFDLTD---NK-EN-SMLWNTMISALTQ---------HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433 (605)
Q Consensus 368 ~~~A~~~~~~~~---~~-~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 433 (605)
.+.|..+|.+.. .. |+ ...|..+..++.. ..+..+|.++.++.++.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456666776654 21 22 3445544444332 123345666667777643 225666666666667777
Q ss_pred cHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 007400 434 LVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEK-MPYEHDSY---LWNALHGVCRIHGNIDMGRK 508 (605)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~---~~~~l~~~~~~~g~~~~A~~ 508 (605)
+++.|...|++.. .+.|| ..+|........-+|+.++|.+.+++ +...|... +..-.+..|.. ...+.|..
T Consensus 353 ~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 7888888888776 66777 55666666777777888888887777 44444322 22222333433 34666666
Q ss_pred HHHHHH
Q 007400 509 VVDQLI 514 (605)
Q Consensus 509 ~~~~~~ 514 (605)
+|-+-.
T Consensus 429 ~~~~~~ 434 (458)
T PRK11906 429 LYYKET 434 (458)
T ss_pred HHhhcc
Confidence 665533
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0094 Score=34.59 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+|..++.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888999999999999999999999885
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.65 Score=42.10 Aligned_cols=146 Identities=13% Similarity=0.150 Sum_probs=84.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChH
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSD 472 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 472 (605)
.....|++.+|..+|....... +-+......++.+|...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 3456677777777777777642 223456666777777777777777777766421 11111111222334445555444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHH
Q 007400 473 QLMNQLEKMPYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 473 ~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
+..++-.++...| |...-..++..+...|+.+.|.+.+-.+++. .-.+...-..+..++...|.-+.+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444443233 5666666777777777777777777766665 233555666666666666654443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.047 Score=45.20 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchH----hhCCCCCHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHH 458 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 458 (605)
+...++..+...|++++|..+++++.. ..| |...+..++.++...|+...|.+.|+++.. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345566677788888888888888888 455 566888888888888998888888887642 45888876653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.032 Score=46.77 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=68.3
Q ss_pred HHHhcCChHHHHHHHHhCC--CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 464 LLAQAGCSDQLMNQLEKMP--YEH-----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~--~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
-+.+.|++++|..-|.+.. +++ ....|..-+.+..+.+.++.|+.-..+++++.|....++..-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3556677777776665531 111 133455556677889999999999999999999888888888999999999
Q ss_pred chHHHHHHHHHHhCCC
Q 007400 537 GRLVEKVRQLINERQF 552 (605)
Q Consensus 537 ~~~a~~~~~~~~~~~~ 552 (605)
+++|++-|+++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999987643
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.96 Score=40.73 Aligned_cols=193 Identities=17% Similarity=0.144 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC----CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDN----KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN- 427 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~- 427 (605)
.........+...+.+..+...+..... ......+......+...++...+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444445555555555555555544321 1133344444555555555666666666655532222 111222222
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CC-CHHHHHHHHHHHHhc
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIP----NQEHHACLIELLAQAGCSDQLMNQLEKMP-Y-EH-DSYLWNALHGVCRIH 500 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~-~~~~~~~l~~~~~~~ 500 (605)
++...|+++.|...+.+.. . ..| ....+......+...++.+.+...+.+.. . +. ....+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKAL-E--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHH-h--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 4556666666666666654 1 222 22333333333555666666666666542 1 22 245556666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++++.|...+..+....|.....+..++..+...|.++++...+.....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777777777665455555666666655666666666665544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.14 Score=46.72 Aligned_cols=148 Identities=9% Similarity=-0.045 Sum_probs=84.9
Q ss_pred HhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCcHH
Q 007400 363 SKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAV----ILNACTHSGLVQ 436 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~----l~~~~~~~g~~~ 436 (605)
...|+..+|...++++.+. .|..++..--.+|.-.|+.+.-...+++.... ..||...|.. +.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456666666666665432 25566666667777777777777777776654 3444432222 223344677777
Q ss_pred HHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 007400 437 EGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMPYEHD------SYLWNALHGVCRIHGNIDMGRKV 509 (605)
Q Consensus 437 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~ 509 (605)
+|.+.-++.. .+.|. .-....+...+.-.|++.++.+++.+-....+ ...|-..+-.+...+.++.|+++
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 7777766665 34433 44555666667777777777777776541111 01111223344555777777777
Q ss_pred HHHHH
Q 007400 510 VDQLI 514 (605)
Q Consensus 510 ~~~~~ 514 (605)
|++-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 76543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.39 Score=48.44 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=67.8
Q ss_pred CcHHHHHHHHHHchHhhCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHH
Q 007400 433 GLVQEGLTYFESMTHDLGIIPNQEHH-ACLIELLAQAGCSDQLMNQLEKMPY------EHDSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 433 g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~ 505 (605)
.+.+.|.++++.+. ..-|+...| -.-.+.+...|++++|++.|++... +-....+.-++..+....++++
T Consensus 247 ~~~~~a~~lL~~~~---~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEML---KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45566666666666 224553333 2233445666777777777765421 1123344456666777788888
Q ss_pred HHHHHHHHHhcCCCCCchHH-HHHHHHHhcCCc-------hHHHHHHHHHHh
Q 007400 506 GRKVVDQLIDQNPQSSATHG-LLSSIYSALGKG-------RLVEKVRQLINE 549 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~~~~ 549 (605)
|...+.++.+...-+...|. ..+.++...|+. ++|.+.++++..
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888877655545544 345556667777 677777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.54 Score=41.15 Aligned_cols=87 Identities=13% Similarity=-0.028 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchH
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP-------YEHDS-YLWNALHGVCRIHGNIDMGRKVVDQLIDQ----NPQSSATH 524 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~ 524 (605)
.+..+.+.|.+..++++|-..+.+-. .-++. ..+-..+-.+.-..++..|...++.--+. .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34444556666666666665554431 11222 22333444455556777888887775554 55566666
Q ss_pred HHHHHHHHhcCCchHHHHHH
Q 007400 525 GLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~ 544 (605)
..|..+|- .|+.+++..++
T Consensus 232 enLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhc-cCCHHHHHHHH
Confidence 67776663 46666665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.11 Score=41.24 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 415 VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 415 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
+.|+..+..+++.+|+..|++..|.++++.+.+.++++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 567777888888888888888888888888877777766677777766543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.13 Score=47.49 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHhccCcHHHHHHHHHHchH---hhCCCCCH----
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVK---P--DKITLAVILNACTHSGLVQEGLTYFESMTH---DLGIIPNQ---- 455 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~p~~---- 455 (605)
.++..++...+.++++++.|+...+---. | ....+..|...|....|+++|.-+..++.. ..++.--.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666666777777777766542111 1 113566666667777777777666554431 11221111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 456 -EHHACLIELLAQAGCSDQLMNQLEKMP----YEHDS----YLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 456 -~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.....+.-++...|...+|.+..++.. ...|. .....++..|...|+.+.|..-|+++...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 122233445556666666666655431 11222 23334566666777777777666666554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.24 Score=40.82 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=52.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007400 289 IAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368 (605)
Q Consensus 289 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (605)
...+...|++++|..+|+-+...+ ..+..-+..|..++-..+++++|...|......+ ..|+..+--...+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 344556677777777777666533 2233334444445555666777776666665544 23333344456666667777
Q ss_pred HHHHHHHHhcCCC
Q 007400 369 NDGRQVFDLTDNK 381 (605)
Q Consensus 369 ~~A~~~~~~~~~~ 381 (605)
+.|+..|+....+
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 7777766655544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=3.2 Score=43.41 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.++..+.+..+.+++..+.+..+ +-++..|..++..+++.+.++.-.+...++++.
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~ 765 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEA 765 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 45566777788888888888887 347888888888888888777666666666553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.68 E-value=1 Score=44.72 Aligned_cols=156 Identities=12% Similarity=0.137 Sum_probs=99.5
Q ss_pred HHHhcCChhHHHHHHHH-HHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCCh
Q 007400 26 SLISKGQLSEAISSLDL-LAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSD 104 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~-~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 104 (605)
..+-+|+++++.+.... -.-..+ +....+.+++.+.+.|-++.|+++- .++ ..-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~---------~D~----~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFV---------TDP----DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS---------S-H----HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhc---------CCh----HHHhHHHHhcCCH
Confidence 55567888887776651 111112 3556788888888889888888872 122 2345566788999
Q ss_pred hHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007400 105 VDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN 184 (605)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 184 (605)
+.|.++.++.. +...|..|.+...+.|+++-|.+.|.+.. -|..|+-.|.-.|+.+...++.+.....|-
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 99988887776 55688888899999999999998888875 467777778888888887777777666442
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHH
Q 007400 185 EFSFAGILTICVKLEELKLTRQVHG 209 (605)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (605)
++....++.-.|+.++..+++.
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444455555566666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.54 Score=47.41 Aligned_cols=159 Identities=11% Similarity=0.062 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCCcc---------hHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007400 356 SSLIDMYSKCGCLNDGRQVFDLTDNKENSM---------LWNTMISALTQ----HGYDEQAIRLFHDMVRSSVKPDKITL 422 (605)
Q Consensus 356 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 422 (605)
..++...+-.|+-+.+++.+......++.. .|...+..++. ..+.+.|.++++.+.+ .-|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 344444455555555555555433322222 23333333332 3466778888888887 46776544
Q ss_pred HHH-HHHHhccCcHHHHHHHHHHchHhhCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHH-H
Q 007400 423 AVI-LNACTHSGLVQEGLTYFESMTHDLGIIP--NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHG-V 496 (605)
Q Consensus 423 ~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~-~ 496 (605)
... .+.+...|+.+.|++.|++......--+ ....+..++..+.-.+++++|.+.+.++. ...+...|..+.. +
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 433 4456677888888888887652111111 23455667777888888998888888874 2333444444433 3
Q ss_pred HHhcCCH-------HHHHHHHHHHHhc
Q 007400 497 CRIHGNI-------DMGRKVVDQLIDQ 516 (605)
Q Consensus 497 ~~~~g~~-------~~A~~~~~~~~~~ 516 (605)
+...|+. ++|.++++++-..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 3456777 7777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.77 Score=45.63 Aligned_cols=133 Identities=19% Similarity=0.148 Sum_probs=70.3
Q ss_pred HHHHhcCChHHHHHHHH--HHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007400 158 IGYAKSGAVEEGLKFYK--VLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235 (605)
Q Consensus 158 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (605)
....-+++++++.+..+ .+.. .+ +....+.++..+.+.|..+.|.++.. |.. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 34455677777666654 1111 11 24446677777777777777777632 221 23455667777
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007400 236 LSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312 (605)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 312 (605)
++.|.++.+++. ++..|..|.....+.|+++-|++.|.+... +..|+-.|.-.|+.+.-.++.+.....|
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 777776666554 444666666666666666666666666543 4445555556666655555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.44 E-value=2.8 Score=40.80 Aligned_cols=149 Identities=11% Similarity=0.029 Sum_probs=78.9
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP---DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEH 457 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 457 (605)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|+..++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34567777777777788887777777776643211 2334444455556667777777777766631 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 458 HACLIELLAQAGCSDQLMNQ-LEKMPYEHDSYLWNALHGVCRIH------GNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
...+...+.. ..+..... ........-..++..++..+... +..+.+...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000122333344444444 788999999999999999888888888888
Q ss_pred HHhc
Q 007400 531 YSAL 534 (605)
Q Consensus 531 ~~~~ 534 (605)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2 Score=39.09 Aligned_cols=117 Identities=9% Similarity=0.066 Sum_probs=73.1
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHH---HHHHHHHHcCCHHH
Q 007400 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWN---TMISALTQHGYDEQ 402 (605)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~ 402 (605)
.....|++..|...|+...... +-+...-..++.+|...|+.+.|..++..++..-....+. .-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456778888888888877765 3445666678888999999999999998887542222222 22334444444443
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 403 AIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 403 a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333 45 45566666677777777777776665555
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.2 Score=38.41 Aligned_cols=178 Identities=17% Similarity=0.121 Sum_probs=100.2
Q ss_pred CChHHHHHHHHh-cCCCC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHH
Q 007400 366 GCLNDGRQVFDL-TDNKE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYF 442 (605)
Q Consensus 366 g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~ 442 (605)
|-+.-|+--|.. +...| -+..||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++.-.|+++-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHH
Confidence 444444444432 22233 345677777778888999999999988888 55532 33333333455678888888766
Q ss_pred HHchHhhCCCCCHHHHHHHHHHH-HhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 443 ESMTHDLGIIPNQEHHACLIELL-AQAGCSDQLMNQL-EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
...- .-.|+.. |..|.-.+ .+.-++.+|..-+ ++.. ..|..-|...+..+.- |++. -..+++++..-..++
T Consensus 157 ~~fY---Q~D~~DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFY---QDDPNDP-FRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDN 229 (297)
T ss_pred HHHH---hcCCCCh-HHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccch
Confidence 6655 2233322 22222222 2334666666544 4443 3444444332222211 2111 123344444332222
Q ss_pred -------CchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 521 -------SATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 521 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
.++|..|+.-+...|+.++|..+|+......+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 36888999999999999999999998876544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.12 Score=45.94 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=72.2
Q ss_pred HHHhhcC--CCCceeHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC-------------
Q 007400 140 NLFDNMA--ERDVVSWNTMIIGYAK-----SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE------------- 199 (605)
Q Consensus 140 ~~~~~~~--~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------- 199 (605)
..|.... ++|-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444443 3555566666655543 4567777778888999999999999999998775432
Q ss_pred ---ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007400 200 ---ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236 (605)
Q Consensus 200 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (605)
+-.-+.+++++|...|+.||..+-..|++++++.|..
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2245778999999999999999999999999887764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=2 Score=38.53 Aligned_cols=219 Identities=15% Similarity=0.123 Sum_probs=143.3
Q ss_pred CChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHhcccchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHH
Q 007400 296 GLGQKALELFTRMMILRIR-PNQHTFSSCLCACASIVSLKHGKQVHGFLIRT-NFRSNTIVMSSLIDMYSKCGCLNDGRQ 373 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 373 (605)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444555444443211 12345555566666666676666666666542 224445556666667777777778888
Q ss_pred HHHhcCCC-CC-cchHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 374 VFDLTDNK-EN-SMLWNTMIS-ALTQHGYDEQAIRLFHDMVRSSVKP----DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 374 ~~~~~~~~-~~-~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.+...... ++ ......... .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 77765532 12 222333333 68889999999999998866 333 23344444455677889999999999888
Q ss_pred HhhCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 447 HDLGIIPN--QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 447 ~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
...++ ...+..+...+...++++.|...+.... ..|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus 195 ---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 ---KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ---hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 33333 6778888888999999999999888763 2343 455555666666777899999999999999885
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.071 Score=41.31 Aligned_cols=57 Identities=11% Similarity=-0.004 Sum_probs=52.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+.+....|+.+.|++.|.+++.+.|.++.+|+.-+.++.-+|+.++|+.-+.+..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999888664
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.2 Score=37.17 Aligned_cols=134 Identities=11% Similarity=0.104 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhc-CChhHHHHHhccCC
Q 007400 37 ISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKC-GSDVDARKVFDKIP 115 (605)
Q Consensus 37 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~ 115 (605)
.+++..+.+.+++|+...+..++..+.+.|.+....+ ++..+.-+|+......+++.-... .-..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4666777888999999999999999999998765544 455666666653333333321110 01222333333333
Q ss_pred CCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007400 116 VKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRR 178 (605)
Q Consensus 116 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 178 (605)
..+..+++.+...|++-+|+++.+.....+...-..++.+..+.++...-..+|+-..+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556667777777777777777776555555556666666666666655555555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.9 Score=40.26 Aligned_cols=124 Identities=14% Similarity=0.094 Sum_probs=61.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC----CCC----CcchHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCC-CH------
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTD----NKE----NSMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKP-DK------ 419 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p-~~------ 419 (605)
++..++...+.++.+++.|+... ... ....+..|...|.+..|+++|.-+..+..+. .+.. |.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34445555555555555555321 111 1235566666666666666666554443321 0111 11
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHh---hCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHD---LGIIPN-QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
.....+.-++...|...+|.+.-++..+- .|-.+. ......+.+.|...|+.+.|..-|+.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12233344555666666666666555421 122222 33445566667777777776666654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.19 E-value=3 Score=40.95 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=79.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007400 288 LIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC 367 (605)
Q Consensus 288 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (605)
++.-.-+..++..-++.-++.++ +.|+..+.-.++ +--......++++++++..+.|-.. +.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~-----------lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEAS-----------LGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHh-----------hchhhh
Confidence 33334455556666666666665 356554433222 3334556788888888887655110 000000
Q ss_pred hHHHHHHHHhcCCC---CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 368 LNDGRQVFDLTDNK---ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 368 ~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
.+..-..++....+ +-..+-..+..++.+.|+.++|++.+++|.+....- +......|+.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00000111111111 122333446666777888888888888887642111 22367778888888888888888888
Q ss_pred Hch
Q 007400 444 SMT 446 (605)
Q Consensus 444 ~~~ 446 (605)
+..
T Consensus 320 kYd 322 (539)
T PF04184_consen 320 KYD 322 (539)
T ss_pred Hhc
Confidence 765
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.12 E-value=1.4 Score=35.49 Aligned_cols=90 Identities=13% Similarity=0.009 Sum_probs=70.8
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHH
Q 007400 15 LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRG--IRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSN 92 (605)
Q Consensus 15 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 92 (605)
.|...+.......++.|++.+|.+.|+.+...- .+-...+-..++.++.+.+++++|...++..++.+|..+.. .|.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa 86 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYA 86 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHH
Confidence 344555666667779999999999999998753 12244566778889999999999999999999999998887 888
Q ss_pred HHHHHHHhcCChh
Q 007400 93 HLISMYFKCGSDV 105 (605)
Q Consensus 93 ~l~~~~~~~g~~~ 105 (605)
..+.+++.....+
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877654443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.03 E-value=5.4 Score=41.80 Aligned_cols=51 Identities=8% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
-++..+.+..+++.+..+.+...+. ++..|-.++..+++.+..+...+...
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~ 760 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVY 760 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHH
Confidence 3556666667777777777777666 77777777777777765554444333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.052 Score=31.36 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+|..++..+...|++++|...|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677788888888888888888888888774
|
... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.90 E-value=1.7 Score=35.44 Aligned_cols=127 Identities=8% Similarity=0.048 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
....++..+...+.......+++.+...+ ..+....+.++..|++.+ .......++. .++.......+..+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHH
Confidence 34556666666677777777777777665 245556777777776543 3344444442 01112223355666
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 466 AQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH-GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
.+.+.++++.-++.+++. +...+..+... ++.+.|.+++++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 666677777777766651 11222223333 666777666664 224455555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.83 Score=44.63 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH--H
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL--A 466 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--~ 466 (605)
.+|.-..+..+...-++.-++.++ +.||..+...++ +-.......++.+++++..+. +- ..+ .... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~l---g~s~~~~ 241 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASL---GKSQFLQ 241 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhh---chhhhhh
Confidence 344445566677777777777777 667664332222 223345577888888877622 10 000 0000 0
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHhcCCchHHHHHH
Q 007400 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ--SSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
..|.. .+.+.+-..++-..+-..++.++.+.|+.++|.+.++.+++..|. +......|+.++...+.+.++..++
T Consensus 242 ~~g~~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 242 HHGHF---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred cccch---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 11111 111111111222334445677777888888888888888877654 3456777888888888888888888
Q ss_pred HHHHhCCCcCC
Q 007400 545 QLINERQFKKE 555 (605)
Q Consensus 545 ~~~~~~~~~~~ 555 (605)
.+..+....+.
T Consensus 319 ~kYdDi~lpkS 329 (539)
T PF04184_consen 319 AKYDDISLPKS 329 (539)
T ss_pred HHhccccCCch
Confidence 77654333333
|
The molecular function of this protein is uncertain. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.46 Score=37.75 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHH---------------HCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHH-c
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMM---------------ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR-T 346 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~---------------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~ 346 (605)
.++.+++.++++.|+.+....+++..= .....|+..+..+++.+|+..+++..|.++++.+.+ .
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344555555555555555555554321 122345555555555555555555555555555443 3
Q ss_pred CCCCChhHHHHHHH
Q 007400 347 NFRSNTIVMSSLID 360 (605)
Q Consensus 347 ~~~~~~~~~~~l~~ 360 (605)
+++.+..+|..|++
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444445554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.22 Score=32.23 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCC
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAP 599 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 599 (605)
....++.++.+.|++++|.+..+.+.+. +|+..++....+.+..+++.+|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 4567899999999999999999999873 67778888888888888888874
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.38 Score=44.09 Aligned_cols=161 Identities=13% Similarity=0.049 Sum_probs=122.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHH----HHHHHHHHhcC
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHH----ACLIELLAQAG 469 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g 469 (605)
...+|+..+|...++++++. .+.|...+...-.+|...|+...-...++++.. ...|+...| ..+.-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 45688999999999999985 455777888888999999999999999999883 335554433 34445567899
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHhcCCchHHHHH
Q 007400 470 CSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ----SSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 470 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
-+++|.+.-++.. .+.|...-.+....+...|++.++.++..+--..-.+ -.--|.+.+-.+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999998863 3456777788888999999999999998876554211 123455778888889999999999
Q ss_pred HHHHHhCCCcCCCc
Q 007400 544 RQLINERQFKKEQA 557 (605)
Q Consensus 544 ~~~~~~~~~~~~~~ 557 (605)
|+.-.-....++.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 98664444555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.43 Score=42.63 Aligned_cols=97 Identities=8% Similarity=0.085 Sum_probs=75.2
Q ss_pred HHHhhCC--CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccc-------------
Q 007400 272 KLFNEMP--EKNPVSWTTLIAGYTR-----NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV------------- 331 (605)
Q Consensus 272 ~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------- 331 (605)
+.|.... ++|-.+|-+.+..+.. .++.+-....++.|.+-|+.-|..+|+.|+..+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 4455554 4566677777766654 3667777788889999999999999999998875532
Q ss_pred ---chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007400 332 ---SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL 368 (605)
Q Consensus 332 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 368 (605)
+-+-+..++++|..+|+.||..+-..|++++.+.+..
T Consensus 135 YP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2355779999999999999999999999999987754
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.50 E-value=11 Score=44.78 Aligned_cols=307 Identities=10% Similarity=0.090 Sum_probs=169.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhcC----CCC--cchHHHHHHHHHhcCChHHHHHHHhh-CCCCChhhHHHHHHHHHhCCC
Q 007400 225 SIVDAYAKCGELSDARRLFDETD----ARD--VLTWTTMVSGYAKLGDMESASKLFNE-MPEKNPVSWTTLIAGYTRNGL 297 (605)
Q Consensus 225 ~l~~~~~~~g~~~~a~~~~~~~~----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 297 (605)
.+..+-.+++.+.+|...++.-. ..+ ..-+..+...|+..++.|....+... ...++. ..-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 45557778888999988888732 111 12233444478888888877777763 333332 233445667899
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCChHHHHHHHH
Q 007400 298 GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVM-SSLIDMYSKCGCLNDGRQVFD 376 (605)
Q Consensus 298 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~ 376 (605)
++.|...|+.+.+.+ ++...+++-++......|.+....-..+-..... .+....+ +.=+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999988764 3346677777777777777766665444333322 2222222 333445567777777666655
Q ss_pred hcCCCCCcchHHHH--HHHHHHcCCHH--HHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 377 LTDNKENSMLWNTM--ISALTQHGYDE--QAIRLFHDMVRSSVKP--------D-KITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 377 ~~~~~~~~~~~~~l--~~~~~~~g~~~--~a~~~~~~m~~~~~~p--------~-~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
.. +..+|... +..+.+..+-+ .-.+..+.+.+.-+.| + ...|..++....-. +.+.-.+.
T Consensus 1543 ---~~-n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~-- 1615 (2382)
T KOG0890|consen 1543 ---DR-NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEE-- 1615 (2382)
T ss_pred ---cc-cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHH--
Confidence 22 44555544 22332222211 1112333333221111 0 01222222221110 00111111
Q ss_pred HchHhhCCCCCHH------HHHHHHHHHHhcCChHHHHHHH---Hh------CC---CCCCHHHHHHHHHHHHhcCCHHH
Q 007400 444 SMTHDLGIIPNQE------HHACLIELLAQAGCSDQLMNQL---EK------MP---YEHDSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 444 ~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~---~~------~~---~~~~~~~~~~l~~~~~~~g~~~~ 505 (605)
..++.++.. .|..-+ .+.+...++.+-+ .+ |. ...-..+|...+..++..|.++.
T Consensus 1616 ----l~~~s~~~~s~~~sd~W~~Rl---~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1616 ----LKKVSYDEDSANNSDNWKNRL---ERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred ----hhccCccccccccchhHHHHH---HHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 113333321 121111 1222222222211 11 11 12236689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
|....-++.+..+ +..+...+..+...|+-..|+.++++-.+...
T Consensus 1689 A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1689 AQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9999888887763 78899999999999999999999998886654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.2 Score=34.78 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=18.3
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 324 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
+..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333444444444454444443 2344445555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.077 Score=31.20 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
|..|+..|.+.|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=4.5 Score=37.65 Aligned_cols=219 Identities=8% Similarity=-0.051 Sum_probs=85.8
Q ss_pred CCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCCChhhHHH
Q 007400 115 PVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAV----EEGLKFYKVLRRFSISCNEFSFAG 190 (605)
Q Consensus 115 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~~~~~ 190 (605)
.++|..+....+.++...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+... .|+...-..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3444444444555555544433222222222234444444445555555542 3445555544221 234444444
Q ss_pred HHHHHhccCCh-----HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 007400 191 ILTICVKLEEL-----KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265 (605)
Q Consensus 191 ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 265 (605)
.+.+++..+.. ..+...+.... ..++..+-...+.++++.|+.+....+..-+..+|...-...+.+++..+
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 44444333211 11112211111 12244444445555555555333333333333334433333334444332
Q ss_pred -ChHHHHH-HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHH
Q 007400 266 -DMESASK-LFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343 (605)
Q Consensus 266 -~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 343 (605)
+...+.. +...+..++..+....+.++.+.|+ ..|+..+-+..+.+. .....+.++...|+. .|...+..+
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 1122222 2222333455555555555555555 234444434333221 122344444444443 344444444
Q ss_pred HH
Q 007400 344 IR 345 (605)
Q Consensus 344 ~~ 345 (605)
.+
T Consensus 261 ~~ 262 (280)
T PRK09687 261 LY 262 (280)
T ss_pred Hh
Confidence 43
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.084 Score=31.02 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999854
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.27 E-value=7.9 Score=40.25 Aligned_cols=273 Identities=9% Similarity=0.004 Sum_probs=152.5
Q ss_pred HHHHHHHhhCCCC-ChhhHHHHHHH-----HHhCCChHHHHHHHHHHHH-------CCCCCChHHHHHHHHHHhccc---
Q 007400 268 ESASKLFNEMPEK-NPVSWTTLIAG-----YTRNGLGQKALELFTRMMI-------LRIRPNQHTFSSCLCACASIV--- 331 (605)
Q Consensus 268 ~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~--- 331 (605)
..|..+++...+. ++..-..+... +....+++.|+.+|+.+.. .| +......+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 4455555555432 33332222222 3344677778877777765 44 2223444455554432
Q ss_pred --chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcCCCCCcchHHHHHHHHHH----cCCHHHHH
Q 007400 332 --SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK-CGCLNDGRQVFDLTDNKENSMLWNTMISALTQ----HGYDEQAI 404 (605)
Q Consensus 332 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 404 (605)
+.+.|..++....+.| .|+....-..+..... ..+...|.+.|........+..+..+..+|.. ..+...|.
T Consensus 306 ~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 5667888888877777 3443333222222222 23567888888877766566655555554433 34778888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH---Hh----cCChHHHHHH
Q 007400 405 RLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL---AQ----AGCSDQLMNQ 477 (605)
Q Consensus 405 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~~A~~~ 477 (605)
.++++..+.| .|....-...+..+.. +.++.+.-.+..+. ..+..-....-..+.... .. ..+.+.+...
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA-ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH-HhhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 8888888877 4443333333334444 66666555555554 323332211111111111 11 1245566677
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-C--CchHHHHHHHHHHhC
Q 007400 478 LEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL-G--KGRLVEKVRQLINER 550 (605)
Q Consensus 478 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~ 550 (605)
+.+...+-+......+...|.. ..+++.|...|.++.+.. +.....++.++... | .+..|.+++++..+.
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 7766555566666666555533 246888888888887776 67777888888763 2 257888888877654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.7 Score=34.85 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=82.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHH-----HHHHHh
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACL-----IELLAQ 467 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~ 467 (605)
+++.+..++|+.-|..+.+.|..--+. ............|+...|...|+++-.+ .|.+.....+ ..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 456788889999999988877543222 3333444567889999999999998743 2222222222 234677
Q ss_pred cCChHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 468 AGCSDQLMNQLEKMPYEHD---SYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 468 ~g~~~~A~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
.|.+++....++-+..+.+ ......|+-+-.+.|++..|.+.|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8899998888887742322 34556777788899999999999998877
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.12 Score=29.38 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
+..++.++.+.|++++|.+.|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344566667777777777777777777774
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.96 E-value=9.8 Score=40.21 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=53.9
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 397 HGYDEQAIRLFHDMVRSS-VKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~-~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
..+.+.|..++....... +.+.. .....+.......+..+++...++... ....+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~---~~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI---MRSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc---cccCCcHHHHHHHHHHHHccCHHH
Confidence 345566666666654332 22222 133333333333322445555555443 111233334444444456667777
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007400 474 LMNQLEKMPY--EHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513 (605)
Q Consensus 474 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (605)
+...+..|+. .....-..=++.++...|+.++|...|+++
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666641 111111122444545567777777777765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.93 E-value=5.4 Score=37.16 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=13.4
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 007400 496 VCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~ 514 (605)
.+.+.++|+.|...|+-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556778888888877554
|
It is also involved in sporulation []. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.87 Score=35.84 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 486 DSYLWNALHGVCRIHG---NIDMGRKVVDQLID-QNPQS-SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+..+...+++++.... +..+.+.+++.+++ ..|.. ....+.|+-.+.+.|+|+.++++.+.+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444555554432 34455556666654 33322 23344555566666666666666665544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.47 E-value=7.9 Score=37.58 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE------NSMLWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
...++..++..+.+.|+++.|...+..+.... .+.....-++.+...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456666677777777777777766655421 334444556666777777777777777666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.47 Score=43.23 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++..++..+...|+++.+.+.+++.+..+|-+...|..+..+|.+.|+...|+..|+.+..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4444555666666666666666666666666666666666666666666666666666543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.37 E-value=5.1 Score=35.12 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=11.0
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007400 394 LTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~ 412 (605)
|.+.+++.+|...++..++
T Consensus 83 cykk~~~~eAv~cL~~aie 101 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIE 101 (288)
T ss_pred HhhccChHHHHHHHHHHHH
Confidence 3344566666666666554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.31 E-value=3.2 Score=34.18 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=28.1
Q ss_pred hccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 430 THSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 430 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
...++.+++..++..+. -+.|. +..-..-...+.+.|++.+|..+|+++.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556666666666665 44454 2222333445566677777777776653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.34 Score=30.00 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD 418 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 418 (605)
+|..+...|...|++++|+++|++.++ ..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcC
Confidence 455666777777777777777777777 3454
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.10 E-value=4.6 Score=33.79 Aligned_cols=136 Identities=11% Similarity=0.112 Sum_probs=70.7
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC
Q 007400 170 LKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR 249 (605)
Q Consensus 170 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 249 (605)
.++++.+.+.+++|+...+..+++.+.+.|++..-.+ ++..++-+|.......+-.+.. ....+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~--~~~~~~--------- 78 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGN--QYPPAY--------- 78 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHc--cChHHH---------
Confidence 3455666677787888888888888877777654433 3444544554443333322221 111111
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS 329 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 329 (605)
.-|.+++.++. ..+..++..+...|++-+|+++.+.... .+......++.+..+
T Consensus 79 ------------------Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~ 132 (167)
T PF07035_consen 79 ------------------QLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAAN 132 (167)
T ss_pred ------------------HHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHH
Confidence 12223333332 1234455566677777777776665422 112223445566666
Q ss_pred ccchHHHHHHHHHHHHc
Q 007400 330 IVSLKHGKQVHGFLIRT 346 (605)
Q Consensus 330 ~~~~~~a~~~~~~~~~~ 346 (605)
.+|...-..+++...+.
T Consensus 133 ~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 133 SNDDQLFYAVFRFFEER 149 (167)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666655666555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=5 Score=34.18 Aligned_cols=90 Identities=9% Similarity=0.115 Sum_probs=58.9
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEKMPYEH--DSYLWNALHGVCR 498 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~ 498 (605)
+...+...|+++.|...++... +.+-| ..+--.|.+.....|.+++|+..++... .+ .......-+.++.
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l---~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill 170 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQAL---AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHH
Confidence 3445677888888888887666 22222 1222345566777888888888887765 22 2223344566778
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 007400 499 IHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~p 518 (605)
..|+-++|+..|+++++..+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 171 AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HcCchHHHHHHHHHHHHccC
Confidence 88888888888888888764
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.82 Score=36.85 Aligned_cols=72 Identities=13% Similarity=0.120 Sum_probs=40.4
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 467 QAGCSDQLMNQLEKMP-YEHDSYLWN-ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
..++++++..+++.+. ..|+..... .-+..+...|++++|..+++.+.+..|..+..--.++.++...|+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 4666666666666652 233322222 22345556677777777777766666544555555566666556543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.78 E-value=6.1 Score=34.67 Aligned_cols=121 Identities=10% Similarity=0.153 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CcHHHHHHHHHHchHhh-CCCCC---HHHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS-GLVQEGLTYFESMTHDL-GIIPN---QEHHACL 461 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~-~~~p~---~~~~~~l 461 (605)
...-|..|...|++..|-.....+-+ .|... .+++.|+..|+..-.-+ |-..+ ...+-..
T Consensus 96 L~~aieIyt~~Grf~~aAk~~~~iaE---------------iyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv 160 (288)
T KOG1586|consen 96 LEKAIEIYTDMGRFTMAAKHHIEIAE---------------IYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV 160 (288)
T ss_pred HHHHHHHHHhhhHHHHHHhhhhhHHH---------------HHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 44455667777777766554333222 22211 34455555555443111 11111 2233344
Q ss_pred HHHHHhcCChHHHHHHHHhCC---CCCC-----HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCc
Q 007400 462 IELLAQAGCSDQLMNQLEKMP---YEHD-----SYLWNALHGVCRI-HGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~---~~~~-----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
...-...+++.+|+++|++.. ...+ +.-|..-...|-- ..+.-.+...+++-.+++|.-..
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 445567788889999988752 1122 2222222333333 37777888888888888885443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.86 Score=37.45 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=55.8
Q ss_pred HHHHHHHHH---HHhcCChHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 456 EHHACLIEL---LAQAGCSDQLMNQLEKMP-YEHDSYLWN-ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 456 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
.+...|+.. -.+.++.+++..+++.+. ..|...... .-+..+..+|++.+|+.+++.+.+..|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344444443 356778888888888763 345444333 335566788888888888888877777777667777777
Q ss_pred HHhcCCch
Q 007400 531 YSALGKGR 538 (605)
Q Consensus 531 ~~~~g~~~ 538 (605)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 77777644
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.59 E-value=1.2 Score=40.73 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..+.+-.+|.+.++++.|+.+.+.++.+.|+++.-+...|-+|.+.|.+..|..-++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345667788999999999999999999999999999999999999999999999999887653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.9 Score=37.92 Aligned_cols=168 Identities=8% Similarity=-0.033 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH 431 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 431 (605)
.|..-..+|....++++|...+.+..+ ..+...| ...+-++.|.-+.+++.. +.--...|......|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf-------hAAKayEqaamLake~~k--lsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF-------HAAKAYEQAAMLAKELSK--LSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHH
Confidence 444555566666677776665554331 1011111 112334555566666655 22222355666666777
Q ss_pred cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCH
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--------YEHDSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 503 (605)
.|.++-|-..+++.-+ ....-++++|+++|++.. .+.-...+......+.+...+
T Consensus 104 ~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 7777766666665431 112233444444444320 001122334455677777888
Q ss_pred HHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 504 DMGRKVVDQLIDQ------NPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 504 ~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
++|-..+.+-... .|.-...+...+.+|.-..++..|...++.-
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 8888888777766 2322344666677777778888888888744
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=9.5 Score=35.49 Aligned_cols=134 Identities=15% Similarity=0.039 Sum_probs=59.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-cHHHHHHHHHHchHhhCCCCCHHHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG-LVQEGLTYFESMTHDLGIIPNQEHHACL 461 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l 461 (605)
+..+-...+.++.+.++ .+++..+-.+.+ .+|...-...+.++...+ ..+.+...+..+. ..++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L----~D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAML----QDKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----cCCChHHHHHH
Confidence 33333344444444443 334444444443 233334444444444332 1233444444333 12344445555
Q ss_pred HHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 462 IELLAQAGCSDQLMNQL-EKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
+.++.+.|+. +|...+ +.+. .++ .....+.++...|.. +|+..+.++.+..| |..+.....++
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a 276 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDK 276 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHH
Confidence 5556665553 333333 3333 222 223344555555553 56666666666655 44444333333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.37 Score=44.26 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=73.4
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
-..-|.+.|.+++|+.+|...+ .+.| ++.++..-..+|.+..++..|..-.+... ...-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999887 5667 77788888889999999988877666543 1111234444455555668
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 502 NIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
+..+|.+-++.++++.|.+...--.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 89999999999999999755443333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.53 Score=43.27 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=62.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA 468 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 468 (605)
..-|.+.|.+++|+..|.+... +.| |++++..-..+|.+...+..|..-...+. .+.-. ...|+.-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai---aLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI---ALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH---HhhHHHHHHHHHHHHHHHHH
Confidence 5568999999999999998888 677 88999999999999999888877666655 11111 22333333333445
Q ss_pred CChHHHHHHHHhC-CCCCCH
Q 007400 469 GCSDQLMNQLEKM-PYEHDS 487 (605)
Q Consensus 469 g~~~~A~~~~~~~-~~~~~~ 487 (605)
|...+|.+-++.. ..+|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 5566666555553 345653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.90 E-value=4.5 Score=34.53 Aligned_cols=94 Identities=9% Similarity=-0.022 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCH------HH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQ------EH 457 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 457 (605)
.+..+...|.+.|+.+.|.+.|.++.+....|.. ..+..+++.....+++..+...+.++..-.....+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555566666666666666666666665444433 255556666666666666666666654211111111 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
|..| .+...|++.+|-+.|-..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 234456777777776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.41 Score=39.36 Aligned_cols=129 Identities=13% Similarity=0.177 Sum_probs=72.7
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChH
Q 007400 57 FILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136 (605)
Q Consensus 57 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (605)
.++..+.+.+.+....++++.+...+...+.. .++.++..|++.++.++..+.++.... .-...+++.|.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~-~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPD-LHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHH-HHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHH-HHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 35566666777777777777777666554455 777888888888777777777773332 33345666666777777
Q ss_pred HHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 007400 137 HARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE 200 (605)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 200 (605)
+|.-++.++...+.. +..+...++++.|.+.+... ++...|..+++.|...+.
T Consensus 88 ~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 88 EAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 766666665431110 11122233444444222221 346666666666655443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.68 E-value=5.5 Score=31.42 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
....+..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344455566666666666666666542 35566666666667777777666666666665
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.61 E-value=7.1 Score=36.57 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHhhh--cC----ChhHHHHHHHHHHHhCCCC
Q 007400 33 LSEAISSLDLLAQRGIRLPAETLAFILQQCAE--SK----SLKLGKRVHLHLKLTQRKT 85 (605)
Q Consensus 33 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~ 85 (605)
+++.+++++.|.+.|+.-+..+|.+.+-.... .. ...++..+|+.|.+..+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 34455778888888887777666664433322 22 2456888888888887653
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.59 E-value=17 Score=36.84 Aligned_cols=178 Identities=12% Similarity=0.072 Sum_probs=93.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 007400 251 VLTWTTMVSGYAKLGDMESASKLFNEMPEK---NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCAC 327 (605)
Q Consensus 251 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 327 (605)
..+|..-+.--...|+.+...-.|++..-| =...|-..+......|+.+.|..++....+--++-...+-..-...+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 346666677777777777777777776654 12234444444445577777777666655543322222222222233
Q ss_pred hcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH---HHHHhcCC-CCCcchHHHHHHH-----HHHcC
Q 007400 328 ASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR---QVFDLTDN-KENSMLWNTMISA-----LTQHG 398 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~-~~~~~~~~~l~~~-----~~~~g 398 (605)
-..|++..|..+++.+.+.- +.-..+-..-+....+.|+.+.+. +++....+ +-+......+.-- +.-.+
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 44567777777777776654 222333333445556666666666 33333221 1122222222222 22246
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007400 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 430 (605)
+.+.|..++.++.+. ++++...|..+++-+.
T Consensus 456 d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 456 DADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred CHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 666777777766664 3334445555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.53 E-value=7.2 Score=32.47 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=46.1
Q ss_pred HHHhcCChHHHHHHHHhcCCC-CCcchHHHHH-----HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 007400 361 MYSKCGCLNDGRQVFDLTDNK-ENSMLWNTMI-----SALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGL 434 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 434 (605)
.....|+...|...|+++... +.+....-+. -.+..+|.++......+.+-..+-+-....-..|.-+-.+.|+
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 345556666666666665532 1222221111 1244566666666666555443322222344455556667777
Q ss_pred HHHHHHHHHHchHh
Q 007400 435 VQEGLTYFESMTHD 448 (605)
Q Consensus 435 ~~~a~~~~~~~~~~ 448 (605)
+..|..+|..+..+
T Consensus 183 ~a~A~~~F~qia~D 196 (221)
T COG4649 183 FAKAKSWFVQIAND 196 (221)
T ss_pred hHHHHHHHHHHHcc
Confidence 77777777776633
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.8 Score=39.54 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchH----hhCCCCCHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHHAC 460 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 460 (605)
++..++..+...|+.+.+...++++... .| +...|..++.+|.+.|+...|+..|+.+.+ +.|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4455566666666677777777776663 34 556677777777777777777766666543 3466666555444
Q ss_pred HHH
Q 007400 461 LIE 463 (605)
Q Consensus 461 l~~ 463 (605)
+..
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.33 E-value=21 Score=37.42 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=41.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007400 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 422 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 501 (605)
....+..|.+.|-+++-.-++.+|- .+..+|.-.--+.+++++|+++.++ +.|...|..|+..+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCc
Confidence 4445555666666666666665553 1222333333455667777776665 358888888887766544
Q ss_pred CHHHHH
Q 007400 502 NIDMGR 507 (605)
Q Consensus 502 ~~~~A~ 507 (605)
.+-.++
T Consensus 705 e~~~~l 710 (846)
T KOG2066|consen 705 EFIKAL 710 (846)
T ss_pred HHHHHH
Confidence 443333
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.30 E-value=3.6 Score=35.06 Aligned_cols=105 Identities=5% Similarity=0.008 Sum_probs=62.2
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN---QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD-SYLWNALHGVCRIHGNI 503 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~ 503 (605)
+...|++++|..-|..+.....-.+. ...|..-..++.+.+.++.|++-..+. ...|. ......-+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44556666666666665521111111 223444455666777777777666554 22232 23333445677788899
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
+.|++-|+++++.+|....+-...+.+--.
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 999999999999999766555555544333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.13 Score=42.26 Aligned_cols=51 Identities=6% Similarity=0.028 Sum_probs=22.2
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007400 194 ICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244 (605)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (605)
.+.+.+.+.....+++.+...+...+....+.++..|++.+..+...++++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 333344444444444444443333344444455555555544444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.54 Score=28.47 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.+++.++..|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35566667777777777777777776654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.85 Score=29.54 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
...++.++.+.|++++|++..+.+++.+|+|..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456778899999999999999999999987765543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.93 E-value=8.7 Score=32.79 Aligned_cols=91 Identities=16% Similarity=0.062 Sum_probs=67.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMPYEHDSY-----LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
.+...+..+|++++|...++.....+... +-..|+......|.++.|+..++...+..= .+.....-++++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 44567889999999999998653223222 233467778899999999998887654321 223355679999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 007400 535 GKGRLVEKVRQLINERQ 551 (605)
Q Consensus 535 g~~~~a~~~~~~~~~~~ 551 (605)
|+.++|+..|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999988764
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.89 E-value=6.3 Score=36.93 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCc--HHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 401 EQAIRLFHDMVRSSVKPDKI--TLAVILNACTHSGL--VQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
+.++.+|+.+.+.|+..+.. ....++..+..... ..++..+++.+. +.++++....|..++-..
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHHH
Confidence 45677788888878776432 44444433333222 447778888888 558888777766655443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.34 Score=27.74 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=25.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..+..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.12 Score=47.37 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=74.0
Q ss_pred hcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007400 467 QAGCSDQLMNQLEKM-PYE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
..|.++.|++.+... ..+ +....|..-..++.+.+....|++-+..+++++|+....|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456777888777664 233 344455556777888888888999999999999998888888888888899999999999
Q ss_pred HHHHhCCCcCCCceeEEEE
Q 007400 545 QLINERQFKKEQAISWIEI 563 (605)
Q Consensus 545 ~~~~~~~~~~~~~~s~~~~ 563 (605)
....+.++....+...-++
T Consensus 206 ~~a~kld~dE~~~a~lKeV 224 (377)
T KOG1308|consen 206 ALACKLDYDEANSATLKEV 224 (377)
T ss_pred HHHHhccccHHHHHHHHHh
Confidence 9888888776655444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.03 E-value=35 Score=37.82 Aligned_cols=166 Identities=10% Similarity=0.095 Sum_probs=82.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 007400 292 YTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDG 371 (605)
Q Consensus 292 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 371 (605)
-..+.++.+=+-+++++.+. +++..-|. |. ...++++.|...+..+. ...|.-.++.-.+.|.+.+|
T Consensus 861 q~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~a 927 (1265)
T KOG1920|consen 861 QKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEA 927 (1265)
T ss_pred HHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhh
Confidence 34455666666666666532 22222221 00 11234444444333332 22333444445555666666
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCC
Q 007400 372 RQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451 (605)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 451 (605)
..++..-.++ -...|.+....+...+.+++|.-.|+..=+ ..-.+.+|..+|+|.+|+.+-.++. . +-
T Consensus 928 L~ly~~~~e~-~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~-~-~~ 995 (1265)
T KOG1920|consen 928 LALYKPDSEK-QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLS-E-GK 995 (1265)
T ss_pred hheeccCHHH-HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhc-C-CH
Confidence 6555432222 223445555555666666766666654322 1223556667777777777776654 1 11
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 452 IPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
.--..+-..|+.-+...++.-+|-++..+..
T Consensus 996 de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 996 DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 1112223556666777777777777776654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.29 Score=28.25 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhcCChHHH
Q 007400 455 QEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A 474 (605)
...|..|..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.66 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455666666667777777777766666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.86 E-value=53 Score=39.59 Aligned_cols=62 Identities=11% Similarity=-0.003 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
..+|-...+....+|+++.|...+-+.....-+..+.-.+......|+...|+.++++.++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 56788888888889999999987766532224455556677788899999999999999976
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.79 E-value=14 Score=38.40 Aligned_cols=186 Identities=11% Similarity=0.140 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcc----------hHHHHHHHHHHcCCHH
Q 007400 335 HGKQVHGFLIRTNFRSN---TIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM----------LWNTMISALTQHGYDE 401 (605)
Q Consensus 335 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~ 401 (605)
+-..++.+|.++--.|+ ..+...++-.|....+++...++.+.+..-||.. .|...+.---+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 33455666665433333 4455666667777778888888877666544322 1222222223457778
Q ss_pred HHHHHHHHHHHCC--CCCCHHHHHH-------HHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcC-Ch
Q 007400 402 QAIRLFHDMVRSS--VKPDKITLAV-------ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG-CS 471 (605)
Q Consensus 402 ~a~~~~~~m~~~~--~~p~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~ 471 (605)
+|+...-.+++.. +.||..+... +-..|...+..+.|..+|++.. .+.|+...--.+...+...| ++
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhc
Confidence 8888777776543 5566542211 1223455667788888888876 66776443333333333333 23
Q ss_pred HHHHHHHH------hC-CCCCC----HHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007400 472 DQLMNQLE------KM-PYEHD----SYLWN--ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 472 ~~A~~~~~------~~-~~~~~----~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
+...++-. .+ ..+.. ...|. ....+-.-++++.+|....+.|.++.|.....
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYL 402 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYL 402 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehH
Confidence 32222110 00 11111 11121 13445556789999999999999998855443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.78 E-value=17 Score=33.87 Aligned_cols=23 Identities=4% Similarity=-0.340 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHH
Q 007400 526 LLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 526 ~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.-+..+.+.++|++|.+.|+...
T Consensus 251 ~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 251 NKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH
Confidence 34666788999999999988554
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.77 E-value=37 Score=37.67 Aligned_cols=79 Identities=6% Similarity=-0.002 Sum_probs=40.4
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 462 IELLAQAGCSDQLMNQLEKMPYEHDSYL--WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
+.+|..+|++.+|+.+..++....|... -..|..-+..+++.-+|-++.....+. ...-...|++...|++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhHHHH
Confidence 3445555555555555555542223222 134555666666666665555544332 1123345555666777
Q ss_pred HHHHHHHH
Q 007400 540 VEKVRQLI 547 (605)
Q Consensus 540 a~~~~~~~ 547 (605)
|.++....
T Consensus 1045 Alrva~~~ 1052 (1265)
T KOG1920|consen 1045 ALRVASKA 1052 (1265)
T ss_pred HHHHHHhc
Confidence 77665543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.74 E-value=2.5 Score=36.06 Aligned_cols=91 Identities=8% Similarity=-0.049 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCC---C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchH----
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMPY---E--HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ--NPQSSATH---- 524 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~---- 524 (605)
..+..++..|.+.|+.+.|.+.+.++.. . .-...+..++......+++..+...+.++... .+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3555666677777777777777766531 1 12334555666666777777777777777665 22222211
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 007400 525 GLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
..-+-.+...|++.+|.+.|-.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHc
Confidence 1223344456777777766643
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.47 E-value=6 Score=34.97 Aligned_cols=61 Identities=7% Similarity=-0.130 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..+..++...|++-++++....++...|.|..+|+.-+.+....=+.++|..-|..+++.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3344556677899999999999999999999999999999998888888898888888764
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.53 Score=25.11 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHH
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777776664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.76 Score=25.32 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.|..++..+...|+++.|...++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555666666666666666666666655
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.90 E-value=34 Score=36.04 Aligned_cols=141 Identities=13% Similarity=0.196 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-CChhhHHHHHHHHHhCCChH
Q 007400 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE-KNPVSWTTLIAGYTRNGLGQ 299 (605)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 299 (605)
.+....+..+...|++++|-...-.|...+..-|...+..+...++......++-.-.. -++..|..++..+.. .+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~ 471 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK 471 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH
Confidence 34455666666777777777777777666666666666666666655544444433332 255667777776666 2222
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 300 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
-|.+..+ ..+...|..+.-.-+.. .+..+. ..+...-..|+..|...++++.|..++-...
T Consensus 472 ----~F~e~i~---~Wp~~Lys~l~iisa~~----------~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 472 ----GFLELIK---EWPGHLYSVLTIISATE----------PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred ----HHHHHHH---hCChhhhhhhHHHhhcc----------hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 2222222 12223332222111111 111111 1122233448888888899999988887766
Q ss_pred CC
Q 007400 380 NK 381 (605)
Q Consensus 380 ~~ 381 (605)
.+
T Consensus 533 ~~ 534 (846)
T KOG2066|consen 533 DK 534 (846)
T ss_pred Ch
Confidence 54
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.84 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.074 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+|..++.+|...|++++|...|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998865
|
... |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.11 E-value=36 Score=36.01 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=39.5
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcC---CCCceeHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCChh
Q 007400 118 NLFSYNNMLSGYANLGMMKHARNLFDNMA---ERDVVSWNTMIIGYAKSGA-------VEEGLKFYKVLRRFSISCNEF 186 (605)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~ 186 (605)
+...-..+|-.|.+.|++++|.++..... ......+-..+..|..+.+ -++...-|++..+.....|+.
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33445577888899999999999984433 2344556666777765432 235555566655543322443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=87.83 E-value=40 Score=35.70 Aligned_cols=157 Identities=10% Similarity=0.059 Sum_probs=85.6
Q ss_pred hHHHHHHHHH-hcCChhHHHHHhccCC----CCCc-----hHHHHHHHHHHccCChHHHHHHHhhcCC---C-Cc----e
Q 007400 90 LSNHLISMYF-KCGSDVDARKVFDKIP----VKNL-----FSYNNMLSGYANLGMMKHARNLFDNMAE---R-DV----V 151 (605)
Q Consensus 90 ~~~~l~~~~~-~~g~~~~a~~~~~~~~----~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~---~-~~----~ 151 (605)
++-.+...+. ...+++.|+..+++.. +++. .....++..+.+.+... |...+++..+ . .. .
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3444555554 5677888887777653 1111 12234456666665554 7777766542 1 11 1
Q ss_pred eHHHH-HHHHHhcCChHHHHHHHHHHHhCC---CCCChhhHHHHHHHHh--ccCChHHHHHHHHHHHHhCC---------
Q 007400 152 SWNTM-IIGYAKSGAVEEGLKFYKVLRRFS---ISCNEFSFAGILTICV--KLEELKLTRQVHGQVLVTGF--------- 216 (605)
Q Consensus 152 ~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~--------- 216 (605)
.+..+ +..+...+++..|.+.++.....- ..|-...+..++.+.. +.+..+.+.+.++.+.....
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 22222 222223478888999988876522 2333444445555443 45556667776666644322
Q ss_pred CCChhHHHHHHHH--HHhcCChHHHHHHHhhcC
Q 007400 217 LSNVVISSSIVDA--YAKCGELSDARRLFDETD 247 (605)
Q Consensus 217 ~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 247 (605)
.|...+|..+++. +...|+++.+...++++.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345566666665 445777777777766654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.76 E-value=0.68 Score=26.16 Aligned_cols=28 Identities=21% Similarity=0.080 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++..++.++.+.|++++|.++|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.34 E-value=10 Score=28.41 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 402 QAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 402 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
+..+-+..+....+.|++......+.+|.+.+++..|.++++-+..+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 456667777777788999999999999999999999999999887554433 336665553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.30 E-value=19 Score=31.37 Aligned_cols=177 Identities=13% Similarity=0.073 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHH--HHHHcCCHHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMIS--ALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~ 411 (605)
.-|+--|.+..... |.-+.+||-|.-.+...|+++.|.+.|+...+-....-|..+=+ ++.--|++.-|.+-+...-
T Consensus 82 ~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 82 ALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 33333344443332 33456788888888888999999999987665411222322222 2334678888887777666
Q ss_pred HCCCCCCHHHHHHHHHHHhccCcHHHHHHHH-HHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC------C
Q 007400 412 RSSVKPDKITLAVILNACTHSGLVQEGLTYF-ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPY------E 484 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~ 484 (605)
+. .|+...-...+..-...-++.+|..-+ ++.. +..-+..-+ .++..|...=..+.+.+-...-.. +
T Consensus 161 Q~--D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~-~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae 234 (297)
T COG4785 161 QD--DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGW-NIVEFYLGKISEETLMERLKADATDNTSLAE 234 (297)
T ss_pred hc--CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhH-HHHHHHHhhccHHHHHHHHHhhccchHHHHH
Confidence 64 333221111111222334556665443 3333 222222222 223333222223333333322210 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.-..+|..++.-+...|+.++|..+|+-++..+
T Consensus 235 ~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 235 HLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 123567778888889999999999999888764
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.05 E-value=5.4 Score=36.65 Aligned_cols=102 Identities=12% Similarity=0.180 Sum_probs=70.3
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcc-----hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007400 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSM-----LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419 (605)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 419 (605)
..|.+.+..+...++..-....+++.+...+-.+...|+.. +-...++. +..=++++++.++..=+.-|+-||.
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 34555566666666666666777888887776665443221 11122222 2334677888888888888999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTH 447 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 447 (605)
.+++.+++.+.+.+++.+|.++...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999888888777663
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.93 E-value=2.4 Score=35.58 Aligned_cols=16 Identities=13% Similarity=0.486 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 007400 503 IDMGRKVVDQLIDQNP 518 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p 518 (605)
+++|...|+++.+.+|
T Consensus 96 F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3445555555555555
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.73 E-value=1.3 Score=27.37 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 525 GLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..|+.+|...|+.+.|.++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468999999999999999999887643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=86.70 E-value=33 Score=33.42 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=80.0
Q ss_pred cCChHHHHHHHHhcCCC---CCcchHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHH
Q 007400 365 CGCLNDGRQVFDLTDNK---ENSMLWNTMISA-LTQHGYDEQAIRLFHDMVRSSVKPDK----ITLAVILNACTHSGLVQ 436 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~ 436 (605)
.|+.+++.+.+..+... +....+-.|+.+ .....+...|+++|+...- ..|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 46666666666655532 233345555544 3345566677777766544 33432 23333444555667766
Q ss_pred HHHHHHHHchHhhCCCCCHHHHHH-HHHHHHh---cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007400 437 EGLTYFESMTHDLGIIPNQEHHAC-LIELLAQ---AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQ 512 (605)
Q Consensus 437 ~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 512 (605)
++..+-.+....+...|=..-|.. +...+.+ ....+....++..|.-.--..+|..+...-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 666555555544444443332222 2222222 223444555555555222345666667777777777777777777
Q ss_pred HHhcC
Q 007400 513 LIDQN 517 (605)
Q Consensus 513 ~~~~~ 517 (605)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 77764
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.64 E-value=11 Score=28.04 Aligned_cols=60 Identities=28% Similarity=0.349 Sum_probs=41.8
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH
Q 007400 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321 (605)
Q Consensus 259 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 321 (605)
..+.+.|++++|..+.+.+..||...|-+|.. .+.|..+++...+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 44666777777778888887788888776654 46677777777777777766 45544443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.57 E-value=3 Score=36.08 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKM-PY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 521 (605)
...+..+.+.+.+++|+...+.- .. +.|......+...++..|++++|..-++-+-++.|+..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34455677788888888877653 32 34566777788888999999999999998888888544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.34 E-value=1.3 Score=26.68 Aligned_cols=29 Identities=17% Similarity=0.095 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999988653
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=13 Score=36.32 Aligned_cols=122 Identities=13% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 474 (605)
...|+.-.|-+-+...++. .+-++.........+...|+++.+.+.+..... -+.....+..++++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3445555554433333332 111222222223334555666666665555441 2223344555555555566666666
Q ss_pred HHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 475 MNQLEKMP-Y-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 475 ~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
...-+.|. . -.++.+....+......|-++++...+++.+.++|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 65555442 0 112333333333334445555666666665555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.69 E-value=7.3 Score=28.80 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHH
Q 007400 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 462 (605)
-++.+-+..+....+.|++......+++|.+.+++..|.++++-+..+.+. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 355666777777778899999999999999999999999999887644332 344555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.41 E-value=55 Score=34.81 Aligned_cols=460 Identities=8% Similarity=-0.034 Sum_probs=237.1
Q ss_pred hhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCc-hHHHHHHHHH
Q 007400 52 AETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV-KNL-FSYNNMLSGY 129 (605)
Q Consensus 52 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~~li~~~ 129 (605)
...|.....++ +.|++..+.++...+. ..+..+-. .|..+...+. ...+++....+++... |-. ..-...+..+
T Consensus 34 r~~f~~A~~a~-~~g~~~~~~~~~~~l~-d~pL~~yl-~y~~L~~~l~-~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAW-DNRQMDVVEQLMPTLK-DYPLYPYL-EYRQLTQDLM-NQPAVQVTNFIRANPTLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHhcc-CCCcHhHH-HHHHHHhccc-cCCHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 44555555554 6677888777766542 11111111 3333322211 2356677777776664 322 2233345556
Q ss_pred HccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 007400 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209 (605)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (605)
.+.+++......+.. ...+...-.....+....|+.++|.+..+.+-..|- ..+..++ .+|+
T Consensus 110 a~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd----------------~l~~ 171 (644)
T PRK11619 110 ARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACD----------------KLFS 171 (644)
T ss_pred HHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHH----------------HHHH
Confidence 677888877773322 223444445566777778887777666666544332 1233334 4444
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHH
Q 007400 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 289 (605)
...+.|.-.+...+.- +......|+...|..+...+..........++..+.. ...+...+.... ++...-..++
T Consensus 172 ~~~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~ 246 (644)
T PRK11619 172 VWQQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAA 246 (644)
T ss_pred HHHHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHH
Confidence 4444444333344443 4455567888888877777732222223333333332 333333333321 2221111112
Q ss_pred HH--HHhCCChHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 290 AG--YTRNGLGQKALELFTRMMILR-IRPNQH--TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 290 ~~--~~~~g~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
.+ -....+.+.|..++....... ..+... ....+.......+..+.+...+....... .+......-+.....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~ 324 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHH
Confidence 12 223456788999998875433 222222 22223222223222445555555433222 344555666666678
Q ss_pred cCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH---HH--
Q 007400 365 CGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLV---QE-- 437 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~---~~-- 437 (605)
.++++.+...+..|... ....-..=+.+++...|+.++|...|+++.. ..+ .|..+... +.|.. ..
T Consensus 325 ~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~~~~~ 397 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RLGEEYPLKIDK 397 (644)
T ss_pred ccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--HcCCCCCCCCCC
Confidence 89999998888888642 1233444567777778999999999998743 222 22222221 11211 00
Q ss_pred HHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 438 GLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 438 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.-..-..+ ...| -..-+..+...|+...|...+..+....+......++......|.++.++....+....+
T Consensus 398 ~~~~~~~~----~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~ 469 (644)
T PRK11619 398 APKPDSAL----TQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWD 469 (644)
T ss_pred CCchhhhh----ccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHH
Confidence 00000000 0011 112344566788888888888766434566666667777778888888887766543210
Q ss_pred ---CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCC
Q 007400 518 ---PQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKE 555 (605)
Q Consensus 518 ---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 555 (605)
-.-+..|......+.+.-..+.+.-.--.-.|.++.+.
T Consensus 470 ~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 470 HLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 01123455566666655566666543333346666554
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.39 E-value=33 Score=32.24 Aligned_cols=114 Identities=12% Similarity=0.005 Sum_probs=61.8
Q ss_pred cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhc----C---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 007400 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA----G---CSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGN 502 (605)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 502 (605)
+..+|..+|+++. +.|..+.......+...|..- + +...|...+.++...-+......++..|.. ..+
T Consensus 128 d~~~A~~~~~~Aa-~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAA-KLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 5566666666665 334433222233333333332 1 223566666665323345555555544432 347
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---------------CchHHHHHHHHHHhCC
Q 007400 503 IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG---------------KGRLVEKVRQLINERQ 551 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~ 551 (605)
.++|...|+++-+... ......++ ++...| +...|...+......+
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 8888888888888765 45555566 555555 6666677666665544
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=85.36 E-value=2.7 Score=31.01 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=19.3
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 510 VDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 510 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+++.++.+|+|......++..+...|++++|.+.+-.+.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555444433
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=85.32 E-value=1.8 Score=24.15 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
|+.+.+..+|++++...|.+...|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678899999999999998888888776543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.05 E-value=25 Score=35.68 Aligned_cols=152 Identities=17% Similarity=0.108 Sum_probs=85.0
Q ss_pred HHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHH
Q 007400 261 YAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVH 340 (605)
Q Consensus 261 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 340 (605)
..-.|+++.|..++..+.++ ..+.++..+.++|-.++|+++- +|...- .....+.|+++.|.++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la 660 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLA 660 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHH
Confidence 34456777777766666532 3345556666777777766532 222111 12334556666666654
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007400 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420 (605)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 420 (605)
.+. .+..-|..|.++..+.|++..|.+.|.... -|..|+-.+...|+.+....+-....+.|..
T Consensus 661 ~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~---- 724 (794)
T KOG0276|consen 661 VEA------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN---- 724 (794)
T ss_pred Hhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhccc----
Confidence 432 234556777777777777777777776433 3455666666666666555555555554421
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHc
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESM 445 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~ 445 (605)
|....++...|+++++.+++..-
T Consensus 725 --N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 --NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --chHHHHHHHcCCHHHHHHHHHhc
Confidence 22223445567777776666544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.69 E-value=9.3 Score=31.04 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=66.3
Q ss_pred HHHHHHHHHH---HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHH
Q 007400 419 KITLAVILNA---CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMPYEH-DSYLWNAL 493 (605)
Q Consensus 419 ~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l 493 (605)
....+.|+.. -...++.+++..+++.+. -+.|+ ...-..-...+...|++++|..+|.+..... ....-..|
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 3444444443 345889999999999988 56666 3333344566889999999999999986333 32222333
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 494 HGVCRI-HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 494 ~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
...|.. .|| | .|...+......|.-.+++.+.+.+.
T Consensus 84 ~A~CL~al~D---------------p----~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 84 LALCLNAKGD---------------A----EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHhcCC---------------h----HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 333322 222 2 35555555556666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.46 E-value=10 Score=32.71 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=53.3
Q ss_pred HhcCChHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CC---CCCchHHHHHHHHHhcCCch
Q 007400 466 AQAGCSDQLMNQLEKMPYE---HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-NP---QSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p---~~~~~~~~l~~~~~~~g~~~ 538 (605)
.+.|+ +.|.+.|-.+... .++.....|+..|. ..+.+++..++-+++++ .| -|+..+..|+.++.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34454 6677766665422 34555556665554 67899999999999998 22 26889999999999999998
Q ss_pred HHH
Q 007400 539 LVE 541 (605)
Q Consensus 539 ~a~ 541 (605)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 873
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.17 E-value=25 Score=35.75 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=41.7
Q ss_pred hcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
-.|+++.|..++..++++ ..+.++.-+.++|-.++|+++--. ... -.....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~D-----~d~---rFelal~lgrl~iA~~la~e~--- 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELSTD-----PDQ---RFELALKLGRLDIAFDLAVEA--- 663 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCCC-----hhh---hhhhhhhcCcHHHHHHHHHhh---
Confidence 345666665555555522 223344444555555555443221 110 112233444555554444332
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHH
Q 007400 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQ 210 (605)
Q Consensus 180 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 210 (605)
-+..-|..|.++..+.+++..|.+.+..
T Consensus 664 ---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 664 ---NSEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred ---cchHHHHHHHHHHhhcccchhHHHHHHh
Confidence 1233455555555555555555555443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.00 E-value=7.5 Score=35.38 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
+......|...|.+.+|.++-++++.++|-+...+..|...+...|+--.|...++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456678899999999999999999999999999999999999999888888777763
|
|
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.20 E-value=45 Score=32.05 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC------CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----Cch
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKMPYEH------DSYLW--NALHGVCRIHGNIDMGRKVVDQLIDQ---NPQS----SAT 523 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~----~~~ 523 (605)
..|.+.+..+|++++|.+++.+.+++. ...+- .--+..|...+|+-+|.-+-+++... .|+- ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 456667778888888888888775321 11111 11245778889999999988888765 3321 135
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeC
Q 007400 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVS 573 (605)
Q Consensus 524 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 573 (605)
|..+.....+.+.|=.+-+.|+..-.-|-.+....-|.++....-.|+..
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee
Confidence 66778888888888899999998887776666556677776666555553
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=83.02 E-value=86 Score=35.17 Aligned_cols=245 Identities=9% Similarity=-0.013 Sum_probs=128.5
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhhcCCCCcchHHHHHHHH
Q 007400 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL-SDARRLFDETDARDVLTWTTMVSGY 261 (605)
Q Consensus 183 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~li~~~ 261 (605)
+|+..-...+..+.+.+..+ +...+..+++ .++..+-...+.++.+.+.. .....+...+..+|+.+-...+.++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL 708 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVL 708 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHH
Confidence 55555556666665555433 3333333332 22333333444444333221 1112222333334555555555555
Q ss_pred HhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHH-HHHHH
Q 007400 262 AKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH-GKQVH 340 (605)
Q Consensus 262 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~ 340 (605)
...+..+ ...+...+..+|...-...+.++.+.+..+. +..... .++...-.....++...+..+. +...+
T Consensus 709 ~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 5443211 2234455566777666666777666654432 122222 4555555566666666654432 23334
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007400 341 GFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKI 420 (605)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 420 (605)
..+.+ .++..+-...+..+.+.|..+.+...+......++...-...+.++...+. +++...+..+++ .|+..
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~ 853 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLD 853 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHH
Confidence 44433 345677777888888888766554334333333366566666777777665 446666666664 56777
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.-...+.++.+......+...+..+.
T Consensus 854 VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 854 VRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 77777777777533445666666665
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.61 E-value=3.6 Score=36.20 Aligned_cols=86 Identities=8% Similarity=-0.007 Sum_probs=54.7
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSY-LWNALHGVCRIHGNID 504 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~ 504 (605)
.|.....++.|+..|.+.+ -+.|+. .-|+.=+.++.+..+++.+.+--.+. .+.|+.. ....++........++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 3566667788888777776 566775 44555566666777777666554443 3344433 3444555666777788
Q ss_pred HHHHHHHHHHhc
Q 007400 505 MGRKVVDQLIDQ 516 (605)
Q Consensus 505 ~A~~~~~~~~~~ 516 (605)
.|+..++++.++
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 888888887655
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.56 E-value=9.6 Score=30.30 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHH---HHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 452 IPNQEHHACLIELLAQAGCSDQ---LMNQLEKMP--YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
.++..+-..+.+++.+..+.++ -+.++++.- -.| .......|+-++.+.++++.++.+.+..++.+|+|..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 5555666667777777665443 444555442 112 233445567788899999999999999999999776543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=82.15 E-value=33 Score=33.33 Aligned_cols=120 Identities=10% Similarity=0.045 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH-
Q 007400 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLG--IIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNA- 492 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~- 492 (605)
-..++..+...+...|+.+.|.++++++.-..+ +.|. |..+.. -...|. .++. ..-|...|.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~---F~~~~~-~~~~g~--------~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPS---FSPFRS-NLTSGN--------CRLDYRRPENRQFFLAL 106 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH---hhhhhc-ccccCc--------cccCCccccchHHHHHH
Confidence 345777777778888888888888877651110 0010 000000 000000 0111 1224444444
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 007400 493 --LHGVCRIHGNIDMGRKVVDQLIDQNPQ-SSATHGLLSSIYS-ALGKGRLVEKVRQLINE 549 (605)
Q Consensus 493 --l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 549 (605)
.+..+.++|-+..|+++.+-++.++|. |+-.....++.|. +++.++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 466778899999999999999999998 7777777777766 67888888888776654
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.14 E-value=69 Score=33.46 Aligned_cols=242 Identities=8% Similarity=0.001 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHH-HHHHH-HhcccchHHHHHHHHHHHH-------cCCCCChhHHHHHHHHHHhcC--
Q 007400 298 GQKALELFTRMMILRIRPNQHTFS-SCLCA-CASIVSLKHGKQVHGFLIR-------TNFRSNTIVMSSLIDMYSKCG-- 366 (605)
Q Consensus 298 ~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-- 366 (605)
...|..+++...+.|..-...... ....+ .....+.+.|..+++.+.+ .+ .+.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 567888888888766322111111 11222 4466799999999999877 45 3445566777777643
Q ss_pred ---ChHHHHHHHHhcCCCCCcchHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCcHH
Q 007400 367 ---CLNDGRQVFDLTDNKENSMLWNTMISALTQH---GYDEQAIRLFHDMVRSSVKPDKITLAVILNACT----HSGLVQ 436 (605)
Q Consensus 367 ---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~ 436 (605)
+.+.|..+|.......++..-..+...+... .+...|.++|......|.. ..+..+..+|. -..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHH
Confidence 6677999998776554555555555554433 4678999999999988733 33333333322 345788
Q ss_pred HHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHH---H-HHHh----cCCHHH
Q 007400 437 EGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM---PYEHDSYLWNALH---G-VCRI----HGNIDM 505 (605)
Q Consensus 437 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~---~-~~~~----~g~~~~ 505 (605)
.|..++.+.- +.+ .|....-...+..+.. +.++.+.-.+..+ .. ....+-...+ . .... ..+.+.
T Consensus 382 ~A~~~~k~aA-~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~-~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 382 LAFAYYKKAA-EKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY-EVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHH-Hcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh-hHHhhHHHHHHHhccccccccccccchhH
Confidence 9999999988 435 3332222222233333 5555555444332 20 1111110000 0 0111 125566
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhc----CCchHHHHHHHHHHhCC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSAL----GKGRLVEKVRQLINERQ 551 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~ 551 (605)
+...+.++.... +......|+++|... .+++.|...+....+.+
T Consensus 458 ~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 458 AFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 666666655443 566777777777765 34777888888777665
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.59 E-value=59 Score=32.32 Aligned_cols=120 Identities=11% Similarity=0.035 Sum_probs=72.6
Q ss_pred HHHHcCCHHHHHHHHHHHH---HCC--CCCCH---HHHHHHHHHHhccCcHHHHHHHHHHchH------hhCCCCCHHHH
Q 007400 393 ALTQHGYDEQAIRLFHDMV---RSS--VKPDK---ITLAVILNACTHSGLVQEGLTYFESMTH------DLGIIPNQEHH 458 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~---~~~--~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~p~~~~~ 458 (605)
.+...|++.+|.+++...- ..| +.|.. ..++.+.-.+.+.|.+..+..+|.++.+ ..|+.|...
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~-- 326 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT-- 326 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc--
Confidence 4556788888888775432 112 12211 2235555555666777777777776652 012222110
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
..+.......+....+-.|...|+.-.|.+.|.++....-.+|..|..|+.+|...
T Consensus 327 --------------------~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 --------------------FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred --------------------eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 00111223334445566778889999999999999998777889999999998764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.23 E-value=11 Score=28.21 Aligned_cols=59 Identities=12% Similarity=0.084 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 007400 168 EGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIV 227 (605)
Q Consensus 168 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (605)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++...- .....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 4555666666777888888888888888888888888888887765432 2222555444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.88 E-value=3.4 Score=21.90 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=7.7
Q ss_pred HHHHHHhcCChHHHHHHH
Q 007400 461 LIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~ 478 (605)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444444444444443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.74 E-value=9.8 Score=35.38 Aligned_cols=93 Identities=6% Similarity=-0.125 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP----YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
...|..=+.-|.+..++..|...|.+-- -.| +...|+.-+.+..-.|++..|+.-..+++..+|.+..+|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 3455555667888889999999987641 123 3556766676777789999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHH
Q 007400 529 SIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~ 547 (605)
.++....++++|....++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999988887776654
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.74 E-value=57 Score=31.57 Aligned_cols=125 Identities=11% Similarity=0.070 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHH
Q 007400 396 QHGYDEQAIRLFHDMVRSSVKPDKIT--------LAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIE 463 (605)
Q Consensus 396 ~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 463 (605)
..+++.+|.++-+.....-..-|..+ |..+-.++...|+...-..++....+...+..| ....+.|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 34677777776665543322223333 333344556677766666666655433333333 445677888
Q ss_pred HHHhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 464 LLAQAGCSDQLMNQLEKMPYEHD------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
.|...+.++.|..+..+...+.. ...+..++..-+.++++..|.+.+-+++...|.+
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 88889999999999988753211 1112234555667889999999999998888853
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.73 E-value=34 Score=29.03 Aligned_cols=69 Identities=17% Similarity=0.055 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc---cCcHHHHHHHHHHchHhh----CCCCC-HHHHHHHHHHHHhcC
Q 007400 400 DEQAIRLFHDMVRSSVKPDKITLAVILNACTH---SGLVQEGLTYFESMTHDL----GIIPN-QEHHACLIELLAQAG 469 (605)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g 469 (605)
++.|.+.++.-...+ +.|...++.-..++.. .....++..++++...+. .+.|+ ..++.++..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 455666666544432 2244444444444333 334455666666655332 45666 456666666665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.52 E-value=21 Score=26.50 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 007400 32 QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLIS 96 (605)
Q Consensus 32 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (605)
+.-++..-+..+...++-|++....+.+++|.+-.|+..|.++++.++..-.. ... .|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~-~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKE-IYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chh-hHHHHHH
Confidence 55566777777788888899999999999999999999999999988754432 222 5665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.24 E-value=6.5 Score=35.95 Aligned_cols=53 Identities=6% Similarity=0.023 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
-..+.|+.++|..+|+.++.+.|+++..+..++......++.-+|-+.|-+..
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 34567888888888888888888888888888888877777777777765543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 4e-12
Identities = 89/595 (14%), Positives = 177/595 (29%), Gaps = 172/595 (28%)
Query: 76 LHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMM 135
+ + Q T +Y +D VF K V L Y + L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLY----NDNQ---VFAKYNVSRLQPYLKLRQALLEL--- 147
Query: 136 KHARNLF-DNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGI--L 192
+ A+N+ D + G K+ + YKV + +F I L
Sbjct: 148 RPAKNVLIDGVL------------GSGKTWVALDVCLSYKVQCKM-----DF---KIFWL 187
Query: 193 TI--CVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAY-AKCGELSDA-RRLFDETDA 248
+ C E + L Q L+ N S + + RRL
Sbjct: 188 NLKNCNSPETV-LEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 249 RDVLTWTTMVSGYAKLGDMESAS--KLFNEMPEKNPVSWTTLIAGYTRN----------- 295
+ L +V L ++++A FN +S L+ TR
Sbjct: 244 ENCL----LV-----LLNVQNAKAWNAFN-------LSCKILLT--TRFKQVTDFLSAAT 285
Query: 296 -----------GLGQ-KALELFTRMMILRIR----PNQHTFSSCLCACASIVSLKHGKQV 339
L + L + L R P + ++ + I + +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPR-RLSII-----AESI 337
Query: 340 HGFLIRTNF--RSNTIVMSSLIDMYSKCGCLN-----DGRQVF-DLTDNKEN-------- 383
L + N ++++I+ LN + R++F L+ +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIES-----SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 384 SMLWNTMISALTQHGYDEQAI-RLFHD--MVRSSVKPDKITLAVILNACTHSGLVQEGLT 440
S++W +I D + H +V K I++ S
Sbjct: 393 SLIWFDVIK------SDVMVVVNKLHKYSLVEKQPKESTISI--------PSI------- 431
Query: 441 YFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNAL--H-GVC 497
Y E H +++ D + L PY D Y ++ + H
Sbjct: 432 YLELKVKLEN---EYALHRSIVDHYNIPKTFDS--DDLIP-PYL-DQYFYSHIGHHLKNI 484
Query: 498 RIHGNIDMGRKV-VD------QLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550
+ + R V +D ++ + +A+ +L+++ ++ + I +
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-------LKFYKPYICDN 537
Query: 551 QFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPSLDADR 605
K E+ ++ I + + + D+L ++A ++A +A +
Sbjct: 538 DPKYERLVN--AILDFLPKIEENLICSKYTDLL-----RIALMAEDEAIFEEAHK 585
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 2e-09
Identities = 16/179 (8%), Positives = 44/179 (24%), Gaps = 6/179 (3%)
Query: 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373
P + + L +SL + G + + + L
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 374 VFDL------TDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILN 427
+ + ++N ++ + G ++ + + + + + PD ++ A L
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 428 ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHD 486
+ G+ A L+ +A +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 1e-08
Identities = 19/163 (11%), Positives = 45/163 (27%), Gaps = 12/163 (7%)
Query: 177 RRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236
R+ S E A +L L + + GQ + +L
Sbjct: 84 RQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQL 143
Query: 237 SDARRLFD-------ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSW 285
A L + + + ++ G+A+ G + + + + + +S+
Sbjct: 144 PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203
Query: 286 TTLIAGYTRNGLGQKALE-LFTRMMILRIRPNQHTFSSCLCAC 327
+ R +E +M ++ + L
Sbjct: 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.7 bits (122), Expect = 6e-07
Identities = 11/136 (8%), Positives = 38/136 (27%), Gaps = 8/136 (5%)
Query: 249 RDVLTWTTMVSGYAKLGDMESASKLFNEMPEK-------NPVSWTTLIAGYTRNGLGQKA 301
+ A L + + ++ G+ R G ++
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184
Query: 302 LELFTRMMILRIRPNQHTFSSCL-CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360
+ + + + P+ ++++ L C ++ + + + + + L+
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244
Query: 361 MYSKCGCLNDGRQVFD 376
+ L +V
Sbjct: 245 EEDRATVLKAVHKVKP 260
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.4 bits (116), Expect = 3e-06
Identities = 37/259 (14%), Positives = 77/259 (29%), Gaps = 22/259 (8%)
Query: 53 ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFD 112
E LA +LQ+ SL + + + + A +
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSG-QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 113 -------KIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAER----DVVSWNTMIIGYA 161
K + L YN ++ G+A G K + + + D++S+ +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 162 KSGAVEEGLKFY-KVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220
+ ++ + + + + A +L+ + LK +V + L
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 221 VISSSIV-DAYAKCGELSDARRLFDETDARDV--------LTWTTMVSGYAKLGDMESAS 271
V +S ++ D YAK G +S + + + L V K
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331
Query: 272 KLFNEMPEKNPVSWTTLIA 290
K + + W +
Sbjct: 332 KHARKTLKTLRDQWEKALC 350
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 7e-06
Identities = 19/202 (9%), Positives = 64/202 (31%), Gaps = 16/202 (7%)
Query: 121 SYNNMLSGYANLGMMKHARNLFDNMAER-------DVVSWNTMIIGYAKSGAVEEGLKFY 173
+ A +L + + +N +++G+A+ GA +E +
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 174 KVLRRFSISCNEFSFAGILTICVKLE-ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232
+++ ++ + S+A L + + + + Q+ G + ++ ++ +
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 233 CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGY 292
L ++ L + + ++ + + +
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLP--------PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
Query: 293 TRNGLGQKALELFTRMMILRIR 314
Q +EL +R+ ++ +
Sbjct: 301 QCLFEKQLHMELASRVCVVSVE 322
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.43 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.2 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.19 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.18 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.13 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.12 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.12 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.09 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.05 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.04 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.04 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.03 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.98 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.85 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.84 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.83 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.81 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.79 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.77 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.76 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.74 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.74 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.69 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.69 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.67 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.67 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.64 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.61 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.6 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.59 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.59 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.59 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.58 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.51 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.49 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.48 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.47 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.46 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.45 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.43 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.42 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.38 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.37 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.36 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.36 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.36 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.36 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.35 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.32 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.32 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.29 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.25 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.23 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.21 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.12 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.1 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.07 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.06 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.98 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.93 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.89 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.86 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.82 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.82 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.8 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.75 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.74 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.65 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.62 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.51 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.46 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.42 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.28 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.23 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.2 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.17 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.99 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.99 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.84 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.72 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.69 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.59 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.41 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.21 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.04 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.03 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.69 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.49 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.11 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.79 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.4 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.89 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.79 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.54 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.51 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.36 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 93.21 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.83 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.47 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.4 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.64 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 91.18 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.97 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.3 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 90.2 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.3 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.83 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 88.79 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.61 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.45 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 88.39 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.27 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 87.45 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.83 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.74 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.6 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.0 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.88 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.91 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=343.82 Aligned_cols=474 Identities=9% Similarity=-0.011 Sum_probs=310.6
Q ss_pred CChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC--CCCchHHHHHHH
Q 007400 50 LPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLS 127 (605)
Q Consensus 50 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~ 127 (605)
++...|+.++..|.+.|++++|..+++.+....+ +.. ++..++.+|.+.|++++|..+|+++. .+++.+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p--~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG--NPN-DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--CHH-HHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC--Cch-HHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4677888888999899999999999988886553 334 67788888999999999999998884 467888889999
Q ss_pred HHHccCChHHHHHHHhhcCCC-------------------CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhh
Q 007400 128 GYANLGMMKHARNLFDNMAER-------------------DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCN-EFS 187 (605)
Q Consensus 128 ~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ 187 (605)
+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|++|.+.+ |+ ...
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 236 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEA 236 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHH
Confidence 999999999999999854432 36678888888888888888888888887643 33 334
Q ss_pred HHHHHHHHhccCChHHHH--HH-HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC--CCcchHHHHHHHHH
Q 007400 188 FAGILTICVKLEELKLTR--QV-HGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA--RDVLTWTTMVSGYA 262 (605)
Q Consensus 188 ~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~ 262 (605)
+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.. ++..+|..++..|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 444444333332222111 11 33333333444445566666677777777777777777665 46666666666677
Q ss_pred hcCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHH
Q 007400 263 KLGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339 (605)
Q Consensus 263 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 339 (605)
+.|++++|..+|+++.+ .+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 77777777666666542 245566666666666677777766666666432 34555666666666666666666666
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007400 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP 417 (605)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 417 (605)
|+++.+.. +.+..+++.++.+|.+.|++++|.++|+.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 66666543 34455666666666666666666666665431 2255666666666666666666666666666532 22
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchHhh---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 007400 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDL---GIIPN--QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLW 490 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 490 (605)
+..+|..++.+|.+.|++++|..+|+++.... +..|+ ..++..++.+|.+.|++++|.+.++++. .+.+..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 45566666666666666666666666665221 44555 5566666666666666666666666541 23456666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
..++.+|...|++++|.+.|+++++.+|+++..+..++.+|
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 66666666666666666666666666666666666666555
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=337.60 Aligned_cols=457 Identities=10% Similarity=0.003 Sum_probs=391.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCC--CCCchHHHHHHHHHHccCChHHHHHHHhhcC--CCCceeHHHHHHHHHhc
Q 007400 88 TFLSNHLISMYFKCGSDVDARKVFDKIP--VKNLFSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKS 163 (605)
Q Consensus 88 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~ 163 (605)
...++.++..|.+.|++++|..+|+++. .|+..++..++.+|.+.|++++|..+|+.+. .++..+++.++.+|.+.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 3388999999999999999999999986 4777889999999999999999999999984 57889999999999999
Q ss_pred CChHHHHHHHHHHHh-C--------------CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007400 164 GAVEEGLKFYKVLRR-F--------------SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228 (605)
Q Consensus 164 ~~~~~a~~~~~~m~~-~--------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (605)
|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|...|+++.+.++. +...+..+..
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 999999999995322 1 23345789999999999999999999999999987643 5556666665
Q ss_pred HHHhcCChHHHHHH---HhhcCCC----CcchHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChH
Q 007400 229 AYAKCGELSDARRL---FDETDAR----DVLTWTTMVSGYAKLGDMESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQ 299 (605)
Q Consensus 229 ~~~~~g~~~~a~~~---~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 299 (605)
.+...+..+.+... +..+... ....|+.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 55443332222111 2222222 223456667788999999999999999988 78999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 300 KALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 300 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
+|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+.+.
T Consensus 323 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 323 DVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999865 4477889999999999999999999999999765 6778899999999999999999999999865
Q ss_pred C--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHH
Q 007400 380 N--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEH 457 (605)
Q Consensus 380 ~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 457 (605)
. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++... .+.+..+
T Consensus 401 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 477 (597)
T 2xpi_A 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLL 477 (597)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 2 3367899999999999999999999999999853 347789999999999999999999999999832 2335889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKM-------PYEHD--SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++..|+++.+|..++
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999999999987 33566 789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007400 529 SIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+|.+.|++++|.++++++.+.
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999874
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-27 Score=233.97 Aligned_cols=371 Identities=11% Similarity=0.079 Sum_probs=281.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRRFSISCN-EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGE 235 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 235 (605)
...+.+.|++++|.+.++.+.+. .|+ ...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34455566666666666666552 233 3344444455566666666666666666553 2355666666666666666
Q ss_pred hHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007400 236 LSDARRLFDETDA--R-DVLTWTTMVSGYAKLGDMESASKLFNEMPE--K-NPVSWTTLIAGYTRNGLGQKALELFTRMM 309 (605)
Q Consensus 236 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 309 (605)
+++|...|+++.. | +..+|..+...+...|++++|...|+++.+ | +...+..+...+...|++++|++.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6666666665542 2 334566666666666666666677766543 3 44567778888888899999999998888
Q ss_pred HCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchH
Q 007400 310 ILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLW 387 (605)
Q Consensus 310 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 387 (605)
... +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|+... .+.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 752 3456778888888889999999999999988876 5567788888899999999999999988654 22257788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHH
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 466 (605)
..++..+...|++++|+..|+++.+. .| +..++..+..++...|++++|...|+++.+. .+.+..++..++..+.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 89999999999999999999999984 55 4668999999999999999999999999832 2345788999999999
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 467 QAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
+.|++++|.+.++++. .+.+..++..++.++...|++++|...|+++++..|+++..+..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998863 345678899999999999999999999999999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-27 Score=232.19 Aligned_cols=350 Identities=12% Similarity=0.096 Sum_probs=307.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChH
Q 007400 192 LTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDME 268 (605)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 268 (605)
...+.+.|++++|.+.+..+.+..+ .+...+..+...+...|++++|...++..... +..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 4566788999999999999988754 35677788888999999999999999876643 6678999999999999999
Q ss_pred HHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 007400 269 SASKLFNEMPE--K-NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIR 345 (605)
Q Consensus 269 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 345 (605)
+|...|+++.+ | +..+|..++.++.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...+.++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999998764 3 56689999999999999999999999998853 23345667778888899999999999999998
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 007400 346 TNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITL 422 (605)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~ 422 (605)
.. +.+..++..+...+...|++++|...|+++.. +.+...|..+...+...|++++|+..+++... +.| +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHH
Confidence 75 56678899999999999999999999997652 33567899999999999999999999999998 456 46789
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRI 499 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 499 (605)
..+..++...|++++|...|+++. ...|+ ..++..++.++.+.|++++|.+.++++. .+.+..++..++..+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999998 34555 7789999999999999999999999872 45688999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.|++++|...++++++..|++..++..++.+|.+.|++++|...++++.+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999876
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-27 Score=235.07 Aligned_cols=211 Identities=8% Similarity=0.062 Sum_probs=153.1
Q ss_pred HHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhc
Q 007400 168 EGLKFYKVLRRFSISCNEF-SFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDET 246 (605)
Q Consensus 168 ~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 246 (605)
.+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~------ 81 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS------ 81 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh------
Confidence 4455667777777766554 588899999999999999999999999999999999999999988876543221
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 007400 247 DARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCA 326 (605)
Q Consensus 247 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 326 (605)
+.+..++|.++|++|...|+.||..||+.+|.+
T Consensus 82 -----------------------------------------------~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 82 -----------------------------------------------PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred -----------------------------------------------hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 234467888999999999999999999999999
Q ss_pred HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCCcchHHHHHHHHHHcCCHHHH
Q 007400 327 CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN---KENSMLWNTMISALTQHGYDEQA 403 (605)
Q Consensus 327 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 403 (605)
|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.. .||..+|++||.+|++.|+.++|
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 999999999999999999999888777777777777776666666666665542 35666666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007400 404 IRLFHDMVRSSVKPDKITLAVILNACTH 431 (605)
Q Consensus 404 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 431 (605)
.+++++|.+.|..|+..||+.++..|..
T Consensus 195 ~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 195 YKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=228.13 Aligned_cols=188 Identities=15% Similarity=0.155 Sum_probs=169.5
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCChh
Q 007400 151 VSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEE---------LKLTRQVHGQVLVTGFLSNVV 221 (605)
Q Consensus 151 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 221 (605)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 007400 222 ISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKA 301 (605)
Q Consensus 222 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 301 (605)
+|++||.+|++.|++++|.++|++|.. .-..||..+|+++|.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~---------------------------~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKA---------------------------FGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------------TTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------cCCCCccceehHHHHHHHHCCCHHHH
Confidence 999999999999999999977776532 22357889999999999999999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007400 302 LELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC 365 (605)
Q Consensus 302 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (605)
.++|++|.+.|+.||..||+.+|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999888763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-24 Score=218.70 Aligned_cols=423 Identities=10% Similarity=-0.024 Sum_probs=297.8
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhhcC--CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 007400 120 FSYNNMLSGYANLGMMKHARNLFDNMA--ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK 197 (605)
Q Consensus 120 ~~~~~li~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 197 (605)
..+......+.+.|++++|...|+++. .|+...|..+..++.+.|++++|.+.++.+.+.+ +.+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 345556666777777777777777665 3666667777777777777777777777776633 2244566667777777
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC----CcchHHH---HHHHHHhcCChHHH
Q 007400 198 LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR----DVLTWTT---MVSGYAKLGDMESA 270 (605)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~---li~~~~~~~~~~~A 270 (605)
.|++++|...|+.+.+.+. ++......++..+........+.+.+..+... +...+.. .............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 7777777777777766653 23333333444433333333332222111100 0000000 00000011111111
Q ss_pred HHHHhhCCC---------C-ChhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCCCC--------ChHHHHHHH
Q 007400 271 SKLFNEMPE---------K-NPVSWTTLIAGYTR---NGLGQKALELFTRMMI-----LRIRP--------NQHTFSSCL 324 (605)
Q Consensus 271 ~~~~~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~g~~p--------~~~~~~~ll 324 (605)
...+..... + +...+......+.. .|++++|+..|+++.+ ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 122222211 1 24455555555554 8999999999999987 32122 345677788
Q ss_pred HHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHH
Q 007400 325 CACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQ 402 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 402 (605)
..+...|+++.|...++.+.+.... ...+..+..+|...|++++|...++.+.. +.+..++..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8899999999999999999987633 88889999999999999999999997543 2367789999999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 403 AIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 403 a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
|...++++.+. .| +..++..+..++...|++++|...++++... .+.+...+..++..+.+.|++++|...++++
T Consensus 323 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 323 AGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999985 44 5678999999999999999999999999833 2224678899999999999999999999876
Q ss_pred C----CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 482 P----YEHD----SYLWNALHGVCRI---HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 482 ~----~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
. ..++ ..++..++..+.. .|++++|...++++++..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 1222 4488889999999 999999999999999999999999999999999999999999999998874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-24 Score=216.89 Aligned_cols=270 Identities=11% Similarity=-0.003 Sum_probs=223.9
Q ss_pred hHHHHHHHHHh---cCChHHHHHHHhhCCC----------------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007400 253 TWTTMVSGYAK---LGDMESASKLFNEMPE----------------K-NPVSWTTLIAGYTRNGLGQKALELFTRMMILR 312 (605)
Q Consensus 253 ~~~~li~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 312 (605)
.+......+.. .|++++|...|+++.+ + +..++..++..+...|++++|+..|+++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 34444444443 7778888887776544 1 34578888999999999999999999998864
Q ss_pred CCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHH
Q 007400 313 IRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTM 390 (605)
Q Consensus 313 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 390 (605)
|+...+..+..++...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...|+... .+.+..++..+
T Consensus 268 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (514)
T 2gw1_A 268 --PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344 (514)
T ss_dssp --CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH
T ss_pred --ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH
Confidence 447788889999999999999999999998876 5567889999999999999999999999754 22367789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELL 465 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 465 (605)
...+...|++++|...++++.+. .| +..++..+..++...|++++|...++++.....-.++ ...+..++.++
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999984 44 5678999999999999999999999998843322232 34889999999
Q ss_pred Hh---cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 466 AQ---AGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 466 ~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
.. .|++++|...++++. .+.+..++..++.++...|++++|...|+++++..|+++..+..+
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99 999999999998862 345788899999999999999999999999999999887777655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-23 Score=206.19 Aligned_cols=322 Identities=9% Similarity=0.039 Sum_probs=238.4
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhc
Q 007400 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKL 264 (605)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 264 (605)
...+..+...+.+.|++++|..+|+.+.+..+ .+..++..+..+|...|++++|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~------------------------ 80 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAAL------------------------ 80 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHH------------------------
Confidence 33445555555555555555555555554422 23444555555555555555555
Q ss_pred CChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCh----HHHHHH------------HH
Q 007400 265 GDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQ----HTFSSC------------LC 325 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l------------l~ 325 (605)
..|+++.+ .+..++..++..|.+.|++++|+..|+++.+. .|+. ..+..+ ..
T Consensus 81 -------~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 151 (450)
T 2y4t_A 81 -------PDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQAL 151 (450)
T ss_dssp -------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444432 24566777777777777777777777777764 3433 333333 44
Q ss_pred HHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHH
Q 007400 326 ACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQA 403 (605)
Q Consensus 326 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a 403 (605)
.+...|++++|...++.+.+.. +.+..++..++.+|.+.|++++|.+.|+.+.. +.+..+|..++..|...|++++|
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4778899999999999988875 56778888999999999999999999987652 23678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHH------------HHHHhccCcHHHHHHHHHHchHhhCCCCC-----HHHHHHHHHHH
Q 007400 404 IRLFHDMVRSSVKPDK-ITLAVI------------LNACTHSGLVQEGLTYFESMTHDLGIIPN-----QEHHACLIELL 465 (605)
Q Consensus 404 ~~~~~~m~~~~~~p~~-~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~ 465 (605)
+..|+++.. ..|+. ..+..+ +.++...|++++|..+|+++.. ..|+ ...+..++.++
T Consensus 231 ~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 231 LSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHH
Confidence 999999987 45654 344444 7889999999999999999983 3444 45788999999
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH------------H
Q 007400 466 AQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI------------Y 531 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~ 531 (605)
.+.|++++|...++++. .+.+..+|..++.+|...|++++|...|+++++..|+++..+..++.+ |
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y 385 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY 385 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence 99999999999999862 345789999999999999999999999999999999999999999844 5
Q ss_pred HhcC-----CchHHHHHHHH
Q 007400 532 SALG-----KGRLVEKVRQL 546 (605)
Q Consensus 532 ~~~g-----~~~~a~~~~~~ 546 (605)
...| +.+++.+.+++
T Consensus 386 ~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 386 KILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp GGSCSSTTCCTTHHHHHHHH
T ss_pred HHhCCCccCCHHHHHHHHHH
Confidence 5555 55666777775
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-22 Score=207.59 Aligned_cols=418 Identities=11% Similarity=0.047 Sum_probs=316.2
Q ss_pred chHHHHHHHHHHccCChHHHHHHHhhcCC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 007400 119 LFSYNNMLSGYANLGMMKHARNLFDNMAE---RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTIC 195 (605)
Q Consensus 119 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 195 (605)
...+..+...+.+.|++++|...|+++.+ .++..|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 35677888888999999999999988763 467788888889999999999999999988744 23566788888888
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC------CcchHHHHHHHHHhcCChHH
Q 007400 196 VKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR------DVLTWTTMVSGYAKLGDMES 269 (605)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~ 269 (605)
...|++++|...++ .... .|+. ....+..+...+....|...++++... ........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 89999999999886 3322 2221 122344555566667888888887653 22334455666667777777
Q ss_pred HHHHHhhCCCCChh---hHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCC--------hHHHHHHHHHHhcc
Q 007400 270 ASKLFNEMPEKNPV---SWTTLIAGYTR--------NGLGQKALELFTRMMILRIRPN--------QHTFSSCLCACASI 330 (605)
Q Consensus 270 A~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~a~~~~~~m~~~g~~p~--------~~~~~~ll~~~~~~ 330 (605)
+...+......+.. ....+...+.. .|++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 77777776654333 33333333222 25789999999998875 344 22466666778888
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
|+++.|...++.+.+.. |+...+..+...+...|++++|...|+.... +.+..+|..+...+...|++++|...++
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999875 4478888899999999999999999987542 2367789999999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC----
Q 007400 409 DMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP---- 482 (605)
Q Consensus 409 ~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 482 (605)
++.+. .| +...+..+..++...|++++|...++++... .|+ ...+..+...+...|++++|...++++.
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 99984 45 4678889999999999999999999999833 344 6788899999999999999999998752
Q ss_pred ----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 483 ----YEHDSYLWNALHGVCRIH----------GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 483 ----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.......+..++.++... |++++|...|+++++..|++..++..++.+|.+.|++++|.+.++++.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 112233355566777777 999999999999999999999999999999999999999999999987
Q ss_pred hCC
Q 007400 549 ERQ 551 (605)
Q Consensus 549 ~~~ 551 (605)
+..
T Consensus 490 ~~~ 492 (537)
T 3fp2_A 490 ILA 492 (537)
T ss_dssp HHC
T ss_pred HhC
Confidence 753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-22 Score=204.05 Aligned_cols=432 Identities=9% Similarity=-0.018 Sum_probs=283.4
Q ss_pred hhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC---CCchHHHHHHHHH
Q 007400 53 ETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV---KNLFSYNNMLSGY 129 (605)
Q Consensus 53 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 129 (605)
..+..+...+.+.|++++|.+.|+.++...+..+ .++..+..+|...|++++|...++++.+ .+..++..+...+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP--VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4455555666666666666666666666553322 2555666666666666666666665542 2334555555555
Q ss_pred HccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 007400 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209 (605)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (605)
...|++++|...|+.+. .++......+..+...+....+...++.+.... |+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~------------------------ 156 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR------------------------ 156 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc------------------------
Confidence 55555555555554322 111112222333334444455666666654321 000
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc---hHHHHHHHHH--------hcCChHHHHHHHhhCC
Q 007400 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVL---TWTTMVSGYA--------KLGDMESASKLFNEMP 278 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~--------~~~~~~~A~~~~~~~~ 278 (605)
.....|+. ..+..+....+.+.+...+......+.. ....+...+. ..|++++|..+++++.
T Consensus 157 ---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 157 ---GSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp -----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00011111 1222233334444444444333332221 1122221111 1246677777777765
Q ss_pred CC---C-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCC
Q 007400 279 EK---N-------PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNF 348 (605)
Q Consensus 279 ~~---~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 348 (605)
+. + ..++..+...+...|++++|+..|+++... .|+...+..+...+...|+++.|...+..+.+..
T Consensus 230 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 230 SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 42 2 224667778889999999999999999985 5668888889999999999999999999999876
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007400 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVI 425 (605)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l 425 (605)
+.+..++..+...+...|++++|...|+.... +.+...|..+...+...|++++|...++++.+. .| +...+..+
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 384 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFF 384 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 56788899999999999999999999997642 236778999999999999999999999999985 45 56789999
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCC----CHHHHHHHHHHHHhc----------CChHHHHHHHHhCC--CCCCHHH
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIP----NQEHHACLIELLAQA----------GCSDQLMNQLEKMP--YEHDSYL 489 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~~~~~~ 489 (605)
..++...|++++|...|+++.....-.+ ....+..+..++.+. |++++|...++++. .+.+..+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999874321111 223355666778888 99999999999862 3467889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
+..++.++...|++++|.+.|++++++.|.+.....
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999999997665544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-21 Score=196.45 Aligned_cols=363 Identities=10% Similarity=0.045 Sum_probs=223.6
Q ss_pred CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 007400 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVD 228 (605)
Q Consensus 149 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (605)
+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...++.+.+.++. +..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 34556666777777777777777777776532 235666777777777777777777777777776533 5667777777
Q ss_pred HHHhcCChHHHHHHHhhcCCCCc------chHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHH
Q 007400 229 AYAKCGELSDARRLFDETDARDV------LTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKAL 302 (605)
Q Consensus 229 ~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 302 (605)
+|.+.|++++|...|+++...++ ..+..++..+.. ..+..+...+...|++++|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHH
Confidence 77788888888777777665433 334433333110 01222333445555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-C
Q 007400 303 ELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-K 381 (605)
Q Consensus 303 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 381 (605)
..|+++.... +.+...+..+..++...|++++|..+++.+.+.. +.+..++..++.+|...|++++|...|+.+.. .
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5555555432 2344455555555555566666666665555543 34455555666666666666666666654431 1
Q ss_pred C-CcchHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 382 E-NSMLWNTM------------ISALTQHGYDEQAIRLFHDMVRSSVKPD-----KITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 382 ~-~~~~~~~l------------~~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
| +...+..+ +..+...|++++|...|+++.+ ..|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1 22333333 6777788888888888888877 4454 2367777778888888888888888
Q ss_pred HchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----CH
Q 007400 444 SMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKM-PYEH-DSYLWNALHGV------------CRIHG-----NI 503 (605)
Q Consensus 444 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~------------~~~~g-----~~ 503 (605)
++.. ..| +...+..++.+|...|++++|...++++ ...| +..++..+..+ |...| +.
T Consensus 320 ~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 320 EVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 8772 234 4677888888888888888888888775 2233 45566655533 22333 56
Q ss_pred HHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhcCCchH
Q 007400 504 DMGRKVVDQ-LIDQNPQSSA----------THGLLSSIYSALGKGRL 539 (605)
Q Consensus 504 ~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 539 (605)
+++.+.|++ +++..|++.. .+..+..+|...|+.++
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 778888887 6777776543 33445555555555443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-19 Score=176.34 Aligned_cols=301 Identities=11% Similarity=0.010 Sum_probs=194.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 007400 220 VVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMPE---KNPVSWTTLIAGYT 293 (605)
Q Consensus 220 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 293 (605)
...+..+...+...|++++|...|+++... ++..+..+...+...|++++|...++++.+ .+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 445556666666777777777666654421 333444444445555555555555544432 13344444444555
Q ss_pred hCCChHHHHHHHHHHHHCCCCC---C-hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 007400 294 RNGLGQKALELFTRMMILRIRP---N-QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~p---~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (605)
..|++++|+..|+++.+. .| + ...+..+.... . ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence 555555555555544442 22 1 11111110000 0 001122256777788888
Q ss_pred HHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 370 DGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 370 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
+|.+.++.+. .+.+...+..+...+...|++++|...++++.+. .| +..++..+..++...|++++|...++++.
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888887654 2235667777888888888888888888888874 34 56678888888888888888888888887
Q ss_pred HhhCCCCC-HHHHH------------HHHHHHHhcCChHHHHHHHHhCC--CCCCH----HHHHHHHHHHHhcCCHHHHH
Q 007400 447 HDLGIIPN-QEHHA------------CLIELLAQAGCSDQLMNQLEKMP--YEHDS----YLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 447 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~--~~~~~----~~~~~l~~~~~~~g~~~~A~ 507 (605)
.. .|+ ...+. .++..+.+.|++++|...++++. .+.+. ..+..++.++...|++++|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 32 333 22222 33667888999999999988762 12233 23556778889999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..++++++..|+++.++..++.++...|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988763
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-19 Score=174.18 Aligned_cols=321 Identities=9% Similarity=0.027 Sum_probs=241.3
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCC---CCcchHHHHHHH
Q 007400 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDA---RDVLTWTTMVSG 260 (605)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 260 (605)
|...+..+...+...|++++|...++.+.+..+ .+..++..+..++...|++++|...|+++.. .+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 456778888899999999999999999999864 3678899999999999999999999998764 256788999999
Q ss_pred HHhcCChHHHHHHHhhCCCCCh------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchH
Q 007400 261 YAKLGDMESASKLFNEMPEKNP------VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLK 334 (605)
Q Consensus 261 ~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 334 (605)
+...|++++|...|+++.+.++ ..+..+..... ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 9999999999999999865333 23333321100 011223344555566666
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 335 HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 335 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
+|...++.+.+.. +.+..++..+..++...|++++|...++.... +.+..++..+...+...|++++|...+++..+
T Consensus 138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666554 44556666777777777777777777775432 22566777778888888888888888888877
Q ss_pred CCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-H----HHHHHHHHHHHhcCChHHH
Q 007400 413 SSVKPDK-ITLA------------VILNACTHSGLVQEGLTYFESMTHDLGIIPN-Q----EHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 413 ~~~~p~~-~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A 474 (605)
. .|+. ..+. .+...+...|++++|...++++... .|+ . ..+..+..++...|++++|
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 3 4443 3322 2366688899999999999998833 333 2 3455688899999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 475 MNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 475 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
.+.+++.. .+.+..++..++.++...|++++|...|+++++..|++...+..+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99998862 3457889999999999999999999999999999999999988888887653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-18 Score=172.48 Aligned_cols=366 Identities=10% Similarity=0.001 Sum_probs=262.1
Q ss_pred CceeHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCCh
Q 007400 149 DVVSWNTMIIGYAK----SGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVK----LEELKLTRQVHGQVLVTGFLSNV 220 (605)
Q Consensus 149 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 220 (605)
++..+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 455555555555555432 34445555555554 555666666665555543 33
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHhhcCCC-CcchHHHHHHHHHh----cCChHHHHHHHhhCCC-CChhhHHHHHH
Q 007400 221 VISSSIVDAYAK----CGELSDARRLFDETDAR-DVLTWTTMVSGYAK----LGDMESASKLFNEMPE-KNPVSWTTLIA 290 (605)
Q Consensus 221 ~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~ 290 (605)
..+..|...|.. .+++++|...|++.... ++..+..+...|.. .++.++|...|++..+ .++.++..+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444455555555 55666666666555433 44455555555554 5666677777766543 36677788888
Q ss_pred HHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007400 291 GYTR----NGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS----IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362 (605)
Q Consensus 291 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (605)
.|.. .+++++|+.+|++..+.| +...+..+...+.. .+++++|...++...+.+ +...+..+..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8887 789999999999888764 45566666666664 788999999999888765 455667777778
Q ss_pred Hh----cCChHHHHHHHHhcCCCCCcchHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007400 363 SK----CGCLNDGRQVFDLTDNKENSMLWNTMISALTQH-----GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG 433 (605)
Q Consensus 363 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 433 (605)
.. .+++++|...|+......+...+..+...|... +++++|+.+|++..+.| +...+..+...|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 889999999999877666778888888888887 89999999999999864 4567777777777656
Q ss_pred ---cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 007400 434 ---LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGN 502 (605)
Q Consensus 434 ---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 502 (605)
++++|..+|++.. +. .++..+..|...|.. .+++++|.+.+++.....++..+..++..|.. .++
T Consensus 343 ~~~~~~~A~~~~~~a~-~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAA-AK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 8899999999988 32 357788889999988 89999999999987434578888899999988 899
Q ss_pred HHHHHHHHHHHHhcCC---CCCchHHHHHHHHHh
Q 007400 503 IDMGRKVVDQLIDQNP---QSSATHGLLSSIYSA 533 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~ 533 (605)
+++|...|+++.+..| +++.....++.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999984 367777777776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-16 Score=165.76 Aligned_cols=411 Identities=10% Similarity=0.108 Sum_probs=259.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCC
Q 007400 26 SLISKGQLSEAISSLDLLAQRGI--RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGS 103 (605)
Q Consensus 26 ~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 103 (605)
.+...|.+.+|+++|++..-.+- .-+...-+.++.+..+. +..+..+....+-. . ...-+...+...|.
T Consensus 994 af~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----~----d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 994 AFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----Y----DAPDIANIAISNEL 1064 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh----c----cHHHHHHHHHhCCC
Confidence 45578999999999999984321 12345555566555554 45555555444431 1 23346677777888
Q ss_pred hhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007400 104 DVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISC 183 (605)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 183 (605)
+++|..+|++.... ....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -
T Consensus 1065 yEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence 88888888887522 122222222 6677888888887664 3566778888888888888888888653 4
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHh
Q 007400 184 NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAK 263 (605)
Q Consensus 184 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 263 (605)
|...|..++.+|.+.|++++|.+.+....+... +....+.++.+|++.+++++..... ..++...|..+...|..
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHh
Confidence 677777788888888888888888877766552 3333334777788887777544443 33455566677777888
Q ss_pred cCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHH
Q 007400 264 LGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFL 343 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 343 (605)
.|++++|..+|... ..|..++..+.+.|++++|++.+++. .+..+|..+..+|...|++..|......
T Consensus 1208 eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~- 1275 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH- 1275 (1630)
T ss_pred cCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-
Confidence 88888888888775 36777888888888888888888765 3456777777777777777777665442
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC--
Q 007400 344 IRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQH--GYDEQAIRLFHDMVRSSVKP-- 417 (605)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~~~~p-- 417 (605)
+..++..+..++..|.+.|.+++|+++++.... +.....|+-+...+++- ++..++.++|..-.. ++|
T Consensus 1276 ----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~ 1349 (1630)
T 1xi4_A 1276 ----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVL 1349 (1630)
T ss_pred ----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHh
Confidence 234455666777777777888888777765432 22344565555555553 333344444442222 222
Q ss_pred ----CHHHHHHHHHHHhccCcHHHHHHHHHHchH----------hhCCCCCHHHHHHHHHHHHhcC--------------
Q 007400 418 ----DKITLAVILNACTHSGLVQEGLTYFESMTH----------DLGIIPNQEHHACLIELLAQAG-------------- 469 (605)
Q Consensus 418 ----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~~p~~~~~~~l~~~~~~~g-------------- 469 (605)
+...|.-++..|.+.|+++.|....-.-.. ...-..+++.|...+..|...+
T Consensus 1350 r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~r 1429 (1630)
T 1xi4_A 1350 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR 1429 (1630)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhc
Confidence 334666777777777777776632211110 0012334666666666666555
Q ss_pred -ChHHHHHHHHh
Q 007400 470 -CSDQLMNQLEK 480 (605)
Q Consensus 470 -~~~~A~~~~~~ 480 (605)
+.+++.+++.+
T Consensus 1430 lD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1430 LDHTRAVNYFSK 1441 (1630)
T ss_pred CChHHHHHHHHH
Confidence 66666666664
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-16 Score=164.80 Aligned_cols=352 Identities=10% Similarity=0.075 Sum_probs=271.1
Q ss_pred CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 007400 149 DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSI--SCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSI 226 (605)
Q Consensus 149 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 226 (605)
|+.--...+++|+..|.+.++++++++..-.+- .-+...-+.++.+..+. +..+..++...... .....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 445556778899999999999999999884321 12234455566666665 55666666555431 123447
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 007400 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 306 (605)
...+...|.+++|..+|++.. ......+.++ -..+++++|.++.+++. ++.+|..+..++.+.|++++|+..|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 788888999999999999975 2222223332 27788999999998774 46788899999999999999999996
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcch
Q 007400 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386 (605)
Q Consensus 307 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 386 (605)
+. -|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|.+.+++++..... ..++...
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~~~n~ad 1197 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----NGPNNAH 1197 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----hCCCHHH
Confidence 63 567788889999999999999999999888765 33334446899999999988644443 3446677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 466 (605)
|..+...|...|++++|..+|... ..|..++.++.+.|+++.|.+.+++.. +..+|..+..++.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHh
Confidence 888999999999999999999884 378999999999999999999998774 4578888889999
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--CCchHHHHHH
Q 007400 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL--GKGRLVEKVR 544 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 544 (605)
..|++..|........ .++..+..++..|...|.+++|+.++++++.++|.+...+..|+.+|.+. ++..++.+.|
T Consensus 1262 e~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998877543 56667778899999999999999999999999999999998888888874 3344444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=174.56 Aligned_cols=277 Identities=12% Similarity=0.009 Sum_probs=203.9
Q ss_pred cCChHHHHH-HHhhCCC--C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHH
Q 007400 264 LGDMESASK-LFNEMPE--K-----NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKH 335 (605)
Q Consensus 264 ~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 335 (605)
.|++++|.. .+++... + +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 5554332 1 23456666777777777777777777777653 3455566667777777777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C-CcchHHH---------------HHHHHHHcC
Q 007400 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-E-NSMLWNT---------------MISALTQHG 398 (605)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~---------------l~~~~~~~g 398 (605)
|...++.+.+.. +.+..++..+..+|...|++++|.+.|+.+... | +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777777665 455667777777777777777777777654321 1 1222211 133334889
Q ss_pred CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHH
Q 007400 399 YDEQAIRLFHDMVRSSVKPD---KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQL 474 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 474 (605)
++++|...++++.+. .|+ ..++..+..++...|++++|...++++... .|+ ...+..++.++.+.|++++|
T Consensus 196 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 196 LFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999984 454 678999999999999999999999999832 444 78899999999999999999
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCchHHH
Q 007400 475 MNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-----------SATHGLLSSIYSALGKGRLVE 541 (605)
Q Consensus 475 ~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~ 541 (605)
...++++. .+.+..++..++.++...|++++|...|+++++..|++ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999862 34578899999999999999999999999999998877 789999999999999999999
Q ss_pred HHHHHH
Q 007400 542 KVRQLI 547 (605)
Q Consensus 542 ~~~~~~ 547 (605)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 987643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-18 Score=165.87 Aligned_cols=253 Identities=8% Similarity=0.051 Sum_probs=175.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV-SLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
+...+..++..+...|++++|+.+++++.+.. +.+...+..+...+...| +++.|...++.+.+.. +.+...+..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 132 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYG 132 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHH
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 33445555566666666777776666666532 334455666666666666 6677777777666654 44556667777
Q ss_pred HHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH
Q 007400 360 DMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQ 436 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 436 (605)
.++...|++++|...|+.... +.+...+..+...+...|++++|...++++.+. .| +...+..+...+...|+++
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 210 (330)
T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWK 210 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHH
Confidence 777777777777777775442 224556666777788888888888888888774 34 4567777888888888888
Q ss_pred HHHHHHHHchHhhC-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 437 EGLTYFESMTHDLG-------IIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 437 ~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
+|...++++..... ......++..++.+|...|++++|...+++.. .+.+..++..++.++...|++++|.
T Consensus 211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 290 (330)
T 3hym_B 211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV 290 (330)
T ss_dssp HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH
Confidence 88888887763221 12235677888888888888888888887752 2346677888888888888888888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHH-hcCCc
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYS-ALGKG 537 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~ 537 (605)
..++++++..|+++..+..++.++. ..|+.
T Consensus 291 ~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 8888888888888888888888874 44553
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-17 Score=166.19 Aligned_cols=363 Identities=11% Similarity=0.015 Sum_probs=306.1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHH
Q 007400 169 GLKFYKVLRRFSISCNEFSFAGILTICVK----LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAK----CGELSDAR 240 (605)
Q Consensus 169 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 240 (605)
+.+.++...+. .+...+..+...+.. .++++.|...++...+.| +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 34555555443 367777777777776 899999999999998875 56788889999998 89999999
Q ss_pred HHHhhcCCC-CcchHHHHHHHHHh----cCChHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHH
Q 007400 241 RLFDETDAR-DVLTWTTMVSGYAK----LGDMESASKLFNEMPEK-NPVSWTTLIAGYTR----NGLGQKALELFTRMMI 310 (605)
Q Consensus 241 ~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~ 310 (605)
+.|++.... ++..+..+...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|+++|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999987765 67778888888888 88999999999987654 67788888888888 7899999999999998
Q ss_pred CCCCCChHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCCCC
Q 007400 311 LRIRPNQHTFSSCLCACAS----IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK----CGCLNDGRQVFDLTDNKE 382 (605)
Q Consensus 311 ~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 382 (605)
.| +...+..+...+.. .++.++|...+++..+.+ +...+..+...|.. .+++++|...|+......
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 65 56777778877776 899999999999999875 56677788888886 889999999999877666
Q ss_pred CcchHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHchHhhCCCC
Q 007400 383 NSMLWNTMISALTQ----HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS-----GLVQEGLTYFESMTHDLGIIP 453 (605)
Q Consensus 383 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~p 453 (605)
+...+..+...|.. .++.++|+.+|++..+.| +...+..+...|... +++++|..+|++.. +.+
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~-~~~--- 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA-EQG--- 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH-HTT---
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH-hcC---
Confidence 88888888888888 899999999999998764 566777788888776 89999999999998 422
Q ss_pred CHHHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 454 NQEHHACLIELLAQAG---CSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
+...+..|...|...| ++++|.+.+++.....++..+..++..|.. .+++++|...|+++.+.. ++.++..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~ 404 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQ 404 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHH
Confidence 4567788888888867 789999999987434688899999999998 899999999999999864 6789999
Q ss_pred HHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007400 527 LSSIYSA----LGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 527 l~~~~~~----~g~~~~a~~~~~~~~~~~~ 552 (605)
|+.+|.. .+++++|...|++..+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999 8999999999999988764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-18 Score=165.75 Aligned_cols=263 Identities=13% Similarity=0.017 Sum_probs=229.7
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 280 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888899999999999999999998753 4455667778888899999999999999999876 56778899999
Q ss_pred HHHHhcC-ChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH
Q 007400 360 DMYSKCG-CLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLV 435 (605)
Q Consensus 360 ~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 435 (605)
..+...| ++++|.+.|+.... +.+...|..+...+...|++++|...++++.+. .| +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 9999999 99999999997553 235678999999999999999999999999984 44 456788899999999999
Q ss_pred HHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCH
Q 007400 436 QEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-----------YEHDSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~ 503 (605)
++|...++++. ...|+ ...+..++..+...|++++|...+++.. .+....++..++.++...|++
T Consensus 176 ~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999998 44554 7889999999999999999999998752 134467899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 504 DMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++|...++++++..|++...+..++.++...|++++|...++++.+
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999997765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-16 Score=162.12 Aligned_cols=410 Identities=10% Similarity=0.048 Sum_probs=286.9
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcCC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 007400 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAE--R-DVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTI 194 (605)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 194 (605)
+..+|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|+++.+. .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 5678888888 4778999999999999875 3 4567888899999999999999999999874 4777777777653
Q ss_pred H-hccCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCChHHHHHHHhhcCCCCcchHHHHH
Q 007400 195 C-VKLEELKLTRQ----VHGQVLVT-GFLS-NVVISSSIVDAYAK---------CGELSDARRLFDETDARDVLTWTTMV 258 (605)
Q Consensus 195 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~li 258 (605)
. ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++...........+.
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34567766655 66666654 4433 45677777776654 67788888888877652111111111
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH------HCC---CCCCh--------HHHH
Q 007400 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM------ILR---IRPNQ--------HTFS 321 (605)
Q Consensus 259 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~------~~g---~~p~~--------~~~~ 321 (605)
..|.. ++... +..+...++. ...+++..|..++..+. +.. ++|+. ..|.
T Consensus 169 ~~~~~---~e~~~---------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 169 RDYNK---YEEGI---------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HHHHH---HHHHH---------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHHHH---HHHhh---------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 11111 11000 0000011110 12345666666665532 111 24432 2333
Q ss_pred HHHHHHhc----ccch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChH-------HHHHHHHhcC
Q 007400 322 SCLCACAS----IVSL----KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK-------CGCLN-------DGRQVFDLTD 379 (605)
Q Consensus 322 ~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~ 379 (605)
..+..... .++. ..+..+|++++... +.+..+|..++..+.+ .|+++ +|..+|+...
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 33322221 1232 36778888888864 6678888888888876 79987 8999999765
Q ss_pred C--CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC
Q 007400 380 N--KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK--ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454 (605)
Q Consensus 380 ~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 454 (605)
. .| +...|..++..+.+.|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++.. ...|+
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al---~~~~~ 388 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR---EDART 388 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TCTTC
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH---hccCC
Confidence 3 24 567899999999999999999999999999 56653 478888888889999999999999998 33443
Q ss_pred -HHHHHHHHHH-HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHH
Q 007400 455 -QEHHACLIEL-LAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA----THGL 526 (605)
Q Consensus 455 -~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~ 526 (605)
...+...+.. +...|++++|..+|++.. .+.++..|..++..+...|+.++|+.+|+++++..|.++. .|..
T Consensus 389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3344333322 346899999999999762 3456889999999999999999999999999999776665 7878
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007400 527 LSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++......|+.+.+..+.+++.+.
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999988764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=159.16 Aligned_cols=371 Identities=13% Similarity=0.121 Sum_probs=133.2
Q ss_pred hcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007400 100 KCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF 179 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 179 (605)
+.|+.++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 345555555555555333 25555555555555555555555432 34445555555555556666666655544442
Q ss_pred CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHH
Q 007400 180 SISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVS 259 (605)
Q Consensus 180 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 259 (605)
.+++.+.+.++.+|.+.|++.++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 2344555555556666666655555543 244455666666666666666666666555 35566666
Q ss_pred HHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHH
Q 007400 260 GYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQV 339 (605)
Q Consensus 260 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 339 (605)
++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..+..-...++..|.+.|.+++|..+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 666666666666666655 2555666666666666666666433332 112222233455556666666666666
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHh--cCChHHHHHHHHhcCC-C------CCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 340 HGFLIRTNFRSNTIVMSSLIDMYSK--CGCLNDGRQVFDLTDN-K------ENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~-~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
++...... +-...+|+-|.-+|++ .++..+.++.|..-.. + .+...|..+.-.|...++++.|... |
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m 305 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---M 305 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---H
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---H
Confidence 66655444 4444555555555544 2344445555543221 1 1566788888888888888888763 3
Q ss_pred HHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-------
Q 007400 411 VRSS-VKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP------- 482 (605)
Q Consensus 411 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------- 482 (605)
.++. ..-+...|.-++.--....-+-+|..++-. ..| ...+.|+.++...=+..++..++++..
T Consensus 306 ~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~------~~p--~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 306 MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE------FKP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH------HCG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHH
T ss_pred HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh------cCH--HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHH
Confidence 4421 111233333333322222222333333321 122 234445555555555555555555542
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 483 ------YEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 483 ------~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
...+..+-.++-..|....|++.-+
T Consensus 378 yl~~v~~~n~~~vnealn~l~ieeed~~~lr 408 (449)
T 1b89_A 378 YLRSVQNHNNKSVNESLNNLFITEEDYQALR 408 (449)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 2334444445555566666655443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-18 Score=168.77 Aligned_cols=259 Identities=10% Similarity=-0.027 Sum_probs=201.0
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
+...+..++..+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777777788888888888888877653 4456677777777888888888888888877765 455677778888
Q ss_pred HHHhcCChHHHHHHHHhcCCC-C-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDNK-E-----------NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP---DKITLAVI 425 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~-~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~l 425 (605)
+|...|++++|...|+.+... | ....+..+...+...|++++|...++++.+. .| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 888888888888888765421 1 1223445578889999999999999999985 44 47789999
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN 502 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 502 (605)
...+...|++++|...++++... .| +..++..++.+|.+.|++++|...++++. .+.+..++..++.+|...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 99999999999999999999832 44 47899999999999999999999998862 34568899999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 503 IDMGRKVVDQLIDQNPQ------------SSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
+++|...|++++++.|+ +...|..++.++...|+.+.+..+.+.
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999776 367899999999999999999887764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=149.27 Aligned_cols=268 Identities=10% Similarity=-0.018 Sum_probs=200.7
Q ss_pred HhcCChHHHHHHHhhCCCCCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHH
Q 007400 262 AKLGDMESASKLFNEMPEKNP----VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK 337 (605)
Q Consensus 262 ~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 337 (605)
...|++..|+..++.....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345666666666666554322 2334566777888888887776644 13556667777777777888888888
Q ss_pred HHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007400 338 QVHGFLIRTNF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK 416 (605)
Q Consensus 338 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 416 (605)
+.++.+...+. +.+...+..+..++...|++++|++.++. +.+...+..++..+.+.|++++|.+.++++.+. .
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 88888777654 34556677778899999999999999998 447788999999999999999999999999984 5
Q ss_pred CCHHHH---HHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHH
Q 007400 417 PDKITL---AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWN 491 (605)
Q Consensus 417 p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 491 (605)
|+.... ..++..+...|++++|..+|+++... .+.+...++.++.++.+.|++++|...+++.. .+.++.++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 665322 22334455669999999999999843 34568889999999999999999999999862 345788899
Q ss_pred HHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007400 492 ALHGVCRIHGNIDM-GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 492 ~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
.++..+...|+.++ +.++++++++..|+++.+. +...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 99999999998875 6789999999999877644 3555566666665544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-17 Score=164.32 Aligned_cols=385 Identities=10% Similarity=0.004 Sum_probs=197.4
Q ss_pred ceeHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCC-----
Q 007400 150 VVSWNTMIIGYAKSGAVEEGLKFYKVLRRF-----S--ISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGF----- 216 (605)
Q Consensus 150 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----- 216 (605)
...||.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...++++.+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456788888888888888888888876541 1 112 334677777777777777777777777655311
Q ss_pred -C-CChhHHHHHHHHHHhc--CChHHHHHHHhhcCCC---CcchHHHHHHH---HHhcCChHHHHHHHhhCCC---CChh
Q 007400 217 -L-SNVVISSSIVDAYAKC--GELSDARRLFDETDAR---DVLTWTTMVSG---YAKLGDMESASKLFNEMPE---KNPV 283 (605)
Q Consensus 217 -~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~---~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~---~~~~ 283 (605)
. ....++..+..++.+. +++++|...|++.... ++..+..+... +...++.++|++.+++..+ .+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 1 1233444444444443 3466666666654421 22333333222 2233444444444443321 2333
Q ss_pred hHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 284 SWTTLIAGYTR----NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 284 ~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|+++.|...+.++.+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 33333333322 234445555555544432 2333444444555555555555555555555443 23333444444
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHH
Q 007400 360 DMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a 438 (605)
.+|...+....+. .. ..........+..+.|...+++..+. .| +..++..+...+...|++++|
T Consensus 289 ~~y~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 289 CCYRAKVFQVMNL------RE-------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhhH------HH-------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHH
Confidence 3332211100000 00 00000011123456788888888773 44 345778888889999999999
Q ss_pred HHHHHHchHhhCCCCCH--HHHHHHHHH-HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007400 439 LTYFESMTHDLGIIPNQ--EHHACLIEL-LAQAGCSDQLMNQLEKM-PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (605)
...|+++. +....|.. ..+..+... +...|++++|+..+++. ...|+...+. +....+..++++.+
T Consensus 354 ~~~~~kaL-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 354 EYYFQKEF-SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHH
Confidence 99999887 32222221 123333332 35678899999988875 3445433322 22345667788889
Q ss_pred hcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEE
Q 007400 515 DQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWI 561 (605)
Q Consensus 515 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 561 (605)
+.+|+++.++..+|.+|...|++++|++.|++..+.+.......+|+
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999999999999999988776555555553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-17 Score=158.17 Aligned_cols=287 Identities=13% Similarity=0.128 Sum_probs=96.8
Q ss_pred HccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHH
Q 007400 130 ANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHG 209 (605)
Q Consensus 130 ~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 209 (605)
.+.|++++|.+.++++..| .+|+.|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3567899999999999665 48999999999999999999999753 678899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHH
Q 007400 210 QVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLI 289 (605)
Q Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 289 (605)
...+. .++..+.+.|+.+|.+.|+++++.++++. ++..+|..++..|...|.+++|...|..+ ..|..++
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77764 34567788899999999999988877753 45557777777777777777777777766 3566777
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 007400 290 AGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLN 369 (605)
Q Consensus 290 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (605)
.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~------------------------------- 198 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM------------------------------- 198 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH-------------------------------
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH-------------------------------
Confidence 7777777777777777665 245566666666666666666633
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCcHHHHHHHHHHchH
Q 007400 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH--SGLVQEGLTYFESMTH 447 (605)
Q Consensus 370 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~ 447 (605)
....+.. ++.-...++..|.+.|++++|..+++..+... +-....|+.+..+|++ .++..+.++.|. +
T Consensus 199 ----~~l~L~~--~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~ 268 (449)
T 1b89_A 199 ----CGLHIVV--HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---S 268 (449)
T ss_dssp ----TTTTTTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---T
T ss_pred ----HHHHHHh--CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---H
Confidence 2222221 11112235555566666666666666555422 1122344444444433 233333333332 1
Q ss_pred hhCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 448 DLGIIP------NQEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 448 ~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
+.+++| +...|..++-.|...++++.|...+-+-
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 223333 2456667777777777777776655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=159.51 Aligned_cols=259 Identities=9% Similarity=-0.061 Sum_probs=196.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (605)
..+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666677777777777777766542 3355566666666777777777777777776654 44566667777777
Q ss_pred HhcCChHHHHHHHHhcCCC-C-CcchHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDNK-E-NSMLWNTM--------------IS-ALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVI 425 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 425 (605)
...|++++|.+.++.+... | +...+..+ .. .+...|++++|...++++.+.. +.+..++..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 7777777777777654321 1 22233222 22 3677889999999999999853 2367789999
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN 502 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 502 (605)
...+...|++++|...++++... .| +...+..++..+...|++++|...++++. .+.+..++..++.++...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999832 34 47789999999999999999999998862 34568889999999999999
Q ss_pred HHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 503 IDMGRKVVDQLIDQNPQ------------SSATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
+++|...++++++..|+ +...+..++.++...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 6889999999999999999999998754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-15 Score=156.71 Aligned_cols=418 Identities=9% Similarity=0.042 Sum_probs=289.0
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchHHHHHHHHHHccCChHHHHHHHhhcCC--CC
Q 007400 75 HLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPV--K-NLFSYNNMLSGYANLGMMKHARNLFDNMAE--RD 149 (605)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~ 149 (605)
++..++..+. ....+..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~P~--~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEENPY--DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHCTT--CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhCCC--CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 4455555533 3337888887 4789999999999999875 3 456899999999999999999999999875 66
Q ss_pred ceeHHHHHHHH-HhcCChHHHHH----HHHHHHh-CCCCC-ChhhHHHHHHHHhc---------cCChHHHHHHHHHHHH
Q 007400 150 VVSWNTMIIGY-AKSGAVEEGLK----FYKVLRR-FSISC-NEFSFAGILTICVK---------LEELKLTRQVHGQVLV 213 (605)
Q Consensus 150 ~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 213 (605)
...|...+... ...|+.+.|.+ +|+.... .|..| +...|...+....+ .|+++.|..+|+..++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66676666533 35688877765 7776654 35554 45567777776544 6889999999999987
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhh----------CC---CC
Q 007400 214 TGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNE----------MP---EK 280 (605)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----------~~---~~ 280 (605)
.........|..........|. ..+..++.+ +.++++.|..++.. .. .|
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 3111112334333222111111 111111111 12233334333322 11 11
Q ss_pred C--------hhhHHHHHHHHHhC----CCh----HHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-------ccchH---
Q 007400 281 N--------PVSWTTLIAGYTRN----GLG----QKALELFTRMMILRIRPNQHTFSSCLCACAS-------IVSLK--- 334 (605)
Q Consensus 281 ~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~--- 334 (605)
+ ...|...+...... ++. ..|..+|++.... .+.+...|......+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 23555555433332 232 4778889888874 24456677777766664 68877
Q ss_pred ----HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCC-c-chHHHHHHHHHHcCCHHHHHHHH
Q 007400 335 ----HGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KEN-S-MLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 335 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~-~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
.|..++++.++.-.+.+...+..++..+.+.|++++|..+|+.+.. .|+ . ..|..++..+.+.|+.++|..+|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999998733356788899999999999999999999997653 333 2 47888898899999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHH-HhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 007400 408 HDMVRSSVKPD-KITLAVILNA-CTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP-- 482 (605)
Q Consensus 408 ~~m~~~~~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 482 (605)
++..+. .|+ ...+...+.. +...|++++|..+|++..+. .| +...+..++..+.+.|+.++|..+|++..
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999984 343 3344333322 33589999999999999844 34 47889999999999999999999999862
Q ss_pred --CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 483 --YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 483 --~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
..| ....|...+......|+.+.+..+++++.+..|+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 122 2458888888889999999999999999999884
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=159.90 Aligned_cols=275 Identities=11% Similarity=0.023 Sum_probs=204.2
Q ss_pred ChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHH-HHHHHHHCCC-CC--ChHHHHHHHHHHhcccchHHHHHHHH
Q 007400 266 DMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE-LFTRMMILRI-RP--NQHTFSSCLCACASIVSLKHGKQVHG 341 (605)
Q Consensus 266 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~ 341 (605)
.++.+...|+.+...+.. ++...|++++|+. .|++...... .| +...+..+...+...|++++|...++
T Consensus 16 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 88 (368)
T 1fch_A 16 FWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFE 88 (368)
T ss_dssp -------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444555555443322 3345588999998 8886654321 11 34567788899999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007400 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK 419 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 419 (605)
.+.+.. +.+..++..+..+|...|++++|...|+... .+.+..++..++..+...|++++|...++++... .|+.
T Consensus 89 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~ 165 (368)
T 1fch_A 89 AAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAY 165 (368)
T ss_dssp HHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTT
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCc
Confidence 999876 6678889999999999999999999999754 2337788999999999999999999999999984 4443
Q ss_pred H-HHHH---------------HHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 007400 420 I-TLAV---------------ILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP- 482 (605)
Q Consensus 420 ~-~~~~---------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 482 (605)
. .+.. .+..+...|++++|...++++.......++..++..++.+|.+.|++++|...++++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2211 1333348899999999999998432222247899999999999999999999998862
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 483 -YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 483 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+.+..++..++..+...|++++|+..|+++++..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34568899999999999999999999999999999999999999999999999999999999998764
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-17 Score=150.17 Aligned_cols=248 Identities=10% Similarity=0.029 Sum_probs=202.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 007400 289 IAGYTRNGLGQKALELFTRMMILRIRPNQ--HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366 (605)
Q Consensus 289 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (605)
+......|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456778999999999987654 34443 3556678899999999999976644 23567788889999999999
Q ss_pred ChHHHHHHHHhcC-C--CC-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007400 367 CLNDGRQVFDLTD-N--KE-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442 (605)
Q Consensus 367 ~~~~A~~~~~~~~-~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 442 (605)
+.++|++.++.+. . .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999853 2 23 556677788899999999999999987 356779999999999999999999999
Q ss_pred HHchHhhCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 443 ESMTHDLGIIPNQE---HHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 443 ~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
+++... .|+.. ....++..+...|++++|..+|+++. .+.++..++.++.++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999833 45532 11233344555699999999999872 45788999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchH-HHHHHHHHHhCC
Q 007400 518 PQSSATHGLLSSIYSALGKGRL-VEKVRQLINERQ 551 (605)
Q Consensus 518 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~ 551 (605)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578888887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-17 Score=157.34 Aligned_cols=233 Identities=10% Similarity=-0.009 Sum_probs=196.4
Q ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHH
Q 007400 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISA 393 (605)
Q Consensus 316 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 393 (605)
+...+..+...+...|++++|..+++.+.+.. +.+..++..+..+|...|++++|+..|+.... +.+..+|..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44558888899999999999999999999886 66788999999999999999999999997652 3367889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHH
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKI-----------TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLI 462 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 462 (605)
|...|++++|+..++++.+ ..|+.. .+..+..++...|++++|..+++++.......++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 345432 233457889999999999999999994422222588999999
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
..|.+.|++++|.+.++++. .+.+..+|..++.++...|++++|+..|+++++..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999862 3467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 007400 541 EKVRQLINERQ 551 (605)
Q Consensus 541 ~~~~~~~~~~~ 551 (605)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999987643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-16 Score=155.65 Aligned_cols=381 Identities=12% Similarity=0.021 Sum_probs=237.1
Q ss_pred CchHHHHHHHHHHccCChHHHHHHHhhcCC------------CCceeHHHHHHHHHhcCChHHHHHHHHHHHhC-----C
Q 007400 118 NLFSYNNMLSGYANLGMMKHARNLFDNMAE------------RDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRF-----S 180 (605)
Q Consensus 118 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 180 (605)
....||.+...+...|++++|++.|++..+ ....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 356799999999999999999999987531 23468999999999999999999999987641 1
Q ss_pred -CCC-ChhhHHHHHHHHh--ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhcCChHHHHHHHhhcCC---CC
Q 007400 181 -ISC-NEFSFAGILTICV--KLEELKLTRQVHGQVLVTGFLSNVVISSSIVDA---YAKCGELSDARRLFDETDA---RD 250 (605)
Q Consensus 181 -~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~---~~ 250 (605)
..+ ...++.....++. ..+++++|...|++.++..+. +...+..+..+ +...++.++|.+.+++... .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 111 2345655554544 346799999999999988643 45555555554 4456778888888877653 24
Q ss_pred cchHHHHHHHHHh----cCChHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHH
Q 007400 251 VLTWTTMVSGYAK----LGDMESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSC 323 (605)
Q Consensus 251 ~~~~~~li~~~~~----~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 323 (605)
...+..+...+.. .+++++|.+.+++... .+..++..+...|...|++++|+..+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 5556655555444 4678899999987653 467789999999999999999999999998752 3344455555
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHH
Q 007400 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDE 401 (605)
Q Consensus 324 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 401 (605)
..++...+.... ... . ..........+.++.|...|+... .+.+..++..+...+...|+++
T Consensus 288 g~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 554432211110 000 0 001111112233567777776543 2336778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007400 402 QAIRLFHDMVRSSVKPDKI--TLAVILN-ACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 402 ~a~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 478 (605)
+|+..|++.++....|... .+..+.. .....|++++|+..|++.. .+.|+........ ..+..++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------HHHHHHH
Confidence 9999999999854333221 2333332 3457899999999999988 4566643322222 2233333
Q ss_pred HhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 479 EKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 479 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
++. ..+.++.+|..++.++...|++++|++.|+++++..|.++.+...+|
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 12456789999999999999999999999999999888887766554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-16 Score=139.29 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=155.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007400 349 RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVI 425 (605)
Q Consensus 349 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l 425 (605)
+++...+..+...+.+.|++++|...|+.... +.+...+..+...+.+.|++++|+..+++.++ +.|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667778888888889999999998886542 23677888899999999999999999999998 4564 5688888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHH
Q 007400 426 LNACTHS-----------GLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEHDSYLWNA 492 (605)
Q Consensus 426 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 492 (605)
..++... |++++|+..++++. ...|+ ...+..+..+|...|++++|+..+++.. ...++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAE---RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 9999999 99999999999998 34565 7788999999999999999999998862 1178889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
++.++...|++++|+..|+++++..|+++..+..++.++...|++++|+..+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999865
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-16 Score=150.25 Aligned_cols=231 Identities=10% Similarity=0.055 Sum_probs=135.1
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHH--
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL-- 358 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-- 358 (605)
+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 131 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQ 131 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhH
Confidence 33444445555555555555555555554431 2234444445555555555555555555555433 1122222222
Q ss_pred ------------HH-HHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 007400 359 ------------ID-MYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITL 422 (605)
Q Consensus 359 ------------~~-~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~ 422 (605)
.. .+...|++++|...++.+.. +.+...+..+...+...|++++|...++++.+. .| +..++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 209 (327)
T 3cv0_A 132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLW 209 (327)
T ss_dssp --------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 22 25556666666666665431 224566667777777777777777777777763 33 45567
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-------------CH
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-------------DS 487 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------------~~ 487 (605)
..+..++...|++++|...++++... .| +...+..++.+|.+.|++++|.+.++++. ..| +.
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 77777777777777777777777622 33 35667777777777777777777776641 112 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.+|..++.++...|++++|..+++++++..|
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 6777778888888888888888777666533
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-15 Score=139.37 Aligned_cols=224 Identities=8% Similarity=-0.027 Sum_probs=164.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY 362 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (605)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345556666666666666666666665544 445555555555555555555555555544321000
Q ss_pred HhcCChHHHHHHHHhcCCCCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDNKEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEG 438 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 438 (605)
.++ ..+|..+...+...|++++|...++++.+ +.|+. ..+...|++++|
T Consensus 72 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 72 ------------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp ------------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHH
T ss_pred ------------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHH
Confidence 001 45677777888888888888888888887 45553 345556788889
Q ss_pred HHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 439 LTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 439 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
...++++. ...|+ ...+..++..+...|++++|...+++.. .+.+..++..++.++...|++++|...++++++
T Consensus 125 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEA---YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHH---HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88888887 34454 6678888888999999999999988762 345688889999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 516 QNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 516 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..|+++..+..++.++...|++++|...++++.+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=138.07 Aligned_cols=234 Identities=10% Similarity=0.013 Sum_probs=172.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC----hHHHHHH
Q 007400 252 LTWTTMVSGYAKLGDMESASKLFNEMPE--KNPVSWTTLIAGYTRNGLGQKALELFTRMMILR--IRPN----QHTFSSC 323 (605)
Q Consensus 252 ~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~l 323 (605)
..+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..+++..+.. ..++ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4677888999999999999999987643 677889999999999999999999999987632 1112 3455555
Q ss_pred HHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHH
Q 007400 324 LCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQA 403 (605)
Q Consensus 324 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 403 (605)
...+...|++++|...++.+.+.. | + ...+...|++++|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~--------------------------------~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--R--------------------------------T-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--C--------------------------------C-------HHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--c--------------------------------h-------hHHHHHHhHHHHH
Confidence 666666666666666666655532 1 1 1235555677777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 404 IRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 404 ~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
...++++.. ..|+ ...+..+...+...|++++|...++++... .+.+..++..++.+|.+.|++++|...+++..
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 777777777 3443 457777777788888888888888887732 12236777788888888888888888887752
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 007400 483 --YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN------PQSSATHGLLSSI 530 (605)
Q Consensus 483 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 530 (605)
.+.+..+|..++.++...|++++|...++++++.. |++...+..+..+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 34567888889999999999999999999999987 8776666665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-14 Score=144.68 Aligned_cols=344 Identities=11% Similarity=0.041 Sum_probs=141.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007400 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEEL---KLTRQVHGQVLVTGFLSNVVISSSIVDAYAK 232 (605)
Q Consensus 156 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 232 (605)
+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|...|+...+. +...+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566677777777777666544 233334444444445555 6666666665533 33344444443434
Q ss_pred cC-----ChHHHHHHHhhcCCC-CcchHHHHHHHHHhcCChHHH---HHHHhhCCC-CChhhHHHHHHHHHhCCChHHHH
Q 007400 233 CG-----ELSDARRLFDETDAR-DVLTWTTMVSGYAKLGDMESA---SKLFNEMPE-KNPVSWTTLIAGYTRNGLGQKAL 302 (605)
Q Consensus 233 ~g-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A---~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~ 302 (605)
.| +.++|...|++...+ ++..+..+...|...+..+++ .+.+..... .++..+..+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 33 455566555554433 334444444444443332222 122211111 13334444444444444333332
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHhccc---chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 303 ELFTRMMILRIRPNQHTFSSCLCACASIV---SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 303 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
.....+.+.-...+...+..+...+...| +.++|...|+...+.| +++...+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~------------------------ 216 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV------------------------ 216 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH------------------------
Confidence 22222111101111113333444444444 4444444444444444 2222222
Q ss_pred CCCCcchHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHchHhhCCC
Q 007400 380 NKENSMLWNTMISALTQH----GYDEQAIRLFHDMVRSSVKPDKITLAVILNA-C--THSGLVQEGLTYFESMTHDLGII 452 (605)
Q Consensus 380 ~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~ 452 (605)
..+...|... +++++|+.+|++.. .| +...+..+... + ...+++++|..+|++.. +.|
T Consensus 217 --------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g-- 281 (452)
T 3e4b_A 217 --------DSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD-- 281 (452)
T ss_dssp --------HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT--
T ss_pred --------HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC--
Confidence 3344333322 45555555555544 11 23333333333 2 23455555555555554 222
Q ss_pred CCHHHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCch
Q 007400 453 PNQEHHACLIELLAQAG-----CSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 453 p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
+...+..|...|. .| ++++|...|++.. +.++..+..++..|.. ..++++|...|+++.+. .++..
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A 356 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSA 356 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTH
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHH
Confidence 3444444454444 33 5555555555555 4455555555544443 22555555555555442 24445
Q ss_pred HHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007400 524 HGLLSSIYSA----LGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 524 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 551 (605)
...|+.+|.. ..+..+|...++...+.|
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 5555555553 235555555555555544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-15 Score=137.62 Aligned_cols=242 Identities=11% Similarity=-0.029 Sum_probs=184.9
Q ss_pred hCCChHHHHHHHHHHHHCCCC---CChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007400 294 RNGLGQKALELFTRMMILRIR---PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370 (605)
Q Consensus 294 ~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (605)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875321 134567777788888888888888888888775 5567788888888999999999
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHh
Q 007400 371 GRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHD 448 (605)
Q Consensus 371 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 448 (605)
|...|+.... +.+..++..+...+...|++++|...++++.+ ..|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998887552 23677889999999999999999999999998 4666655555555667779999999999888733
Q ss_pred hCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 449 LGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 449 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
.+++...+ .++..+...++.++|.+.+++.. ..| +..++..++..+...|++++|...|+++++..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 22333333 46777888888899999998763 222 1577888999999999999999999999999997654
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 007400 523 THGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
. .+.++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 467888889999988876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-15 Score=147.58 Aligned_cols=371 Identities=9% Similarity=0.013 Sum_probs=224.8
Q ss_pred HHHHHHHccCChHHHHHHHhhcCC-CCceeHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 007400 124 NMLSGYANLGMMKHARNLFDNMAE-RDVVSWNTMIIGYAKSGAV---EEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199 (605)
Q Consensus 124 ~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 199 (605)
.+...+.+.|++++|.++|++..+ .+...+..|...|...|++ ++|.++|++..+. ++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 356777889999999999998764 4566777777888888888 8999999998863 5566666766454444
Q ss_pred -----ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH---HHHHHhhcCC-CCcchHHHHHHHHHhcCC----
Q 007400 200 -----ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSD---ARRLFDETDA-RDVLTWTTMVSGYAKLGD---- 266 (605)
Q Consensus 200 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~-~~~~~~~~li~~~~~~~~---- 266 (605)
++++|...|+...+.|.. ..+..|...|...+..+. +.+.+..... .++..+..+...|...+.
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 788999999999987743 366778888887765444 3444444332 367788888888888884
Q ss_pred hHHHHHHHhhCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc----cchHHHHHH
Q 007400 267 MESASKLFNEMPEKNPVSWTTLIAGYTRNG---LGQKALELFTRMMILRIRPNQHTFSSCLCACASI----VSLKHGKQV 339 (605)
Q Consensus 267 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~~~~a~~~ 339 (605)
.+.+..+++.....++..+..+...|...| +.++|+.+|++..+.| .++...+..+...|... +++++|...
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 555666677777777789999999999999 9999999999999987 45555545566666544 566666666
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCC
Q 007400 340 HGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISA-L--TQHGYDEQAIRLFHDMVRSSVK 416 (605)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~~~~ 416 (605)
|+... .| ++..+..+... + ...+++++|+.+|++..+.|
T Consensus 240 ~~~aa-~g-----------------------------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 240 LEKIA-PG-----------------------------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHHHG-GG-----------------------------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred HHHHc-CC-----------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence 66655 22 33344444443 2 23566666666666666654
Q ss_pred CCHHHHHHHHHHHhccC-----cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCH
Q 007400 417 PDKITLAVILNACTHSG-----LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHDS 487 (605)
Q Consensus 417 p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 487 (605)
+...+..+...|. .| ++++|..+|++.. .-++.....|...|.. ..++++|..+|++.....+.
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 4455555555554 33 6677777776554 2235556666666655 23677777777765333445
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh--cCCchHHHHHHHHHHh
Q 007400 488 YLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA--LGKGRLVEKVRQLINE 549 (605)
Q Consensus 488 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~ 549 (605)
.....|+..|.. ..+.++|...|+++.+..+ +.....+..+... .++..+|....++..+
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 555566666653 3578888888888877653 2333334443322 2345566666665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-15 Score=136.06 Aligned_cols=245 Identities=9% Similarity=-0.019 Sum_probs=145.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHH
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN--TIVMSSLIDMY 362 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 362 (605)
+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444555566666666666666665532 22233555555566666666666666666655221111 12255666666
Q ss_pred HhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~ 439 (605)
...|++++|...|+.... +.+..+|..+...+...|++++|+..+++.++. .| +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665431 224456666666777777777777777666663 34 3445555552333334777777
Q ss_pred HHHHHchHhhCCCCC-HHHHHHHHHHHHhcCC---hHHHHHHHHhCC----CCCC------HHHHHHHHHHHHhcCCHHH
Q 007400 440 TYFESMTHDLGIIPN-QEHHACLIELLAQAGC---SDQLMNQLEKMP----YEHD------SYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~g~~~~ 505 (605)
..|+++.+ ..|+ ...+..+..++...|+ +++|...+++.. ..|+ ..+|..++..|...|++++
T Consensus 163 ~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 163 SSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777662 2333 5566666666666666 555555555431 1122 2467778888999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALG 535 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 535 (605)
|...|+++++.+|+++.++..+..+....+
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 999999999999999888888877765544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-16 Score=162.74 Aligned_cols=126 Identities=11% Similarity=0.139 Sum_probs=113.1
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhhcC-------CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 007400 120 FSYNNMLSGYANLGMMKHARNLFDNMA-------ERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGIL 192 (605)
Q Consensus 120 ~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 192 (605)
.+|+++|++|++.|++++|.++|+.|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 689999999999999999999997753 5899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 007400 193 TICVKLEEL-KLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDE 245 (605)
Q Consensus 193 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 245 (605)
.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++..+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 999999985 78999999999999999999999999877765544444444333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-13 Score=127.70 Aligned_cols=224 Identities=10% Similarity=-0.036 Sum_probs=144.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCChhHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS----IVSLKHGKQVHGFLIRTNFRSNTIVMS 356 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 356 (605)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4445555666666666666666666666552 223344444444444 445555555554444432
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ----HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH- 431 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 431 (605)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 45555556666666 677777777777766643 55666666666666
Q ss_pred ---cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 007400 432 ---SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI----H 500 (605)
Q Consensus 432 ---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~ 500 (605)
.+++++|..+|++.. +.+ +...+..+...|.. .+++++|...+++.....+...+..++..+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKAC-DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHH-hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 677777777777766 322 44556666666766 77777777777765323456677777777777 7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA----LGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 551 (605)
+++++|+..|+++++..| +..+..++.+|.. .|++++|...+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888888887755 6677788888888 888888888888877655
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-14 Score=137.96 Aligned_cols=247 Identities=11% Similarity=0.106 Sum_probs=202.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccc-hHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVS-LKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
+...|..+...+.+.|++++|+..+++++... +-+...|..+..++...|+ +++|...++++++.+ +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34568888888899999999999999988753 3356677888888888896 999999999999887 66788899999
Q ss_pred HHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCcH
Q 007400 360 DMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTH-SGLV 435 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~-~g~~ 435 (605)
.++...|++++|+..|+.+. .+.+..+|..+..++...|++++|+..++++++ +.| +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999998755 233778899999999999999999999999999 456 56789999988888 5654
Q ss_pred HHH-----HHHHHHchHhhCCCCC-HHHHHHHHHHHHhcC--ChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC-----
Q 007400 436 QEG-----LTYFESMTHDLGIIPN-QEHHACLIELLAQAG--CSDQLMNQLEKMPY-EHDSYLWNALHGVCRIHG----- 501 (605)
Q Consensus 436 ~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g----- 501 (605)
++| +..++++. .+.|+ ...|..+..++...| ++++|.+.+.++.. +.+..++..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 58888887 34565 678888999999888 68999998887743 345778888888888764
Q ss_pred ---C-HHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 007400 502 ---N-IDMGRKVVDQL-IDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 502 ---~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 534 (605)
+ +++|+++|+++ ++.+|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 899999999999888877643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-16 Score=159.01 Aligned_cols=147 Identities=7% Similarity=0.043 Sum_probs=114.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhC-------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007400 252 LTWTTMVSGYAKLGDMESASKLFNEM-------PEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCL 324 (605)
Q Consensus 252 ~~~~~li~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 324 (605)
.+|+++|++||+.|++++|.++|.+| ..||+.+||+||.+|++.|++++|.++|++|...|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35666666666666666666777554 35899999999999999999999999999999999999999999999
Q ss_pred HHHhcccch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CCcchHHHHHHHHHHcC
Q 007400 325 CACASIVSL-KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK----ENSMLWNTMISALTQHG 398 (605)
Q Consensus 325 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~g 398 (605)
.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+..+ |.+.+...|...|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999998777754444444443333322 12334455556666544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-13 Score=126.58 Aligned_cols=225 Identities=10% Similarity=-0.032 Sum_probs=166.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEK-NPVSWTTLIAGYTR----NGLGQKALELFTRMMILRIRPNQHTFSSCL 324 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 324 (605)
++.++..+...+...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667888889999999999999999988765 66788889999999 999999999999999875 667777777
Q ss_pred HHHhc----ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHH----
Q 007400 325 CACAS----IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ---- 396 (605)
Q Consensus 325 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~---- 396 (605)
..+.. .+++++|...+++..+.+ +..++..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK-----------------------------------YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHHHCSSS
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC-----------------------------------CccHHHHHHHHHHcCCCc
Confidence 77777 778888888887776654 33344445555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----c
Q 007400 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH----SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----A 468 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 468 (605)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++.. +. .+...+..+..+|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-DL---KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCCC
Confidence 666666777776666643 44555566666665 677777777777766 22 234566667777777 7
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 007400 469 GCSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 469 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 519 (605)
+++++|.+.+++.....+...+..++..|.. .+++++|...|+++++..|+
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 7777777777765322346677778888887 88999999999999988874
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=127.58 Aligned_cols=227 Identities=9% Similarity=-0.042 Sum_probs=188.4
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-Ccc----hHHHHHH
Q 007400 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSM----LWNTMIS 392 (605)
Q Consensus 318 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~~l~~ 392 (605)
..+......+...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...|+.....| +.. +|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556778889999999999999999876 5566788899999999999999999999765432 322 3888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCC
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGC 470 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 470 (605)
.+...|++++|+..+++..+. .| +..++..+..++...|++++|...++++. ...|+ ...+..+...+...++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999984 45 56799999999999999999999999998 44565 6778888834445569
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhcCCc
Q 007400 471 SDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN---IDMGRKVVDQLIDQN---PQS-----SATHGLLSSIYSALGKG 537 (605)
Q Consensus 471 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~ 537 (605)
+++|.+.++++. .+.+...+..++.++...|+ +++|...++++++.. |+. ..++..++.+|...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999998862 34457888888889988888 889999999999884 532 25788899999999999
Q ss_pred hHHHHHHHHHHhC
Q 007400 538 RLVEKVRQLINER 550 (605)
Q Consensus 538 ~~a~~~~~~~~~~ 550 (605)
++|.+.++++.+.
T Consensus 238 ~~A~~~~~~al~~ 250 (272)
T 3u4t_A 238 VKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999874
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-13 Score=124.57 Aligned_cols=196 Identities=9% Similarity=-0.043 Sum_probs=149.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNA 428 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~ 428 (605)
...+..+...+...|++++|.+.|+.+.. +.+...+..+...+...|++++|.+.++++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 34556666677777777777777765432 225667777788888888888888888888774 34 55677778888
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 505 (605)
+...|++++|..+++++.. .+..|+ ...+..++..+...|++++|...+++.. .+.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888873 234554 5677788888888888888888887752 23467778888888888889999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 506 GRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
|...++++++..|++...+..++.++...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999998888888888888888888888889999988888888764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=123.58 Aligned_cols=205 Identities=16% Similarity=0.063 Sum_probs=97.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
++..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33455555666666666666666666665532 2334455555555555566666665555555544 333444444444
Q ss_pred HHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 439 (605)
++...+.. .+. .+...|++++|+..+++.++ +.|+ ...+..+..++...|++++|+
T Consensus 82 ~~~~~~~~------------~~~---------~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 82 AYVALYRQ------------AED---------RERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp HHHHHHHT------------CSS---------HHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhhh------------hhh---------hcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHH
Confidence 44444000 000 00011555555555555555 3342 345555555555566666666
Q ss_pred HHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007400 440 TYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (605)
..|+++. +.. .+...+..+..+|...|++++|+..+++.. .+.+...+..++.++...|++++|...++++
T Consensus 139 ~~~~~al-~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 139 ASLKQAL-ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHH-hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6665555 223 445555555556666666666665555541 2334555555555666666666666655554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=119.86 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=142.3
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
++..|..+...|...|++++|+..|++.++ +.| +..++..+..++...|++++|...++.+.. ..|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 566788899999999999999999999988 456 456888899999999999999999998873 2343 667788
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
+...+...++++.|.+.+++.. .+.+...+..++.++...|++++|++.|+++++.+|+++.++..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8888999999999999988762 34578889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 007400 539 LVEKVRQLINERQ 551 (605)
Q Consensus 539 ~a~~~~~~~~~~~ 551 (605)
+|++.|++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-13 Score=133.33 Aligned_cols=225 Identities=12% Similarity=0.084 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhcCC--CCCcchHHHHHHHH
Q 007400 318 HTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGC-LNDGRQVFDLTDN--KENSMLWNTMISAL 394 (605)
Q Consensus 318 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~--~~~~~~~~~l~~~~ 394 (605)
..|..+...+...|++++|...++++++.. +.+..+|..+..++...|+ +++|+..|++... +.+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667778888999999999999999987 6678899999999999997 9999999997652 23778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHh-cCCh
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQ-AGCS 471 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~ 471 (605)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..++++. .+.|+ ...|+.+..++.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al---~l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL---KEDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 566 56799999999999999999999999999 34565 7899999999999 6665
Q ss_pred HHH-----HHHHHhC-C-CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-------
Q 007400 472 DQL-----MNQLEKM-P-YEHDSYLWNALHGVCRIHG--NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG------- 535 (605)
Q Consensus 472 ~~A-----~~~~~~~-~-~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 535 (605)
++| ++.+++. . .+.+...|..++.++...| ++++|++.++++ +..|++..++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4667665 2 3457889999999998888 689999999998 889999999999999999975
Q ss_pred --CchHHHHHHHHH-Hh
Q 007400 536 --KGRLVEKVRQLI-NE 549 (605)
Q Consensus 536 --~~~~a~~~~~~~-~~ 549 (605)
.+++|+.+++++ .+
T Consensus 331 ~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 331 EDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 258999999988 54
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-14 Score=129.43 Aligned_cols=144 Identities=11% Similarity=0.072 Sum_probs=72.9
Q ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 384 SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++.
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 3444445555555555555555555555421 123445555555555555555555555555421 1112444555555
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 464 LLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 464 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
.+.+.|++++|...++++. .+.+..++..++.++...|++++|...++++++..|++...+..++.+
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 5555555555555555431 123445555555555555666666666666655555555555544443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.9e-13 Score=122.70 Aligned_cols=207 Identities=11% Similarity=0.044 Sum_probs=137.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 282 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~------------ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-S------------ 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-c------------
Confidence 4456666666777777777777777666532 2234444444455555555555555555544432 1
Q ss_pred HHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLT 440 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 440 (605)
.+...+..+...+...|++++|.+.++++...+..|+ ...+..+..++...|++++|..
T Consensus 103 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 103 --------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 1445566666667777777777777777766333443 3466677777777778888888
Q ss_pred HHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 441 YFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 441 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.++++... .| +...+..++..+...|++++|...++++. .+.+...+..++..+...|++++|...++++++..
T Consensus 163 ~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 163 YFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777622 23 36677778888888888888888887752 34567778888888899999999999999999999
Q ss_pred CCCCchHH
Q 007400 518 PQSSATHG 525 (605)
Q Consensus 518 p~~~~~~~ 525 (605)
|+++....
T Consensus 240 p~~~~~~~ 247 (252)
T 2ho1_A 240 PGSLEYQE 247 (252)
T ss_dssp TTSHHHHH
T ss_pred CCCHHHHH
Confidence 97766544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-13 Score=120.61 Aligned_cols=197 Identities=11% Similarity=0.026 Sum_probs=153.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILN 427 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~ 427 (605)
+...+..+...+...|++++|.+.|+.... +.+...+..+...+...|++++|...++++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 345566667777777777777777765432 225667777888888888888888888888874 34 5667888888
Q ss_pred HHhcc-CcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 007400 428 ACTHS-GLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 428 ~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 503 (605)
.+... |++++|...++++.. .+..|+ ...+..++.++...|++++|...++++. .+.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888873 234444 5677888888888899999888888752 234577888888889999999
Q ss_pred HHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 504 DMGRKVVDQLIDQNP-QSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++|...++++++..| ++...+..++.++...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999988 88888888888888999999999988887653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=125.75 Aligned_cols=197 Identities=12% Similarity=0.077 Sum_probs=154.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 007400 350 SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVIL 426 (605)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 426 (605)
.....+..+...+...|++++|...|+.+.. +.+...+..+...+...|++++|+..++++.+. .| +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 3445666777788888888888888887543 236678888899999999999999999999984 44 567899999
Q ss_pred HHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 504 (605)
..+...|++++|...++++.+. .+.+...+..++..+.+.|++++|...++++. .+.+...+..++..+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999833 23357788999999999999999999998862 3457888999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+|...++++++..|++..++..++.+|...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999998774
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-14 Score=140.00 Aligned_cols=207 Identities=8% Similarity=-0.012 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCL-NDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
+.+...+....... +.+...+..+...|...|++ ++|++.|++.. .+.+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433322 34556666666667777777 77777776543 1225678888888999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc--------CChH
Q 007400 411 VRSSVKPDKITLAVILNACTHS---------GLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA--------GCSD 472 (605)
Q Consensus 411 ~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~ 472 (605)
++ +.|+...+..+..++... |++++|...++++.. ..|+ ...+..+..+|... |+++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88 567878888899999998 999999999999883 3454 77888999999888 9999
Q ss_pred HHHHHHHhCC--CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 473 QLMNQLEKMP--YE---HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 473 ~A~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
+|++.|++.. .+ .+...|..++.+|...|++++|...|+++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998863 23 47889999999999999999999999999999999999999999999999999999875543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-12 Score=117.86 Aligned_cols=209 Identities=12% Similarity=0.030 Sum_probs=134.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 282 PVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 282 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
+..+..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 72 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------
Confidence 3455555666666666666666666655432 2223344444444444444444444444444332
Q ss_pred HHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH-GYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGL 439 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 439 (605)
+.+..++..++..+... |++++|...++++.+.+..|+ ...+..+..++...|++++|.
T Consensus 73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 12445566666777777 777777777777776333343 356777777777788888888
Q ss_pred HHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 440 TYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YE-HDSYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 440 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
..++++... .|+ ...+..++.++.+.|++++|...++++. .+ .+...+..+...+...|+.+.|..+++.+.+
T Consensus 134 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 134 AYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888777622 333 6677777888888888888888887752 23 5666777777788889999999999999998
Q ss_pred cCCCCCchHHHH
Q 007400 516 QNPQSSATHGLL 527 (605)
Q Consensus 516 ~~p~~~~~~~~l 527 (605)
..|+++.....+
T Consensus 211 ~~p~~~~~~~~l 222 (225)
T 2vq2_A 211 NFPYSEELQTVL 222 (225)
T ss_dssp HCTTCHHHHHHH
T ss_pred hCCCCHHHHHHh
Confidence 999777665443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=128.46 Aligned_cols=238 Identities=8% Similarity=-0.058 Sum_probs=168.5
Q ss_pred cCChHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHH
Q 007400 264 LGDMESASKLFNEMPEK-------NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHG 336 (605)
Q Consensus 264 ~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 336 (605)
.|++++|+..|+++.+. +..++..++..+...|++++|+..|+++.+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555666666655431 35567778888888888888888888887753 34567788888888888888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007400 337 KQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSV 415 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 415 (605)
...++.+.+.. +.+..++..+..+|...|++++|...|+.+.. .|+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88888888865 45677888888888899999999988887652 2344444444555567789999999998877742
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 007400 416 KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-----QEHHACLIELLAQAGCSDQLMNQLEKM-PYEHDSYL 489 (605)
Q Consensus 416 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~ 489 (605)
+++...+ .++..+...++.++|...++++. ...|+ ...+..++.+|.+.|++++|...+++. ...|+.
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADA---TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC---CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh---cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 3343344 36667777888888998888876 33332 467888899999999999999999886 333422
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 007400 490 WNALHGVCRIHGNIDMGRKVV 510 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~ 510 (605)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223355667778888887776
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=134.55 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--C-C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-ChHHHHH
Q 007400 255 TTMVSGYAKLGDMESASKLFNEMPE--K-N----PVSWTTLIAGYTRNGLGQKALELFTRMMIL----RIRP-NQHTFSS 322 (605)
Q Consensus 255 ~~li~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ 322 (605)
......+...|++++|...|++..+ | + ...+..+...+...|++++|+..+++.... +-.| ...++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3444445555555555555554432 1 1 123444555555555555555555554321 1111 1223344
Q ss_pred HHHHHhcccchHHHHHHHHHHH
Q 007400 323 CLCACASIVSLKHGKQVHGFLI 344 (605)
Q Consensus 323 ll~~~~~~~~~~~a~~~~~~~~ 344 (605)
+...+...|+++.|...+.++.
T Consensus 93 la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4444445555555555554443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=136.80 Aligned_cols=264 Identities=8% Similarity=0.003 Sum_probs=183.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHHhcccchHHHHHHHHHHHHc----C-CCCChhH
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPN-Q----HTFSSCLCACASIVSLKHGKQVHGFLIRT----N-FRSNTIV 354 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 354 (605)
+..+...+...|++++|+..|+++.+.+ |+ . ..+..+...+...|+++.|...++++.+. + .+....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566677777777777777776642 32 2 35566666677777777777777766543 1 1223455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC-------C-CCcchHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 007400 355 MSSLIDMYSKCGCLNDGRQVFDLTDN-------K-ENSMLWNTMISALTQHGY-----------------DEQAIRLFHD 409 (605)
Q Consensus 355 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~ 409 (605)
+..+...|...|++++|...|+.... . ....++..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 66777777788888888777765331 1 123467777778888888 8888888877
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 410 MVRS----SVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 410 m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
..+. +-.| ...++..+...+...|++++|...+++......-.++ ...+..+..+|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 1112 1247777888888899999999998887632211111 23778888889999999999988876
Q ss_pred CC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 481 MP----YEH----DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 481 ~~----~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
.. ... ...++..++..+...|++++|...++++++..+.. ..++..++.+|...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 52 111 14567788889999999999999999999874432 34788899999999999999999988
Q ss_pred HHhC
Q 007400 547 INER 550 (605)
Q Consensus 547 ~~~~ 550 (605)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-11 Score=121.62 Aligned_cols=220 Identities=6% Similarity=-0.029 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 299 QKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGK-QVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDL 377 (605)
Q Consensus 299 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 377 (605)
+.+..+|++.+.. ++-+...|...+.-+...|+.+.|. .+++.+.... +.+...+...+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456677777664 3445666666677777778888886 8888888754 56667777888888888999999988886
Q ss_pred cCCC------------CC------------cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-
Q 007400 378 TDNK------------EN------------SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHS- 432 (605)
Q Consensus 378 ~~~~------------~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~- 432 (605)
+... |+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 5431 32 2367888888888899999999999998851112334444433333333
Q ss_pred CcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHH
Q 007400 433 GLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH----DSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 433 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
++.+.|..+|+...+.. .-+...+...++.....|+.+.|..+|++.. ..| ....|..++..-...|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55899999999998553 3345667788888889999999999999863 223 3467888888889999999999
Q ss_pred HHHHHHHhcCCCCCc
Q 007400 508 KVVDQLIDQNPQSSA 522 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~ 522 (605)
.+.+++.+..|+++.
T Consensus 562 ~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhCCCCcH
Confidence 999999999996653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-13 Score=130.94 Aligned_cols=303 Identities=11% Similarity=0.001 Sum_probs=190.5
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 007400 185 EFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGY 261 (605)
Q Consensus 185 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 261 (605)
...+......+...|++++|...++++.+..+... ..++..+..+|...|++++|...+++..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------- 74 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------- 74 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------------
Confidence 33444555556666677777777766666543211 2456667777777788887776665432
Q ss_pred HhcCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhcccc--
Q 007400 262 AKLGDMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTRMMILRI-RPN----QHTFSSCLCACASIVS-- 332 (605)
Q Consensus 262 ~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~-- 332 (605)
.+......+ ...++..+...+...|++++|+..+++...... .++ ..++..+...+...|+
T Consensus 75 ----------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 75 ----------TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 333333221 244677778888888888888888887765210 011 2345555566666666
Q ss_pred ------------------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-CcchHHHHHHH
Q 007400 333 ------------------LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSMLWNTMISA 393 (605)
Q Consensus 333 ------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~ 393 (605)
++.|...+....+ ++......+ ...++..+...
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~ 196 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGNT 196 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHH
Confidence 5555555444332 111111111 12356666677
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHH
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSV-KPD----KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIEL 464 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 464 (605)
+...|++++|...+++..+... .++ ..++..+..++...|++++|...+++......-.++ ..++..+...
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 7777777777777777654210 112 136777777888888888888888877632111111 4567788888
Q ss_pred HHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCchHHHHHHH
Q 007400 465 LAQAGCSDQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP------QSSATHGLLSSI 530 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~ 530 (605)
|...|++++|...+++.. ..++ ..++..++..+...|++++|...++++++..+ ....++..++.+
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 356 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDL 356 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 888899988888887652 1122 55777889999999999999999999998732 234577788999
Q ss_pred HHhcCCchH
Q 007400 531 YSALGKGRL 539 (605)
Q Consensus 531 ~~~~g~~~~ 539 (605)
+...|+...
T Consensus 357 ~~~~g~~~~ 365 (406)
T 3sf4_A 357 QMVLGLSYS 365 (406)
T ss_dssp HHHHHTTSC
T ss_pred HHHhhHhHH
Confidence 988887643
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-13 Score=128.38 Aligned_cols=265 Identities=9% Similarity=0.009 Sum_probs=189.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhcccchHHHHHHHHHHHHc----CC-CCChhHH
Q 007400 285 WTTLIAGYTRNGLGQKALELFTRMMILRIRPN----QHTFSSCLCACASIVSLKHGKQVHGFLIRT----NF-RSNTIVM 355 (605)
Q Consensus 285 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 355 (605)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...++++.+. +. +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566777777888877777777642 112 245666677777777888777777766542 11 1224566
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC----CCC----cchHHHHHHHHHHcCC--------------------HHHHHHHH
Q 007400 356 SSLIDMYSKCGCLNDGRQVFDLTDN----KEN----SMLWNTMISALTQHGY--------------------DEQAIRLF 407 (605)
Q Consensus 356 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 407 (605)
..+...|...|++++|...++.... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777888888888888888775431 112 2367777888888888 88888888
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 007400 408 HDMVRS----SVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQL 478 (605)
Q Consensus 408 ~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 478 (605)
++.... +..|. ..++..+...+...|++++|...++++.....-.++ ..++..++..+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876542 11121 247778888899999999999999988632111111 347888899999999999999998
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCchHHHHHH
Q 007400 479 EKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 479 ~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
++.. ..++ ..++..++..+...|++++|...++++++..|.. ..++..++.+|...|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 8752 1122 4567788899999999999999999999874433 347889999999999999999999
Q ss_pred HHHHhC
Q 007400 545 QLINER 550 (605)
Q Consensus 545 ~~~~~~ 550 (605)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-13 Score=138.31 Aligned_cols=162 Identities=13% Similarity=0.128 Sum_probs=145.0
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHH
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHAC 460 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 460 (605)
+..+|+.+...+.+.|++++|++.|++.++ +.|+ ..++..+..+|.+.|++++|+..|+++. .+.|+ ...+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---~l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 456788899999999999999999999998 5675 5689999999999999999999999998 44676 788999
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 461 LIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
+..+|.+.|++++|++.|++.. .+.+..+|..++.++...|++++|++.|+++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998862 34568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007400 539 LVEKVRQLINE 549 (605)
Q Consensus 539 ~a~~~~~~~~~ 549 (605)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-12 Score=126.06 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=175.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 007400 190 GILTICVKLEELKLTRQVHGQVLVTGFLSNV----VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLG 265 (605)
Q Consensus 190 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 265 (605)
.+...+...|++++|...++++++.... +. .++..+..+|...|++++|...+++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------ 113 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL------------------ 113 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------
Confidence 3444555666666666666666665432 22 356667777777788877776665432
Q ss_pred ChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----C-CCCChHHHHHHHHHHhcccc------
Q 007400 266 DMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTRMMIL----R-IRPNQHTFSSCLCACASIVS------ 332 (605)
Q Consensus 266 ~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~~~~ll~~~~~~~~------ 332 (605)
++....... ...++..+...|...|++++|+..+++.... + ......++..+...+...|+
T Consensus 114 ------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 114 ------TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ------HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccccc
Confidence 333333221 3446777788888888888888888876652 1 01112345555556666666
Q ss_pred -----------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-CcchHHHHHHHHHHcCCH
Q 007400 333 -----------LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSMLWNTMISALTQHGYD 400 (605)
Q Consensus 333 -----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 400 (605)
++.|...+.+..+ ++......+ ...++..+...+...|++
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLK----------------------------LMRDLGDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH----------------------------HHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHH----------------------------HHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 4444444443322 111111111 223566677777788888
Q ss_pred HHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC----CHHHHHHHHHHHHhcCCh
Q 007400 401 EQAIRLFHDMVRSSVK-PD----KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP----NQEHHACLIELLAQAGCS 471 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~ 471 (605)
++|...+++..+.... ++ ..++..+..++...|++++|...++++.....-.. ...++..+..+|...|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 8888888777652100 11 13677788888888899988888887763221111 145778888889999999
Q ss_pred HHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 472 ~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
++|...+++.. ..++ ..++..++.++...|++++|...+++++++.+
T Consensus 320 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 99998888752 0112 44677888999999999999999999999876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=111.43 Aligned_cols=165 Identities=11% Similarity=0.043 Sum_probs=135.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILN 427 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~ 427 (605)
+..+|..+...|...|++++|++.|++.. .+.+..+|..+...|...|++++|...+.+.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 45677777888888888888888887643 2226678888888899999999999999988874 44 4567777888
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 504 (605)
.+...++++.|...+.++.. ..|+ ...+..+..+|.+.|++++|++.+++.. .+.+..+|..++.++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 88889999999999998872 3444 7788889999999999999999998862 3467889999999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 007400 505 MGRKVVDQLIDQNPQS 520 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~ 520 (605)
+|+..|+++++.+|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999999964
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.2e-10 Score=114.42 Aligned_cols=216 Identities=8% Similarity=-0.046 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGR-QVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
+.+..+|++++... +....+|...+..+...|+.++|. ++|+.... +.+...|...+......|++++|..+|+++
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567788888764 668889999999999999999996 99986542 225556777888889999999999999998
Q ss_pred HHCC---------CCCC------------HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcC
Q 007400 411 VRSS---------VKPD------------KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG 469 (605)
Q Consensus 411 ~~~~---------~~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 469 (605)
+... -.|+ ...|...+....+.|+.+.|..+|.++.+.. ..+....|...+..-.+.|
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhC
Confidence 8631 0142 2367777777778899999999999998330 1122445544444444554
Q ss_pred -ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHhcCCchHHHHH
Q 007400 470 -CSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ---SSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 470 -~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
+.+.|..+|+... .+.+...|..++......|+.+.|+.+|++++...|+ ....|..++..-...|+.+.+..+
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5899999998762 4467788888888888899999999999999999873 446788888889999999999999
Q ss_pred HHHHHhCC
Q 007400 544 RQLINERQ 551 (605)
Q Consensus 544 ~~~~~~~~ 551 (605)
.+++.+.-
T Consensus 564 ~~R~~~~~ 571 (679)
T 4e6h_A 564 EKRFFEKF 571 (679)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99997664
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-11 Score=116.68 Aligned_cols=216 Identities=7% Similarity=0.035 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-------ccch-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007400 299 QKALELFTRMMILRIRPNQHTFSSCLCACAS-------IVSL-------KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK 364 (605)
Q Consensus 299 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (605)
++|+..|++..... +.+...|..++..+.. .|++ ++|..+++++++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666655531 2333444444444332 2443 4555555555542112333445555555555
Q ss_pred cCChHHHHHHHHhcCC-CCC-cc-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCcHHHHHH
Q 007400 365 CGCLNDGRQVFDLTDN-KEN-SM-LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT-HSGLVQEGLT 440 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~-~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~ 440 (605)
.|++++|.++|++... .|+ .. .|..++..+.+.|++++|..+|++.++.+ +++...|...+.... ..|+++.|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555554322 121 22 44455555555555555555555555421 112223322222211 1345555555
Q ss_pred HHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007400 441 YFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP----YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQL 513 (605)
Q Consensus 441 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (605)
+|+++.+. .| +...+..++..+.+.|++++|..+|++.. .+| ....|..++..+...|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554421 12 23444444444445555555555554431 122 2334444444444455555555555555
Q ss_pred HhcCCC
Q 007400 514 IDQNPQ 519 (605)
Q Consensus 514 ~~~~p~ 519 (605)
++..|+
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 555444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-12 Score=125.85 Aligned_cols=224 Identities=9% Similarity=-0.053 Sum_probs=134.1
Q ss_pred HHHhcccchHHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcC----CCCC-----cchHHHH
Q 007400 325 CACASIVSLKHGKQVHGFLIRT----NFRS-NTIVMSSLIDMYSKCGCLNDGRQVFDLTD----NKEN-----SMLWNTM 390 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l 390 (605)
..+...|++++|...++++.+. +-++ ...++..+...|...|+++.|...++... ..++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344555555555555555442 1011 12345555666666666666666555322 1111 2356667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCcHHHHHHHHHHchHh---hCCCCC-HHHHHHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSV-KPDK----ITLAVILNACTHSGLVQEGLTYFESMTHD---LGIIPN-QEHHACL 461 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~l 461 (605)
...|...|++++|+..+++.++... .++. .++..+..+|...|++++|...+++...- .+..|. ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7777777777777777777664210 0111 36677777777788888888877777631 022133 5567777
Q ss_pred HHHHHhcCChHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 462 IELLAQAGCSDQLMNQLEKMP----Y--EHD-SYLWNALHGVCRIHGN---IDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+.+|.+.|++++|...+++.. . .+. ...+..+...+...|+ +++|+.++++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 778888888888877777641 0 111 2224556667777777 67777777665 33333455677788888
Q ss_pred HhcCCchHHHHHHHHHHh
Q 007400 532 SALGKGRLVEKVRQLINE 549 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~ 549 (605)
...|++++|...+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888877754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-11 Score=114.08 Aligned_cols=214 Identities=8% Similarity=0.007 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCCh-------HHHHHHHHhcCC--CC-CcchHHHHHHHHHH
Q 007400 334 KHGKQVHGFLIRTNFRSNTIVMSSLIDMYSK-------CGCL-------NDGRQVFDLTDN--KE-NSMLWNTMISALTQ 396 (605)
Q Consensus 334 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~ 396 (605)
+.|..+|+++++.. +.+...|..++..+.. .|++ ++|..+|++... .| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888865 6677888888877763 5886 899999987543 34 45689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHH-hcCChH
Q 007400 397 HGYDEQAIRLFHDMVRSSVKPD-KI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLA-QAGCSD 472 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 472 (605)
.|++++|..+|+++++ +.|+ .. .|..++..+.+.|++++|..+|+++. ...|+ ...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR---EDARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH---TSTTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 5664 43 78889999999999999999999998 33343 555554444322 369999
Q ss_pred HHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCchHHHHHHHH
Q 007400 473 QLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ---NPQ-SSATHGLLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 473 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 546 (605)
+|..+|++.. .+.+...|..++..+...|++++|+.+|+++++. .|+ +...|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998862 3457888999999999999999999999999996 443 566888899999999999999999999
Q ss_pred HHhCCCc
Q 007400 547 INERQFK 553 (605)
Q Consensus 547 ~~~~~~~ 553 (605)
+.+....
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 8776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-12 Score=113.55 Aligned_cols=187 Identities=8% Similarity=-0.099 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcC--CC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTD--NK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILN 427 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~ 427 (605)
+..+......+...|++++|...|+... .+ ++...+..+..++...|++++|+..+++..+ ..|+ ...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444444555555555555555554322 11 2344444444455555555555555555554 2332 234444555
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCC-H-------HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPN-Q-------EHHACLIELLAQAGCSDQLMNQLEKM-PYEHD---SYLWNALHG 495 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~ 495 (605)
++...|++++|...+++..+. .|+ . ..+..+...+...|++++|++.+++. ...|+ ...|..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 555555555555555554421 222 2 23444444444444444444444443 12222 233333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.. .+...++++..+.+.+...+. .......|.+++|+..+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3322 222333444444332322221 11222334448999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.4e-12 Score=120.54 Aligned_cols=275 Identities=10% Similarity=-0.001 Sum_probs=154.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChH
Q 007400 192 LTICVKLEELKLTRQVHGQVLVTGFLSN---VVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDME 268 (605)
Q Consensus 192 l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 268 (605)
...+...|++++|...++++.+..+... ..++..+...|...|++++|.+.+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL--------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------
Confidence 3444555666666666666555532211 2455566667777777777776655432
Q ss_pred HHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhcccc---------
Q 007400 269 SASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKALELFTRMMILRI-RPN----QHTFSSCLCACASIVS--------- 332 (605)
Q Consensus 269 ~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------- 332 (605)
.+......+ ...++..+...+...|++++|+..+++..+... .++ ..++..+...+...|+
T Consensus 71 ---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (338)
T 3ro2_A 71 ---TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQD 147 (338)
T ss_dssp ---HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC-
T ss_pred ---HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhh
Confidence 222222111 234566677777777888888777777654210 111 2245555555666666
Q ss_pred -----------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-CcchHHHHHHHHHHcCCH
Q 007400 333 -----------LKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE-NSMLWNTMISALTQHGYD 400 (605)
Q Consensus 333 -----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 400 (605)
++.|...+++..+. +......+ ...++..+...+...|++
T Consensus 148 ~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 199 (338)
T 3ro2_A 148 TGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNF 199 (338)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCH
Confidence 55555554443321 11111110 123455555566666666
Q ss_pred HHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCCh
Q 007400 401 EQAIRLFHDMVRSSV-KPD----KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCS 471 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~ 471 (605)
++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 666666666553210 011 125666666777777777777777766522111111 45667777778888888
Q ss_pred HHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 472 ~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
++|...+++.. ...+ ..++..++..+...|++++|...++++++..+
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 88877776641 0111 44677788899999999999999999998865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=6.3e-13 Score=126.16 Aligned_cols=237 Identities=13% Similarity=0.091 Sum_probs=120.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHc------C
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMIL-------RIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRT------N 347 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 347 (605)
+..++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778888888888888888888887762 12223345556666666677777777766666543 1
Q ss_pred C-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-H
Q 007400 348 F-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRS------SVKPD-K 419 (605)
Q Consensus 348 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p~-~ 419 (605)
. +....++..+...| ...|++++|...++++.+. +-.|+ .
T Consensus 106 ~~~~~~~~~~~l~~~~--------------------------------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLY--------------------------------GKRGKYKEAEPLCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp TCHHHHHHHHHHHHHH--------------------------------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CChHHHHHHHHHHHHH--------------------------------HHcCcHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 1 11223344444444 4445555554444444432 11121 2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhh-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC----------C
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDL-----GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP----------Y 483 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~ 483 (605)
.++..+...+...|++++|..+++++.... +..|. ..++..+..+|...|++++|.+.++++. .
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344455555555555555555555554210 11222 3345555555555555555555554431 0
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 484 EHD-------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 484 ~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.+. ...+..+...+...+.+.++...++++....|....++..++.+|.+.|++++|..++++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 000 111222223334445566666667777766776777777777777777777777777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-12 Score=126.02 Aligned_cols=179 Identities=12% Similarity=-0.046 Sum_probs=157.5
Q ss_pred hHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 368 LNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYD-EQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 368 ~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
++++...++..... .+...+..+...+...|++ ++|+..|++.++ ..|+ ...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666654322 3667888999999999999 999999999998 4564 6799999999999999999999999
Q ss_pred HchHhhCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc--------CCHH
Q 007400 444 SMTHDLGIIPNQEHHACLIELLAQA---------GCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH--------GNID 504 (605)
Q Consensus 444 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------g~~~ 504 (605)
++. ...|+...+..+..+|... |++++|++.+++.. .+.+...|..++.+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 5678888999999999999 99999999999862 345788999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 505 MGRKVVDQLIDQNP---QSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 505 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
+|+..|+++++++| +++..+..++.+|...|++++|...|++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999987753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-10 Score=111.50 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=177.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCChH----HHHHHHHHHhcccchHHHHHHHHHHHHcCCC-CC----hhHHH
Q 007400 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPNQH----TFSSCLCACASIVSLKHGKQVHGFLIRTNFR-SN----TIVMS 356 (605)
Q Consensus 286 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 356 (605)
......+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+.+..+.... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667888888888888877643222221 3445556677788888888888777653211 11 12345
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-------C--C-CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHH
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTDN-------K--E-NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK--P--DKITL 422 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~~-------~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~ 422 (605)
.+...+...|++++|...++.... . | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677778888888888888875321 1 1 1234566777888899999999999888763211 1 12467
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHH----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHHHH
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHA----CLIELLAQAGCSDQLMNQLEKMP-YEHD-----SYLWN 491 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~ 491 (605)
..+...+...|++++|...+++.......... ..... ..+..+...|++++|...+++.. ..+. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 77888888899999999999887632111111 11111 23345778999999999998863 1111 23456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.++.++...|++++|...++++++..+.. ...+..++.++...|++++|...+++..+
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77788888999999999999988763321 13667788999999999999998888754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=106.78 Aligned_cols=161 Identities=16% Similarity=0.081 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLA 466 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 466 (605)
|..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++... .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444455555555555555555554421 123445555555566666666666666665521 1123455566666666
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007400 467 QAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
..|++++|.+.++++. .+.+...+..++..+...|++++|...++++++..|+++..+..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666541 23466777778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 007400 545 QLINER 550 (605)
Q Consensus 545 ~~~~~~ 550 (605)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.4e-11 Score=116.53 Aligned_cols=204 Identities=9% Similarity=-0.017 Sum_probs=133.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRI-RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
.++..+...|...|++++|+..+++..+.-- .++.. +....+++.+..+
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------------------------~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN------------------------------IRLLQCHSLFATN 193 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch------------------------------HHHHHHHHHHHHH
Confidence 4566777777777888777777777654200 01100 0011233344444
Q ss_pred HHhcCChHHHHHHHHhcCC----CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 007400 362 YSKCGCLNDGRQVFDLTDN----KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRS----SVKPD-KITLAVILNA 428 (605)
Q Consensus 362 ~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~ 428 (605)
|...|++++|...|+.... .++ ..++..+...|...|++++|+..+++..+. +..|+ ..++..+..+
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 4445555555444443220 011 235677778888888888888888887762 22233 4578888888
Q ss_pred HhccCcHHHHHHHHHHchHhhCC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGI--IPN-QEHHACLIELLAQAGC---SDQLMNQLEKMPYEHD-SYLWNALHGVCRIHG 501 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g 501 (605)
+...|++++|...+++...-..- .|. ...+..+...|...|+ +++|+.++++....++ ...+..++..|...|
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999998887632111 122 3345678888888998 8899999998863333 346677899999999
Q ss_pred CHHHHHHHHHHHHhc
Q 007400 502 NIDMGRKVVDQLIDQ 516 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~ 516 (605)
++++|...++++++.
T Consensus 354 ~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 354 NFQKASAYFLKVEQV 368 (383)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999886
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=9.8e-13 Score=124.85 Aligned_cols=238 Identities=11% Similarity=0.091 Sum_probs=151.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC--------C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CC
Q 007400 251 VLTWTTMVSGYAKLGDMESASKLFNEMPE--------K---NPVSWTTLIAGYTRNGLGQKALELFTRMMIL------RI 313 (605)
Q Consensus 251 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------g~ 313 (605)
..++..+...+...|++++|..+++++.+ . ...++..+...+...|++++|+..+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45688888999999999999999998764 2 3457888999999999999999999998763 22
Q ss_pred -CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcch
Q 007400 314 -RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTN------FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSML 386 (605)
Q Consensus 314 -~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 386 (605)
+.....+..+...+...|++++|...+.++.+.. ..+. ...+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD-------------------------------VAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH-------------------------------HHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH-------------------------------HHHH
Confidence 2234577888889999999999999998887531 1111 1233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhh------CCCC
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRS------SVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDL------GIIP 453 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p 453 (605)
+..+...+...|++++|+.+++++.+. +..|+ ..++..+..++...|++++|..+++++.... ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444555555566666666666555542 11222 2356666666667777777777776665210 1111
Q ss_pred C-------HHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 454 N-------QEHHACLIELLAQAGCSDQLMNQLEKMP-Y-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 454 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
. ...+..+...+...+.+.++...+++.. . +.+..++..++.+|...|++++|...|++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1122223333444555555666666553 1 234567888999999999999999999999998774
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-11 Score=106.74 Aligned_cols=206 Identities=6% Similarity=0.053 Sum_probs=163.7
Q ss_pred CChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-CcchHHHHHH
Q 007400 315 PNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE-NSMLWNTMIS 392 (605)
Q Consensus 315 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~ 392 (605)
.|...+......+...|++++|...|+.+++...+++...+..+..++...|++++|+..|+.... .| +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888899999999999999999999987447777888899999999999999999997552 23 5678899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC---HHHHHHH
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKPD-K-------ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN---QEHHACL 461 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 461 (605)
.+...|++++|+..+++.++ ..|+ . ..+..+...+...|++++|+..|+++. ...|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 99999999999999999998 4554 4 457788888999999999999999998 55676 5678888
Q ss_pred HHHHHhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 462 IELLAQAGCS--DQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 462 ~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
..+|...|+. +++..+ . ..+...+... .....+.+++|+..+++++++.|++..+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888776653 232222 1 2334444333 2345577999999999999999999888887776643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-10 Score=111.33 Aligned_cols=228 Identities=8% Similarity=-0.020 Sum_probs=107.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCC-C-----ChhHH
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRI-RPN----QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFR-S-----NTIVM 355 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~ 355 (605)
.....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+.++.+.... + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777777665311 122 234555556666666666666666665542100 0 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC----CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007400 356 SSLIDMYSKCGCLNDGRQVFDLTDN----KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVR-----SSVKPDKITL 422 (605)
Q Consensus 356 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 422 (605)
+.+..+|...|++++|.+.|+.... .++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 4455555555555555555543221 011 12344455555555555555555555544 21 1113345
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHH
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGI--IPN-QEHHACLIELLAQAGC---SDQLMNQLEKMPYEHD-SYLWNALHG 495 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~ 495 (605)
..+..++.+.|++++|...+++...-..- .|. ...+..+...+...|+ +.+|+..+++....++ ...+..++.
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555555555555555555555422111 111 2233444444444444 4455555544331111 123334444
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 007400 496 VCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~ 515 (605)
.|...|++++|...|+++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 45555555555555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-10 Score=106.67 Aligned_cols=206 Identities=8% Similarity=-0.038 Sum_probs=128.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSSV-KPD-KITLA 423 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~ 423 (605)
+...+-.+...+.+.|++++|...|+.+... |+ ...+..+..++...|++++|+..|++.++... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445555566666666666666666654421 22 34555566666666666666666666666311 111 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 007400 424 VILNACTH--------SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALH 494 (605)
Q Consensus 424 ~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 494 (605)
.+..++.. .|++++|...|+++... .|+ ......+.......+.. ...+..++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556655 66666666666666632 232 11111111110000000 11246678
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCcCCCceeEE
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSAL----------GKGRLVEKVRQLINERQFKKEQAISWI 561 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~s~~ 561 (605)
..+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 899999999999999999999999754 4788999999977 899999999999876432
Q ss_pred EECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhC
Q 007400 562 EIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGED 597 (605)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 597 (605)
.+|...+....+.++...++..
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777777766543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-10 Score=98.76 Aligned_cols=167 Identities=9% Similarity=0.007 Sum_probs=141.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007400 353 IVMSSLIDMYSKCGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNAC 429 (605)
Q Consensus 353 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~ 429 (605)
..+..+...+...|++++|...|+.+... .+...+..+...+...|++++|...++++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 45667788899999999999999987643 36677888999999999999999999999884 44 567888899999
Q ss_pred hccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 430 THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 430 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
...|++++|...++++... .+.+...+..++..+...|++++|.+.++++. .+.+..++..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999833 23357788899999999999999999998862 3456888999999999999999999
Q ss_pred HHHHHHHhcCCCCCch
Q 007400 508 KVVDQLIDQNPQSSAT 523 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~ 523 (605)
..++++++..|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998876543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-08 Score=99.51 Aligned_cols=267 Identities=10% Similarity=-0.061 Sum_probs=151.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-C----hhHHHHH
Q 007400 156 MIIGYAKSGAVEEGLKFYKVLRRFSISCNEF----SFAGILTICVKLEELKLTRQVHGQVLVTGFLS-N----VVISSSI 226 (605)
Q Consensus 156 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 226 (605)
....+...|++++|...+++........+.. ++..+...+...|+++.|...+++........ + ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445667788888888888876643222221 34555566677788888888887776542211 1 2234556
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHH
Q 007400 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK----NPVSWTTLIAGYTRNGLGQKAL 302 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~ 302 (605)
...+...|++++|...+++.. ++......+ ....+..+...+...|++++|.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAF------------------------QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH------------------------HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH------------------------HHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 677777888888876665432 333333322 2235666778888889999999
Q ss_pred HHHHHHHHCCCC--C--ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCChHHHH
Q 007400 303 ELFTRMMILRIR--P--NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNT-IVMS-----SLIDMYSKCGCLNDGR 372 (605)
Q Consensus 303 ~~~~~m~~~g~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~ 372 (605)
..+++....... + ...++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 998887753211 1 1235566667777788888888888777653211111 1111 2233456677777777
Q ss_pred HHHHhcCCC-CC-----cchHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHH
Q 007400 373 QVFDLTDNK-EN-----SMLWNTMISALTQHGYDEQAIRLFHDMVRS----SVKPDK-ITLAVILNACTHSGLVQEGLTY 441 (605)
Q Consensus 373 ~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 441 (605)
..++..... +. ...+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 777665432 11 112445555666666666666666655431 111111 1333444445555555555555
Q ss_pred HHHch
Q 007400 442 FESMT 446 (605)
Q Consensus 442 ~~~~~ 446 (605)
+++..
T Consensus 316 l~~al 320 (373)
T 1hz4_A 316 LLDAL 320 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=122.35 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=130.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007400 351 NTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILN 427 (605)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~ 427 (605)
+...++.|..+|.+.|++++|++.|++.. .+.+..+|..+..+|.+.|++++|+..|++.++ +.|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45667777777888888888888777643 222567888888888899999999999998888 5665 568888888
Q ss_pred HHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007400 428 ACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNID 504 (605)
Q Consensus 428 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 504 (605)
++...|++++|++.|+++. .+.|+ ...+..+..+|.+.|++++|++.|++.. .+.+...+..++.++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl---~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAI---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999888 34565 7788889999999999999999988762 2456788888999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 007400 505 MGRKVVDQLIDQNP 518 (605)
Q Consensus 505 ~A~~~~~~~~~~~p 518 (605)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.19 E-value=9.5e-10 Score=98.51 Aligned_cols=182 Identities=12% Similarity=0.070 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK----ITL 422 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~ 422 (605)
...+..+...+.+.|++++|+..|+.+.. .|+ ...+..++.++...|++++|+..|+++++. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34455566777888888888888887653 122 235677777888888888888888888773 4432 244
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 007400 423 AVILNACTH------------------SGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEKMPY 483 (605)
Q Consensus 423 ~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 483 (605)
..+..++.. .|++++|...|+++. ...|+. .....+... +......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l---~~~P~~~~a~~a~~~l----~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLV---RGYPNSQYTTDATKRL----VFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH---TTCTTCTTHHHHHHHH----HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHH---HHCcCChhHHHHHHHH----HHHHHHH--------
Confidence 445555543 456777777777766 233432 121111110 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS---ATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
......++..+...|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123567788899999999999999999999876 57889999999999999999999999876543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=108.64 Aligned_cols=201 Identities=8% Similarity=-0.048 Sum_probs=135.3
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-------CCC-CcchHHHHHHHHHHcCCHHHH
Q 007400 332 SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD-------NKE-NSMLWNTMISALTQHGYDEQA 403 (605)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~a 403 (605)
++++|...+.++ ...|...|++++|.+.|+... .++ ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666665554 334566677777776666432 111 135677888888888899988
Q ss_pred HHHHHHHHHCCCC-CC----HHHHHHHHHHHhcc-CcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHH
Q 007400 404 IRLFHDMVRSSVK-PD----KITLAVILNACTHS-GLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 404 ~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 473 (605)
+..+++.++.... .+ ..++..+..+|... |++++|+..|++...-..-..+ ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8888887752100 01 24788888889886 9999999999988732111111 3568889999999999999
Q ss_pred HHHHHHhCC-CCC---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--hcCCc
Q 007400 474 LMNQLEKMP-YEH---DS-----YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT-----HGLLSSIYS--ALGKG 537 (605)
Q Consensus 474 A~~~~~~~~-~~~---~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 537 (605)
|+..+++.. ..| .. ..+..++.++...|++++|+..|++++++.|..... +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999998752 112 21 256778888999999999999999999998876543 345566664 45678
Q ss_pred hHHHHHHHHH
Q 007400 538 RLVEKVRQLI 547 (605)
Q Consensus 538 ~~a~~~~~~~ 547 (605)
++|+..|+.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888877644
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-09 Score=103.74 Aligned_cols=218 Identities=8% Similarity=0.029 Sum_probs=152.3
Q ss_pred HHHhcCChHHHHHHHhhCCC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--C---CC-ChHHHHHHH
Q 007400 260 GYAKLGDMESASKLFNEMPE-----K----NPVSWTTLIAGYTRNGLGQKALELFTRMMILR--I---RP-NQHTFSSCL 324 (605)
Q Consensus 260 ~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~---~p-~~~~~~~ll 324 (605)
.+...|++++|...|++..+ + ...++..+...|...|+++.|+..+++..+.- . .+ ...++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455666666666555432 1 23467778888888888888888888776521 1 11 234666777
Q ss_pred HHHhcccchHHHHHHHHHHHHc----CCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----C-C-CcchHHHHHH
Q 007400 325 CACASIVSLKHGKQVHGFLIRT----NFR-SNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-----K-E-NSMLWNTMIS 392 (605)
Q Consensus 325 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~-~~~~~~~l~~ 392 (605)
.++...|+++.|...+.++.+. +.+ ....++..+..+|...|++++|.+.|++... . | ...++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8888888888888888877653 111 1234677788889999999999988886542 2 1 3456778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHhccCc---HHHHHHHHHHchHhhCCCCC-HHHHHHHHHH
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSV---KPD-KITLAVILNACTHSGL---VQEGLTYFESMTHDLGIIPN-QEHHACLIEL 464 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 464 (605)
.+...|++++|...+++..+... .|. ...+..+...+...++ +.+|+.++++.. ..|+ ...+..+...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~----~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN----LHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC----ChhHHHHHHHHHHHH
Confidence 99999999999999999886421 222 2356666677778888 777877777643 3333 5577789999
Q ss_pred HHhcCChHHHHHHHHhC
Q 007400 465 LAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~ 481 (605)
|...|++++|...+++.
T Consensus 346 y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999999999998864
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-11 Score=101.02 Aligned_cols=138 Identities=13% Similarity=0.032 Sum_probs=93.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCCh
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCS 471 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 471 (605)
+...|++++|+..+++... ..|+. ..+..+...|...|++++|+..|+++. .+.|+ ..++..+..+|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---NVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCch
Confidence 3445666666666666655 23432 355566666777777777777777766 23444 56677777777777777
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKV-VDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 472 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
++|+..|++.. .+.+..+|..++..+...|++++|... ++++++++|+++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777776642 234577788888888888887765554 588888888888888888888877775
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8e-11 Score=97.79 Aligned_cols=122 Identities=11% Similarity=-0.016 Sum_probs=103.5
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
|...+...|++++|+..++... ...|+ ...+..+..+|.+.|++++|++.|++.. .+.+..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556777899999999999887 45565 4566789999999999999999999862 3467899999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHHh
Q 007400 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKV-RQLINE 549 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~ 549 (605)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++++.+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 577765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-10 Score=105.75 Aligned_cols=222 Identities=11% Similarity=0.110 Sum_probs=150.3
Q ss_pred hcccchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---------CC-CcchHHHH
Q 007400 328 ASIVSLKHGKQVHGFLIRT-------NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN---------KE-NSMLWNTM 390 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~~l 390 (605)
...|+++.|...+++..+. ..+....++..+...|...|++++|...|+.... .| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 2233456778888999999999999988875431 11 34567888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhh-----CCCCC-HHH
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRS------SVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDL-----GIIPN-QEH 457 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 457 (605)
...+...|++++|...+++.... .-.|+ ..++..+...+...|++++|..+++++.... +..|. ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999988763 11232 4578888888999999999999999887321 11333 567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKMP----------YEH-DSYLWNALHGVCRIHG------NIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~ 520 (605)
+..+..+|...|++++|...+++.. ..+ ....|..+...+...+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888899999999999998887652 111 2223333333333322 2334444444333345556
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 521 SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999998865
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=101.54 Aligned_cols=174 Identities=12% Similarity=0.052 Sum_probs=140.3
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHh
Q 007400 370 DGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHD 448 (605)
Q Consensus 370 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 448 (605)
.....+...... +...+..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...++++.
T Consensus 104 ~l~~~l~~~lp~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-- 178 (287)
T 3qou_A 104 AIRALLDXVLPR-EEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP-- 178 (287)
T ss_dssp HHHHHHHHHSCC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC--
T ss_pred HHHHHHHHHcCC-chhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc--
Confidence 334444443322 556677788889999999999999999998 466 45688999999999999999999999988
Q ss_pred hCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--Cch
Q 007400 449 LGIIPNQEH-HACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS--SAT 523 (605)
Q Consensus 449 ~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 523 (605)
...|+... .......+.+.|+.++|...+++.. .+.+...+..++.++...|++++|+..|+++++.+|++ ...
T Consensus 179 -~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 179 -LQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp -GGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred -hhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 33566433 2333334677788888888887752 35678899999999999999999999999999999988 789
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 524 HGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 524 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+..++.++...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999887643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-09 Score=99.16 Aligned_cols=204 Identities=7% Similarity=-0.054 Sum_probs=146.0
Q ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C---C-cc
Q 007400 314 RPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSN---TIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-E---N-SM 385 (605)
Q Consensus 314 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~-~~ 385 (605)
+.+...+......+...|++++|...|+.+++.. +.+ ...+..+..+|.+.|++++|...|+..... | . ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3455677778888999999999999999999875 333 667888999999999999999999976531 2 2 34
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHH
Q 007400 386 LWNTMISALTQ--------HGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQE 456 (605)
Q Consensus 386 ~~~~l~~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 456 (605)
.+..+..++.. .|++++|+..|+++++. .|+.. ....+ ..+..+... -..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHH
Confidence 67778888888 99999999999999984 55432 22111 111111100 012
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP-YEH----DSYLWNALHGVCRIH----------GNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~ 521 (605)
.+..++.+|.+.|++++|+..|+++. ..| ....+..++.++... |++++|...|+++++..|+++
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 35567788888899999988887752 112 245677777777765 899999999999999999886
Q ss_pred c---hHHHHHHHHHhcCCchH
Q 007400 522 A---THGLLSSIYSALGKGRL 539 (605)
Q Consensus 522 ~---~~~~l~~~~~~~g~~~~ 539 (605)
. +...+..++.+.|++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 4 34455555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=6.6e-09 Score=95.04 Aligned_cols=175 Identities=11% Similarity=0.026 Sum_probs=99.6
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchH
Q 007400 371 GRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTH 447 (605)
Q Consensus 371 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 447 (605)
|+..|++... .++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~- 163 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT- 163 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 4555554432 2344444556666666677777777776665543212 33466666666777777777777777665
Q ss_pred hhCCCC-----CHHHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 007400 448 DLGIIP-----NQEHHACLIEL--LAQAG--CSDQLMNQLEKMP-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ- 516 (605)
Q Consensus 448 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 516 (605)
...| +..+...|+.+ ....| ++.+|..+|+++. ..|+......+..++...|++++|++.++.+.+.
T Consensus 164 --~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 --NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp --HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred --hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2344 23344444433 22233 6677777776652 2244222233333666677777777777766554
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 517 ---------NPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 517 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+|+++.++..++.+....|+ +|.+++.++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 36666666666666666665 666666666654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.8e-09 Score=93.42 Aligned_cols=173 Identities=8% Similarity=-0.013 Sum_probs=137.9
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHch
Q 007400 371 GRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSG----LVQEGLTYFESMT 446 (605)
Q Consensus 371 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 446 (605)
|.+.|+...+..++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 34444444434477788888888888899999999999988865 56777778888877 6 8999999999887
Q ss_pred HhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 007400 447 HDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHD----SYLWNALHGVCRI----HGNIDMGRKVVDQLI 514 (605)
Q Consensus 447 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 514 (605)
+.+ ++..+..|...|.. .+++++|+++|++.....+ +..+..|+..|.. .+++++|+..|+++.
T Consensus 81 -~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 -EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp -HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred -HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 322 46677788888877 7899999999988642333 7888889999988 889999999999999
Q ss_pred hcCCCCCchHHHHHHHHHhc-C-----CchHHHHHHHHHHhCCC
Q 007400 515 DQNPQSSATHGLLSSIYSAL-G-----KGRLVEKVRQLINERQF 552 (605)
Q Consensus 515 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 552 (605)
+. |.++..+..|+.+|... | ++++|...+++..+.|.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98 66888999999999865 3 89999999999887663
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.12 E-value=6.3e-09 Score=95.16 Aligned_cols=182 Identities=12% Similarity=0.100 Sum_probs=130.6
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC---CCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007400 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLT-DNK---ENSMLWNTMISALTQHGYDEQAIRLFHDMV 411 (605)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 411 (605)
+...+++..+.+ +++...+..+..++...|++++|++++... ... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 445555567778888888888888888875 322 245667778888999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--Hhc--cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007400 412 RSSVKP-----DKITLAVILNA--CTH--SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP 482 (605)
Q Consensus 412 ~~~~~p-----~~~~~~~l~~~--~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 482 (605)
+ ..| +..+...++.+ ... .+++.+|..+|+++. .-.|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~---~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELS---QTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH---TTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH---HhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 567 35566666655 333 338999999999987 334553333344448899999999999987642
Q ss_pred C------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 483 Y------------EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 483 ~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
. +.++.++..++......|+ +|.++++++.+..|+++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 3456677667666667787 899999999999998776443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.4e-10 Score=94.93 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 464 (605)
.+..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...++++... .|+......+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 455566677778888888888877766 345 3457777777788888888888888877632 3333333222212
Q ss_pred -HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchH
Q 007400 465 -LAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS--SATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 465 -~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 539 (605)
+...+...+|...+++.. .+.+...+..++.++...|++++|...|+++++.+|+. +..+..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122223334566666641 23568899999999999999999999999999999865 5589999999999999999
Q ss_pred HHHHHHHHHh
Q 007400 540 VEKVRQLINE 549 (605)
Q Consensus 540 a~~~~~~~~~ 549 (605)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=115.12 Aligned_cols=168 Identities=11% Similarity=-0.025 Sum_probs=97.4
Q ss_pred HhcCChHHHHHHHHhcC--------C--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 007400 363 SKCGCLNDGRQVFDLTD--------N--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTH 431 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~--------~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 431 (605)
...|++++|++.++... . +.+...+..+...+...|++++|+..|++.++ ..| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 45566666666665442 1 12344556666666666666666666666665 334 34466666666666
Q ss_pred cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007400 432 SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRK 508 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 508 (605)
.|++++|...|+++. ...|+ ...+..+..+|.+.|++++ ++.|++.. .+.+...|..++.++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al---~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVL---DTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHH---HHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665 22343 4556666666666666666 66665541 23345566666666666666666666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 509 VVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 509 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
.|+++++++|++..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 6666666666666666666666655443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-10 Score=93.41 Aligned_cols=101 Identities=6% Similarity=-0.074 Sum_probs=91.8
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
.+.|+ ...+..+...+.+.|++++|...|++.. .+.+...|..++.++...|++++|+..|+++++++|+++..+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 56666 6688888999999999999999998862 35678899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007400 527 LSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.+|...|++++|+..|+++.+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-09 Score=86.13 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=72.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG 501 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g 501 (605)
.+...+...|++++|..+++++... . +.+...+..++..+...|++++|...++++. .+.+...+..++..+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444444444444444444411 1 1123344444444555555555555554431 1234556666677777777
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 502 NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 502 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++++|...++++++..|.+...+..++.++...|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777777777776543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.6e-09 Score=100.83 Aligned_cols=198 Identities=9% Similarity=0.065 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----------C
Q 007400 319 TFSSCLCACASIVSLKHGKQVHGFLIRT------NF-RSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN----------K 381 (605)
Q Consensus 319 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~ 381 (605)
++..+...+...|++++|...+.++.+. +- +....++..+..+|...|++++|.+.|+.... +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3334444444444444444444444332 11 11233455555556666666666555554321 1
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhh-----
Q 007400 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRS------SVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDL----- 449 (605)
Q Consensus 382 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 449 (605)
....++..+...+...|++++|...++++.+. +-.|+ ..++..+..++...|++++|..+++++....
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12346677777788888888888888877763 11332 3477788888888888888888888877321
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCC------hHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 450 -GIIPN-QEHHACLIELLAQAGC------SDQLMNQLEKMPY-EH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 450 -~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
...+. ...+..+...+...+. +..+...++.... .| ...++..++.+|...|++++|..+++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12222 3344444444433332 3444455555431 12 3457778899999999999999999999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=7.8e-08 Score=89.82 Aligned_cols=200 Identities=9% Similarity=0.050 Sum_probs=115.7
Q ss_pred HhhhcCChhHHHHHHHHHHHhCCC----CCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHHHHccCChH
Q 007400 61 QCAESKSLKLGKRVHLHLKLTQRK----TPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSGYANLGMMK 136 (605)
Q Consensus 61 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 136 (605)
.+...|++++|.+.|...+..... +....+|+.+..+|...|++++|+..+++. +..+...|+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A-----------l~l~~~~g~~~ 114 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA-----------IQIFTHRGQFR 114 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------HHHHHHcCCHH
Confidence 445556666666666655443211 111124455555555555555555443322 11222222222
Q ss_pred HHHHHHhhcCCCCceeHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHhccCChHHHHHHHHH
Q 007400 137 HARNLFDNMAERDVVSWNTMIIGYAKS-GAVEEGLKFYKVLRRFSISC-N----EFSFAGILTICVKLEELKLTRQVHGQ 210 (605)
Q Consensus 137 ~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 210 (605)
.+ ..+++.+...|... |++++|+..|++..+..... + ..++..+...+...|++++|...+++
T Consensus 115 ~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 115 RG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 21 23566777888885 88888888888876521100 1 34577778888888888888888888
Q ss_pred HHHhCCCCChh------HHHHHHHHHHhcCChHHHHHHHhhcCCCCcc--------hHHHHHHHHH--hcCChHHHHHHH
Q 007400 211 VLVTGFLSNVV------ISSSIVDAYAKCGELSDARRLFDETDARDVL--------TWTTMVSGYA--KLGDMESASKLF 274 (605)
Q Consensus 211 ~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~li~~~~--~~~~~~~A~~~~ 274 (605)
..+..+..... .+..+..++...|++++|...|++...-++. .+..++..+. ..+++++|...|
T Consensus 184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 88765433221 4667777888888888888888887654322 1233344443 345677777777
Q ss_pred hhCCCCCh
Q 007400 275 NEMPEKNP 282 (605)
Q Consensus 275 ~~~~~~~~ 282 (605)
+++...++
T Consensus 264 ~~~~~l~~ 271 (292)
T 1qqe_A 264 DNFMRLDK 271 (292)
T ss_dssp TTSSCCCH
T ss_pred ccCCccHH
Confidence 76665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=90.38 Aligned_cols=107 Identities=13% Similarity=-0.003 Sum_probs=91.0
Q ss_pred HHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 441 YFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 441 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.++++. .+.|+ ...+..+...+.+.|++++|...|++.. .+.+...|..++.++...|++++|+..|+++++++
T Consensus 9 ~~~~al---~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLN---EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHH---cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444 45564 5677788888899999999999988762 34678889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 518 PQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 518 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
|+++..+..++.+|...|++++|+..|+...+.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=94.92 Aligned_cols=135 Identities=11% Similarity=0.145 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHH
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELL 465 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 465 (605)
..+..++...|++++|+..|++.++ +.| +...+..+..++...|++++|...|+++. .+.|+ ...+..+..+|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL---QLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHH
Confidence 3488889999999999999999998 456 56789999999999999999999999998 34565 77888888888
Q ss_pred HhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 007400 466 AQAGC--SDQLMNQLEKMPYEHDS--YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS 529 (605)
Q Consensus 466 ~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 529 (605)
...|+ .+.+...+++.. .|+. ..+...+.++...|++++|+..|++++++.|+ ......+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 76654 445666666654 3443 34555677777889999999999999999994 333333333
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-09 Score=86.20 Aligned_cols=99 Identities=8% Similarity=-0.035 Sum_probs=66.1
Q ss_pred CCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 451 IIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 451 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
+.|+ ...+...+..|.+.|++++|++.|++.. .+.+..+|..++.++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4444 3455566666666666666666666541 234566666677777777777777777777777777777777777
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 007400 528 SSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 528 ~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.+|...|++++|++.|++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776655
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-09 Score=110.12 Aligned_cols=159 Identities=12% Similarity=0.063 Sum_probs=124.7
Q ss_pred cCChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 007400 365 CGCLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTY 441 (605)
Q Consensus 365 ~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 441 (605)
.|++++|.+.|++.... .+...|..+...+...|++++|.+.+++..+. .| +...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999876532 35678999999999999999999999999984 56 467899999999999999999999
Q ss_pred HHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 007400 442 FESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH---GNIDMGRKVVDQLID 515 (605)
Q Consensus 442 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 515 (605)
++++.+ ..|+ ...+..+..+|.+.|++++|.+.+++.. .+.+...+..++.++... |++++|.+.++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999983 3454 7789999999999999999999998862 345688899999999999 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 007400 516 QNPQSSATHGLLS 528 (605)
Q Consensus 516 ~~p~~~~~~~~l~ 528 (605)
..|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888888776
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-07 Score=93.84 Aligned_cols=363 Identities=12% Similarity=0.029 Sum_probs=211.6
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCC--CCceeHHHHHHHHHhcCC-hHHHHHHHHHHHh-CCCCC-ChhhHHHHHHHHh
Q 007400 122 YNNMLSGYANLGMMKHARNLFDNMAE--RDVVSWNTMIIGYAKSGA-VEEGLKFYKVLRR-FSISC-NEFSFAGILTICV 196 (605)
Q Consensus 122 ~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~-~~~~p-~~~~~~~ll~~~~ 196 (605)
|...+..+-. |+++.+..+|++... |++..|...+....+.++ .+.+..+|+.... -|..| +...|...+..+.
T Consensus 18 yer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~ 96 (493)
T 2uy1_A 18 MEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEG 96 (493)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTS
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 3333333333 889999999998774 788888888777766663 4567778887765 34333 5667777777654
Q ss_pred c----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 007400 197 K----LEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASK 272 (605)
Q Consensus 197 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 272 (605)
. .++.+.+..+|+..+......-...|...... .+..+...+..++.+.. +.+..|..
T Consensus 97 ~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~-----------------~~y~~ar~ 158 (493)
T 2uy1_A 97 KIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL-----------------PIFQSSFQ 158 (493)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH-----------------HHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh-----------------HHHHHHHH
Confidence 3 35677888888888874221112222222221 11122222332222210 11122222
Q ss_pred HHhhCCC----CChhhHHHHHHHHHhCC--C-----hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHH
Q 007400 273 LFNEMPE----KNPVSWTTLIAGYTRNG--L-----GQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHG 341 (605)
Q Consensus 273 ~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 341 (605)
+++.+.. .+...|...+..-...+ - .+.+..+|+++... .+.+...|...+.-+...|+.+.|..+++
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~e 237 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVE 237 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2221111 13335555554432221 1 34567788887764 24456667667777778888999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHH-HHHHHhcC--C-------C--CCcchHHHHHHHHHHcCCHHHHHHHHHH
Q 007400 342 FLIRTNFRSNTIVMSSLIDMYSKCGCLNDG-RQVFDLTD--N-------K--ENSMLWNTMISALTQHGYDEQAIRLFHD 409 (605)
Q Consensus 342 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 409 (605)
++... +.+...+.. |....+.++. ..+++... . . .....|...+..+.+.++.+.|..+|++
T Consensus 238 rAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~ 311 (493)
T 2uy1_A 238 RGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311 (493)
T ss_dssp HHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88887 444433332 2221111111 11222111 0 0 0124566677777777889999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH
Q 007400 410 MVRSSVKPDKITLAVILNACTH-SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY 488 (605)
Q Consensus 410 m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 488 (605)
. .. ..++...|...+..-.. .++.+.|..+|+...+..+- ++..+...++...+.|+.+.|..+|+++. ....
T Consensus 312 A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~ 385 (493)
T 2uy1_A 312 L-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSR 385 (493)
T ss_dssp H-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHH
T ss_pred h-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHH
Confidence 8 32 12344444433322222 23689999999998854322 24556667787888999999999999985 4678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.|...+..-...|+.+.+..+++++.+.
T Consensus 386 lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 386 MWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8888888888889999999999988863
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-09 Score=93.08 Aligned_cols=158 Identities=11% Similarity=0.022 Sum_probs=121.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHHhccCcHHHHHHHHHHchHhh
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAV----------------ILNACTHSGLVQEGLTYFESMTHDL 449 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~ 449 (605)
+......+...|++++|+..|++.++ ..|+ ...+.. +..++...|++++|+..|+++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--- 81 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL--- 81 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence 34445567788888888888888887 4564 346666 8899999999999999999998
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCchH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN--IDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
...|+ ...+..+..+|...|++++|+..|++.. .+.+..+|..++.++...|+ .+.+...++++....| ....+
T Consensus 82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~ 160 (208)
T 3urz_A 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYAR 160 (208)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHH
Confidence 34565 7889999999999999999999999862 34578889999888866553 4566777777654443 23356
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 525 GLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..++.++...|++++|+..|+++.+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 67888999999999999999998764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-08 Score=82.33 Aligned_cols=131 Identities=15% Similarity=0.210 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
.|..++..+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... . +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 46677788888889999999998888742 225667788888888889999999999888732 1 23466778888889
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 466 AQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
...|++++|...++++. .+.+..++..++..+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999888762 3456778888999999999999999999999998885
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=85.17 Aligned_cols=114 Identities=5% Similarity=-0.030 Sum_probs=94.8
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 007400 415 VKPDK-ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLW 490 (605)
Q Consensus 415 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 490 (605)
+.|+. ..+......+.+.|++++|+..|+++. .+.|+ ...+..+..+|.+.|++++|++.+++.. .+.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV---KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 55643 467778888888899999999998887 23454 7788888889999999999999888762 34578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
..++.++...|++++|+..|+++++++|++..++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999888887763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9.2e-09 Score=84.40 Aligned_cols=101 Identities=13% Similarity=-0.077 Sum_probs=88.0
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 450 GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 450 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
...|+ ...+..+...+.+.|++++|...|++.. .+.+...|..++.++...|++++|+..|+++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 44554 5567778888889999999999998762 34578889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007400 527 LSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.+|...|++++|...++.+.+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-08 Score=106.16 Aligned_cols=168 Identities=8% Similarity=-0.027 Sum_probs=134.4
Q ss_pred hcccchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHc
Q 007400 328 ASIVSLKHGKQVHGFLI--------RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQH 397 (605)
Q Consensus 328 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 397 (605)
...|++++|.+.++++. +.. +.+...+..+...|...|++++|.+.|+.... +.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 333 55667788888899999999999999987653 23677889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLM 475 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 475 (605)
|++++|+..|++.++ +.| +...+..+..++...|++++ ...|+++. ...|+ ...+..+..++.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVW---STNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHH---HhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998 456 45788899999999999999 99999988 33555 778899999999999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHhcCC
Q 007400 476 NQLEKMP-YEHD-SYLWNALHGVCRIHGN 502 (605)
Q Consensus 476 ~~~~~~~-~~~~-~~~~~~l~~~~~~~g~ 502 (605)
+.|++.. ..|+ ...+..++.++...++
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999974 4454 5677778777766555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.6e-09 Score=97.17 Aligned_cols=220 Identities=10% Similarity=0.001 Sum_probs=147.8
Q ss_pred CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-ccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007400 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS-IVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQ 373 (605)
Q Consensus 295 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 373 (605)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777665421 110 111 35666666665543 345667777777777
Q ss_pred HHHhcCC----CCC----cchHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHH
Q 007400 374 VFDLTDN----KEN----SMLWNTMISALTQHGYDEQAIRLFHDMVRSS---VKPD--KITLAVILNACTHSGLVQEGLT 440 (605)
Q Consensus 374 ~~~~~~~----~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~ 440 (605)
.|..... ..+ ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7764321 111 3467778888999999999999998876521 1122 2477888888988 99999999
Q ss_pred HHHHchHhh---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 007400 441 YFESMTHDL---GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRK 508 (605)
Q Consensus 441 ~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~ 508 (605)
.|++...-. +..+. ..++..+..+|.+.|++++|+..+++.. ..++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887321 11111 4678889999999999999999998762 1122 2356667778888899999999
Q ss_pred HHHHHHhcCCCCCch-----HHHHHHHHHhcCCchHHHHH
Q 007400 509 VVDQLIDQNPQSSAT-----HGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 509 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 543 (605)
.|++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 98865543 33455555 56776666553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-08 Score=87.37 Aligned_cols=128 Identities=9% Similarity=-0.100 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIEL 464 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 464 (605)
.+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++... .| +...+..++.+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHH
Confidence 3455666677778888888877765 3556777777777777888888888888777722 23 35677777777
Q ss_pred HHhcCChHHHHHHHHhCC--CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 465 LAQAGCSDQLMNQLEKMP--YEHD----------------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~--~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
|...|++++|.+.+++.. .+.+ ..++..++.++...|++++|...|+++++..|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 777777777777776641 1112 2566677777777777777777777777777754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-08 Score=102.30 Aligned_cols=147 Identities=12% Similarity=0.021 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLM 475 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 475 (605)
|++++|+..+++..+ ..| +...+..+..++...|++++|...+++.. ...|+ ...+..+..+|...|++++|.
T Consensus 3 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555555554 233 23455555555555555555555555555 23333 445555555555555555555
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCchHHHHHHHHHHh
Q 007400 476 NQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL---GKGRLVEKVRQLINE 549 (605)
Q Consensus 476 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 549 (605)
+.+++.. .+.+...+..++.++...|++++|.+.|+++++..|++...+..++.++... |++++|.+.+++..+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5555431 1234445555555555555555555555555555555555555555555555 555555555555433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.1e-08 Score=85.19 Aligned_cols=173 Identities=9% Similarity=-0.043 Sum_probs=127.4
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 007400 336 GKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHG----YDEQAIRLFHDMV 411 (605)
Q Consensus 336 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~m~ 411 (605)
|...|++..+.| ++..+..|...|...+++++|.+.|+......++..+..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444555555543 4555666666676777777777777765555566777777777776 5 8889999998887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHchHhhCCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHh
Q 007400 412 RSSVKPDKITLAVILNACTH----SGLVQEGLTYFESMTHDLGIIPN---QEHHACLIELLAQ----AGCSDQLMNQLEK 480 (605)
Q Consensus 412 ~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 480 (605)
+.| +...+..+...|.. .+++++|..+|++.. ...|+ +..+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 56777788888877 788999999999887 33443 6788888888888 7889999999988
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 007400 481 MP-YEHDSYLWNALHGVCRIH-G-----NIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 481 ~~-~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p 518 (605)
.. ...+...+..|+..|... | ++++|...|+++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 63 235666777888887653 3 89999999999988743
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=96.43 Aligned_cols=197 Identities=7% Similarity=-0.074 Sum_probs=149.4
Q ss_pred cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHH
Q 007400 329 SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFH 408 (605)
Q Consensus 329 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (605)
..|++++|.+++++..+... .. .+...++++.|...|... +..|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHH
Confidence 46788899999988876431 11 011147888888887643 567888999999999999
Q ss_pred HHHHCCC---CC-C-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCC--CCC--HHHHHHHHHHHHhcCChHHHHHHHH
Q 007400 409 DMVRSSV---KP-D-KITLAVILNACTHSGLVQEGLTYFESMTHDLGI--IPN--QEHHACLIELLAQAGCSDQLMNQLE 479 (605)
Q Consensus 409 ~m~~~~~---~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 479 (605)
+..+... .+ . ..+|..+..+|...|++++|+..|++...-..- .|. ..++..+..+|.. |++++|+..++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8775311 11 1 247888899999999999999999987632111 122 4678889999988 99999999998
Q ss_pred hCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCchHHHHHHH
Q 007400 480 KMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS------ATHGLLSSIYSALGKGRLVEKVRQ 545 (605)
Q Consensus 480 ~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 545 (605)
+.. ...+ ..++..++..+...|++++|+..|+++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 752 1111 45788899999999999999999999999866443 366778889999999999999999
Q ss_pred HHH
Q 007400 546 LIN 548 (605)
Q Consensus 546 ~~~ 548 (605)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 887
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-08 Score=86.35 Aligned_cols=186 Identities=12% Similarity=0.003 Sum_probs=132.4
Q ss_pred ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCcc----hHH
Q 007400 316 NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRS--NTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENSM----LWN 388 (605)
Q Consensus 316 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~----~~~ 388 (605)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+.+.. .|+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667778899999999999999999864221 235778889999999999999999998653 23322 455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchHhh
Q 007400 389 TMISALTQ------------------HGYDEQAIRLFHDMVRSSVKPDKI-TLAVILNACTHSGLVQEGLTYFESMTHDL 449 (605)
Q Consensus 389 ~l~~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 449 (605)
.+..++.. .|++++|+..|+++++ ..|+.. ........ ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l----------~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL----------VFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH----------HHHHHHHH---
Confidence 55555554 5789999999999998 456543 22221110 01111111
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 450 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
.....+...|.+.|++++|+..|+++. ..|+ ...+..++.++.+.|+.++|.+.++++....|++..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 122356788999999999999998862 2232 256788899999999999999999999999887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-07 Score=85.40 Aligned_cols=161 Identities=6% Similarity=-0.038 Sum_probs=120.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHH
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSV-KPDKI----TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHA 459 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 459 (605)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998887421 12211 3334666777888999999999998842111222 33688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP-----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATH 524 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 524 (605)
.++.+|...|++++|...++++. .+.+ ..++..++..|...|++++|...++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998887752 1112 3477889999999999999999999999874322 5688
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHHh
Q 007400 525 GLLSSIYSALGK-GRLVEKVRQLINE 549 (605)
Q Consensus 525 ~~l~~~~~~~g~-~~~a~~~~~~~~~ 549 (605)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 5999999887753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-06 Score=80.21 Aligned_cols=225 Identities=10% Similarity=0.041 Sum_probs=145.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccc--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc---
Q 007400 296 GLGQKALELFTRMMILRIRPNQ-HTFSSCLCACASIV--SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMY----SKC--- 365 (605)
Q Consensus 296 g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 365 (605)
...++|+.+++.++.. .|+. ..++.--..+...+ +++++...+..++..+ +-+..+|+.-..++ ...
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3446788888888774 4444 34555555666666 7888888888887765 44445555443333 444
Q ss_pred CChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc------
Q 007400 366 GCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDE--QAIRLFHDMVRSSVKP-DKITLAVILNACTHSGL------ 434 (605)
Q Consensus 366 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~------ 434 (605)
+++++++++++.+.. +-+..+|+-..-.+...|.++ ++++.++++++. .| |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 677777777776542 126666776666677777777 888888888874 34 55667666666666665
Q ss_pred HHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 435 VQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQ-LMNQLEKMPY-----EHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
++++++.++++. ...|+ ...|+.+..++.+.|+... +.++.+++.. ..++..+..++.++.+.|+.++|.
T Consensus 202 ~~eEl~~~~~aI---~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKI---VKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHH---HhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 777777777777 23444 6677777777777776443 4445555421 345667777777777777888888
Q ss_pred HHHHHHHh-cCCCCCchHHHHH
Q 007400 508 KVVDQLID-QNPQSSATHGLLS 528 (605)
Q Consensus 508 ~~~~~~~~-~~p~~~~~~~~l~ 528 (605)
++++.+.+ .+|.....|...+
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHH
Confidence 88888776 5776665555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-07 Score=85.10 Aligned_cols=213 Identities=15% Similarity=0.119 Sum_probs=171.4
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhcCC--CCCcchHHHHHHHH----HHc---CC
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG--CLNDGRQVFDLTDN--KENSMLWNTMISAL----TQH---GY 399 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~----~~~---g~ 399 (605)
...++|...+..++..+ +-+..+|+.-..++...| +++++++.++.+.. +-+..+|+--...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34468999999999887 666778888888888888 99999999997652 22566777665555 555 78
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH--HHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCC-----
Q 007400 400 DEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQ--EGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGC----- 470 (605)
Q Consensus 400 ~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----- 470 (605)
+++++++++++.+. .| |..+|+.-..++...|.++ +++.+++++.. ..| |...|+.-..++.+.|.
T Consensus 126 ~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 126 PYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp THHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhh
Confidence 99999999999984 45 6778888888888888888 99999999983 244 46778777777777776
Q ss_pred -hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCchHHHHH
Q 007400 471 -SDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNI-DMGRKVVDQLIDQN---PQSSATHGLLSSIYSALGKGRLVEKV 543 (605)
Q Consensus 471 -~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~ 543 (605)
++++++.++++ ..+.|...|+.+...+.+.|+. +....++++++++. |.++.++..++++|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 88899888875 2457899999999999888874 44667888888775 77889999999999999999999999
Q ss_pred HHHHHh
Q 007400 544 RQLINE 549 (605)
Q Consensus 544 ~~~~~~ 549 (605)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-07 Score=88.28 Aligned_cols=163 Identities=6% Similarity=-0.051 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCcHHHHHHHHHHchHhhC--CCCC--H
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDK------ITLAVILNACTHSGLVQEGLTYFESMTHDLG--IIPN--Q 455 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 455 (605)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...++++..... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4455667788889999999999888774322 22 2344456667788899999999988762211 1122 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------C
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP-----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ------S 520 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~ 520 (605)
.+++.++..|...|++++|...+++.. .+.+ ..++..++..|...|++++|...++++++..++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999887752 1122 257888999999999999999999999987432 1
Q ss_pred CchHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 007400 521 SATHGLLSSIYSALGKGRLV-EKVRQLINE 549 (605)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 549 (605)
..++..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777877653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-08 Score=85.26 Aligned_cols=157 Identities=11% Similarity=0.039 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-Hh
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA-CT 430 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 430 (605)
.+..+...+...|++++|...|+.... +.+...+..+...+...|++++|+..+++.... .|+......+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 344556667777888888888877653 235667777777888888888888888777663 3443332222211 11
Q ss_pred ccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHH
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEH---DSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~ 505 (605)
..+....|...+++.. ...|+ ...+..+..++...|++++|...++++ ...| +...+..++.++...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al---~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQEL---AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1122234677777776 23454 677778888888888888888888775 2333 25577788888888888888
Q ss_pred HHHHHHHHHh
Q 007400 506 GRKVVDQLID 515 (605)
Q Consensus 506 A~~~~~~~~~ 515 (605)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-08 Score=78.41 Aligned_cols=96 Identities=6% Similarity=-0.096 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..++..+.+.|++++|+..|++.. .+.+...|..++.++...|++++|+..++++++.+|+++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4566677778888888888888887752 34568888899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007400 533 ALGKGRLVEKVRQLINER 550 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~~ 550 (605)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.2e-09 Score=96.60 Aligned_cols=191 Identities=7% Similarity=-0.021 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNA 428 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~ 428 (605)
...+..+...+...|++++|...|+... .+.+...|..+...+...|++++|+..+++.++ +.| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3445556666667777777777776543 122566777777778888888888888888777 345 45577777788
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
+...|++++|...|+++... .|+. ..+...+....+..+...... ......+.+..+...+... ..|++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 88888888888888777632 2211 011111111111111111111 2222334455554444333 268999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007400 508 KVVDQLIDQNPQSSATHGLLSSIYSAL-GKGRLVEKVRQLINER 550 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 550 (605)
+.++++++..|++......+...+.+. +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998887777888878776 7789999999888653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-08 Score=87.07 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=74.7
Q ss_pred ccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH-HHhcCCH--H
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGV-CRIHGNI--D 504 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~g~~--~ 504 (605)
..|++++|...+++.... .| +...+..++.+|...|++++|...+++.. .+.+...+..++.+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 445556666666655522 22 34556666666666666666666666541 12455666666666 6677777 7
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 505 MGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 505 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+|...++++++..|++...+..++.+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7888888888777777777777888888888888888877777654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-07 Score=87.99 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CCcchHHHH-HHHH
Q 007400 317 QHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNK-ENSMLWNTM-ISAL 394 (605)
Q Consensus 317 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l-~~~~ 394 (605)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+... |+....... ...+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3444555556666677777777777666654 445566667777777777777777777766532 333322222 2234
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
...++.++|+..+++.+.. .| +...+..+..++...|++++|...|+++.+...-..+...+..++..|...|+.++
T Consensus 196 ~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 5566666677777777663 44 34566677777777777777777777776321111124455666666666666666
Q ss_pred HHHHHHh
Q 007400 474 LMNQLEK 480 (605)
Q Consensus 474 A~~~~~~ 480 (605)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.5e-08 Score=82.04 Aligned_cols=126 Identities=6% Similarity=-0.040 Sum_probs=93.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVC 497 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 497 (605)
.+..+...+...|+++.|...|++.... .| +...+..++.++...|++++|...+++.. .+.+...+..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555556666667777777777766622 23 35666677777777777777777776642 245677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH--HHHhcCCchHHHHHHHHHHh
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSS--IYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 549 (605)
...|++++|...++++++..|.+...+..+.. .+...|++++|...++...+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988888855444 48888999999999887643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-08 Score=78.20 Aligned_cols=113 Identities=7% Similarity=-0.038 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVC 497 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 497 (605)
.+..+...+...|++++|...|+++. ...| +...+..+..++...|++++|...+++.. .+.+...+..++.++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 44445555555555555555555554 2223 24455555555555555555555555431 234567788888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
...|++++|...++++++..|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999888999999999887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-07 Score=82.37 Aligned_cols=123 Identities=8% Similarity=-0.060 Sum_probs=67.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH 500 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 500 (605)
..+...+...|++++|...|+++. .|+...+..++.+|.+.|++++|...+++.. .+.+...+..++.++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 334444555555556555555442 3345555555555555666666555555431 223455555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 501 GNIDMGRKVVDQLIDQNPQSS----------------ATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
|++++|...|+++++..|.+. ..+..++.+|...|++++|...++++.+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666655555544 55555555666666666665555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.2e-08 Score=86.31 Aligned_cols=135 Identities=9% Similarity=-0.022 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC--HHHHHHHHHHH
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN--QEHHACLIELL 465 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~ 465 (605)
..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHH
Confidence 34566677888888888888877763 4554455555667788888888888887655 211 221 34677888888
Q ss_pred HhcCChHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 466 AQAGCSDQLMNQLEKMPYE---H--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
.+.|++++|+..|++.... | ....+..++.++.+.|+.++|...|++++..+|+ ......|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8999999999888876211 3 3346777888889999999999999999999996 5554444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=6.9e-08 Score=77.51 Aligned_cols=117 Identities=8% Similarity=-0.041 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVC 497 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 497 (605)
..+..+...+...|+++.|...++++... .+.+...+..++.++...|++++|...+++.. .+.+...+..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45566666666777777777777776622 12235666777777777777777777776642 234577888889999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGR 538 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 538 (605)
...|++++|...++++++..|++...+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-05 Score=79.17 Aligned_cols=366 Identities=10% Similarity=0.025 Sum_probs=186.1
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCC-hhHHHHHHHHHHHh-CCCCCchhhHH
Q 007400 15 LPNNCLIQSFLSLISKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKS-LKLGKRVHLHLKLT-QRKTPTTFLSN 92 (605)
Q Consensus 15 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~ 92 (605)
-.-..++..++...-.|+++.+..+|++.... .|+...|...+....+.++ .+....+|+..+.. |..++....+.
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 34445555566555569999999999999884 4788888888887776653 45677788877765 44454444777
Q ss_pred HHHHHHH----hcCChhHHHHHhccCCC-CC--c-hHHHHHHHHHHcc-------------CChHHHHHHHhhcCC----
Q 007400 93 HLISMYF----KCGSDVDARKVFDKIPV-KN--L-FSYNNMLSGYANL-------------GMMKHARNLFDNMAE---- 147 (605)
Q Consensus 93 ~l~~~~~----~~g~~~~a~~~~~~~~~-~~--~-~~~~~li~~~~~~-------------~~~~~A~~~~~~~~~---- 147 (605)
..+..+. ..|+.+.+..+|++... |. . ..|......-... +.+..|..+++.+..
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 7776543 24567788888888754 21 1 1222221111000 111122222221110
Q ss_pred CCceeHHHHHHHHHhcC--C-----hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh
Q 007400 148 RDVVSWNTMIIGYAKSG--A-----VEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV 220 (605)
Q Consensus 148 ~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (605)
.+...|...+..-...+ - .+.+..+|+++... .+-+...|...+..+.+.|+.+.|..+++..+.. +.+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 11122322222211110 0 12234445444432 1223344444444444455555555555555544 1121
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHH
Q 007400 221 VISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQK 300 (605)
Q Consensus 221 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 300 (605)
..+. .|....+.++. ++ .+...+.. ...+.+.. .........|...+....+.++.+.
T Consensus 247 ~l~~----~y~~~~e~~~~---~~-----------~l~~~~~~-~~~~~~~~---~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 247 FLSL----YYGLVMDEEAV---YG-----------DLKRKYSM-GEAESAEK---VFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHH----HHHHHTTCTHH---HH-----------HHHHHTC--------------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHH----HHHhhcchhHH---HH-----------HHHHHHHh-hccchhhh---hcccccHHHHHHHHHHHHHcCCHHH
Confidence 1111 11111111100 00 00000000 00000000 0000122456666777767778888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 301 ALELFTRMMILRIRPNQHTFSSCLCACASIV-SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 301 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
|..+|.+. ... ..+...|......-...+ +.+.|..+|+...+.- +.++..+...++...+.|+.+.|+.+|+.+.
T Consensus 305 AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 305 FRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888 321 123344432222222223 6888888888888754 3345556667777778888888888888873
Q ss_pred CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007400 380 NKENSMLWNTMISALTQHGYDEQAIRLFHDMVR 412 (605)
Q Consensus 380 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 412 (605)
. ....|...+..-...|+.+.+..+++++..
T Consensus 382 k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 382 K--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 456677777766777888888887777663
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.9e-08 Score=93.76 Aligned_cols=93 Identities=9% Similarity=0.036 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+..+|.+.|++++|+..+++.. .+.+...|..++.++...|++++|+..|+++++++|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677888888888888888888888762 34578899999999999999999999999999999999999999999999
Q ss_pred hcCCchHH-HHHHHHH
Q 007400 533 ALGKGRLV-EKVRQLI 547 (605)
Q Consensus 533 ~~g~~~~a-~~~~~~~ 547 (605)
..|++++| ...++.|
T Consensus 276 ~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 276 RIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 99999998 4455555
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-08 Score=82.73 Aligned_cols=115 Identities=8% Similarity=-0.057 Sum_probs=91.5
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 007400 406 LFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP- 482 (605)
Q Consensus 406 ~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 482 (605)
.+++++. +.|+ ...+..+...+...|++++|...|+++. ...| +...+..+..+|...|++++|+..|++..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALC---VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4455555 4553 4477778888888999999999999887 2345 47788888899999999999999998862
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 483 -YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 483 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.+.++..+..++.++...|++++|+..|++++++.|+++....
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 3456788889999999999999999999999999998776644
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-07 Score=75.22 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVC 497 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 497 (605)
..+..+...+...|++++|..+++++... .+.+...+..++..+.+.|++++|...++++. .+.+..++..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666666666777777777777766622 12235566667777777777777777776652 235677888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 007400 498 RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG 535 (605)
Q Consensus 498 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 535 (605)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999988888888888887654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.7e-08 Score=88.20 Aligned_cols=183 Identities=9% Similarity=-0.017 Sum_probs=134.3
Q ss_pred hcCChHHHHHHHHhcCC--CCCcchHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------------
Q 007400 364 KCGCLNDGRQVFDLTDN--KENSMLWNTM-------ISALTQHGYDEQAIRLFHDMVRSSVKPDK--------------- 419 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--------------- 419 (605)
..++...|.+.|.++.. +.....|..+ ...+...++..+++..+++-+. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45667777777765542 2244566666 3455555555566655555544 22221
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 007400 420 -------ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDS----Y 488 (605)
Q Consensus 420 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~ 488 (605)
.....+...+...|++++|.+.|+.+. ...|+......+...+.+.|++++|+..|++....++. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAP---VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC---CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 234456777889999999999999887 34565446777778899999999999999977533333 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQN--PQ-SSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
++..++.++...|++++|+..|+++.... |. .......++.++.+.|+.++|..+|+++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788999999999999999999998653 54 44578899999999999999999999998754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=6.1e-08 Score=79.80 Aligned_cols=104 Identities=8% Similarity=-0.077 Sum_probs=88.2
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 007400 415 VKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLW 490 (605)
Q Consensus 415 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 490 (605)
+.|+ ...+..+...+...|++++|...|+++. ...|+ ...|..+..+|...|++++|+..|++.. .+.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC---IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 4564 3478888888999999999999999998 34565 7788999999999999999999998862 34567889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 521 (605)
..++.++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-06 Score=80.38 Aligned_cols=204 Identities=11% Similarity=-0.014 Sum_probs=139.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhcCC
Q 007400 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIV---MSSLIDMYSKCGCLNDGRQVFDLTDN 380 (605)
Q Consensus 304 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~ 380 (605)
.+.++......|+..+...+...+.-.-+ .+.......+... +...+..+...|++++|...++....
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444444456777766666655542211 1111111222222 22346778889999999999987554
Q ss_pred C-C---Cc----chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCcHHHHHHHHHHchH
Q 007400 381 K-E---NS----MLWNTMISALTQHGYDEQAIRLFHDMVRSSVK-PD----KITLAVILNACTHSGLVQEGLTYFESMTH 447 (605)
Q Consensus 381 ~-~---~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 447 (605)
. + +. ..+..+...+...|++++|+..+++....... ++ ..+++.+..+|...|+++.|..+++++..
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 1 11 12334666677788999999999999984322 22 23688999999999999999999999873
Q ss_pred hh----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 007400 448 DL----GIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-------YEHD-SYLWNALHGVCRIHG-NIDMGRKVVDQL 513 (605)
Q Consensus 448 ~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 513 (605)
.. +..+. ..++..++.+|.+.|++++|...+++.. ..+. ..++..++.++...| ++++|.+.++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 21 22222 4478899999999999999999988651 1122 678888999999999 579999999999
Q ss_pred Hhc
Q 007400 514 IDQ 516 (605)
Q Consensus 514 ~~~ 516 (605)
+++
T Consensus 264 l~i 266 (293)
T 3u3w_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=6.9e-08 Score=76.41 Aligned_cols=95 Identities=8% Similarity=-0.062 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
.+..+...+.+.|++++|+..+++.. .+.+...|..++.++...|++++|+..|+++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567778889999999999998862 3457889999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 007400 535 GKGRLVEKVRQLINERQ 551 (605)
Q Consensus 535 g~~~~a~~~~~~~~~~~ 551 (605)
|++++|+..++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-07 Score=76.46 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 007400 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHG 495 (605)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 495 (605)
...+..+...+...|++++|+..|+++.. ..| +...+..+..+|.+.|++++|+..+++.. .+.+...|..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34666666777777777777777777762 234 35666677777777777777777776641 2345666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
++...|++++|...|++++++.|++...+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 777777777777777777777776666544433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=73.41 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ--SSATHGLLSSI 530 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 530 (605)
...+..++..+...|++++|...+++.. .+.+...+..++.++...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4456667777778888888888777652 2456778888999999999999999999999999998 88999999999
Q ss_pred HHhc-CCchHHHHHHHHHHhCCC
Q 007400 531 YSAL-GKGRLVEKVRQLINERQF 552 (605)
Q Consensus 531 ~~~~-g~~~~a~~~~~~~~~~~~ 552 (605)
+... |++++|.+.++.+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998876543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-07 Score=74.43 Aligned_cols=97 Identities=6% Similarity=-0.158 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 454 NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+...+..+...+...|++++|...+++.. .+.+...|..++.++...|++++|...++++++..|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 46677777778888888888888877651 3456778888889999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007400 532 SALGKGRLVEKVRQLINER 550 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~~ 550 (605)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=6.6e-08 Score=79.19 Aligned_cols=114 Identities=10% Similarity=-0.024 Sum_probs=86.7
Q ss_pred CCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHH
Q 007400 415 VKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLW 490 (605)
Q Consensus 415 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 490 (605)
+.|+ ...+..+...+...|++++|...|+++.. ..| +...+..+..+|.+.|++++|+..+++.. .+.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 3443 34566677777888888888888888772 344 36677788888888888888888888752 24567788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
..++.++...|++++|...|+++++..|+++........+.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 88999999999999999999999999998877665544443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.4e-07 Score=72.02 Aligned_cols=97 Identities=12% Similarity=-0.035 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 454 NQEHHACLIELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+...+..++..+.+.|++++|...+++. . .+.+..++..++..+...|++++|+..++++++..|++...+..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3678889999999999999999999985 2 3457888999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007400 532 SALGKGRLVEKVRQLINER 550 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~~ 550 (605)
...|++++|...+++..+.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-07 Score=74.64 Aligned_cols=94 Identities=6% Similarity=-0.057 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHH
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-------THGL 526 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 526 (605)
..+..++..+.+.|++++|++.|++.. .+.+..+|..++.+|...|++++|+..+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 356667777888888888888887752 2456778888888888899999999999999888776543 5667
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007400 527 LSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 527 l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++.++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888888899999988887765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.3e-07 Score=78.37 Aligned_cols=153 Identities=9% Similarity=-0.036 Sum_probs=86.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhh---CCCCC-HHHHHHHHHHHHhcCCh
Q 007400 396 QHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL---GIIPN-QEHHACLIELLAQAGCS 471 (605)
Q Consensus 396 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~ 471 (605)
..|++++|.++++.+... ......++..+...+...|++++|...+++..... +..|. ..++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566665533333221 11123455555566666666666666666554211 11222 34556666666666776
Q ss_pred HHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----chHHHHHHHHHhcCC
Q 007400 472 DQLMNQLEKMP-----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP--QSS----ATHGLLSSIYSALGK 536 (605)
Q Consensus 472 ~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~ 536 (605)
++|.+.+++.. ...+ ..++..++..+...|++++|...++++++..+ .+. .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 66666665531 1112 23456677777788888888888888876521 121 234677888888888
Q ss_pred chHHHHHHHHHHh
Q 007400 537 GRLVEKVRQLINE 549 (605)
Q Consensus 537 ~~~a~~~~~~~~~ 549 (605)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=79.01 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=100.5
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHH-HHhcCCh
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIEL-LAQAGCS 471 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~ 471 (605)
...|++++|+..+++..+. .| +...+..+..++...|++++|...|+++... .| +...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 4568888899999988874 44 5678889999999999999999999998833 34 46778888888 7789998
Q ss_pred --HHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 472 --DQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 472 --~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
++|...+++.. .+.+...+..++.++...|++++|...|+++++..|++.....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999998862 3456788899999999999999999999999999998765443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.1e-07 Score=73.02 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHH
Q 007400 419 KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNA 492 (605)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 492 (605)
...+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|...+++.. .+.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3455556666666666666666666665 33444 4556666666777777777777666541 2345677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
++.++...|++++|...|+++++..|++...+..+..+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 8888888888888888888888888887777776666653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=81.29 Aligned_cols=163 Identities=11% Similarity=-0.017 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCC-CC-c------chHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 007400 354 VMSSLIDMYSKCGCLNDGRQVFDLTDNK-EN-S------MLWNTMISALTQHGYDEQAIRLFHDMVRSSV---KPD--KI 420 (605)
Q Consensus 354 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~ 420 (605)
.+...+..+...|++++|.+.++..... +. . ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667788889999998888753321 11 1 1234455667778899999999999886321 122 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchH---hhCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTH---DLGIIPN--QEHHACLIELLAQAGCSDQLMNQLEKMP-------YEH-DS 487 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~ 487 (605)
+++.+...|...|++++|...++++.. ..+..+. ..++..++.+|.+.|++++|...+++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 888899999999999999999998873 2222221 2588899999999999999999988751 111 26
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 007400 488 YLWNALHGVCRIHGNIDMG-RKVVDQLIDQ 516 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 516 (605)
.++..++.++...|++++| ...+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 8889998865
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-07 Score=73.32 Aligned_cols=110 Identities=6% Similarity=-0.077 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGV 496 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 496 (605)
..+..+...+...|++++|...|++... ..|+ ...+..+..+|.+.|++++|+..+++.. .+.+...|..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3455566666677777777777776662 2333 5667777777777777777777776652 23567788888999
Q ss_pred HHhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHHH
Q 007400 497 CRIHGNIDMGRKVVDQLIDQN------PQSSATHGLLSSIYS 532 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 532 (605)
+...|++++|...|+++++.. |.+......+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999998 877777777766654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=5.7e-07 Score=70.49 Aligned_cols=94 Identities=9% Similarity=-0.006 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
..+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++..|+++..+..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555556666666666666665541 233556666666666666777777777777777766666666677777777
Q ss_pred cCCchHHHHHHHHHHh
Q 007400 534 LGKGRLVEKVRQLINE 549 (605)
Q Consensus 534 ~g~~~~a~~~~~~~~~ 549 (605)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777777666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.3e-07 Score=76.45 Aligned_cols=95 Identities=5% Similarity=-0.061 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+...+.+.|++++|++.|++.. .+.+...|..++.++...|++++|+..|+++++++|++...+..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445555555556666666665555541 22345555555555556666666666666666666655555666666666
Q ss_pred hcCCchHHHHHHHHHHh
Q 007400 533 ALGKGRLVEKVRQLINE 549 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~ 549 (605)
..|++++|+..|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-07 Score=70.49 Aligned_cols=109 Identities=9% Similarity=0.025 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGV 496 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 496 (605)
..+..+...+...|++++|...++++... .| +...+..++.++...|++++|...+++.. .+.+...+..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666667777777777766622 23 35566667777777777777777776641 23467788888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 497 CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 497 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
+...|++++|...++++++..|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99999999999999999999998888887777664
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-07 Score=80.15 Aligned_cols=94 Identities=9% Similarity=0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
..+..+..+|.+.|++++|+..+++.. .+.+..++..++.++...|++++|+..|+++++..|++..++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 567778888888888888888887752 345788899999999999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHHHh
Q 007400 534 LGKGRLVE-KVRQLINE 549 (605)
Q Consensus 534 ~g~~~~a~-~~~~~~~~ 549 (605)
.|+..++. ..++.+..
T Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88887776 45555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=68.99 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+...+...|++++|.+.++++. .+.+..++..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999998862 34578889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007400 533 ALGKGRLVEKVRQLINER 550 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~~ 550 (605)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.3e-07 Score=75.21 Aligned_cols=65 Identities=9% Similarity=0.025 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+..+|..++.++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34577788888888999999999999999999988899999999999999999999998887763
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-06 Score=69.44 Aligned_cols=96 Identities=13% Similarity=-0.016 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..++..+...|++++|...+++.. .+.+...+..++..+...|++++|...++++++..|+++..+..++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 5678888999999999999999998862 34578889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007400 533 ALGKGRLVEKVRQLINER 550 (605)
Q Consensus 533 ~~g~~~~a~~~~~~~~~~ 550 (605)
..|++++|...+++..+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc
Confidence 999999999999998764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-06 Score=70.48 Aligned_cols=97 Identities=10% Similarity=-0.048 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 007400 454 NQEHHACLIELLAQAGCSDQLMNQLEKM-PYEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLS 528 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 528 (605)
+...+..+...+...|++++|...+++. ...|+ ...+..++.++...|++++|+..++++++..|++...+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4678888999999999999999999986 34566 678888999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007400 529 SIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999988764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.9e-07 Score=79.09 Aligned_cols=153 Identities=10% Similarity=-0.042 Sum_probs=101.3
Q ss_pred hcCChHHHHHHHHhcCCCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCcHH
Q 007400 364 KCGCLNDGRQVFDLTDNKE--NSMLWNTMISALTQHGYDEQAIRLFHDMVR----SSVKP-DKITLAVILNACTHSGLVQ 436 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g~~~ 436 (605)
..|++++|.+.++.+...| ...++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777777222222111 445677777778888888888888877665 11122 2346777777888888888
Q ss_pred HHHHHHHHchHhh---CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCH
Q 007400 437 EGLTYFESMTHDL---GIIP--NQEHHACLIELLAQAGCSDQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNI 503 (605)
Q Consensus 437 ~a~~~~~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~ 503 (605)
+|...+++..... +..| ....+..+...+...|++++|...+++.. ...+ ..++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 8888888776331 2122 13467778888888888888888887641 1122 23456788888999999
Q ss_pred HHHHHHHHHHHhc
Q 007400 504 DMGRKVVDQLIDQ 516 (605)
Q Consensus 504 ~~A~~~~~~~~~~ 516 (605)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999876
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=6.1e-05 Score=70.41 Aligned_cols=227 Identities=12% Similarity=0.069 Sum_probs=141.0
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-
Q 007400 291 GYTRNGLGQKALELFTRMMILRIRPN-QHTFSSCLCACASIV-SLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKC-G- 366 (605)
Q Consensus 291 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 366 (605)
...+.+..++|++++++++.. .|+ ...++.--..+...| .++++...+..++..+ +-+..+|+.-..++.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 334445567888888888874 344 344555555555566 5888888888888766 55666677666666665 6
Q ss_pred ChHHHHHHHHhcCCC--CCcchHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc-
Q 007400 367 CLNDGRQVFDLTDNK--ENSMLWNTMISALTQHGYDE--------QAIRLFHDMVRSSVKP-DKITLAVILNACTHSGL- 434 (605)
Q Consensus 367 ~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~- 434 (605)
++++++++++.+... .|..+|+-..-.+.+.|.++ ++++.++++++. .| |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccc
Confidence 778888888876643 24556655555555545554 788888888884 34 56677777777777665
Q ss_pred ------HHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCCh--------------------HHHHHHHHhCCC----
Q 007400 435 ------VQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCS--------------------DQLMNQLEKMPY---- 483 (605)
Q Consensus 435 ------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~---- 483 (605)
++++++.++++. ...|+ ...|+.+-..+.+.|.. ....+...++..
T Consensus 218 ~~~~~~~~eELe~~~~aI---~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSI---HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 677888887777 33454 66777766667666653 233333333321
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHH
Q 007400 484 ----EHDSYLWNALHGVCRIHGNIDMGRKVVDQLI-DQNPQSSATHG 525 (605)
Q Consensus 484 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~ 525 (605)
.+.+..+..++..|...|+.++|.++++.+. +.+|-....|.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2455666666777777777777777777765 33664444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=70.22 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=64.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHH
Q 007400 460 CLIELLAQAGCSDQLMNQLEKMP--YEHDS---YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS---SATHGLLSSIY 531 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 531 (605)
.+...+...|++++|...+++.. .+.+. ..+..++.++...|++++|...|+++++..|++ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34556666777777777666541 11222 466667777788888888888888888888877 56677888888
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007400 532 SALGKGRLVEKVRQLINER 550 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~~ 550 (605)
...|++++|...++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.8e-07 Score=72.09 Aligned_cols=111 Identities=7% Similarity=-0.126 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHH
Q 007400 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALH 494 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 494 (605)
+...+..+...+...|++++|...|+++.. ..|+ ...+..+..++...|++++|...+++.. .+.+...|..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 455677777777777777777777777762 2333 6677777777778888888877777652 245677888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-----CCchHHHHHHHH
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQ-----SSATHGLLSSIY 531 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 531 (605)
.++...|++++|...|+++++..|+ +......+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876 445555555444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.46 E-value=7.4e-07 Score=72.39 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQ-------NPQSSATH----GLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..|..++.++...|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 48888999999999999999999999999 99999999 99999999999999999999998764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.7e-07 Score=89.48 Aligned_cols=118 Identities=4% Similarity=-0.029 Sum_probs=92.5
Q ss_pred HHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007400 426 LNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN 502 (605)
Q Consensus 426 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 502 (605)
...+...|++++|...++++.+ ..|+ ...+..+..+|.+.|++++|++.+++.. .+.+..+|..++.++...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445667788888888887772 2444 6777888888888888888888887752 24567889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 007400 503 IDMGRKVVDQLIDQNPQSSATHGLLSSI--YSALGKGRLVEKVRQL 546 (605)
Q Consensus 503 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 546 (605)
+++|++.|+++++..|++...+..++.+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 8889999999999884
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-06 Score=71.03 Aligned_cols=127 Identities=9% Similarity=-0.093 Sum_probs=96.3
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLI 462 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 462 (605)
..|..+...+...|++++|...|++..+. .| +..++..+..++...|++++|...+++.... .| +...+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 45667777788888999999988888874 44 5668888888888889999999999888732 34 467888888
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 463 ELLAQAGCSDQLMNQLEKMP--YEHDSYLWNA--LHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.++...|++++|...+++.. .+.+...+.. .+..+...|++++|...+++..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88999999999998888762 2345555533 444477789999999998887654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-06 Score=85.36 Aligned_cols=95 Identities=7% Similarity=-0.016 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...|..+..+|.+.|++++|+..+++.. .+.+...|..++.+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4677888888999999999998888762 34578899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHHHh
Q 007400 533 ALGKGRLVEK-VRQLINE 549 (605)
Q Consensus 533 ~~g~~~~a~~-~~~~~~~ 549 (605)
+.|+++++.. .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998764 4555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=9.2e-07 Score=88.51 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=62.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCCh
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCS 471 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 471 (605)
+.+.|++++|++.+++.++ ..| +..++..+..++...|++++|+..++++. .+.|+ ...+..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAI---ELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCH
Confidence 4455666666666666666 334 34566666666666666666666666666 22343 55666666666666666
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007400 472 DQLMNQLEKMP--YEHDSYLWNALHGV--CRIHGNIDMGRKVVD 511 (605)
Q Consensus 472 ~~A~~~~~~~~--~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 511 (605)
++|.+.+++.. .+.+...+..+..+ +...|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666541 11223334434333 556667777777766
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-06 Score=68.58 Aligned_cols=98 Identities=6% Similarity=-0.008 Sum_probs=52.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHHHH
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-----YEHD----SYLWNAL 493 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~~l 493 (605)
.+...+.+.|++++|+..|+++. .+.|+ ...|..+..+|.+.|++++|++.+++.. ..++ ..+|..+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al---~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAI---ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 33444444444444444444444 11222 3344444444444444444444444321 0111 2356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
+.++...|++++|++.|+++++..| ++....
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 7888888999999999999988877 444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-06 Score=81.93 Aligned_cols=129 Identities=9% Similarity=-0.012 Sum_probs=101.6
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD----------------KITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
+...|..+...+.+.|++++|+..|++.++. .|+ ..++..+..++.+.|++++|+..++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3446677777788888888888888888773 444 3688888889999999999999999888
Q ss_pred HhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 007400 447 HDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMG-RKVVDQLIDQ 516 (605)
Q Consensus 447 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 516 (605)
. +.|+ ...+..+..+|...|++++|+..|++.. .+.+..++..+..++...|++++| ...|++++..
T Consensus 224 ~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 224 E---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp H---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3454 7788889999999999999999998762 345677888888899999999888 5577777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.2e-06 Score=72.22 Aligned_cols=94 Identities=4% Similarity=-0.121 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP--YEHD----------------SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
.+..+...+.+.|++++|...|++.. .+.+ ..++..++.++...|++++|+..++++++..|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 34445555555555555555555431 0111 36788899999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 519 QSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 519 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++..++..++.+|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-05 Score=73.79 Aligned_cols=213 Identities=12% Similarity=0.108 Sum_probs=157.0
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcCCC--CCcchHHHHHHHHHHc-C-CHHHHHH
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG-CLNDGRQVFDLTDNK--ENSMLWNTMISALTQH-G-YDEQAIR 405 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~-g-~~~~a~~ 405 (605)
+..++|..++..++..+ +-+..+|+.--.++...| .++++++.++.+... -+..+|+-....+... + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44567889999999887 566777888777888888 599999999976532 2667788777777776 7 8999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH--------HHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCC-----
Q 007400 406 LFHDMVRSSVKP-DKITLAVILNACTHSGLVQ--------EGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGC----- 470 (605)
Q Consensus 406 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~----- 470 (605)
+++++++. .| |..+|+.-..++.+.|.++ ++++.++++.. ..| |...|+....++.+.+.
T Consensus 147 ~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 147 YIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccccch
Confidence 99999984 45 6667777666666666665 89999999983 244 57788888888888876
Q ss_pred --hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCC
Q 007400 471 --SDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNI--------------------DMGRKVVDQLIDQN------PQS 520 (605)
Q Consensus 471 --~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~ 520 (605)
++++++.++++ ..+.|...|+.+...+...|+. ....+...+++... +.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 67888888775 2456888999888888776653 23333333333222 346
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 521 SATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+.++..|+++|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 67788999999999999999999999864
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-06 Score=69.06 Aligned_cols=95 Identities=15% Similarity=0.010 Sum_probs=55.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH 500 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 500 (605)
.+...+...|++++|...++++. ...| +...+..+..++.+.|++++|+..+++.. .+.+...+..++.++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVC---QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34444555555555555555555 1233 24555555666666666666666665541 234566777778888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCC
Q 007400 501 GNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~ 521 (605)
|++++|+..++++++..|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888887543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5.7e-05 Score=70.24 Aligned_cols=162 Identities=9% Similarity=0.021 Sum_probs=94.3
Q ss_pred CcchHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCc-HHHHHHHHHHchHhhCCCC-CHHH
Q 007400 383 NSMLWNTMISALTQHG--YDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGL-VQEGLTYFESMTHDLGIIP-NQEH 457 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~ 457 (605)
+..+|+--...+...| .+++++.++.++.+. .| |..+|+.-..++...|. ++++++.++++... .| |...
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SA 181 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSS 181 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHH
Confidence 4445555544555555 356666666666663 33 44455555555555555 46666666666621 23 3445
Q ss_pred HHHHHHHHHhc--------------CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHH
Q 007400 458 HACLIELLAQA--------------GCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIH-----------GNIDMGRKVV 510 (605)
Q Consensus 458 ~~~l~~~~~~~--------------g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~ 510 (605)
|+....++.+. +.++++++.+.+. ..+.|..+|+.+-..+... +.++++++.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 55555444443 3456666666654 1345666776655555444 4578888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHh
Q 007400 511 DQLIDQNPQSSATHGLLSSIYS---ALGKGRLVEKVRQLINE 549 (605)
Q Consensus 511 ~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~ 549 (605)
+++++..|++..++..++.+.. ..|..++....++++.+
T Consensus 262 ~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 262 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 8888888887555554443322 35667777888887765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-07 Score=71.91 Aligned_cols=63 Identities=16% Similarity=0.126 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..++..++.++...|++++|+..|+++++..|+++.++..++.++...|++++|+..+++..+
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666666666665544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.4e-07 Score=85.34 Aligned_cols=146 Identities=12% Similarity=0.014 Sum_probs=80.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 464 (605)
..+..+...+.+.|++++|+..|++.+. +.|+... +...|+.+++...+. ...+..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3455566667777888888888887776 3454332 233344444433221 1367888899
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hcCCchHHH
Q 007400 465 LAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS-ALGKGRLVE 541 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~ 541 (605)
|.+.|++++|+..+++.. .+.+...|..++.+|...|++++|+..|++++++.|++..++..++.+.. ..+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998762 34578889999999999999999999999999999999999988888844 456677788
Q ss_pred HHHHHHHhC
Q 007400 542 KVRQLINER 550 (605)
Q Consensus 542 ~~~~~~~~~ 550 (605)
..|+.+...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-06 Score=69.16 Aligned_cols=96 Identities=9% Similarity=-0.005 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-------SATHG 525 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 525 (605)
...+..++..+...|++++|...+++.. .+.+..++..++..+...|++++|...++++++..|++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456777788888888888888887752 34567888889999999999999999999999997766 77889
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 526 LLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 526 ~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++.++...|++++|...++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-06 Score=82.86 Aligned_cols=89 Identities=7% Similarity=-0.085 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+..+|.+.|++++|++.+++. . .+.+...|..++.++...|++++|+..|++++++.|++...+..++.++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 568888999999999999999999886 2 23468889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHH
Q 007400 533 ALGKGRLVEKV 543 (605)
Q Consensus 533 ~~g~~~~a~~~ 543 (605)
..++.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 98888877653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-06 Score=66.84 Aligned_cols=107 Identities=13% Similarity=-0.019 Sum_probs=67.0
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC---HHHHHHHHHHHH
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHD---SYLWNALHGVCR 498 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~---~~~~~~l~~~~~ 498 (605)
+...+...|++++|...|+++.....-.+. ...+..++.++.+.|++++|...+++.. .+.+ ..++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455556666666666665522111110 1355556666666666666666666541 1222 566777888889
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 499 IHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 499 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
..|++++|...|+++++..|+++........+-
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 999999999999999999997766655544443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-05 Score=79.08 Aligned_cols=162 Identities=5% Similarity=-0.151 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHhccCcHHHHHHHHHHchHh---hCCCCC-HHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDK----ITLAVILNACTHSGLVQEGLTYFESMTHD---LGIIPN-QEH 457 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 457 (605)
+..++..|...|++++|.+.+.++...- ..++. .+.+.+...+...|+++.|..+++....- .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4455566666666666666665544310 01111 12223333344556666666666655421 122222 445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC----Cc
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKMP-------YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ---NPQS----SA 522 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~----~~ 522 (605)
+..|+..|...|++++|..++++.. .++ ...++..++..|...|++++|..++++++.. .+++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6666666777777777766665431 111 1345556666677777777777777766654 2211 13
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.+..++.++...|++++|...+....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666666677777666655543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=73.11 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSS-ATHGLLSSIY 531 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~ 531 (605)
...+..+..+|.+.|++++|+..+++.. .+.+...|..++.++...|++++|...|+++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4678888889999999999999888762 345788999999999999999999999999999999887 4455555554
Q ss_pred H
Q 007400 532 S 532 (605)
Q Consensus 532 ~ 532 (605)
.
T Consensus 143 ~ 143 (162)
T 3rkv_A 143 E 143 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.31 E-value=4e-06 Score=77.48 Aligned_cols=112 Identities=7% Similarity=-0.137 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHH
Q 007400 418 DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALH 494 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~ 494 (605)
+...+..+...+...|++++|...|+++.. ..| +...+..+..+|.+.|++++|...+++. . .+.+...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456788888899999999999999999883 355 4778899999999999999999999885 2 345678888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
.++...|++++|...|++++++.|++...+...++...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 99999999999999999999998877554444444333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-06 Score=71.16 Aligned_cols=129 Identities=11% Similarity=-0.010 Sum_probs=79.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEKMP----YEHD----SY 488 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~ 488 (605)
++..+...+...|++++|...+++......-.++ ..++..+...+...|++++|.+.+++.. ..++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555554421100011 1355566666666677666666665531 0111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 489 LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ------SSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 489 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++..++..+...|++++|...++++++..+. ....+..++.++...|++++|...+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667778888888999999988888876221 235677889999999999999998887754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=69.18 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=67.5
Q ss_pred cCcHHHHHHHHHHchHhhCC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007400 432 SGLVQEGLTYFESMTHDLGI---IPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 432 ~g~~~~a~~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 505 (605)
.|++++|+..|+++. .. .|+ ...+..+..+|...|++++|+..+++.. .+.+..++..++.++...|++++
T Consensus 3 ~g~~~~A~~~~~~al---~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHH---SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHH---HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 466777777777777 33 243 5677778888888888888888887752 34567888889999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHH
Q 007400 506 GRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 506 A~~~~~~~~~~~p~~~~~~~ 525 (605)
|+..++++++..|+++....
T Consensus 80 A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999997765543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=70.95 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKM--------PYEHD-SYLW----NALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT 523 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 523 (605)
.|..+..++.+.|++++|+..+++. ...|+ ...| ...+.++...|++++|+..|++++++.|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666666666666655543 12454 5678 899999999999999999999999999988877
Q ss_pred HHHHHHHH
Q 007400 524 HGLLSSIY 531 (605)
Q Consensus 524 ~~~l~~~~ 531 (605)
+..+..+-
T Consensus 139 ~~~~~~~~ 146 (159)
T 2hr2_A 139 TPGKERMM 146 (159)
T ss_dssp CTTHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-06 Score=68.11 Aligned_cols=111 Identities=7% Similarity=-0.037 Sum_probs=66.6
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCC----HHHHH
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-----YEHD----SYLWN 491 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~----~~~~~ 491 (605)
.+..+...+...|+++.|...++++... .+.+...+..++..+...|++++|...+++.. ..++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444444445555555555555554411 11124445555555555555555555555431 1122 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
.++.++...|++++|...|+++++..| ++.....+..+....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 788888899999999999999999888 677777776665543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.9e-06 Score=64.83 Aligned_cols=100 Identities=10% Similarity=-0.018 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCC--CHHHHHHHHH
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEH--DSYLWNALHG 495 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~ 495 (605)
..+..+...+...|++++|...++++... .+.+...+..+..++...|++++|...+++.. .+. +..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34555555666666666666666666522 11234556666666777777777777666541 223 5677788888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 007400 496 VCRIH-GNIDMGRKVVDQLIDQNPQSS 521 (605)
Q Consensus 496 ~~~~~-g~~~~A~~~~~~~~~~~p~~~ 521 (605)
++... |++++|.+.++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 888888888888888887553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00033 Score=65.13 Aligned_cols=231 Identities=11% Similarity=0.019 Sum_probs=152.2
Q ss_pred HhCCChH-HHHHHHHHHHHCCCCCChHH-HHHHHHHHhcccc----------hHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 293 TRNGLGQ-KALELFTRMMILRIRPNQHT-FSSCLCACASIVS----------LKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 293 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
.+.|.++ +|+.++..+... .|+..| ++.--..+...+. ++++..++..+...+ +-+..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3455554 678888887764 454433 3332222222222 567778888888766 566777777666
Q ss_pred HHHhcC--ChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc--
Q 007400 361 MYSKCG--CLNDGRQVFDLTDN--KENSMLWNTMISALTQHGY-DEQAIRLFHDMVRSSVKP-DKITLAVILNACTHS-- 432 (605)
Q Consensus 361 ~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~-- 432 (605)
++.+.| .+++++.+++.+.. +-|..+|+--.-.+...|. ++++++.+.++++. .| |...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhh
Confidence 677777 47888888887652 2267777777777777887 58999999999985 44 555666655554443
Q ss_pred ------------CcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCC-
Q 007400 433 ------------GLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQA-----------GCSDQLMNQLEKM-PYEHD- 486 (605)
Q Consensus 433 ------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~~~- 486 (605)
+.++++++.+.... ...|+ ...|+.+-..+.+. +.++++++.++++ ...||
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai---~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 56788999998888 33555 66776666666555 4567888888776 23344
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 007400 487 SYLWNALHGV---CRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIY 531 (605)
Q Consensus 487 ~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 531 (605)
...+..++.. ....|..++....+.++++++|....-|..+..-+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3333332221 12357888999999999999998888777776554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5e-06 Score=62.92 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 484 EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+.+...+..++.++...|++++|+..|+++++.+|+++.+|..++.+|...|++++|+..+++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999999999999999999999999988753
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.4e-07 Score=69.86 Aligned_cols=93 Identities=10% Similarity=-0.012 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 007400 454 NQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS------SATHG 525 (605)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 525 (605)
+...+..+...+.+.|++++|.+.+++.. .+.+...|..++.++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567777888888888888888887752 34578889999999999999999999999999999988 77788
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 007400 526 LLSSIYSALGKGRLVEKVRQL 546 (605)
Q Consensus 526 ~l~~~~~~~g~~~~a~~~~~~ 546 (605)
.++.++...|+++.|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888777665553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.4e-05 Score=77.73 Aligned_cols=168 Identities=9% Similarity=-0.021 Sum_probs=133.3
Q ss_pred ChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 007400 367 CLNDGRQVFDLTDN--KENSMLWNTMISALTQHGY----------DEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSG 433 (605)
Q Consensus 367 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 433 (605)
..++|.+.++.+.. +.+..+|+.-...+...|+ ++++++.++++.+. .| +..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34566777776542 2255667776666666666 89999999999984 55 5668888888888888
Q ss_pred --cHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc-------
Q 007400 434 --LVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAG-CSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH------- 500 (605)
Q Consensus 434 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------- 500 (605)
++++++..++++.+ ..| +...|+.-..++.+.| .++++++.++++- .+.+..+|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 77999999999983 344 4778888888888889 8999999998873 345788888887777653
Q ss_pred -------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 501 -------GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 501 -------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
+.++++++.+++++..+|++..+|..+..++.+.|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999988655
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=9.6e-06 Score=67.54 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC----HH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVK-PDK----ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN----QE 456 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 456 (605)
++..+...+...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666677777777777777766542100 111 36666777777888888888888776532111111 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 517 (605)
.+..+...+...|++++|.+.+++.. ...+ ..++..++..+...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66777788888888888888776641 0111 3456778888999999999999999998863
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.2e-06 Score=80.44 Aligned_cols=151 Identities=10% Similarity=0.016 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007400 352 TIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACT 430 (605)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 430 (605)
...+..+...+.+.|++++|...|+.... .|+... +...|+.+++...+. ...+..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34567788889999999999999987543 222221 222333333332221 136778888888
Q ss_pred ccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCHHHH
Q 007400 431 HSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGV-CRIHGNIDMG 506 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~g~~~~A 506 (605)
+.|++++|+..++++.. +.| +...+..+..+|...|++++|...|++.. ..| +..++..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998882 345 47788889999999999999999998873 333 44555555555 3445678889
Q ss_pred HHHHHHHHhcCCCCCc
Q 007400 507 RKVVDQLIDQNPQSSA 522 (605)
Q Consensus 507 ~~~~~~~~~~~p~~~~ 522 (605)
...|++++...|.++.
T Consensus 319 ~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ----------------
T ss_pred HHHHHHhhCCCCCCCC
Confidence 9999999999886543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-05 Score=79.02 Aligned_cols=65 Identities=5% Similarity=-0.142 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..+|..++.++.+.|++++|+..++++++++|++..++..++.+|...|++++|+..|+++.+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 57888899999999999999999999999999999999999999999999999999999998753
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=77.16 Aligned_cols=113 Identities=7% Similarity=-0.085 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007400 420 ITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI 499 (605)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 499 (605)
..+..+...+.+.|++++|+..|+++.+. .+.. ......+++.. . .+.+..+|..++.++.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~---~~~~----------~~~~~~~~~~~----~-~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY---VEGS----------RAAAEDADGAK----L-QPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHH----------HHHSCHHHHGG----G-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhcC----------ccccChHHHHH----H-HHHHHHHHHHHHHHHHh
Confidence 45666777777777888888777777621 0100 00001111110 1 12345688889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.|++++|+..++++++.+|+++.++..++.+|...|++++|+..++++.+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-05 Score=58.81 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
...+..+...+...|++++|...+++.. .+.+..++..++.++...|++++|...++++++..|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566677777888888888888877652 23467788888889999999999999999999999988899988988887
Q ss_pred hcC
Q 007400 533 ALG 535 (605)
Q Consensus 533 ~~g 535 (605)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.2e-05 Score=57.03 Aligned_cols=69 Identities=10% Similarity=-0.057 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007400 484 EHDSYLWNALHGVCRIHGN---IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 552 (605)
+.++..+..++.++...++ .++|..+++++++.+|++..+...++..+.+.|++++|+.+|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678888888888876555 79999999999999999999999999999999999999999999987643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.4e-05 Score=75.63 Aligned_cols=159 Identities=10% Similarity=0.053 Sum_probs=117.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKPD----------------KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN 454 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 454 (605)
...+...|++++|++.|.++.+...... ...+..++..|...|++++|..++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888776422111 124778899999999999999999998754333333
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 007400 455 Q----EHHACLIELLAQAGCSDQLMNQLEKM-------PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQ------ 516 (605)
Q Consensus 455 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 516 (605)
. .+.+.+...+...|++++|..++++. ...+ -..++..++..+...|++++|..+++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23444555566788999999888764 2222 2567788999999999999999999999875
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 517 NPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 517 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222345788999999999999999999988754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.07 E-value=1e-05 Score=63.00 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=62.6
Q ss_pred HHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 474 LMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 474 A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
|++.+++. . .+.+...+..++..+...|++++|+..|+++++..|++...+..++.+|...|++++|...+++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444443 1 23567788888889999999999999999999999988889999999999999999999999887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=9.4e-06 Score=80.57 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=91.7
Q ss_pred HhccCcHHHHHHHHHHchHhh--CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHhC--------C-CCCC-HHHHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDL--GI---IPN-QEHHACLIELLAQAGCSDQLMNQLEKM--------P-YEHD-SYLWNA 492 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~ 492 (605)
+...|++++|..++++..... -+ .|+ ..+++.|+.+|...|++++|..++++. + ..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456777888877777665322 11 233 457788888888888888888877764 1 2233 456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 493 LHGVCRIHGNIDMGRKVVDQLIDQ-----NPQSSA---THGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 493 l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
|+..|..+|++++|+.+++++++. .|+++. ....+..++...|++.+|+..++.+++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 566654 44578889999999999999999987643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=5.2e-06 Score=67.24 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=54.4
Q ss_pred CChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-
Q 007400 469 GCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGN----------IDMGRKVVDQLIDQNPQSSATHGLLSSIYSALG- 535 (605)
Q Consensus 469 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 535 (605)
+.+++|...+++.. .+.+...|..++.++...++ +++|+..|+++++++|++..+|..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 34455555444431 22345555555555554443 468888888888888888888888888888764
Q ss_pred ----------CchHHHHHHHHHHhC
Q 007400 536 ----------KGRLVEKVRQLINER 550 (605)
Q Consensus 536 ----------~~~~a~~~~~~~~~~ 550 (605)
++++|+..|++..+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 788888888887764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=8.5e-05 Score=59.88 Aligned_cols=89 Identities=9% Similarity=-0.066 Sum_probs=48.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---
Q 007400 461 LIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA--- 533 (605)
Q Consensus 461 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 533 (605)
|...|...+.+++|.+.|++.....++..+..++..|.. .+++++|+..|+++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 344444444444444444443222445555555555555 55666666666666655 245566666666666
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 007400 534 -LGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 534 -~g~~~~a~~~~~~~~~~~ 551 (605)
.+++++|...+++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 566666666666665554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.3e-05 Score=58.82 Aligned_cols=65 Identities=15% Similarity=-0.030 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+...+..++..+...|++++|+..|+++++..|+++..+..++.++...|++++|+..+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999998864
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=8.8e-05 Score=59.31 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCce
Q 007400 484 EHDSYLWNALHGVCRIHG---NIDMGRKVVDQLIDQN-P-QSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAI 558 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 558 (605)
+++..+...+++++.+.+ ++++++.+++.+++.+ | ++...++.|+-+|.+.|++++|.++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 356666666777777666 5557777777777776 5 45667777777777777777777777777652
Q ss_pred eEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCC
Q 007400 559 SWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600 (605)
Q Consensus 559 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 600 (605)
.|+..++....+.+.++++++|.+
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 455555555556666666666643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.4e-05 Score=77.70 Aligned_cols=116 Identities=8% Similarity=-0.031 Sum_probs=89.8
Q ss_pred HHHHhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---CchH
Q 007400 463 ELLAQAGCSDQLMNQLEKMP---------YEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-----NPQS---SATH 524 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~---~~~~ 524 (605)
..+..+|++++|+.++++.. ..|+ ..+++.|+.+|..+|++++|+.+++++++. .|++ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999887641 1222 457888999999999999999999999875 4444 4677
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhh
Q 007400 525 GLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596 (605)
Q Consensus 525 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 596 (605)
..|+.+|..+|++++|+.++++..+-... .. ...||...++..+|.++..+++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~l-G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-----------------TH-GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HT-CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------Hh-CCCChHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988653110 11 23699999999988888876654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00013 Score=53.60 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+...+..++..+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888999999999999999999999999999999999999999999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.3e-05 Score=63.51 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=66.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH----------HHHHHHHHHchHhhCCCCC-HHHHHHHH
Q 007400 395 TQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLV----------QEGLTYFESMTHDLGIIPN-QEHHACLI 462 (605)
Q Consensus 395 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~p~-~~~~~~l~ 462 (605)
.+.+.+++|++.+++.++ +.| +...+..+..++...+++ ++|+..|++.. .+.|+ ...|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHH
Confidence 445556666666666666 344 445666666666665543 24555555444 23343 33444444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 007400 463 ELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 542 (605)
.+|...|.+ .|+.. ...|++++|+..|+++++++|++......+- ..++|.+
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~e 139 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQ 139 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHh
Confidence 444443332 12211 0126899999999999999997643322222 2245555
Q ss_pred HHHHHHhC
Q 007400 543 VRQLINER 550 (605)
Q Consensus 543 ~~~~~~~~ 550 (605)
+.-.+...
T Consensus 140 l~~~~~~~ 147 (158)
T 1zu2_A 140 LHAEAYKQ 147 (158)
T ss_dssp HHHHHHHS
T ss_pred ccCccccc
Confidence 55555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00026 Score=72.10 Aligned_cols=148 Identities=16% Similarity=0.079 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHchHhhCCCCC-HHHHHHHHHHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKPDK-ITLAVILNACTHSGL----------VQEGLTYFESMTHDLGIIPN-QEHHACLIELL 465 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 465 (605)
...++|++.+++++. +.|+. .+|+.-..++...|+ +++++..++.+.+ ..|. ..+|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 345688999999999 56754 577776667766666 8999999999983 3454 77888888999
Q ss_pred HhcC--ChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc------
Q 007400 466 AQAG--CSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG-NIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL------ 534 (605)
Q Consensus 466 ~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 534 (605)
.+.| +++++++.++++- .+.+..+|+.-..++...| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 6799999999872 4568889999888888889 899999999999999999999999999999885
Q ss_pred --------CCchHHHHHHHHHHhC
Q 007400 535 --------GKGRLVEKVRQLINER 550 (605)
Q Consensus 535 --------g~~~~a~~~~~~~~~~ 550 (605)
+.++++.+.++.+...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5568888888777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00023 Score=69.51 Aligned_cols=117 Identities=11% Similarity=0.012 Sum_probs=90.1
Q ss_pred HHHHHhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---Cch
Q 007400 462 IELLAQAGCSDQLMNQLEKMP------YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-----NPQS---SAT 523 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~------~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~---~~~ 523 (605)
+.-+.+.|++++|+.++++.. ..|+ ..+++.++.+|..+|++++|+.+++++++. .|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344667889999998887641 1222 457888999999999999999999999875 3443 457
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhh
Q 007400 524 HGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGE 596 (605)
Q Consensus 524 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 596 (605)
+..|+.+|..+|++++|+.++++..+--. ..-...||...+++..|++....|+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999998865211 01123699999999999999988864
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=56.82 Aligned_cols=79 Identities=14% Similarity=0.024 Sum_probs=56.1
Q ss_pred HHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007400 438 GLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLI 514 (605)
Q Consensus 438 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 514 (605)
|+..|+++. ...|+ ...+..+..+|...|++++|+..+++.. .+.+...|..++.++...|++++|...|++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566555 33443 5666777777777777777777776642 23457778888888888899999999999988
Q ss_pred hcCCC
Q 007400 515 DQNPQ 519 (605)
Q Consensus 515 ~~~p~ 519 (605)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 88664
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.65 E-value=2e-06 Score=81.40 Aligned_cols=393 Identities=12% Similarity=0.105 Sum_probs=178.3
Q ss_pred hHHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 007400 120 FSYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLE 199 (605)
Q Consensus 120 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 199 (605)
.+|..+..+....+++.+|++-|-+ ..|+..|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-+|++.+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTN 130 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSC
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhC
Confidence 4455566666666666655544432 2355556666666666666666666666555532222 23345566666666
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC
Q 007400 200 ELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPE 279 (605)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 279 (605)
++.+.++++ -.|+..-...+.+-|...|.++.|.-+|..+..- ..|...+.+.|++..|.+.-++ .
T Consensus 131 rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~-----akLAstLV~L~~yq~AVdaArK--A 196 (624)
T 3lvg_A 131 RLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF-----GRLASTLVHLGEYQAAVDGARK--A 196 (624)
T ss_dssp SSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC-----TTTSSSSSSCSGGGSSTTTTTT--C
T ss_pred cHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH-----HHHHHHHHHHHHHHHHHHHHHh--c
Confidence 655444332 1244444455566666666666666555544321 1111112222222222221111 1
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 007400 280 KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI 359 (605)
Q Consensus 280 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 359 (605)
.++.+|-.+-.+|...+++.-|...--.+.- .|+ ....++..|-..|.+++...+++...... .....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 2444555555555555555444333222221 111 11112333444455555444444443211 23344445444
Q ss_pred HHHHhcCChHHHHHHHHhcCCC----------CCcchHHHHHHHHHHcCCHHHHHHH-------------HHHHHHCCCC
Q 007400 360 DMYSKCGCLNDGRQVFDLTDNK----------ENSMLWNTMISALTQHGYDEQAIRL-------------FHDMVRSSVK 416 (605)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~-------------~~~m~~~~~~ 416 (605)
-.|++- ++++..+.++..-.+ -....|.-++-.|..-.+++.|... |.+.+. -.
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KV 347 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KV 347 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GC
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--Hc
Confidence 444442 333333333322211 1233455555555555555544321 111111 01
Q ss_pred CCHHHH---------------HHHHHHHhccCcHHHHHHHHHHchHhh-------CC--CCCHHHHHHHHHHHHhcCChH
Q 007400 417 PDKITL---------------AVILNACTHSGLVQEGLTYFESMTHDL-------GI--IPNQEHHACLIELLAQAGCSD 472 (605)
Q Consensus 417 p~~~~~---------------~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~--~p~~~~~~~l~~~~~~~g~~~ 472 (605)
.|...| +-|+.++...=|..++.++|++.-.-. .+ .-+..+=.++-+.|....+++
T Consensus 348 aN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~ 427 (624)
T 3lvg_A 348 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 427 (624)
T ss_dssp SCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH
T ss_pred chHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH
Confidence 122222 223333333334444445544432000 01 112344456667777888877
Q ss_pred HHHHHHHhCC------------CCCCHHHHHHHHHHHHhcCCHHHHHHH------HHHHHhc--CCCCCchHHHHHHHHH
Q 007400 473 QLMNQLEKMP------------YEHDSYLWNALHGVCRIHGNIDMGRKV------VDQLIDQ--NPQSSATHGLLSSIYS 532 (605)
Q Consensus 473 ~A~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~------~~~~~~~--~p~~~~~~~~l~~~~~ 532 (605)
.-.+.++... ..+-......-+..|.+.++++++.++ |+.+++. ...+...-..|.+-+.
T Consensus 428 ~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv 507 (624)
T 3lvg_A 428 ALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFL 507 (624)
T ss_dssp HHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6655554332 112233334445567777888877654 4444443 3345555556666666
Q ss_pred hcCCchH
Q 007400 533 ALGKGRL 539 (605)
Q Consensus 533 ~~g~~~~ 539 (605)
..|+.+-
T Consensus 508 ~~g~~Ec 514 (624)
T 3lvg_A 508 QEEKREC 514 (624)
T ss_dssp HHCSTHH
T ss_pred HcCchHH
Confidence 6666553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00087 Score=53.86 Aligned_cols=112 Identities=10% Similarity=-0.073 Sum_probs=92.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChH
Q 007400 397 HGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSD 472 (605)
Q Consensus 397 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 472 (605)
.+++++|+++|++..+.| .|+.. +...|...+.+++|..+|++.. +. -++.....|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa-~~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKAC-EL---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHH-cC---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999987 33433 7777888888899999999988 42 356788888999988 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 007400 473 QLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQN 517 (605)
Q Consensus 473 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 517 (605)
+|.++|++.....++.....|...|.. .+++++|...|+++.+..
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999987545788888999999988 899999999999999884
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0003 Score=52.61 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=34.1
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 462 IELLAQAGCSDQLMNQLEKMP--YEHDSY-LWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
+..+.+.|++++|...+++.. .+.+.. .+..++.++...|++++|+..|+++++.+|++...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344555566666665555541 123344 555555555556666666666666666655555444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0022 Score=59.85 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=29.2
Q ss_pred CcchHHHHHHHH--HHcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 007400 383 NSMLWNTMISAL--TQHGY---DEQAIRLFHDMVRSSVKPDK-ITLAVILNACT 430 (605)
Q Consensus 383 ~~~~~~~l~~~~--~~~g~---~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~ 430 (605)
+...|...+++. ...++ ..+|..+|++.++ +.|+. ..+..+..++.
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDI 244 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 566677766653 33333 4678999999998 67864 45555554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=5.1e-05 Score=73.98 Aligned_cols=103 Identities=15% Similarity=0.056 Sum_probs=73.0
Q ss_pred cCChHHHHHHHHhC--------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC---CCchHHHHHH
Q 007400 468 AGCSDQLMNQLEKM--------P-YEHD-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ-----NPQ---SSATHGLLSS 529 (605)
Q Consensus 468 ~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~---~~~~~~~l~~ 529 (605)
.|++++|+.++++. + ..|+ ..+++.++.+|..+|++++|+.+++++++. .|+ -...+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666553 1 1222 356788899999999999999999999875 343 3457788999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcchHHHHHHHH
Q 007400 530 IYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPMRDVLYSVLE 588 (605)
Q Consensus 530 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 588 (605)
+|..+|++++|+.++++..+-... .-...||...+++..|+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 999999999999999888653110 11236887777766554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00079 Score=50.27 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQNPQSSA-THGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
..+...|++++|...|+++++..|+++. .+..++.+|...|++++|+..++++.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444445555555555555555554444 455555555555555555555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0005 Score=51.62 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=45.5
Q ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 383 NSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
+...+..+...+...|++++|+..|++.++. .| +...+..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566777777777778888888888777773 44 35577777777777888888887777776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00082 Score=62.72 Aligned_cols=132 Identities=12% Similarity=0.081 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHh--c---cCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHh---cC-Ch-------HHHHHHH
Q 007400 416 KPDKITLAVILNACT--H---SGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQ---AG-CS-------DQLMNQL 478 (605)
Q Consensus 416 ~p~~~~~~~l~~~~~--~---~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~~-------~~A~~~~ 478 (605)
+.+...|..++++.. . ..+..+|..+|+++. ...|+ ...+..+..+|.- .+ .. ..+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al---~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV---QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 446666777666543 2 334688999999998 55787 4556555555431 11 11 1222222
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 479 EKMP-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 479 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
..+. .+.++.++..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2222 356788888888888888999999999999999998 67788899999999999999999999887654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.023 Score=43.54 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=109.0
Q ss_pred HHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHH
Q 007400 387 WNTMISA--LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIEL 464 (605)
Q Consensus 387 ~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 464 (605)
...|+.+ +.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+ |
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D---------- 70 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D---------- 70 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------
Confidence 3445544 45578899999999888763 255566666655555556566666666654221 2
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007400 465 LAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVR 544 (605)
Q Consensus 465 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 544 (605)
...+|++.....-+-.+. .+.......+.....+|.-++-.+++..++...|.++.....++.+|.+.|+..+|.+++
T Consensus 71 is~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 71 LDKCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp GGGCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHhhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 134677777777776665 455666777888899999999999999987776668999999999999999999999999
Q ss_pred HHHHhCCCc
Q 007400 545 QLINERQFK 553 (605)
Q Consensus 545 ~~~~~~~~~ 553 (605)
.++-++|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999999875
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=64.70 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=67.7
Q ss_pred ccCcHHHHHHHHHHchHhh--CCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHhC--------C-CCCC-HHHHHHHH
Q 007400 431 HSGLVQEGLTYFESMTHDL--GII---PN-QEHHACLIELLAQAGCSDQLMNQLEKM--------P-YEHD-SYLWNALH 494 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~ 494 (605)
..|++++|..++++..... -+. |+ ..+++.|+.+|...|++++|+.++++. + ..|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777765321 122 23 457788888888888888888887764 1 2333 44688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCCCCchHH
Q 007400 495 GVCRIHGNIDMGRKVVDQLIDQ-----NPQSSATHG 525 (605)
Q Consensus 495 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~ 525 (605)
..|..+|++++|+.+|+++++. .|+++.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999875 676665443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00069 Score=64.49 Aligned_cols=226 Identities=12% Similarity=0.093 Sum_probs=159.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHH
Q 007400 29 SKGQLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDAR 108 (605)
Q Consensus 29 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 108 (605)
..++..+|++.|- +. -|+..|..++.++.+.|.++.-.+.+....+...++. +=+.|+-+|++.++..+-+
T Consensus 66 ~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~---IDteLi~ayAk~~rL~elE 136 (624)
T 3lvg_A 66 QKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY---VETELIFALAKTNRLAELE 136 (624)
T ss_dssp TSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT---TTHHHHHHHHTSCSSSTTT
T ss_pred ccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc---cHHHHHHHHHhhCcHHHHH
Confidence 4566666665442 22 2566888999999999999988888776665543333 3467999999999876644
Q ss_pred HHhccCCCCCchHHHHHHHHHHccCChHHHHHHHhhcCC------------------------CCceeHHHHHHHHHhcC
Q 007400 109 KVFDKIPVKNLFSYNNMLSGYANLGMMKHARNLFDNMAE------------------------RDVVSWNTMIIGYAKSG 164 (605)
Q Consensus 109 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~~~~li~~~~~~~ 164 (605)
+.+ ..||..-...+.+-|...|.++.|.-+|..+.. .++.||-.+-.+|...+
T Consensus 137 efl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~ 213 (624)
T 3lvg_A 137 EFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 213 (624)
T ss_dssp STT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC
T ss_pred HHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch
Confidence 332 236666677888888899999888888887641 37788999999999998
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 007400 165 AVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFD 244 (605)
Q Consensus 165 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 244 (605)
.+.-|.-.--.+. ..+.-...++..|-..|.+++-..+++.-+.. -......|+-|.-.|++- +.++..+.++
T Consensus 214 EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 214 EFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp TTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 8887765544333 22223345666778888888888888776532 234677888888888875 5666666665
Q ss_pred hcCCC-----------CcchHHHHHHHHHhcCChHHHHHH
Q 007400 245 ETDAR-----------DVLTWTTMVSGYAKLGDMESASKL 273 (605)
Q Consensus 245 ~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~~ 273 (605)
-.-.+ ....|..++-.|..-..++.|...
T Consensus 287 lf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 287 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp TSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 54433 456799999999999999987543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=50.15 Aligned_cols=65 Identities=9% Similarity=-0.123 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 485 HDSYLWNALHGVCRIHGNIDM---GRKVVDQLIDQN-P-QSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
++..+-..+++++.+..+... ++.+++.+++.. | ......+.|+-.+.+.|+|++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455555555555443333 555555555543 3 2344555566666666666666666665554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0095 Score=46.46 Aligned_cols=91 Identities=7% Similarity=-0.003 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCcee
Q 007400 484 EHDSYLWNALHGVCRIHGN---IDMGRKVVDQLIDQNPQ-SSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAIS 559 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s 559 (605)
.++..+-..+++++.+..+ ..+++.+++.+++..|. .....+.|+-.+.+.|+|++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4666666667777766553 45677777777777663 4456667788888888888888888877663
Q ss_pred EEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHhhCCCC
Q 007400 560 WIEIENKVHAFSVSDSLHPMRDVLYSVLEQLAGQMGEDAPS 600 (605)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 600 (605)
.|+.+++..+-..+..++..+|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 555666666666666667777653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0029 Score=61.73 Aligned_cols=100 Identities=9% Similarity=0.009 Sum_probs=68.6
Q ss_pred HHHhccCcHHHHHHHHHHchHhh--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC--------C-CCCC-HHHH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDL--GIIPN----QEHHACLIELLAQAGCSDQLMNQLEKM--------P-YEHD-SYLW 490 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~ 490 (605)
..+...|++++|..++++..... -+.|+ ..+++.|+.+|...|++++|+.++++. + ..|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445677777777777665221 12222 456777778888888888888777654 1 2233 4467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCchHHH
Q 007400 491 NALHGVCRIHGNIDMGRKVVDQLIDQ-----NPQSSATHGL 526 (605)
Q Consensus 491 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 526 (605)
+.|+..|..+|++++|+.+++++++. .|+++.+-..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88999999999999999999999875 6766655443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.005 Score=46.38 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP---------YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 526 (605)
.-...|+..+.+.|++..|...++... ..+...++..++.++.+.|+++.|..+++++++..|++..+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455556666666666666555431 12346788889999999999999999999999999988777555
Q ss_pred HH
Q 007400 527 LS 528 (605)
Q Consensus 527 l~ 528 (605)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0042 Score=49.65 Aligned_cols=90 Identities=14% Similarity=0.014 Sum_probs=59.9
Q ss_pred HHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 007400 435 VQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAG---CSDQLMNQLEKMP-YE-H--DSYLWNALHGVCRIHGNIDMGR 507 (605)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~g~~~~A~ 507 (605)
...+.+.|.+.. ..+. ++..+...+..++.+.+ +.++++.++++.- .. | ....+..++-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~-~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHH-HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHH-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 344455555444 2122 55666666666676666 4456666666542 11 3 3456777888999999999999
Q ss_pred HHHHHHHhcCCCCCchHHH
Q 007400 508 KVVDQLIDQNPQSSATHGL 526 (605)
Q Consensus 508 ~~~~~~~~~~p~~~~~~~~ 526 (605)
++++++++.+|+|..+...
T Consensus 92 ~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 9999999999987765554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.043 Score=58.99 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=23.3
Q ss_pred HhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 363 SKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
...|+++.|.++.+.+. +...|..+...+.+.|+++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555544332 3345555555555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.26 Score=52.88 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHH
Q 007400 224 SSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALE 303 (605)
Q Consensus 224 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 303 (605)
..++..+.+.|..+.|.++.+.- ..-.......|++++|.++.+.+ .+...|..+...+.+.|+++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHH
Confidence 44555556666666666544321 11123344567777777776655 345677888888888888888888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 007400 304 LFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFD 376 (605)
Q Consensus 304 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 376 (605)
.|.++.. |..+...+...|+.+....+-+.+...| -++....+|.+.|++++|.++|.
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 8877653 3334444444555555544444444433 12333344555566666555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0051 Score=54.90 Aligned_cols=85 Identities=9% Similarity=0.074 Sum_probs=67.6
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCchHH
Q 007400 472 DQLMNQLEKM-PYEHD---SYLWNALHGVCRI-----HGNIDMGRKVVDQLIDQNPQS-SATHGLLSSIYSAL-GKGRLV 540 (605)
Q Consensus 472 ~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~a 540 (605)
..|...+++. ...|+ ...|..++..|.. -|+.++|.++|+++++++|+. ..++..+++.++.. |+++++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4555556554 23454 5678888888887 499999999999999999974 99999999999885 999999
Q ss_pred HHHHHHHHhCCCcCCC
Q 007400 541 EKVRQLINERQFKKEQ 556 (605)
Q Consensus 541 ~~~~~~~~~~~~~~~~ 556 (605)
.+.+++.........|
T Consensus 260 ~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 260 DEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHcCCCCCCC
Confidence 9999999887655334
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.018 Score=42.06 Aligned_cols=67 Identities=13% Similarity=-0.031 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 453 PNQEHHACLIELLAQAGC---SDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 453 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.++..+..+..++...++ .++|..++++.. .+.++..+..++..+.+.|++++|+..|+++++..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 456677777777755444 688888888762 3456788888899999999999999999999999987
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.01 Score=45.63 Aligned_cols=66 Identities=9% Similarity=-0.017 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 484 EHDSYLWNALHGVCRIHGN---IDMGRKVVDQLIDQNPQ-SSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 484 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.|+..+-..+++++.+..+ ..+++.+++.+++..|. ....+..|+..+.+.|++++|.++.+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4666666667777766553 45677778777777763 456677788888888888888888887765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=1 Score=45.88 Aligned_cols=114 Identities=10% Similarity=0.071 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKPDKI----TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
.+.+.|...+....+.. ..+.. ....++......+...++...+.... . ..++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-M--RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-H--TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc-c--cCCChHHHHHHHHHHHHCCCHHH
Confidence 47788888888876533 22332 33334444455553456666666654 2 22343334444455567799999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 474 LMNQLEKMPYEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 474 A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
|...|+.++..+ ......=++.++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999886332 222223355577778999999999998875
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.37 E-value=1.3 Score=46.89 Aligned_cols=261 Identities=11% Similarity=0.051 Sum_probs=125.4
Q ss_pred HHhcCChHHHHHHHhhcCCC----Ccch--HHHHHHHHHhcCChHHHHHHHhhCCC-CC----------hhhHHHHHHHH
Q 007400 230 YAKCGELSDARRLFDETDAR----DVLT--WTTMVSGYAKLGDMESASKLFNEMPE-KN----------PVSWTTLIAGY 292 (605)
Q Consensus 230 ~~~~g~~~~a~~~~~~~~~~----~~~~--~~~li~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~l~~~~ 292 (605)
....|+.++++.++...... +..+ -..+.-+....|..+++..++..... .+ +..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 55677777788877776642 2221 22223334455555556665554332 12 11122233333
Q ss_pred HhCCC-hHHHHHHHHHHHHCCCCCChHHHH--HHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHH--HHHHHhcCC
Q 007400 293 TRNGL-GQKALELFTRMMILRIRPNQHTFS--SCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSL--IDMYSKCGC 367 (605)
Q Consensus 293 ~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 367 (605)
+-.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+.+.. +..+...+ .-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33332 2455666666554221 1111111 22233445567676677776666532 22233323 333445677
Q ss_pred hHHHHHHHHhcCCCCCcch-HH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 007400 368 LNDGRQVFDLTDNKENSML-WN---TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFE 443 (605)
Q Consensus 368 ~~~A~~~~~~~~~~~~~~~-~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 443 (605)
.+.+..+.+.+....++.. |. ++.-+|+..|+......+++.+.... ..+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 7777666666553323332 22 23345667778777777887777631 1122222223333444555555666665
Q ss_pred HchHhhCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007400 444 SMTHDLGIIPNQEHHACLIELLAQAGCS-DQLMNQLEKMPYEHDSYLWNALHGVC 497 (605)
Q Consensus 444 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~ 497 (605)
.+. + ...|....-..+.-+....|.. .++.+.+..+...+|..+...-+.++
T Consensus 619 ~L~-~-~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 619 LLS-K-SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp TGG-G-CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHH-h-cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 554 2 2234443333333344444433 56777777775455655554433333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.079 Score=40.61 Aligned_cols=92 Identities=15% Similarity=0.027 Sum_probs=62.9
Q ss_pred cHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCHHHH
Q 007400 434 LVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ---LMNQLEKMPYE--H--DSYLWNALHGVCRIHGNIDMG 506 (605)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A 506 (605)
....+.+.|.... ..+. |+..+-..+.+++.+.....+ ++.++++.-.. | .......++.++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~-~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHH-HHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHh-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3444555555544 2233 666666677777777776655 77777765322 2 234556678899999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHH
Q 007400 507 RKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 507 ~~~~~~~~~~~p~~~~~~~~l 527 (605)
+..++.+++..|+|..+....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999887765543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.026 Score=42.29 Aligned_cols=66 Identities=12% Similarity=-0.071 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 485 HDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQN-------PQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+..-...++..+...|+++.|...|+++++.. +....++..|+.++.+.|++++|..+++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345556678999999999999999999999862 234567889999999999999999999998764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.37 Score=39.52 Aligned_cols=98 Identities=10% Similarity=0.147 Sum_probs=47.0
Q ss_pred CChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHH
Q 007400 265 GDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344 (605)
Q Consensus 265 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 344 (605)
|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+....+-+...
T Consensus 19 g~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~ 87 (177)
T 3mkq_B 19 GNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQ 87 (177)
T ss_dssp TCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333443333 2444566666666666666666666655432 2233333444455544444444443
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 007400 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD 379 (605)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 379 (605)
..| -++.....+.-.|+++++.++|.+..
T Consensus 88 ~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 88 TRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333 12333444555566666666655443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.041 Score=57.01 Aligned_cols=57 Identities=7% Similarity=-0.108 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN 548 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 548 (605)
.-+..|...|+++.|+++.++++...|.+..+|..|+.+|...|+|+.|+-.+.-+.
T Consensus 342 ~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 342 IQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345667789999999999999999999999999999999999999999999998773
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.074 Score=41.82 Aligned_cols=100 Identities=6% Similarity=0.145 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHhccCcH------HHHHHHHHHchHhhCCCCCHH-HHHHHHH------HHHhcCChHHHHHHHHhCC--
Q 007400 418 DKITLAVILNACTHSGLV------QEGLTYFESMTHDLGIIPNQE-HHACLIE------LLAQAGCSDQLMNQLEKMP-- 482 (605)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~-- 482 (605)
|..+|-..+....+.|++ ++.+++|+++. . .++|+.. .+...+. .+...+++++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi-a-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI-E-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH-H-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH-H-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455777777766666777 67777777766 2 4455421 1111111 1123355666666665541
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 483 YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 483 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
.+.-..+|...+..-.++|+.+.|++++.+++.+.|.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 1122555555555556666666666666666666553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.62 Score=41.71 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=84.6
Q ss_pred hcCChhHHHHHhccCCCCCc--hHHHHHHH-HHHcc--C------ChHHHHHHHhhcCC--CC---ceeHHHHHHHHHh-
Q 007400 100 KCGSDVDARKVFDKIPVKNL--FSYNNMLS-GYANL--G------MMKHARNLFDNMAE--RD---VVSWNTMIIGYAK- 162 (605)
Q Consensus 100 ~~g~~~~a~~~~~~~~~~~~--~~~~~li~-~~~~~--~------~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~- 162 (605)
+.|+..+..+.+.+....++ ..|..++. .++.. | ....|...+++..+ |+ ...|..|...|.+
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence 34555555666666654443 34555544 23332 3 34566666776654 43 4478888888888
Q ss_pred ----cCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHhcc-CChHHHHHHHHHHHHhCCC--CChhHHHHH
Q 007400 163 ----SGAVEEGLKFYKVLRRFSISC--NEFSFAGILTICVKL-EELKLTRQVHGQVLVTGFL--SNVVISSSI 226 (605)
Q Consensus 163 ----~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 226 (605)
-|+.++|.+.|++..+ +.| +..++......++.. |+.+.+.+.+++.+...+. |+....+.+
T Consensus 213 Pp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 4899999999999988 445 477788888888774 8899999999999888776 665555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.1 Score=41.10 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.++|.++|+.+++....-+..|...+..-.++|+...|.+++......
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 44555555555554442222344444444444555555555555444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.40 E-value=1.7 Score=35.56 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=25.5
Q ss_pred HHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 361 MYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
.....|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 334455555555555444 13445666666666666666666655544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.89 E-value=3.8 Score=37.58 Aligned_cols=167 Identities=11% Similarity=0.067 Sum_probs=89.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHH----HHHHhCCCCCChhhHHHHHHHHh
Q 007400 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFY----KVLRRFSISCNEFSFAGILTICV 196 (605)
Q Consensus 121 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~ 196 (605)
.|.++..-|.+.+++++|++++-. -...+.+.|+...+.++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455555666666777777666543 234455566666555554 44456778888887777777776
Q ss_pred ccCChH-----HHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHH
Q 007400 197 KLEELK-----LTRQVHGQVLVTG--FLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMES 269 (605)
Q Consensus 197 ~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 269 (605)
....-+ -..+...+..+.| ..-|......+...|.+.+++.+|+..|---....+..+..++..+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 554321 1122233333344 333566677777888888888888777632111122455555544443332111
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007400 270 ASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMM 309 (605)
Q Consensus 270 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 309 (605)
+ +.. ....+--|...++...|..+++...
T Consensus 186 ~----------dlf-iaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 A----------PLY-CARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H----------HHH-HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H----------HHH-HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 111 1222334555666776666555544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.59 Score=37.63 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-------HHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSS-VKPDK-------ITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.++..-++.+...|.++.|+-+...+.... ..|+. .++..+.+++...+++.+|...|+++.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344444555566666666665555433210 11221 255556666666666666666666654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.54 E-value=2 Score=33.14 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
......+..+...|+-++-.+++..+... -+|++.....+..+|.+.|+..+|.+++.++-
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33444555666666666666666664432 35566666666666666666666666666665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.51 E-value=1.3 Score=34.65 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 452 IPNQEHHACLIELLAQAGCSD---QLMNQLEKMP-YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.|+..+--.+.+++.+....+ +++.++++.- ..| .......++-++.+.|++++|+++.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 566777677777777777544 4556666541 123 3445666788999999999999999999999998766544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.58 Score=37.70 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=22.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 522 ATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
+.-+.++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 46678999999999999999999854
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=93.21 E-value=3.6 Score=35.10 Aligned_cols=72 Identities=6% Similarity=0.061 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007400 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330 (605)
Q Consensus 255 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 330 (605)
...+.++.+.|..+....+...+..++...-...+.++.+.+. ..+...+..+.. .++...-...+.++...
T Consensus 130 ~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 130 IAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhc
Confidence 3333333333333322233333334455554555555555554 344444444444 23444444444444433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.83 E-value=5.5 Score=36.27 Aligned_cols=131 Identities=11% Similarity=0.192 Sum_probs=74.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHH----HHHHHhCCCCCChhhHHHHHHHHh
Q 007400 121 SYNNMLSGYANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKF----YKVLRRFSISCNEFSFAGILTICV 196 (605)
Q Consensus 121 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 196 (605)
.|.++..-|.+++++++|.+++.. -...+.+.|+...+.++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455566666666677777666543 23445566776666554 444556778888887777777765
Q ss_pred ccCC-----hHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 007400 197 KLEE-----LKLTRQVHGQVLVTGF--LSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262 (605)
Q Consensus 197 ~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 262 (605)
.... ..-..+...+..+.|. .-+...+..+...|.+.|++.+|+..|---...++..+..++.-+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 5321 1222233333333332 2356667777777788888877776665222123444444444433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.29 Score=46.93 Aligned_cols=68 Identities=9% Similarity=-0.011 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCcCCCc
Q 007400 490 WNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLIN-----ERQFKKEQA 557 (605)
Q Consensus 490 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ 557 (605)
...++.++...|+++++...+..++..+|-+...+..++.+|.+.|+..+|+++|+.+. +.|+.|.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34466777888999999999999999999999999999999999999999999988874 347766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.99 Score=34.75 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 452 IPNQEHHACLIELLAQAGCSD---QLMNQLEKMP-YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.|++.+--.+.+++.+..+.+ +++.++++.- ..| ....+..++-++.+.|++++|++..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 455666666777777776543 4556665541 123 3456667888899999999999999999999998776554
Q ss_pred H
Q 007400 526 L 526 (605)
Q Consensus 526 ~ 526 (605)
.
T Consensus 117 L 117 (134)
T 3o48_A 117 L 117 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.64 E-value=10 Score=36.80 Aligned_cols=185 Identities=8% Similarity=0.040 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHHH-----CCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHH----HHHHhcC
Q 007400 296 GLGQKALELFTRMMI-----LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLI----DMYSKCG 366 (605)
Q Consensus 296 g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g 366 (605)
|+++.|++.+..+.+ .+...+......++..|...++++...+.+..+.+..-.. ......++ .......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 455566555544443 2233444555666666666777766666555444322111 11222222 2222233
Q ss_pred ChH--HHHHHHHhcCCCCC---------cchHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHh
Q 007400 367 CLN--DGRQVFDLTDNKEN---------SMLWNTMISALTQHGYDEQAIRLFHDMVRS--SVKPDK---ITLAVILNACT 430 (605)
Q Consensus 367 ~~~--~A~~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~---~~~~~l~~~~~ 430 (605)
..+ .-..+.+.+...-+ ......|...+...|++.+|..++..+... |..+.. ..+..-++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222 22333433322101 112355778888999999999999988643 222111 36667778899
Q ss_pred ccCcHHHHHHHHHHchHhh---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 431 HSGLVQEGLTYFESMTHDL---GIIPN--QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 431 ~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
..+++.+|..++.++.... ...|+ ...+...+..+...+++.+|...|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999998874211 22232 346677788888899999888777654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=91.18 E-value=6.1 Score=33.24 Aligned_cols=60 Identities=8% Similarity=0.141 Sum_probs=26.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 310 (605)
+..+-...+.++.+.+..+....+...+..++...-...+.++...|. .++...+..+..
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 333333334444444433333333333444455555555555555554 334444444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.97 E-value=9.1 Score=34.85 Aligned_cols=165 Identities=8% Similarity=0.066 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH----HHHHHHCCCCCChHHHHHHHHHHhcc
Q 007400 255 TTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALEL----FTRMMILRIRPNQHTFSSCLCACASI 330 (605)
Q Consensus 255 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~ 330 (605)
.++..-|.+.+++++|.+++..- ...+.+.|+...|.++ ++-..+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 34455566666666666665432 3445667776665553 55556678888888888887776553
Q ss_pred cchH-HHHHHHHHHH----HcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHc---CCH
Q 007400 331 VSLK-HGKQVHGFLI----RTN--FRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQH---GYD 400 (605)
Q Consensus 331 ~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~ 400 (605)
..-+ .-..+++.++ +.| ..-++.....+...|.+.|++.+|+..|-.-... +...+..++.-+... |..
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-SMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc-cHHHHHHHHHHHHHhcCCCCc
Confidence 2111 1223333333 332 2246778888888999999998888877522211 233343333333222 222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
.++- .. ....+-.|.-.|+...|..+++...
T Consensus 185 ~e~d--------------lf-~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVA--------------EF-FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHH--------------HH-HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred chHH--------------HH-HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2211 11 1122223455678888888887765
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.30 E-value=7.2 Score=37.97 Aligned_cols=186 Identities=11% Similarity=0.049 Sum_probs=114.5
Q ss_pred cchHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC--CcchHHHHHHH----HHHcCC
Q 007400 331 VSLKHGKQVHGFLIRT-----NFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKE--NSMLWNTMISA----LTQHGY 399 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~----~~~~g~ 399 (605)
|+++.|.+.+..+.+. +...+......++..+...|+++...+.+..+..+- ....-..+++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6777787776665542 234456677889999999999999877776554331 11122233332 222333
Q ss_pred HHHH--HHHHHHHHH--CC-CCC---CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhC-CCCC---HHHHHHHHHHHHh
Q 007400 400 DEQA--IRLFHDMVR--SS-VKP---DKITLAVILNACTHSGLVQEGLTYFESMTHDLG-IIPN---QEHHACLIELLAQ 467 (605)
Q Consensus 400 ~~~a--~~~~~~m~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~---~~~~~~l~~~~~~ 467 (605)
.+.. ..+.+.... .| +-. .......|...+...|++.+|..++..+..+.. ..+. ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3321 112111110 11 111 112345677888899999999999999875432 2222 4577778888999
Q ss_pred cCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007400 468 AGCSDQLMNQLEKMP-----YEHD----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQ 516 (605)
Q Consensus 468 ~g~~~~A~~~~~~~~-----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 516 (605)
.+++.+|..++.++. ..+. ...+...+..+...+++.+|-..|..+.+.
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999999998888752 1222 234455666777788888888888777653
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=90.20 E-value=7.9 Score=32.87 Aligned_cols=132 Identities=12% Similarity=0.116 Sum_probs=68.2
Q ss_pred HHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 007400 227 VDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFT 306 (605)
Q Consensus 227 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 306 (605)
+.++.+.|+.+....+.+.+..++...-...+.++.+.++.+....+...+..++...-...+.++.+.|..+ +...+.
T Consensus 71 ~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~ 149 (211)
T 3ltm_A 71 ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLI 149 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHH
Confidence 3333333433333333333333444444445555555555444444555555667766666777777776643 444555
Q ss_pred HHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 007400 307 RMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366 (605)
Q Consensus 307 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (605)
.+.. .++...-...+.++...+. ..+...+..+.+. ++..+-...+.++.+.+
T Consensus 150 ~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 150 KALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 5543 4566666666777777665 3444555555543 34445555555555443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.30 E-value=11 Score=35.79 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=24.0
Q ss_pred HHHHHhccCcHHHHHHHHHHchHhhCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 425 ILNACTHSGLVQEGLTYFESMTHDLGIIPN----QEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 425 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
++..|...|++.+|..++.++.++..-..+ .+++..-++.|...|++.++...+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444555555555555444432211111 22333444445555555555544433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.83 E-value=5.1 Score=28.77 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHH
Q 007400 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFS 321 (605)
Q Consensus 259 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 321 (605)
..+.+.|++++|..+.+....||...|.+|.. .+.|..+++...+.++...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34566777777778888888888888776654 47788888888887777766 45444443
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=88.79 E-value=9.7 Score=31.96 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=69.2
Q ss_pred HHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 007400 228 DAYAKCGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTR 307 (605)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 307 (605)
.++.+.|..+....+.+.+..+++..-...+.++.+.++.+....+...+..++...-...+.++.+.+.. .+...+..
T Consensus 67 ~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~ 145 (201)
T 3ltj_A 67 DALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIK 145 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHH
Confidence 33333343333333333333444444445555555555554444555555667776666777777777764 34445555
Q ss_pred HHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 007400 308 MMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366 (605)
Q Consensus 308 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (605)
+.. .++...-...+.++...|.. .+...+..+.+. ++..+-...+.++.+.+
T Consensus 146 ~l~---d~~~~vr~~A~~aL~~~~~~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 146 ALK---DEDGWVRQSAADALGEIGGE-RVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HTT---CSSHHHHHHHHHHHHHHCSH-HHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred HHc---CCCHHHHHHHHHHHHHhCch-hHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 553 35666666677777777654 344455555443 34444445555554433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.61 E-value=15 Score=33.79 Aligned_cols=139 Identities=11% Similarity=0.028 Sum_probs=79.2
Q ss_pred HHHHHccCCh---HHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChH
Q 007400 126 LSGYANLGMM---KHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELK 202 (605)
Q Consensus 126 i~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 202 (605)
+......|++ =+|.+. |.++..=|.+++++++|++++..--. .+.+.|+..
T Consensus 19 l~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~ 72 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGG 72 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHH
T ss_pred HHHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcc
Confidence 3455667777 566544 44566678889999999998755322 222334443
Q ss_pred H----HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH--------HHHHHHhhc---CCCCcchHHHHHHHHHhcCCh
Q 007400 203 L----TRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELS--------DARRLFDET---DARDVLTWTTMVSGYAKLGDM 267 (605)
Q Consensus 203 ~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~ 267 (605)
. +.-+++...+.+.++|......|+..+.....-+ +|...-.+. ..-|+.....+...|.+.+++
T Consensus 73 sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~ 152 (336)
T 3lpz_A 73 SGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEF 152 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCH
Confidence 3 3334466666788888877777777776655422 122221211 112555666666677777777
Q ss_pred HHHHHHHhhCCCCChhhHHHHHH
Q 007400 268 ESASKLFNEMPEKNPVSWTTLIA 290 (605)
Q Consensus 268 ~~A~~~~~~~~~~~~~~~~~l~~ 290 (605)
.+|+..|-.-..+++..+..++.
T Consensus 153 ~~Ae~H~ilg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 153 EAAEKHLVLGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHHHTTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHH
Confidence 77777764322222344444433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.45 E-value=7.3 Score=40.50 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=35.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHc
Q 007400 392 SALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESM 445 (605)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 445 (605)
..+...|+++-|+++-++.+. ..|+ ..+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345556777777777777776 4564 447777777777777777777776665
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=88.39 E-value=5.5 Score=28.65 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=39.5
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHH
Q 007400 259 SGYAKLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTF 320 (605)
Q Consensus 259 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 320 (605)
..+.+.|++++|..+.+...-||...|.+|.. .+.|..+++...+.++...| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34556677777777777777777777766654 46677777777777776665 4444444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=3 Score=39.77 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchH----hhCCCCCHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHH 458 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 458 (605)
...++..+...|++++|+..+..+.. ..| +...+..++.++...|+..+|++.|+++.+ +.|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34456677788999999988888887 345 677899999999999999999998888653 45888887653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=87.45 E-value=6.2 Score=34.76 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=74.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCCh
Q 007400 393 ALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCS 471 (605)
Q Consensus 393 ~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 471 (605)
.+.+.|+.++|++.+..-++. .| |...-..++..++-.|++++|..-++... .+.|+...-..+.+.+.++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHH---
Confidence 455678888888888887775 44 66677777888888888888888888776 4455533222222222111
Q ss_pred HHHH-HHHHhC--C--CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 472 DQLM-NQLEKM--P--YEHDSYLWNALHGVC--RIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 472 ~~A~-~~~~~~--~--~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
+... ++|..- + ......-...++.+. ...|+.++|.++-.++.+..|..+....
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 1222 122211 1 111222223344443 4569999999999999999887666443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.83 E-value=8.6 Score=42.78 Aligned_cols=60 Identities=8% Similarity=-0.076 Sum_probs=25.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007400 422 LAVILNACTHSGLVQEGLTYFESMTHDLGIIPN---QEHHACLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 422 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
|..++..+.+.+.++.+.++-+.+....+-.++ ...|..+.+.+...|++++|...+-.+
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 444444444455555555444444322111111 113444555555555555555544433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.38 E-value=11 Score=41.98 Aligned_cols=143 Identities=9% Similarity=-0.020 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhc
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQA 468 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 468 (605)
.++..+...+..+-+.++.. . ++-++..-..+..++...|++++|..+|++.. . ++..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~-~----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~-~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIG-W----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-L-VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHH-H----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-C-SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhh-h----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-h-hhcccchhh----------
Confidence 34555555666655544322 1 22344444455566667777777777776653 1 222211000
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHhcCCchHHHH
Q 007400 469 GCSDQLMNQLEKMP-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-----THGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 469 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~ 542 (605)
........+..... ...-...|..++..+.+++.++.+.++.+.+++..+.+.. .|..+...+...|++++|-.
T Consensus 880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 00011111111111 1123455677778888888888888888888876432322 46677888888899998877
Q ss_pred HHHHHH
Q 007400 543 VRQLIN 548 (605)
Q Consensus 543 ~~~~~~ 548 (605)
.+-.+.
T Consensus 960 aL~~~p 965 (1139)
T 4fhn_B 960 ALMVLS 965 (1139)
T ss_dssp HHHHHH
T ss_pred HHHhCC
Confidence 776554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.74 E-value=8.2 Score=27.93 Aligned_cols=80 Identities=10% Similarity=0.112 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHH
Q 007400 16 PNNCLIQSFLSLISK-G-QLSEAISSLDLLAQRGIRLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNH 93 (605)
Q Consensus 16 ~~~~~~~~~~~~~~~-g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 93 (605)
++..+-.-+..+... . +.-+...-+..+...++-|++......+++|.+-.++..|.++++.+...-... .. +|..
T Consensus 7 t~eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~-iY~~ 84 (109)
T 1v54_E 7 TDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KE-IYPY 84 (109)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TT-HHHH
T ss_pred cHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hh-hHHH
Confidence 444555555544333 3 556677777888888899999999999999999999999999999988765444 33 6777
Q ss_pred HHHH
Q 007400 94 LISM 97 (605)
Q Consensus 94 l~~~ 97 (605)
+++-
T Consensus 85 ~lqE 88 (109)
T 1v54_E 85 VIQE 88 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.60 E-value=4.9 Score=29.08 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
+.-+..+-+..+....+.|++......+.+|.+.+++..|.++++-+..+.+-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566777777777889999999999999999999999999999887544333 445665553
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.00 E-value=2.1 Score=37.63 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=44.4
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 463 ELLAQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 463 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
..+.+.|++++|++.+..- . .+.|......+...++-.|++++|..-++.+.+++|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3456788888888877653 2 34577777788888888899999999998888888843
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.88 E-value=49 Score=35.34 Aligned_cols=251 Identities=11% Similarity=0.014 Sum_probs=135.8
Q ss_pred HHhcCChHHHHHHHhhCCC----CChh--hHHHHHHHHHhCCChHHHHHHHHHHHHCCC--C-----CChHHHHHHHHHH
Q 007400 261 YAKLGDMESASKLFNEMPE----KNPV--SWTTLIAGYTRNGLGQKALELFTRMMILRI--R-----PNQHTFSSCLCAC 327 (605)
Q Consensus 261 ~~~~~~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~-----p~~~~~~~ll~~~ 327 (605)
....|+.++++.+++.... .+.. .-..+.-+....|..+++..++.......- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 5567888888888888764 2222 233344556667776778887777664321 0 1111122222233
Q ss_pred hcccc-hHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHH--HHHHHHHcCCHHH
Q 007400 328 ASIVS-LKHGKQVHGFLIRTNFRSNT--IVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNT--MISALTQHGYDEQ 402 (605)
Q Consensus 328 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~ 402 (605)
...|. -+++...+..++...- ... ..--+|...+...|+.+....++..+.+..+...... +.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 33332 2445555555554321 111 1222344455677887777777775443323333333 3334556788888
Q ss_pred HHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 007400 403 AIRLFHDMVRSSVKPDKI--TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEK 480 (605)
Q Consensus 403 a~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 480 (605)
+..+++.+... ..|... ....+.-+|+..|+......++..+..+ ...+..-...+.-++...|+.+.+..+++.
T Consensus 543 ~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 88888888763 122222 2234455778889987777788888732 223333334444455557777767777765
Q ss_pred CCCCCCHHHHHHHHHHH--HhcCCH-HHHHHHHHHHHh
Q 007400 481 MPYEHDSYLWNALHGVC--RIHGNI-DMGRKVVDQLID 515 (605)
Q Consensus 481 ~~~~~~~~~~~~l~~~~--~~~g~~-~~A~~~~~~~~~ 515 (605)
+....|+.+......++ ...|+. .++...+.++..
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 54334555554433333 333332 567777777753
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.91 E-value=21 Score=29.76 Aligned_cols=51 Identities=10% Similarity=-0.000 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 500 HGNIDMGRKVVDQLIDQ--NPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 500 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++...+..+|..+... .-..+..|..++..+...|++.+|.++|+.-.++
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34466777777777665 3334556667777777777777777777765544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 605 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-06
Identities = 38/351 (10%), Positives = 103/351 (29%), Gaps = 47/351 (13%)
Query: 229 AYAKCGELSDARRLFD---ETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEKNP--- 282
+ G+ A R + + + S + + ++ ++ ++NP
Sbjct: 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67
Query: 283 --------------------------------VSWTTLIAGYTRNGLGQKALELFTRMMI 310
+ G + +
Sbjct: 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLND 370
L+ P+ + S L + + + + S+L +++ G +
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187
Query: 371 GRQVFD--LTDNKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNA 428
F+ +T + + + + L + ++A+ + + S + +
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-HGNLACV 246
Query: 429 CTHSGLVQEGLTYFESMTHDLGIIPNQ-EHHACLIELLAQAGCSDQLMNQLEK--MPYEH 485
GL+ + + + + P+ + + L L + G + +
Sbjct: 247 YYEQGLIDLAIDTYRRA---IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536
+ N L + R GNI+ ++ + ++ P+ +A H L+S+ GK
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.17 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.81 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.78 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.74 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.73 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.7 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.65 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.52 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.5 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.48 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.44 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.33 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.26 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.19 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.01 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.01 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.92 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.83 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.81 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.78 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.34 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.29 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.02 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.99 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.76 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.15 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.85 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.48 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.58 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.35 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.3e-22 Score=195.92 Aligned_cols=372 Identities=11% Similarity=0.086 Sum_probs=278.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 007400 157 IIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGEL 236 (605)
Q Consensus 157 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 236 (605)
...+.+.|++++|.+.|+++.+.. +-+...+..+...+...|++++|...++.+++..+. +..++..+..+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 345566677777777777766532 123456666666677777777777777777666432 456667777777777777
Q ss_pred HHHHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007400 237 SDARRLFDETDAR---DVLTWTTMVSGYAKLGDMESASKLFNEMP---EKNPVSWTTLIAGYTRNGLGQKALELFTRMMI 310 (605)
Q Consensus 237 ~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 310 (605)
++|...+...... +...+..........+....+........ .................+....+...+.....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 7777777665543 22233333333333444433333333222 23444555566667777888888888887776
Q ss_pred CCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCCcchHH
Q 007400 311 LRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN--KENSMLWN 388 (605)
Q Consensus 311 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 388 (605)
.. +.+...+..+...+...|+++.|...+....+.. +.+...+..+...+...|++++|...++.... +.+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence 42 3455677777888889999999999999988875 55677888899999999999999999987552 23667788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ 467 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 467 (605)
.+...+...|++++|+..|++.++ +.|+ ..++..+..++...|++++|...++.... ..+.+...+..+..++.+
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHH
Confidence 889999999999999999999998 4564 56889999999999999999999999873 234457788899999999
Q ss_pred cCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 468 AGCSDQLMNQLEKM-PY-EHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 468 ~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
.|++++|++.+++. .. +.+..++..++.++...|++++|...|+++++++|+++.++..++.+|.+.||
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999985 33 34577899999999999999999999999999999999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8e-22 Score=192.00 Aligned_cols=372 Identities=12% Similarity=0.094 Sum_probs=303.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCh
Q 007400 191 ILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDAR---DVLTWTTMVSGYAKLGDM 267 (605)
Q Consensus 191 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~ 267 (605)
+...+.+.|++++|.+.++++++..+ -+..++..+..+|.+.|++++|...|++..+. +..+|..+...|...|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 34556788999999999999998764 36788899999999999999999999987643 567888999999999999
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHH
Q 007400 268 ESASKLFNEMPE---KNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLI 344 (605)
Q Consensus 268 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 344 (605)
++|...+..... .+...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999988764 244455555566666677777776666665543 3344445555666677788888888888877
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007400 345 RTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITL 422 (605)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 422 (605)
... +.+...+..+...+...|+++.|...++... .+.+..+|..+...+...|++++|+..+++....+ ..+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 765 5567788889999999999999999998654 22266788999999999999999999999998853 3356788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRI 499 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 499 (605)
..+..++...|++++|...|+++. ...|+ ..++..++.++...|++++|.+.++... .+.+...+..++..+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 889999999999999999999988 34565 7789999999999999999999998762 45678889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCCCCcc
Q 007400 500 HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFKKEQAISWIEIENKVHAFSVSDSLHPM 579 (605)
Q Consensus 500 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 579 (605)
.|++++|+..|+++++..|+++.++..++.+|...|++++|+..|+++.+. +|+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--------------------------~P~ 371 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------------------------SPT 371 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------------------------CTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCC
Confidence 999999999999999999999999999999999999999999999988753 445
Q ss_pred hHHHHHHHHHHHHHHh
Q 007400 580 RDVLYSVLEQLAGQMG 595 (605)
Q Consensus 580 ~~~~~~~l~~~~~~~~ 595 (605)
..+++..|..+..+|+
T Consensus 372 ~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 372 FADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 5556666666666554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.1e-14 Score=137.15 Aligned_cols=242 Identities=11% Similarity=-0.030 Sum_probs=164.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 007400 287 TLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG 366 (605)
Q Consensus 287 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (605)
.....+.+.|++++|+..|+++.+.. +-+..++..+..++...|+++.|...+.++.+.. +.+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45666778888888888888877753 3345567777777777777777777777777654 344556666666666666
Q ss_pred ChHHHHHHHHhcCC-CCCcchH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007400 367 CLNDGRQVFDLTDN-KENSMLW-NTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444 (605)
Q Consensus 367 ~~~~A~~~~~~~~~-~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 444 (605)
++++|.+.++.... .|+.... ....... ...+.......+..+...+.+.+|...+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 66666666654321 1111100 0000000 000000011112223344567778888887
Q ss_pred chHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 445 MTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 445 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
+.....-.++..++..+...+...|++++|+..+++.. .+.+..+|..++.++...|++++|...|+++++.+|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 77433334456778888889999999999999998752 3456888899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 523 THGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++..++.+|.+.|++++|+..|++..+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.2e-14 Score=133.82 Aligned_cols=267 Identities=14% Similarity=0.050 Sum_probs=196.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 007400 254 WTTMVSGYAKLGDMESASKLFNEMPE--K-NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASI 330 (605)
Q Consensus 254 ~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 330 (605)
.-.....+.+.|++++|...|+++.+ | ++.+|..+..++...|++++|+..|.+..+.. +-+...+..+..++...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 34567778999999999999999864 3 57789999999999999999999999998753 33567788888899999
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYDEQAIRLFHDM 410 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 410 (605)
|++++|.+.+..+...... ............. ..+.......+..+...+.+.+|...+.+.
T Consensus 101 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPA-YAHLVTPAEEGAG-----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TGGGCC--------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccc-hHHHHHhhhhhhh-----------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999998875421 1111110000000 001111111223344556778888888888
Q ss_pred HHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC
Q 007400 411 VRSSV-KPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHD 486 (605)
Q Consensus 411 ~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 486 (605)
++... .++...+..+...+...|++++|+..++++.. ..|+ ...+..++.+|.+.|++++|.+.+++.. .+.+
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 77322 22456788888899999999999999999883 3455 7788999999999999999999998862 2456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----------HHHHHHHHHhcCCchHHHH
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSAT-----------HGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~ 542 (605)
..+|..++.+|...|++++|+..|++++++.|++... +..+..++...|+.+.+..
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8889999999999999999999999999998876653 3456667777777665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.9e-09 Score=101.89 Aligned_cols=264 Identities=11% Similarity=-0.001 Sum_probs=179.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhcccchHHHHHHHHHHHHcCC--CC---ChhHHH
Q 007400 286 TTLIAGYTRNGLGQKALELFTRMMILRIRPN----QHTFSSCLCACASIVSLKHGKQVHGFLIRTNF--RS---NTIVMS 356 (605)
Q Consensus 286 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~---~~~~~~ 356 (605)
......+...|++++|++++++..+.....+ ...+..+..++...|++++|...++.+.+... .. ....+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345567778888888888888776421111 13455566777788888888888887765321 11 123445
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC-------CCCC---cchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTD-------NKEN---SMLWNTMISALTQHGYDEQAIRLFHDMVRSSVK----PDKITL 422 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~-------~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~ 422 (605)
.+...+...|++..+...+.... .... ...+..+...+...|+++.+...+......... ....++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 56677788888888887776432 1111 124555667788889999999988887753221 123455
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchHhhCCC---CC--HHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-----CCHHHHH
Q 007400 423 AVILNACTHSGLVQEGLTYFESMTHDLGII---PN--QEHHACLIELLAQAGCSDQLMNQLEKMP-YE-----HDSYLWN 491 (605)
Q Consensus 423 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~ 491 (605)
......+...++...+...+.......... +. ...+..+...+...|++++|...+++.. .. .....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 666667778888888888877665322211 11 3345666777888999999999988763 11 1244566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 492 ALHGVCRIHGNIDMGRKVVDQLIDQ------NPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 492 ~l~~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.++.++...|++++|...+++++.. .|+...++..++.+|.+.|++++|.+.+++..+
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6788889999999999999998754 344566788899999999999999999887754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=3.5e-10 Score=101.76 Aligned_cols=221 Identities=11% Similarity=0.004 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 007400 298 GQKALELFTRMMILRIRP---NQHTFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQV 374 (605)
Q Consensus 298 ~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 374 (605)
.+.++.-+++........ ...++..+..++.+.|++++|...|++.++.. +.+..++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344555555555432111 11245555666777777777777777777765 55667777888888888888888888
Q ss_pred HHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCC
Q 007400 375 FDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGI 451 (605)
Q Consensus 375 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 451 (605)
|+.... +.+..++..+..++...|++++|...|++.++. .|+ ......+..++...+..+.+..+..... . .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~ 168 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE-K--S 168 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-H--S
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh-c--c
Confidence 876542 225667888888888899999999999888874 453 4444444445555555555555555444 2 2
Q ss_pred CCCHHHHHHHHHHHHhcCC----hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 452 IPNQEHHACLIELLAQAGC----SDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.+....+. ++..+..... .+.+...+.... ..| ...+|..++..+...|++++|...|+++++.+|++...|.
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 22222221 2222222222 222222221110 112 2346777888999999999999999999999997765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3e-10 Score=104.98 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=145.4
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhcC--CCCCcchHHHHHHHHH
Q 007400 319 TFSSCLCACASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCG-CLNDGRQVFDLTD--NKENSMLWNTMISALT 395 (605)
Q Consensus 319 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 395 (605)
.++.+...+.+.+..++|..+++.+++.+ |-+...|+....++...| ++++|+..++... .+-+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 44555556667777888888888888776 556667777777777665 4777777777643 1225667777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCC---
Q 007400 396 QHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGC--- 470 (605)
Q Consensus 396 ~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--- 470 (605)
..|++++|++.++++++ +.| +...|..+..++...|++++|+..++++. .+.|+ ...|+.+..++.+.|.
T Consensus 124 ~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al---~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 124 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL---KEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred hhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHCCccHHHHHHHHHHHHHccccch
Confidence 77888888888887777 455 45677777777777777788888877777 33454 5566666666666554
Q ss_pred ---hHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHhc--CCchHHH
Q 007400 471 ---SDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA--THGLLSSIYSAL--GKGRLVE 541 (605)
Q Consensus 471 ---~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~a~ 541 (605)
+++|++.+.+. . .+.+...|..+...+.. ...+++.+.+++++++.|+... .+..++.+|... +..+.+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 45666666554 1 23456666666655443 3356677777777777665433 334555655443 5556666
Q ss_pred HHHHHHHh
Q 007400 542 KVRQLINE 549 (605)
Q Consensus 542 ~~~~~~~~ 549 (605)
..+++..+
T Consensus 278 ~~~~ka~~ 285 (315)
T d2h6fa1 278 DILNKALE 285 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.9e-08 Score=94.79 Aligned_cols=155 Identities=10% Similarity=-0.036 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC--CHHHHH
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRS--SVKPD----KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP--NQEHHA 459 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~ 459 (605)
......+...++...+...+.+.... ..... ...+..+...+...|+++.|...++.......-.+ ....+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 33444455556666666555544321 01111 12344455566677777777777777652111111 133455
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---------Cc
Q 007400 460 CLIELLAQAGCSDQLMNQLEKM-------PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS---------SA 522 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~ 522 (605)
.+..++...|++++|...+++. ...| ...++..++.++...|++++|++.+++++++.+.. ..
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~ 335 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 335 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHH
Confidence 6677777788888777777654 2222 24466778888899999999999999998873321 12
Q ss_pred hHHHHHHHHHhcCCchHHHH
Q 007400 523 THGLLSSIYSALGKGRLVEK 542 (605)
Q Consensus 523 ~~~~l~~~~~~~g~~~~a~~ 542 (605)
.+..+...+...++.+++..
T Consensus 336 ~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 336 AMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhcCCChHHHH
Confidence 23344555556666666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=8.4e-10 Score=101.91 Aligned_cols=206 Identities=12% Similarity=0.131 Sum_probs=152.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccc-chHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007400 283 VSWTTLIAGYTRNGLGQKALELFTRMMILRIRPN-QHTFSSCLCACASIV-SLKHGKQVHGFLIRTNFRSNTIVMSSLID 360 (605)
Q Consensus 283 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 360 (605)
.+|+.+...+.+.+.+++|+++++++++. .|+ ...|+....++...| ++++|...++.+++.. +-+..+|..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 46777778888899999999999999985 454 456677777777766 5899999999998887 667888899999
Q ss_pred HHHhcCChHHHHHHHHhcCC--CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC----
Q 007400 361 MYSKCGCLNDGRQVFDLTDN--KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSG---- 433 (605)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g---- 433 (605)
++.+.|++++|++.++.+.. +.+...|..+...+...|++++|+..++++++ +.| +...|+.+..++...+
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccch
Confidence 99999999999999987652 23778899999999999999999999999998 456 4557776666554433
Q ss_pred --cHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 007400 434 --LVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM----PYEHDSYLWNALHGVC 497 (605)
Q Consensus 434 --~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~ 497 (605)
.+++|+..+.++. ...|+ ...+..+...+...| .+++.+.++.. +...+...+..++..|
T Consensus 199 ~~~~~~ai~~~~~al---~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 199 RAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHH---HhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 4678888888887 33554 667777776665544 45555555443 2233455555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.3e-10 Score=101.98 Aligned_cols=214 Identities=13% Similarity=0.048 Sum_probs=150.5
Q ss_pred chHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCCcchHHHHHHHHHHcCCHHHHHHH
Q 007400 332 SLKHGKQVHGFLIRTNFRS---NTIVMSSLIDMYSKCGCLNDGRQVFDLTD--NKENSMLWNTMISALTQHGYDEQAIRL 406 (605)
Q Consensus 332 ~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 406 (605)
+.+.+...++++....... ...++..+..+|.+.|++++|++.|+... .+.++.+|+.+..++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455666666666543211 23466777889999999999999999754 233778999999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 007400 407 FHDMVRSSVKPD-KITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-Y 483 (605)
Q Consensus 407 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 483 (605)
|+++++ +.|+ ..++..+..++...|+++.|...|+...+. .|+ ......+...+.+.+..+.+..+..... .
T Consensus 94 ~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 94 FDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hhHHHH--HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 999999 5664 568899999999999999999999999833 343 4444445555566665555444433321 1
Q ss_pred CCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 484 EHDSYLWNALHGVC----RIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 484 ~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
.+....+. ++..+ ...+..+.+...+.......|....++..++.+|...|++++|...|++..+..
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 12211221 11121 122345555566666666677777889999999999999999999999987653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=1.4e-08 Score=93.48 Aligned_cols=179 Identities=8% Similarity=0.024 Sum_probs=98.5
Q ss_pred hHHHHHHHHhcCC---CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHH
Q 007400 368 LNDGRQVFDLTDN---KENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFES 444 (605)
Q Consensus 368 ~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 444 (605)
.++|..+|+.... +.+...|...+..+...|+.+.|..+|+++++.........|..++..+.+.|+.+.|..+|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3455555554321 1133445555566666666666666666666532111123556666666666666666666666
Q ss_pred chHhhCCCCC-HHHHHHHHHH-HHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 445 MTHDLGIIPN-QEHHACLIEL-LAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 445 ~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
+. ...|+ ...|...+.. +...|+.+.|..+|+++. .+.+...|..++..+...|++++|+.+|+++++..|.+
T Consensus 160 al---~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AR---EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HH---TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HH---HhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 65 22222 3333333332 223456666666666542 23455666666666666677777777777776665543
Q ss_pred Cc----hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 521 SA----THGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 521 ~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+. .|..++......|+.+.+..+++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 455566666666777777666666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=1.6e-08 Score=92.99 Aligned_cols=189 Identities=8% Similarity=0.034 Sum_probs=150.3
Q ss_pred cchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-C-cchHHHHHHHHHHcCCHHHHHHHH
Q 007400 331 VSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDN-KE-N-SMLWNTMISALTQHGYDEQAIRLF 407 (605)
Q Consensus 331 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~-~~~~~~l~~~~~~~g~~~~a~~~~ 407 (605)
+..+.+..++++.++...+.+...+...+..+.+.|+++.|..+|+.+.. .| + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 35678889999998766566777888889999999999999999997643 23 3 346889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC----C
Q 007400 408 HDMVRSSVKPDKITLAVILNA-CTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM----P 482 (605)
Q Consensus 408 ~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 482 (605)
+++++.+. .+...|...+.. +...|+.+.|..+|+.+... .+.+...+..+++.+.+.|++++|..+|++. +
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99998532 244445444433 34568999999999999843 2334788999999999999999999999985 2
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 007400 483 YEH--DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA 522 (605)
Q Consensus 483 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 522 (605)
.+| ....|...+......|+.+.+..+++++.+..|....
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 222 3568999998889999999999999999999886543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=5.5e-10 Score=104.66 Aligned_cols=230 Identities=8% Similarity=-0.044 Sum_probs=141.6
Q ss_pred CCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccc--chHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCChHHH
Q 007400 295 NGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV--SLKHGKQVHGFLIRTNFRSNTIVM-SSLIDMYSKCGCLNDG 371 (605)
Q Consensus 295 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A 371 (605)
.|++++|+..++...+.. +-+...+..+..++...+ +.+.+...+..+.+.. +.+...+ ......+...+.++.|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 344455555555555432 223333443433333333 3566666666666654 2333333 3444566667777777
Q ss_pred HHHHHhcCCC--CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhh
Q 007400 372 RQVFDLTDNK--ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDL 449 (605)
Q Consensus 372 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 449 (605)
+..++..... -+..+|+.+...+...|++++|...+.+... +.|+.. .+...+...+..+.+...+.... .
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l-~- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWL-L- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHH-H-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHH-H-
Confidence 7777765532 2556677777777777777766555544333 122211 12222333444556666666665 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 007400 450 GIIPNQEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLL 527 (605)
Q Consensus 450 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 527 (605)
.-.++...+..++..+...|+.++|...+.+.. ..| +..+|..++.++...|++++|...|+++++++|++...|..|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 222334455666777788889999999888753 333 456777888999999999999999999999999888888888
Q ss_pred HHHHHh
Q 007400 528 SSIYSA 533 (605)
Q Consensus 528 ~~~~~~ 533 (605)
+..+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 877764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=1.2e-09 Score=102.30 Aligned_cols=247 Identities=10% Similarity=-0.033 Sum_probs=177.7
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCChHH-HHH---HHHH-------HhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007400 293 TRNGLGQKALELFTRMMILRIRPNQHT-FSS---CLCA-------CASIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDM 361 (605)
Q Consensus 293 ~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~---ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (605)
...+..++|++++++..+. .|+..+ |+. ++.. +...|.+++|..+++.+.+.+ +.+...+..+..+
T Consensus 40 ~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~ 116 (334)
T d1dcea1 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHH
Confidence 3334458999999998873 566544 222 2222 233456788889999988876 5666777777777
Q ss_pred HHhcC--ChHHHHHHHHhcC--CCCCcchHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH
Q 007400 362 YSKCG--CLNDGRQVFDLTD--NKENSMLWNT-MISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLV 435 (605)
Q Consensus 362 ~~~~g--~~~~A~~~~~~~~--~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 435 (605)
+...+ ++++|...++... .+++...+.. ....+...+.+++|+..++++++. .| +...|..+..++...|++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~ 194 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 194 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCH
Confidence 76665 4788988888754 2235555544 445667789999999999998884 55 566888888888888888
Q ss_pred HHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007400 436 QEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQL 513 (605)
Q Consensus 436 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 513 (605)
++|...++.... +.|+ ...+...+...+..+++...+.+. ..+++...+..++..+...|++++|...+.++
T Consensus 195 ~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 195 PDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp CCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 887766665551 1222 122334455667777777766654 22344555666677788889999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 514 IDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 514 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
++.+|++..++..++.++...|++++|...++++.+.
T Consensus 269 ~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 269 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp CTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.1e-08 Score=76.80 Aligned_cols=101 Identities=8% Similarity=0.074 Sum_probs=55.3
Q ss_pred HHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 007400 427 NACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNI 503 (605)
Q Consensus 427 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 503 (605)
..+...|++++|+..|+++.+ ..|+ ...|..+..+|...|++++|+..+++.. .+.++..|..++.++...|++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 344555555555555555551 2333 4455555555555555555555555431 234555566666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH
Q 007400 504 DMGRKVVDQLIDQNPQSSATHGLLSSI 530 (605)
Q Consensus 504 ~~A~~~~~~~~~~~p~~~~~~~~l~~~ 530 (605)
++|+..|+++++.+|+++.++..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666666666666666665555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=6.1e-08 Score=74.12 Aligned_cols=91 Identities=9% Similarity=0.000 Sum_probs=83.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 007400 460 CLIELLAQAGCSDQLMNQLEKM--PYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKG 537 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 537 (605)
.-+..+.+.|++++|+..|++. ..+.+...|..++.++...|++++|+..++++++.+|+++..|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 4567789999999999999986 24567889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 007400 538 RLVEKVRQLINER 550 (605)
Q Consensus 538 ~~a~~~~~~~~~~ 550 (605)
++|+..+++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=2e-08 Score=85.97 Aligned_cols=114 Identities=8% Similarity=-0.109 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 007400 417 PDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKM-PYEH-DSYLWNAL 493 (605)
Q Consensus 417 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 493 (605)
|+...+......+.+.|++++|+..|+++. .+.|+ ...|..++.+|.+.|++++|+..+++. ...| +..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal---~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAI---TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 556666666777777777777777777766 22343 566677777777777777777777664 2223 46666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 494 HGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 494 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
+.+|...|++++|+..|++++++.|++...+...+..+..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 7777777777777777777777666555444444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.2e-07 Score=79.70 Aligned_cols=122 Identities=9% Similarity=-0.088 Sum_probs=69.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcC
Q 007400 391 ISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAG 469 (605)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 469 (605)
...+...|+++.|++.|.++ .+|+..++..+..++...|++++|+..|++.. .+.|+ ...|..++.+|.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl---~ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI---NRDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHH---HHhhhhhhhHHHHHHHHHhhc
Confidence 34455666666666666543 23455566666666666666666666666666 23444 556666666666666
Q ss_pred ChHHHHHHHHhCC--CCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 007400 470 CSDQLMNQLEKMP--YEH----------------DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQ 519 (605)
Q Consensus 470 ~~~~A~~~~~~~~--~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 519 (605)
++++|+..|++.. .+. ...++..++.++...|++++|.+.+++++++.|+
T Consensus 85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 6666666655531 000 0234445555566666666666666666666553
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.73 E-value=2.4e-08 Score=75.73 Aligned_cols=90 Identities=8% Similarity=-0.065 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
..++..+.+.|++++|+..+++.. .+.++.+|..++.++...|++++|+..|+++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 346777889999999999998862 345688999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH
Q 007400 537 GRLVEKVRQLIN 548 (605)
Q Consensus 537 ~~~a~~~~~~~~ 548 (605)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=7.5e-08 Score=78.50 Aligned_cols=117 Identities=4% Similarity=-0.035 Sum_probs=92.6
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhc
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIH 500 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 500 (605)
.....|.+.|++++|+..|+++. .+.|+ ...|..+..+|...|++++|.+.|+++. .+.+..+|..++.++...
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAI---ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcc---ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 34556778888888888888887 23455 7788888888888888888888888762 345678999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH--hcCCchHHHHH
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS--ALGKGRLVEKV 543 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~ 543 (605)
|++++|...+++++++.|+++..+..+..+.. ..+.++++...
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998888776654 34456666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1e-07 Score=80.23 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=82.3
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH
Q 007400 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 541 (605)
+..+...|++++|++.|+++. +|++.+|..++.++...|++++|++.|+++++++|+++.+|..++.+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 556788999999999999986 6888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 007400 542 KVRQLINER 550 (605)
Q Consensus 542 ~~~~~~~~~ 550 (605)
..|++..+.
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.1e-07 Score=75.69 Aligned_cols=92 Identities=8% Similarity=-0.090 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGK 536 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 536 (605)
...+..|.+.|++++|+..|++.. .+.+...|..++.++...|++++|...|+++++++|++..+|..++.++...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 344667889999999999999862 356788999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhC
Q 007400 537 GRLVEKVRQLINER 550 (605)
Q Consensus 537 ~~~a~~~~~~~~~~ 550 (605)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998774
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=4.1e-08 Score=83.93 Aligned_cols=95 Identities=8% Similarity=-0.016 Sum_probs=81.6
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHH
Q 007400 382 ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHA 459 (605)
Q Consensus 382 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 459 (605)
|+...+......+.+.|++++|+..|++.+. +.| +...|..+..+|.+.|+++.|+..|+++. .+.|+ ...|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHH
Confidence 4556677778889999999999999999988 456 56688899999999999999999999988 67786 77889
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 007400 460 CLIELLAQAGCSDQLMNQLEKM 481 (605)
Q Consensus 460 ~l~~~~~~~g~~~~A~~~~~~~ 481 (605)
.++.+|.+.|++++|+..|+++
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999875
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.1e-07 Score=72.74 Aligned_cols=106 Identities=14% Similarity=-0.012 Sum_probs=77.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCC---hHHHHHHHHhCC-CCCCH---HHHHHHHH
Q 007400 424 VILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGC---SDQLMNQLEKMP-YEHDS---YLWNALHG 495 (605)
Q Consensus 424 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~~~---~~~~~l~~ 495 (605)
.+++.+...+++++|.+.|++.. ...|+ +.++..++.++.+.++ +++|+.+++++- ..|+. .+|..++.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL---~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEK---AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45666667777778888887777 23443 6677777777776544 345777777753 23332 36778999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 007400 496 VCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYS 532 (605)
Q Consensus 496 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 532 (605)
+|.+.|++++|++.|+++++.+|++..+......+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999998887776665544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.1e-06 Score=71.96 Aligned_cols=110 Identities=6% Similarity=-0.056 Sum_probs=57.3
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007400 421 TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIH 500 (605)
Q Consensus 421 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 500 (605)
.+......+.+.|++++|+..|+++..-....+.... . -...... ....+|..++.+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~--------------~-~~~~~~~----~~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN--------------E-EAQKAQA----LRLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS--------------H-HHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch--------------H-HHhhhch----hHHHHHHHHHHHHHhh
Confidence 4445556677778888888888777632221111000 0 0000000 0012344455555566
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
|++++|+..++++++++|+++.++..++.+|...|++++|+..|+++.+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666665544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.2e-06 Score=71.82 Aligned_cols=133 Identities=10% Similarity=0.048 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
.+......+.+.|++++|+..|.+.+.. .|.... ... .-......+. ..+|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~---------~~~---~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS---------FSN---EEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC---------CCS---HHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhccc---------cch---HHHhhhchhH--------HHHHHHHHHHH
Confidence 4555667889999999999999998873 221100 000 1111111111 23577788899
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 007400 466 AQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLV 540 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 540 (605)
.+.|++++|+..+++.- .+.++.+|..++.++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998762 3457889999999999999999999999999999999999999999988776665544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=3.1e-05 Score=69.63 Aligned_cols=131 Identities=6% Similarity=-0.018 Sum_probs=72.4
Q ss_pred eHHHHHHHHHh-cCChHHHHHHHHHHHh----CCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh-----
Q 007400 152 SWNTMIIGYAK-SGAVEEGLKFYKVLRR----FSISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNV----- 220 (605)
Q Consensus 152 ~~~~li~~~~~-~~~~~~a~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----- 220 (605)
++..+...|.. .|++++|++.|++..+ .+..+ -..++..+...+...|++++|...++++.........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 34444555543 5788888888877643 11111 1234566677777777888888777777665432211
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHhhcCCCCcc--------hHHHHHHHHHh--cCChHHHHHHHhhCCCCCh
Q 007400 221 -VISSSIVDAYAKCGELSDARRLFDETDARDVL--------TWTTMVSGYAK--LGDMESASKLFNEMPEKNP 282 (605)
Q Consensus 221 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~ 282 (605)
..+...+..+...|+++.|...+++..+.++. ....++.++-. .+.+++|+..|+++.+-|.
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 12334444566677788887777776654321 22334444433 2345666666666555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.48 E-value=1.9e-05 Score=70.10 Aligned_cols=225 Identities=10% Similarity=-0.036 Sum_probs=136.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----ccchHHHHHHHHHHHHcCCCCChhHHH
Q 007400 281 NPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACAS----IVSLKHGKQVHGFLIRTNFRSNTIVMS 356 (605)
Q Consensus 281 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 356 (605)
|+..+..|...+.+.|++++|+++|++..+.| +...+..|...+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 45566777777778888888888888887765 33333334444432 334555555555544443
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q 007400 357 SLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQ----HGYDEQAIRLFHDMVRSSVKPDKITLAVILNAC--- 429 (605)
Q Consensus 357 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~--- 429 (605)
+......+...+.. .++.+.|...++...+.|.. .....+...+
T Consensus 69 --------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~ 119 (265)
T d1ouva_ 69 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDG 119 (265)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHC
T ss_pred --------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCC
Confidence 22222333222222 34556666777666665422 1112221111
Q ss_pred -hccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 007400 430 -THSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSDQLMNQLEKMPYEHDSYLWNALHGVCRI----H 500 (605)
Q Consensus 430 -~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~ 500 (605)
........+...+.... . ..+...+..|...|.. ..+...+...++......+..+...++..+.. .
T Consensus 120 ~~~~~~~~~a~~~~~~~~-~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 120 KVVTRDFKKAVEYFTKAC-D---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp SSSCCCHHHHHHHHHHHH-H---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CcccchhHHHHHHhhhhh-c---ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccc
Confidence 22344566666666554 2 2345556666666664 34556666666665434567777777777765 5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007400 501 GNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA----LGKGRLVEKVRQLINERQF 552 (605)
Q Consensus 501 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 552 (605)
.++++|+..|+++.+.. ++..+..|+.+|.+ ..++++|.+.|++..+.|.
T Consensus 196 ~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 196 KNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 68999999999998874 57788899999986 4489999999999877764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.4e-07 Score=69.94 Aligned_cols=92 Identities=8% Similarity=-0.064 Sum_probs=78.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CchHHHHHHHH
Q 007400 459 ACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHG---NIDMGRKVVDQLIDQNPQS--SATHGLLSSIY 531 (605)
Q Consensus 459 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 531 (605)
..++..+...+++++|.+.|++.. .+.++.++..++.++.+.+ ++++|+.+++++++.+|.+ ..++..+|.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457778889999999999999862 3567899999999997654 5567999999999988744 34789999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007400 532 SALGKGRLVEKVRQLINER 550 (605)
Q Consensus 532 ~~~g~~~~a~~~~~~~~~~ 550 (605)
.+.|++++|++.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999873
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.46 E-value=5.9e-06 Score=74.61 Aligned_cols=167 Identities=3% Similarity=-0.084 Sum_probs=85.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-----ChhHHHH
Q 007400 156 MIIGYAKSGAVEEGLKFYKVLRRF----SISC-NEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLS-----NVVISSS 225 (605)
Q Consensus 156 li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 225 (605)
....|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...++......... ...++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355566666677777666665431 1111 12355556666666667776666666554421111 1223333
Q ss_pred HHHHHHh-cCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHH
Q 007400 226 IVDAYAK-CGELSDARRLFDETDARDVLTWTTMVSGYAKLGDMESASKLFNEMPEK--NPVSWTTLIAGYTRNGLGQKAL 302 (605)
Q Consensus 226 l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 302 (605)
+...|.. .|++++|.+.+++. .+++.....+ -..++..++..+...|++++|+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A------------------------~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~ 178 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELA------------------------GEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH------------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHH------------------------HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence 4444422 35555555444432 1222222111 1235677788888888888888
Q ss_pred HHHHHHHHCCCCCCh------HHHHHHHHHHhcccchHHHHHHHHHHHHc
Q 007400 303 ELFTRMMILRIRPNQ------HTFSSCLCACASIVSLKHGKQVHGFLIRT 346 (605)
Q Consensus 303 ~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 346 (605)
..|+++......... ..+...+..+...|+++.|...++...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888887764211111 11222333444556666666666555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.44 E-value=2.6e-06 Score=68.38 Aligned_cols=63 Identities=5% Similarity=-0.142 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.++..++.+|.+.|++++|+..++++++.+|.+..+|..++.++...|++++|+..|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778888999999999999999999999999999999999999999999999999988763
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=6e-08 Score=95.40 Aligned_cols=146 Identities=9% Similarity=0.004 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 007400 401 EQAIRLFHDMVRSSVKPDKITLAVIL--NACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQ 477 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 477 (605)
..+.+.++...+....++..-..... ......+.++.++..++... ++.|+ ...+..+...+.+.|+.++|...
T Consensus 66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 44555566555543333332211111 11222344555555554433 44444 55667777777788888777766
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 478 LEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 478 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+++........++..++..+...|++++|+..|++++++.|++...|..||.++...|++.+|+..|.+...
T Consensus 143 ~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 143 QSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 554320111245666788888888888888888888888888888888888888888888888888887765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=2.2e-06 Score=66.29 Aligned_cols=92 Identities=10% Similarity=-0.001 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 007400 458 HACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSA-------THGLLS 528 (605)
Q Consensus 458 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~l~ 528 (605)
+..++..+.+.|++++|+..|++.. .+.+..++..++.+|...|++++|+..++++++++|.+.. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4567778888899999999888762 3467889999999999999999999999999999887765 455667
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 007400 529 SIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 529 ~~~~~~g~~~~a~~~~~~~~~ 549 (605)
.++...+++++|++.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 778888899999999987754
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.36 E-value=1.3e-06 Score=71.61 Aligned_cols=65 Identities=5% Similarity=-0.138 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
....+..++.++.+.|++++|+..+.++++++|+++.+|..+|.+|...|++++|+..|+.+.+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567778888888999999999999999999999999999999999999999999999888763
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.33 E-value=6.1e-06 Score=67.37 Aligned_cols=92 Identities=7% Similarity=-0.044 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
.+|..+..+|.+.|++++|+..+++.. .+.+..+|..++.++...|++++|...|+++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456778889999999999999998862 456788999999999999999999999999999999999999999988877
Q ss_pred cCCchH-HHHHHHHH
Q 007400 534 LGKGRL-VEKVRQLI 547 (605)
Q Consensus 534 ~g~~~~-a~~~~~~~ 547 (605)
.+...+ ..+.+..|
T Consensus 145 ~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 145 AKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 766544 34444444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.30 E-value=0.00025 Score=62.50 Aligned_cols=228 Identities=11% Similarity=-0.011 Sum_probs=130.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHhhCCC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 007400 250 DVLTWTTMVSGYAKLGDMESASKLFNEMPE-KNPVSWTTLIAGYTR----NGLGQKALELFTRMMILRIRPNQHTFSSCL 324 (605)
Q Consensus 250 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 324 (605)
|+..+..+...+...+++++|.+.|++..+ .+..++..|...|.. ..+...|..++......+. ......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccc
Confidence 466777888888899999999999999864 367777778888776 5688999999998887652 22222332
Q ss_pred HHHh----cccchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCcchHHHHHHHHHHcCCH
Q 007400 325 CACA----SIVSLKHGKQVHGFLIRTNFRSNTIVMSSLIDMYSKCGCLNDGRQVFDLTDNKENSMLWNTMISALTQHGYD 400 (605)
Q Consensus 325 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 400 (605)
..+. ...+.+.|...++...+.|.. .....+...+.... ......
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~----------------------------~~~~~~ 126 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK----------------------------VVTRDF 126 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS----------------------------SSCCCH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC----------------------------cccchh
Confidence 2222 245667777777777766521 11122222222100 001223
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHh----cCChH
Q 007400 401 EQAIRLFHDMVRSSVKPDKITLAVILNACTH----SGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQ----AGCSD 472 (605)
Q Consensus 401 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 472 (605)
..+...+...... .+...+..+...+.. ..+...+..+++... +. .+......|...|.. ..+++
T Consensus 127 ~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~-~~---g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 127 KKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKAC-DL---KDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccc-cc---cccccccchhhhcccCcccccchh
Confidence 3334444333331 133333333333332 334455555555544 21 134444445555444 44677
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 007400 473 QLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 473 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 518 (605)
+|...|++.....++..+..|+..|.. ..+.++|.+.|+++.+..+
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 777777665333456666677776664 3477888888888877754
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.27 E-value=1e-05 Score=65.95 Aligned_cols=63 Identities=5% Similarity=-0.139 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 488 YLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 488 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
.+|..++.+|...|++++|+..++++++++|++..++..++.+|...|++++|+..|+++.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356678889999999999999999999999999999999999999999999999999998874
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.26 E-value=7.8e-06 Score=65.43 Aligned_cols=127 Identities=8% Similarity=-0.069 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHH
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELL 465 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 465 (605)
.+......+.+.|++.+|+..|.+.+.. .|... ............. ....+|..++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 4555666777888888888888887763 21110 0000000000000 1134677899999
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 466 AQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
.+.|++++|++.+++.- .+.+..+|..++.++...|++++|+..|+++++++|+|..+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999998862 356789999999999999999999999999999999999988887776544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=4.8e-06 Score=68.15 Aligned_cols=131 Identities=8% Similarity=-0.027 Sum_probs=93.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCC-CHHHHHHHHHHH
Q 007400 387 WNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIP-NQEHHACLIELL 465 (605)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 465 (605)
+......+...|++++|+..|.++++. .+.. ... .... . ...+.| ....+..+..++
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~-------~~~---~~~~-------~---~~~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS-------RAA---AEDA-------D---GAKLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH-------HHH---SCHH-------H---HGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh-------hhh---hhhH-------H---HHHhChhhHHHHHHHHHHH
Confidence 344455667778888888877776541 1000 000 0000 0 001223 255778889999
Q ss_pred HhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 007400 466 AQAGCSDQLMNQLEKM-P-YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRL 539 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 539 (605)
.+.|++++|+..++++ . .+.++.+|..++.++...|++++|+..|+++++++|++..+...+..+..+.....+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 2 345788999999999999999999999999999999999999888888765544433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.19 E-value=3.6e-06 Score=63.28 Aligned_cols=88 Identities=9% Similarity=0.007 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHH
Q 007400 388 NTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELL 465 (605)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 465 (605)
..+...+.+.|++++|+..|++.+. ..| +..+|..+..++.+.|++++|+..++++. .+.|+ ...+..++.+|
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHAR---MLDPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccc---ccccccccchHHHHHHH
Confidence 3445556666777777777777666 344 34566666666667777777777776666 23443 55556666666
Q ss_pred HhcCChHHHHHHHHh
Q 007400 466 AQAGCSDQLMNQLEK 480 (605)
Q Consensus 466 ~~~g~~~~A~~~~~~ 480 (605)
...|++++|.+.+++
T Consensus 95 ~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 95 TNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 666666666665554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0022 Score=57.51 Aligned_cols=136 Identities=12% Similarity=0.051 Sum_probs=75.2
Q ss_pred CCChhhHHHHHHHhhhcCChhHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchHHHHHHHH
Q 007400 49 RLPAETLAFILQQCAESKSLKLGKRVHLHLKLTQRKTPTTFLSNHLISMYFKCGSDVDARKVFDKIPVKNLFSYNNMLSG 128 (605)
Q Consensus 49 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~ 128 (605)
.|+..-...+...|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+.+.+.. +..+|..+...
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~ 78 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFA 78 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 3556666677777878888888888876442 45667777777888888777766543 45577777777
Q ss_pred HHccCChHHHHHHHhhcCCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 007400 129 YANLGMMKHARNLFDNMAERDVVSWNTMIIGYAKSGAVEEGLKFYKVLRRFSISCNEFSFAGILTICVKL 198 (605)
Q Consensus 129 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 198 (605)
+.+.....-|.- .......++.....++..|-..|.+++...+++..... -..+...++.++..+++.
T Consensus 79 l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 79 CVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 777665544322 22222234444556777777778888877777766432 234555666777766664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.4e-05 Score=57.69 Aligned_cols=77 Identities=13% Similarity=0.083 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 455 QEHHACLIELLAQAGCSDQLMNQLEKMP--------YEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 455 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.+.+..++..+.+.|++++|...|++.. ..+ ...++..++.++.+.|++++|+..++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3344466777777777777777776541 112 2567888999999999999999999999999999999888
Q ss_pred HHHHHH
Q 007400 526 LLSSIY 531 (605)
Q Consensus 526 ~l~~~~ 531 (605)
.+....
T Consensus 85 Nl~~~~ 90 (95)
T d1tjca_ 85 NLKYFE 90 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.01 E-value=8.5e-06 Score=66.88 Aligned_cols=69 Identities=9% Similarity=-0.037 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCcCC
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINE-----RQFKKE 555 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~ 555 (605)
...+..++..+...|++++|+..++++++.+|.+...|..++.+|.+.|++++|+++|+.+.+ .|+.|.
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~ 140 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 140 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 346777889999999999999999999999999999999999999999999999999998843 466543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=7.1e-06 Score=64.85 Aligned_cols=126 Identities=17% Similarity=0.149 Sum_probs=75.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC----------cHHHHHHHHHHchHhhCCCCC-HHHHHHH
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSG----------LVQEGLTYFESMTHDLGIIPN-QEHHACL 461 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g----------~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 461 (605)
|-+.+.+++|...|+..++ +.| +..++..+..++...+ .+++|+..|+++. .+.|+ ..+|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl---~l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH---HhcchhhHHHhhH
Confidence 4456667788888888777 455 4456666666665433 3345555555555 23343 4455555
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH
Q 007400 462 IELLAQAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVE 541 (605)
Q Consensus 462 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 541 (605)
+.+|...|++. ++... ..+++++|.+.|+++++++|++...+..|+... +|.
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~ 133 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAP 133 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHH
Confidence 55444433210 11110 112468999999999999998887777776664 566
Q ss_pred HHHHHHHhCCC
Q 007400 542 KVRQLINERQF 552 (605)
Q Consensus 542 ~~~~~~~~~~~ 552 (605)
+++.++.+.|+
T Consensus 134 ~~~~e~~k~~~ 144 (145)
T d1zu2a1 134 QLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHSSS
T ss_pred HHHHHHHHHhc
Confidence 66666666554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2.1e-05 Score=60.53 Aligned_cols=105 Identities=5% Similarity=0.008 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHH
Q 007400 389 TMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLA 466 (605)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 466 (605)
.+...+...|++++|+..|.+.++. .| +...+..+..+|...|++++|+..++++.. +.|+ ...+..+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~~~~~~~~~~~----- 78 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE---VGRENREDYRQI----- 78 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHHSTTCHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH---hCcccHHHHHHH-----
Confidence 3444455555555555555555552 33 234455555555555555555555555441 1111 0111111
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 007400 467 QAGCSDQLMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATH 524 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 524 (605)
..+|..++..+...+++++|+..|++++...| ++...
T Consensus 79 --------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~ 115 (128)
T d1elra_ 79 --------------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVL 115 (128)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHH
T ss_pred --------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHH
Confidence 23455667777778888888888888887766 34433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.92 E-value=4.7e-05 Score=61.00 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 487 SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-----------SATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 487 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
..+|+.++.+|...|++++|...+++++++.|.. ..++..++.+|...|++++|...|++..+.
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888999999999999999988763321 225678899999999999999999988653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.0074 Score=54.03 Aligned_cols=136 Identities=12% Similarity=0.097 Sum_probs=76.0
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 007400 183 CNEFSFAGILTICVKLEELKLTRQVHGQVLVTGFLSNVVISSSIVDAYAKCGELSDARRLFDETDARDVLTWTTMVSGYA 262 (605)
Q Consensus 183 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 262 (605)
||..-...+...|.+.|.++.|..+|..+ .-|..++..+.+.++++.|.+.+.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 56555666777788888888888887643 234567777788888888877776553 5567777777777
Q ss_pred hcCChHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccc
Q 007400 263 KLGDMESASKLFNEMPEKNPVSWTTLIAGYTRNGLGQKALELFTRMMILRIRPNQHTFSSCLCACASIV 331 (605)
Q Consensus 263 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 331 (605)
.......+.- .......++.....++..|-..|.+++.+.++...... -..+...++.++..+++.+
T Consensus 81 ~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 6666554422 22222234444556777777778888777777766532 2445556666666666643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.83 E-value=2.3e-05 Score=68.69 Aligned_cols=127 Identities=10% Similarity=0.084 Sum_probs=93.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCCh
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCS 471 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 471 (605)
..+.|++++|+..+++.++. .| |...+..+...++..|++++|...++... ...|+ ...+..+..++...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~---~l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHhcccc
Confidence 44679999999999999994 56 56789999999999999999999999988 44676 45555666666555555
Q ss_pred HHHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 472 DQLMNQLEKM--PYEH-DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 472 ~~A~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
+++..-.... ..+| +...+...+..+...|+.++|.+.++++.+..|..+..+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 5544433221 1223 2334445566788899999999999999999998776654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.81 E-value=1.8e-05 Score=62.45 Aligned_cols=84 Identities=12% Similarity=0.054 Sum_probs=58.7
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 007400 467 QAGCSDQLMNQLEKM--PYEHDSYLWNALHGVCRI----------HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSAL 534 (605)
Q Consensus 467 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 534 (605)
+.+.+++|+..+++. ..+.++.++..++.++.. .+.+++|+..|+++++++|+++.+|..++.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 344455555555543 123344455555544432 34568999999999999999999999999999887
Q ss_pred CC-----------chHHHHHHHHHHhC
Q 007400 535 GK-----------GRLVEKVRQLINER 550 (605)
Q Consensus 535 g~-----------~~~a~~~~~~~~~~ 550 (605)
|+ +++|.+.|++..+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhccccc
Confidence 64 67888888888764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=7e-05 Score=53.81 Aligned_cols=65 Identities=12% Similarity=-0.059 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007400 486 DSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS-------SATHGLLSSIYSALGKGRLVEKVRQLINER 550 (605)
Q Consensus 486 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 550 (605)
+......++..+.+.|++++|...|+++++..|.+ ..++..|+.++.+.|++++|+..++++.+.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34445678889999999999999999999885443 346889999999999999999999999874
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=6.3e-06 Score=80.61 Aligned_cols=77 Identities=12% Similarity=-0.042 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 007400 457 HHACLIELLAQAGCSDQLMNQLEKMP--YEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA 533 (605)
Q Consensus 457 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 533 (605)
++..++..+...|++++|...|++.. .+.+...|+.++..+...|+..+|...|.+++...|+.+.++..|+.++.+
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 34444444555555555555544431 123344455555555555555555555555555544444444444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.58 E-value=0.00042 Score=55.13 Aligned_cols=65 Identities=15% Similarity=0.038 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007400 456 EHHACLIELLAQAGCSDQLMNQLEKM--------PYEHD-----SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQS 520 (605)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 520 (605)
..|+.+..+|...|++++|.+.+++. ...++ ..++..++.+|...|++++|+..|++++++.|..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 34555666666666666666555543 11111 2356778899999999999999999999885533
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.34 E-value=0.0012 Score=53.54 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=59.1
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchH----hhCCCCCHHHH
Q 007400 385 MLWNTMISALTQHGYDEQAIRLFHDMVRSSVKP-DKITLAVILNACTHSGLVQEGLTYFESMTH----DLGIIPNQEHH 458 (605)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 458 (605)
..+..++..+...|++++|+..++++++ +.| +...|..++.++...|+..+|++.|+++.. +.|+.|...+-
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 4567788888999999999999999988 566 567899999999999999999999988743 45888887653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.29 E-value=7.3e-05 Score=65.38 Aligned_cols=120 Identities=13% Similarity=-0.005 Sum_probs=86.1
Q ss_pred HhccCcHHHHHHHHHHchHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 007400 429 CTHSGLVQEGLTYFESMTHDLGIIPN-QEHHACLIELLAQAGCSDQLMNQLEKMP-YEH-DSYLWNALHGVCRIHGNIDM 505 (605)
Q Consensus 429 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~ 505 (605)
..+.|++++|+..+++.. ...|+ ...+..++.+|+..|++++|...++... ..| +...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al---~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAI---KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHH---HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 456799999999999998 34565 8899999999999999999999999873 334 45566666666554444443
Q ss_pred HHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007400 506 GRKVVDQLIDQ-NPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQ 551 (605)
Q Consensus 506 A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 551 (605)
+...+.+.... .|++...+...+.++...|++++|.+.++++.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 33222221111 34444556677888999999999999999987653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.02 E-value=0.0023 Score=47.08 Aligned_cols=65 Identities=9% Similarity=-0.016 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007400 485 HDSYLWNALHGVCRIHG---NIDMGRKVVDQLIDQNPQSS-ATHGLLSSIYSALGKGRLVEKVRQLINE 549 (605)
Q Consensus 485 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 549 (605)
+...+...+++++.+.. +.++|+.+++++++.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 45556666666666543 44577777777777666543 5666777777777777777777777765
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.15 Score=47.87 Aligned_cols=114 Identities=10% Similarity=0.071 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 398 GYDEQAIRLFHDMVRSSVKPDKI----TLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
.+.+.|..++....... ..+.. ....+.......+..+.+..++.... . ...+.......+....+.+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~-~--~~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI-M--RSQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH-H--TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhc-c--cccchHHHHHHHHHHHHcCChHH
Confidence 45566666666554432 11221 11122222334445555655555544 1 12233333334444455666666
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007400 474 LMNQLEKMPYEHD--SYLWNALHGVCRIHGNIDMGRKVVDQLID 515 (605)
Q Consensus 474 A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 515 (605)
+...+..+...+. .....=++.++...|+.+.|...|..+..
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 6666666642221 12222245566666677777666666653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.76 E-value=0.051 Score=39.13 Aligned_cols=141 Identities=10% Similarity=0.065 Sum_probs=102.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007400 394 LTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIELLAQAGCSDQ 473 (605)
Q Consensus 394 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 473 (605)
+...|..++..+++.+.... .+..-|+.++--....-+-+.....++.+-+-+.+. .+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 45678889999998888763 255567776666666666666777777665322222 3445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007400 474 LMNQLEKMPYEHDSYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSALGKGRLVEKVRQLINERQFK 553 (605)
Q Consensus 474 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 553 (605)
....+-.+. .+.......+.....+|+-++-.++++.+++...-++.....++.+|.+.|...++-+++.++-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 555554444 445556667788889999999999999988875558999999999999999999999999999998875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.15 E-value=0.028 Score=42.53 Aligned_cols=81 Identities=10% Similarity=-0.048 Sum_probs=46.0
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHH
Q 007400 470 CSDQLMNQLEKMPYEHDSYLWNALHGVCRI----HGNIDMGRKVVDQLIDQNPQSSATHGLLSSIYSA----LGKGRLVE 541 (605)
Q Consensus 470 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~ 541 (605)
+.++|..++++.....++.....|+..|.. ..+.++|.+.|+++.+.. ++.....|+.+|.. ..+..+|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence 344444444443222344444444444433 346677777777776653 45566677777766 34677777
Q ss_pred HHHHHHHhCCC
Q 007400 542 KVRQLINERQF 552 (605)
Q Consensus 542 ~~~~~~~~~~~ 552 (605)
+.+++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 77777766654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.045 Score=39.94 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 007400 452 IPNQEHHACLIELLAQAGC---SDQLMNQLEKMP-YEH-D-SYLWNALHGVCRIHGNIDMGRKVVDQLIDQNPQSSATHG 525 (605)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 525 (605)
.|+..+--.+..++.+... .++++.++++.- ..| + ...+..|+.+|.+.|++++|+..++++++.+|++..+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 3455666667777776654 456777777652 123 3 357778888999999999999999999999998877654
Q ss_pred HH
Q 007400 526 LL 527 (605)
Q Consensus 526 ~l 527 (605)
..
T Consensus 112 L~ 113 (124)
T d2pqrb1 112 LK 113 (124)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.78 Score=42.71 Aligned_cols=171 Identities=11% Similarity=-0.037 Sum_probs=106.0
Q ss_pred hcCChHHHHHHHHhcCCC-CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 007400 364 KCGCLNDGRQVFDLTDNK-ENSMLWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYF 442 (605)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 442 (605)
..+..+.+...+...... .+.....-.+......+++..+...+..|... ..-...-..-+.+++...|+.+.|..+|
T Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~ 342 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEIL 342 (450)
T ss_dssp STTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence 345566666666543322 23333344555566788999999998877542 2223456677889999999999999999
Q ss_pred HHchHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHH-H---HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007400 443 ESMTHDLGIIPNQEHHACLIELLAQAGCSDQLMNQLEKMPYEHDSY-L---WNALHGVCRIHGNIDMGRKVVDQLIDQNP 518 (605)
Q Consensus 443 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 518 (605)
..+. . .++ .|..|. ..+.|..-.. . ....+..+... . -...+..+...|+...|...+..+.+..
T Consensus 343 ~~~a---~-~~~--fYG~LA--a~~Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~- 411 (450)
T d1qsaa1 343 HQLM---Q-QRG--FYPMVA--AQRIGEEYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK- 411 (450)
T ss_dssp HHHH---T-SCS--HHHHHH--HHHTTCCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHh---c-CCC--hHHHHH--HHHcCCCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-
Confidence 9886 2 233 333332 2233321000 0 00011111111 1 1123456678899999999999887653
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007400 519 QSSATHGLLSSIYSALGKGRLVEKVRQLI 547 (605)
Q Consensus 519 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 547 (605)
++.-...++.+..+.|.++.|+......
T Consensus 412 -~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 412 -SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 4667778999999999999999887765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.48 E-value=0.11 Score=39.10 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHch
Q 007400 398 GYDEQAIRLFHDMVRSSVKPDKITLAVILNACTH----SGLVQEGLTYFESMT 446 (605)
Q Consensus 398 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 446 (605)
.+.++|.++|++..+.| ++.....|...|.. ..+.++|..+|++..
T Consensus 73 ~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHH
Confidence 34556666666665544 23333334444332 345666666666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.58 E-value=1.2 Score=31.90 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 007400 386 LWNTMISALTQHGYDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMT 446 (605)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 446 (605)
-+...+..+...|+-+.-.++++.+.+. -.|++.....+..+|.+.|+..++.+++.++-
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~AC 147 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 147 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3444555666666666666666666553 35666666666777777777777776666665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.35 E-value=1.8 Score=29.35 Aligned_cols=63 Identities=16% Similarity=0.257 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchHhhCCCCCHHHHHHHHH
Q 007400 399 YDEQAIRLFHDMVRSSVKPDKITLAVILNACTHSGLVQEGLTYFESMTHDLGIIPNQEHHACLIE 463 (605)
Q Consensus 399 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 463 (605)
+.-++.+-+..+....+.|++......+.+|.+.+++..|.++++-+..+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 3445666777777777889999999999999999999999999998875433 33456655543
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